dse_520

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTATGCATTATACTTAAGTTTATCCCCAACCGATTTCTTCCAGCGGTCGCGCGCGTGTGTGTGTGTAAGTAGTTATAGATCGTAAGACGGCGCGGATATATCGCGGAACGATTGTAGCTTGGATGACCGGATGTTTCGGCCAAGCGATTGGAGCCGTGTTTTTTCCGGCTTCACAGCTCGTTACCAACTCTTTTAA ************************************************...................................(((((..((((.((((((((((.(((....((.(((((....))))).))......)))))))).....))))))))).)))))..((((((....(((((...))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	V114 embryo	M054 female body
.........................................................................................................................................................................................ATGTTTCGGCCAAGCGATTGGA............................................	22	0	1	1.00	1	0	1	0
......TGCAGCCATTGCAGGCGAGACTCTCCA..........................................................................................................................................................................................................................	27	2	1	1.00	1	1	0	0
.........................................................................................................................................................................TAGCTTGGATGATCGGTTT...............................................................	19	3	20	0.10	2	1	0	1

TCTCTAACGTCGGTAACGTCCGCTCTGAGATTTTCGTGTGGCACGCTTTCCATGTAATACGTAATATGAATTCAAATAGGGGTTGGCTAAAGAAGGTCGCCAGCGCGCGCACACACACACATTCATCAATATCTAGCATTCTGCCGCGCCTATATAGCGCCTTGCTAACATCGAACCTACTGGCCTACAAAGCCGGTTCGCTAACCTCGGCACAAAAAAGGCCGAAGTGTCGAGCAATGGTTGAGAAAATT ************************************************...................................(((((..((((.((((((((((.(((....((.(((((....))))).))......)))))))).....))))))))).)))))..((((((....(((((...))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo
...............................................................................................................................................CCGCCCCTATATAGCTCCT.........................................................................................	19	2	1	4.00	4	2	2
............................................................................................................................................................................GAACCTATTGGCCTAAAAG............................................................	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_0:14191881-14192131 -	dse_520	AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGC----GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGA----TATATCGCGGA-----------------------AC---GATTGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAGCCGTGTTTTTT---CCGGCTTCACAGCT-------C--GTTAC---------CAACT-----CTTTTA---A
droSim2	3r:13327479-13327729 -	dsi_30510	AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGC----GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGA----TATATCGCGGA-----------------------TC---GATTGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAGCCGTGTTTTTT---CCGGCTTCACAGCG-------C--GTTAC---------CAACT-----CTTTTA---A
dm3	chr3R:7777498-7777750 +		AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGCTCGC--------------------GCT------C--GT--GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGA----TATATCGCGGA-----------------------TC---GATTGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAGTCGTGTTTTTT---CCGGCTTCACAGCG-------C--GTTAC---------CAACT-----CTTTTA---A
droEre2	scaffold_4770:13842469-13842723 -		AGAGATTGCAACCATTGCAGGCGAGGCATTAAAAGCACACCGTGTTAAAGGTACATTAC--GCATTACA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGACCGC----------------------------GT------GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAAACG---------------GTGCGGA----TTTATCGCGGACTATT-----GCTAT--------TC---GATCGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGAGTGCAGCCGAGTTTATA---CCGGC----CAGCG-------C--GTTAT---------CACCT-----CTTTTA---A
droYak3	3R:16641747-16642020 -		AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTTAT---------------CCC-AAAACCGAT-----------------------------------------------------------TTCTTCCAGCGATCGC----------------------------GTGTGT--GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGAT--CGTAAGATCGTAAGGCGCGGA----TATATCGCGGACTATT-----GCCATTCGAAGATTC---AATCGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAT-TGA----------ACGGC----CAGCG-------C--GTTAG---------CAACC----ACTTTTA---A
droEug1	scf7180000409557:474784-475054 +		AGAAATTGCAGCCATTGCAGGCGAAACTCTGAAAGCACACCGCGCGAAAGGTACATTAT--ACATTACA----------CTTAAGTTCAT---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCTAGCGCTCGC--------------------GCGT----GA--GTGTATGTGTGTGTGTAAGTAG--------------------------TTATA-C--------------------------------------------------------ATATATAATAAGACA---------------GCGCGGA----TATATCGCGGACTATC-----GCTAT--------CC---AATCTAAGCGTGGATGACCGGA-------------------------------------CGTTT-C----------------------GG--------------CCAAAG----CGATTGCAGCCGAGTTTTTTTATTTGGC----GAGCG-------T--GCTAA---------AACCT-----TTTTTA---A
droBia1	scf7180000299102:8754-9008 -		AGAGATTGCAGCCATTGCATCCGAGACCCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGT----GTGTGTGTGTGTAAGTAG--------------------------TTATAGCA----T--------------------------------------------------ATAGATCGTAAGAAG---------------GCGCGGATACGTATGTCGCGGACTA------------------------------AGGCTGGGATGACCCGA-------------------------------------CGTTT-C----------------------GG--------------CC-AAG----CGATTGCATCCGAGTTTTGT---TCGGC----GAGCG-------C--GTTAC---------CACCT-----CTTTTA---A
droTak1	scf7180000415409:717280-717525 -		AGAGATAGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATCGC--------------------GCTC----GC--GT--GTGTGTGTGTGTAAGTAG--------------------------TTAT-----------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGCTACATATATCG---ATCTTT-----GCTAT--------CC---GATCTTTGCTTGGATTACCGGA-------------------------------------CGTTT-T----------------------G------------------------------------------------CCGGC----GAGCGAGCGCCGC--GTTAC---------CATAT-----CTTTTA---A
droEle1	scf7180000490967:318337-318605 -		AGAGATTGCAGCCATTGCCGGCGAGACTCTGAAAGCACATCGTGCTAAAGGTACATTAT--GCATTACA----------CTTAAGTTCAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC--------------------G------CGT--GT--GTGTGTGTGTGTAAGTAG--------------------------TTATA-C--------------------------------------------------------ATAGATCGTAAGATG---------------GCGCGGA----TATATCGCGGACTCTAGCACAGCTAA--------CC---GATCTTAGCTTTGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAGCAGTCGATTGCAGTCGAAATT------TCGGC----GAGCG-------C--GTTAC---------CAACT-----CTTTTA---A
droRho1	scf7180000780217:6821-7074 -		AGAGATTGCAGCCATTGCAGGCGAGACTTTGAAAGCACACCGTGCTAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGTTCGC----------------------------GTGT----GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGAACGTAAGATG---------------GCGCGGA----TATATCGCGGACTCTC-----GCTAT--------CC---GATCCTAGCTTTGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGCATTCGAACTT------TCGGC----GAGCG-------C--GCTTC---------CACTT-----CTTTTA---A
droFic1	scf7180000453580:5824-6081 -		AGAGATTGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTCAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGGTCGC----------------------------GCGC----GTGTGTGTGTGTAAGTAG--------------------------TTAT-----------------------------------------------------------ATAGATCGTAAGATG---------------GCGCGGA----TAAATCGCGGACTATT-----GGTAT--------CC---GATCCAAGCTTGGATGACCGGA-------------------------------------TCTTT-C----------------------GG--------------CC-AAT----CGATTGCAGTCGAACTT--T---CCGTC----GAACG-------C--GTATC---------CACCT-----CTTTTA---A
droKik1	scf7180000302255:259737-259976 +		AGAGATTGCGGCCATTGCAGGCGAGACATTGAAAGCGCACCGCGCCAAAGGTACATTATTTGCAATACA----------CTTAAGTTCAC---------------CCA-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGTGTTTATGTGAGTGTGTAAGTAG--------------------------TT-TA-T--------------------------------------------------------CTAG----------------------------------------------AAATATA-----GCCAT---------T---GATCCAAGATTGGATGACCC---------------------------------AGAAAAAA----TGAA-----T--------------------------------ACG----AAAACGAATACGAAT----A---TCGGC----GAGCG-------CGCGTTAA---------CACCT-----CTTTTAATAA
droAna3	scaffold_13340:15436235-15436499 -		AGAAATAGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCTAAAGGTACATTAT--ATATTACA----------CTTAAGTTTAC---------------CCCCAAAACCGAT-----------------------------------------------------------CTCTTGCAGCGAACTC--------------------G------CGT--GT--GTGTGTTTGTGTAAGTAA--------------------------T-ATA-CA----T----------------------------------------------A---ATAGAACGTAAGATG---------------TCGCGGA----TT----G---CCTTTC-----GCTTT--------CTTGAGATCCTGGCTGGAATGGCCC---------------------------------TGGCTACGTTA-G-----G---------TC-----GT------C-GGG--GCG-ATG----TGATC-----TGA----------TCG------CTGCG-------T--GTT-C---------CACATTCTATTTTTTA---A
droBip1	scf7180000396708:4595380-4595611 +		AGAAATTGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCCAAAGGTACATTAC--ACATTAAT----------CTTAAGTTTAT---------------CCC-CAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATATC--------------------G------CGT--GT--GTGTGTTTGTGTAAGTAA-----------------------------------------------------------------------------------------ATAGAACGTAAGAA---------------------------------------------------------------------CCAAGCTGGAATGGTCC---------------------------------TGGCTCCGTTA-G-----G---------TC-----GG-------------GCA-ATG----AGATCGCATCCGTAA----T---GCGGC----GAGCG-------T--GTT-C---------CACCTAATTATTTTTA---A
dp5	2:22534686-22534969 +		AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTCG--CGTGTGTTT-TGTTGGTGTGTAAGTAG--------------------------CT---------------------------------------------------------------AGAACATAAGATGACGGAAGATCTC----------T----CCAT---CGA-----------------------AC---GATCCTTGCTTGGAAGA--GAACTCTCCCCCTCGATCTCTTCCTCTCTCTTCCTGACTC-GTTAATGAAATCCCTGTGAGAT------GG-------------------------------------------C---TCGGC----GATCG-------C--GT-----------------------TCTTG---A
droPer2	scaffold_3:5313576-5313859 +		AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTCG--CGTGTGTTT-TGTTGGTGTGTAAGTAG--------------------------CT---------------------------------------------------------------AGAACATAAGATGACGGAAGATCTC----------T----CCAT---CGA-----------------------AC---GATCCTTGCTTGGAAGA--GAACTCTCCCCCTCACTCTCTTCCTCTCTCTTCCTGACTC-GTTAATGAAATCCCTGTGAGAT------GG-------------------------------------------C---TCGGC----GATCG-------C--GT-----------------------TCTTG---A
droWil2	scf2_1100000004943:3274783-3275065 +		AGAGATTGCAATCATTGCAAGTGAAACAATGAAAGCGCATCGCGCTAAAGGTACATTTA--GTTATAGA--------AATTTAAGTATAA---------------------AAACAATCCTTTCTCTATCCGATCACCCCGTCCGTCCCCCTCAACTCCTCCAACCTCCATCAGTTTATTTTACAGCGATTGT--------------------AAG----TGT--GT--GTTTGTGAGTGTAAGTAG--------------------------TT---------------------------------------------------------------AGAACTTAAGATG---------------ACTTGGA----C---TTGTGGACCAC---------------------------------------------------------------------------------------------------------------------ATTCTATTCCAAA-AAG----CGAAA--AGTAG-------------AGC----GCGCG-------T--GTTAATCTTATTTAAATTT-----TTTATA---A
droVir3	scaffold_13047:1686516-1686820 +	dvi_15158	AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTAT--ATAAACTT----TAGAACATTAAGCTTAT---------------CGC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGACAAAATGTGTGTGA--AGCTGTGTG------TAT--GG--GTGTATGTGTGTAAGTACAAGTGTGTGTGCGATTGT-----------------------------CATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATTTT--AAAATAAGCCC---------------GCGCTGA----AATGTTTGGAATTGT--------------------------------------------------TC------------------------------------------------------------ACCTCATCCTGGG--AG--------------GAAGTCGTCCTTATT---TTGGC------GTG-------C--CTAAG---------CAATC-----GTTTTT---A
droMoj3	scaffold_6540:5704366-5704673 +		AGAGATTGCAGCTATTGCTACTGAAACACTCAAAGCGCATCGCGCTAAAGGTACTTTAT--ATCCTATT----------TAGAATATTAA---------------GAT-T-ATCGAAT-----------------------------------------------------------TTTTTACAGTGAGAACACATGTATGAGTGA------GTGTGAGTGT--GT--GTGCTTGTGTGTGAGTAT----GCGTGCGCGAGTGTGTAAGTACAAATGATATATTTGAATTTTTGATGGCTGTGAGGCACAAGCTCCAGTAAGTT--------------------------------GAGCCA----------T----ATTT---TGA-----------------------AT---GAAACCAGAGATGA---------------------------------------------------AAAG-----TATGGAAT-TATTCATCACCTCC-GAG--AG--------------GATGTCGTCTCTATC---GTGG----------------------------------------------TGTA---C
droGri2	scaffold_15074:6076444-6076585 -		AGAGATTGCAGCTATTGCTACTGAAACACTCCAAGCGCATCGCGCTAAAGGTACATT-T--ATATTAAAACTATAGAACGTTAAGCTTAT---------------CGC-C--ACAGAT-----------------------------------------------------------CTTTTACAGTGATACA--------------------ATTTTAGTGT--GT--GTCCATTTCTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGC----GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGA----TATATCGCGGA-----------------------AC---GATTGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAGCCGTGTTTTTT---CCGGCTTCACAGCT-------C--GTTAC---------CAACT-----CTTTTA---A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGA.........................................................................	22	1	1.00	1	0	0	1	0

droSim2

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGC----GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGA----TATATCGCGGA-----------------------TC---GATTGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAGCCGTGTTTTTT---CCGGCTTCACAGCG-------C--GTTAC---------CAACT-----CTTTTA---A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------TC---GATTGTAGCTTGGATGACCG...............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGGA-----------------------TC---GATTGTAGCTTGGAT....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTGCAGGCGAGACTCTAAAAGCACACCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT-C----------------------GG--------------CC-AAG----CGA..............................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................C----------------------------GCGC----GTGTGTGTGTGTA.................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGCTCGC--------------------GCT------C--GT--GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGA----TATATCGCGGA-----------------------TC---GATTGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAGTCGTGTTTTTT---CCGGCTTCACAGCG-------C--GTTAC---------CAACT-----CTTTTA---A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT---CCGGCTTCACAGCG-------C--GTTA..............................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGCAGCCATTGCAGGCGAGACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GA----TATATCGCGGA-----------------------TC---GATTGT.............................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................T--GTGTGTGTGTGTAAGTAG--------------------------..................................................................................................................................................................................................................................................................................................................................................	19	4	2.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTT---CCGGCTTCACAGC.............................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTGCAGCCATTGCAGGCGAGACTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ATAGATCGTAAGACG---------------GCGCGGA----T.........................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGG..........................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................TAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CGC--------------------GCT------C--GT--GTGTGTGTGTG...................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CT------C--GT--GTGTGTGTGTGTAAGTG.............................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGAGATTGCAACCATTGCAGGCGAGGCATTAAAAGCACACCGTGTTAAAGGTACATTAC--GCATTACA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGACCGC----------------------------GT------GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAAACG---------------GTGCGGA----TTTATCGCGGACTATT-----GCTAT--------TC---GATCGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGAGTGCAGCCGAGTTTATA---CCGGC----CAGCG-------C--GTTAT---------CACCT-----CTTTTA---A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................GAGGCATTAAAAGCACACCGTGTTAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................CTATT-----GCTAT--------TC---GATCGTAGCTT........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTTAT---------------CCC-AAAACCGAT-----------------------------------------------------------TTCTTCCAGCGATCGC----------------------------GTGTGT--GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGAT--CGTAAGATCGTAAGGCGCGGA----TATATCGCGGACTATT-----GCCATTCGAAGATTC---AATCGTAGCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGGAT-TGA----------ACGGC----CAGCG-------C--GTTAG---------CAACC----ACTTTTA---A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGCGCGGA----TATATCGCGGA...............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-TGA----------ACGGC----CAGCG-------C--GTTAG---------C...................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GTAAGGCGCGGA----TATATCGCGGA...............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................CTTCCAGCGATCGC----------------------------GTGTGT--GT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATTC---AATCGTAGCTTGGAC....................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTG...........................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTG...........................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CGTAAGATCGTAAGGCGCGG...............................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTAAGTAG--------------------------TT-------------------------------------------------------------ATAGATCGTAAGAT--...................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTG...........................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-........................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-TGA----------ACGGC----CAGCG-------C--GTT...............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------C..........................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGAAATTGCAGCCATTGCAGGCGAAACTCTGAAAGCACACCGCGCGAAAGGTACATTAT--ACATTACA----------CTTAAGTTCAT---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCTAGCGCTCGC--------------------GCGT----GA--GTGTATGTGTGTGTGTAAGTAG--------------------------TTATA-C--------------------------------------------------------ATATATAATAAGACA---------------GCGCGGA----TATATCGCGGACTATC-----GCTAT--------CC---AATCTAAGCGTGGATGACCGGA-------------------------------------CGTTT-C----------------------GG--------------CCAAAG----CGATTGCAGCCGAGTTTTTTTATTTGGC----GAGCG-------T--GCTAA---------AACCT-----TTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAGATTGCAGCCATTGCATCCGAGACCCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGT----GTGTGTGTGTGTAAGTAG--------------------------TTATAGCA----T--------------------------------------------------ATAGATCGTAAGAAG---------------GCGCGGATACGTATGTCGCGGACTA------------------------------AGGCTGGGATGACCCGA-------------------------------------CGTTT-C----------------------GG--------------CC-AAG----CGATTGCATCCGAGTTTTGT---TCGGC----GAGCG-------C--GTTAC---------CACCT-----CTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAGATAGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATCGC--------------------GCTC----GC--GT--GTGTGTGTGTGTAAGTAG--------------------------TTAT-----------------------------------------------------------ATAGATCGTAAGACG---------------GCGCGGCTACATATATCG---ATCTTT-----GCTAT--------CC---GATCTTTGCTTGGATTACCGGA-------------------------------------CGTTT-T----------------------G------------------------------------------------CCGGC----GAGCGAGCGCCGC--GTTAC---------CATAT-----CTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAGATTGCAGCCATTGCCGGCGAGACTCTGAAAGCACATCGTGCTAAAGGTACATTAT--GCATTACA----------CTTAAGTTCAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC--------------------G------CGT--GT--GTGTGTGTGTGTAAGTAG--------------------------TTATA-C--------------------------------------------------------ATAGATCGTAAGATG---------------GCGCGGA----TATATCGCGGACTCTAGCACAGCTAA--------CC---GATCTTAGCTTTGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAGCAGTCGATTGCAGTCGAAATT------TCGGC----GAGCG-------C--GTTAC---------CAACT-----CTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAGATTGCAGCCATTGCAGGCGAGACTTTGAAAGCACACCGTGCTAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGTTCGC----------------------------GTGT----GTGTGTGTGTGTAAGTAG--------------------------TT-------------------------------------------------------------ATAGAACGTAAGATG---------------GCGCGGA----TATATCGCGGACTCTC-----GCTAT--------CC---GATCCTAGCTTTGATGACCGGA-------------------------------------TGTTT-C----------------------GG--------------CC-AAG----CGATTGCATTCGAACTT------TCGGC----GAGCG-------C--GCTTC---------CACTT-----CTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGAGATTGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTCAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGGTCGC----------------------------GCGC----GTGTGTGTGTGTAAGTAG--------------------------TTAT-----------------------------------------------------------ATAGATCGTAAGATG---------------GCGCGGA----TAAATCGCGGACTATT-----GGTAT--------CC---GATCCAAGCTTGGATGACCGGA-------------------------------------TCTTT-C----------------------GG--------------CC-AAT----CGATTGCAGTCGAACTT--T---CCGTC----GAACG-------C--GTATC---------CACCT-----CTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGAGATTGCGGCCATTGCAGGCGAGACATTGAAAGCGCACCGCGCCAAAGGTACATTATTTGCAATACA----------CTTAAGTTCAC---------------CCA-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGTGTTTATGTGAGTGTGTAAGTAG--------------------------TT-TA-T--------------------------------------------------------CTAG----------------------------------------------AAATATA-----GCCAT---------T---GATCCAAGATTGGATGACCC---------------------------------AGAAAAAA----TGAA-----T--------------------------------ACG----AAAACGAATACGAAT----A---TCGGC----GAGCG-------CGCGTTAA---------CACCT-----CTTTTAATAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGAAATAGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCTAAAGGTACATTAT--ATATTACA----------CTTAAGTTTAC---------------CCCCAAAACCGAT-----------------------------------------------------------CTCTTGCAGCGAACTC--------------------G------CGT--GT--GTGTGTTTGTGTAAGTAA--------------------------T-ATA-CA----T----------------------------------------------A---ATAGAACGTAAGATG---------------TCGCGGA----TT----G---CCTTTC-----GCTTT--------CTTGAGATCCTGGCTGGAATGGCCC---------------------------------TGGCTACGTTA-G-----G---------TC-----GT------C-GGG--GCG-ATG----TGATC-----TGA----------TCG------CTGCG-------T--GTT-C---------CACATTCTATTTTTTA---A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TGATC-----TGA----------TCG------CTGCG-------T--GTT-..............................	21	1	2.00	2	0	0	0	0	0	2
.....TAGCTGCCATTGCTGGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-G-----G---------TC-----GT------C-GGG--GCG-ATG----TGATC-----.......................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGATCCTGGCTGGAATGGC.................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TGATC-----TGA----------TCG------CTGCG-------T--G.................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AAGATG---------------TCGCGGA----TT----G---CCTTT...........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................A---ATAGAACGTAAGATG---------------TCGC.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----TGA----------TCG------CTGCG-------T--GTT-C---------CACA................	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCC---------------------------------TGGCTACGTTA-G-----G---------..................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

AGAAATTGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCCAAAGGTACATTAC--ACATTAAT----------CTTAAGTTTAT---------------CCC-CAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATATC--------------------G------CGT--GT--GTGTGTTTGTGTAAGTAA-----------------------------------------------------------------------------------------ATAGAACGTAAGAA---------------------------------------------------------------------CCAAGCTGGAATGGTCC---------------------------------TGGCTCCGTTA-G-----G---------TC-----GG-------------GCA-ATG----AGATCGCATCCGTAA----T---GCGGC----GAGCG-------T--GTT-C---------CACCTAATTATTTTTA---A	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTCG--CGTGTGTTT-TGTTGGTGTGTAAGTAG--------------------------CT---------------------------------------------------------------AGAACATAAGATGACGGAAGATCTC----------T----CCAT---CGA-----------------------AC---GATCCTTGCTTGGAAGA--GAACTCTCCCCCTCGATCTCTTCCTCTCTCTTCCTGACTC-GTTAATGAAATCCCTGTGAGAT------GG-------------------------------------------C---TCGGC----GATCG-------C--GT-----------------------TCTTG---A	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................TAG--------------------------CT---------------------------------------------------------------AGAACATAAGATGACGGA...............................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................GAAGATCTC----------T----CCAT---CGA-----------------------AC---GA.................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTAAGTAG--------------------------CT---------------------------------------------------------------AGAACATAAGATGACGG................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................GACGGAAGATCTC----------T----CCAT---CGA-----------------------AC---GAT................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTGCTTGGAAGA--G...............................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AA---------------------CTCG--CGTGTGTTT-TGTTGG.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTCG--CGTGTGTTT-TGTTGGTGTGTAAGTAG--------------------------CT---------------------------------------------------------------AGAACATAAGATGACGGAAGATCTC----------T----CCAT---CGA-----------------------AC---GATCCTTGCTTGGAAGA--GAACTCTCCCCCTCACTCTCTTCCTCTCTCTTCCTGACTC-GTTAATGAAATCCCTGTGAGAT------GG-------------------------------------------C---TCGGC----GATCG-------C--GT-----------------------TCTTG---A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGAGAT------GG-------------------------------------------C---TCGGC----GATCG-------C--GT-----------------------.........	26	1	1.00	1	0	1	0	0	0	0

droWil2

AGAGATTGCAATCATTGCAAGTGAAACAATGAAAGCGCATCGCGCTAAAGGTACATTTA--GTTATAGA--------AATTTAAGTATAA---------------------AAACAATCCTTTCTCTATCCGATCACCCCGTCCGTCCCCCTCAACTCCTCCAACCTCCATCAGTTTATTTTACAGCGATTGT--------------------AAG----TGT--GT--GTTTGTGAGTGTAAGTAG--------------------------TT---------------------------------------------------------------AGAACTTAAGATG---------------ACTTGGA----C---TTGTGGACCAC---------------------------------------------------------------------------------------------------------------------ATTCTATTCCAAA-AAG----CGAAA--AGTAG-------------AGC----GCGCG-------T--GTTAATCTTATTTAAATTT-----TTTATA---A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................ATAA---------------------AAACAATCCTTTCTCTATCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................GAACTTAAGATG---------------ACTTGGA----C---......................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
........................................................................................................................TTTCTCTATCCGATCACCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................G----TGT--GT--GTTTGTGAGTGTAAGT..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................GT--------------------AAG----TGT--GT--GTTTGTGAGTGTAAGTA.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAAA-AAG----CGAAA--AGTAG-------------AGC----G................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................GTTTATTTTACAGCGATTGT--------------------AAG----TGT--..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............ATTGCAAGTGAAACAATGAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................AG----TGT--GT--GTTTGTGAGTG...................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0

droVir3

AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTAT--ATAAACTT----TAGAACATTAAGCTTAT---------------CGC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGACAAAATGTGTGTGA--AGCTGTGTG------TAT--GG--GTGTATGTGTGTAAGTACAAGTGTGTGTGCGATTGT-----------------------------CATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATTTT--AAAATAAGCCC---------------GCGCTGA----AATGTTTGGAATTGT--------------------------------------------------TC------------------------------------------------------------ACCTCATCCTGGG--AG--------------GAAGTCGTCCTTATT---TTGGC------GTG-------C--CTAAG---------CAATC-----GTTTTT---A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................GC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GTGTGTGA--AGCTGTGTG------TAT--G.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGG--AG--------------GAAGTCGTCCTT................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CAAAATGTGTGTGA--AGCTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTAAGTACAAGTGTGTGTGC................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------GAAGTCGTCCTTATT---TTGGC------...............................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTGA--AGCTGTGTG------TAT--GG--GTG...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGGAATTGT--------------------------------------------------TC------------------------------------------------------------ACCTCAT....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTAAGTACAAGTGTGTGTGCGAT.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGTGA--AGCTGTGTG------TAT--GG--GT............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGA--AGCTGTGTG------TAT--GG--GTGT..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	42	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TGTGGCAAAAGCTCAAGTAAG................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GAATTGT--------------------------------------------------TC------------------------------------------------------------ACCTCATCCT.................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------------GAAGTCGTCCTTATT---TTGG......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TACAGTGACAAAATGTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGCGATTGT-----------------------------CATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGC..........................................................................................................................................................................................................................................................................................	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................CTCAAAGCGCATCGCGCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTGA--AGCTGTGTG------TAT--GG--GTGT..........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TGAGCCATAATTTT--AAAATAA........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CTGTGTG------TAT--GG--GTGTATGTG.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CTGA----AATGTTTGGAATTGT--------------------------------------------------TC------------------------------------------------------------...........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................TAAAGGTACATTAT--ATAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTGTGA--AGCTGTGTG------TAT--GG--..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGC------GTG-------C--CTAAG---------CAATC-----GTT.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGACAAAATGTGTGTGA--AGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AAATGTGTGTGA--AGCTGTGTG------.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................A--AGCTGTGTG------TAT--GG--GTGTAT........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AAACTT----TAGAACATTAAGCTTAT---------------CGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTAAGTACAAGTGTGTGTGC................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGTGTG------TAT--GG--GTGTATGTG.....................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GTGTG------TAT--GG--GTGTATGT......................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGAGATTGCAGCTATTGCTACTGAAACACTCAAAGCGCATCGCGCTAAAGGTACTTTAT--ATCCTATT----------TAGAATATTAA---------------GAT-T-ATCGAAT-----------------------------------------------------------TTTTTACAGTGAGAACACATGTATGAGTGA------GTGTGAGTGT--GT--GTGCTTGTGTGTGAGTAT----GCGTGCGCGAGTGTGTAAGTACAAATGATATATTTGAATTTTTGATGGCTGTGAGGCACAAGCTCCAGTAAGTT--------------------------------GAGCCA----------T----ATTT---TGA-----------------------AT---GAAACCAGAGATGA---------------------------------------------------AAAG-----TATGGAAT-TATTCATCACCTCC-GAG--AG--------------GATGTCGTCTCTATC---GTGG----------------------------------------------TGTA---C	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................CTGAAACACTCAAAGCGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................GA------GTGTGAGTGT--GT--GTGCTT........................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0

droGri2

AGAGATTGCAGCTATTGCTACTGAAACACTCCAAGCGCATCGCGCTAAAGGTACATT-T--ATATTAAAACTATAGAACGTTAAGCTTAT---------------CGC-C--ACAGAT-----------------------------------------------------------CTTTTACAGTGATACA--------------------ATTTTAGTGT--GT--GTCCATTTCTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_520

scaffold_0:14191931-14192081 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads