dse_50

GCTTCTACTATCTACTTCATTGCTTTGCATATGATATGTTGCAGTAATTTAGTAATACCTTTCGAACATATGATTTTCAGTCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGATGAGGAATTACTTGTGATGT *********************************((((((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..))))))))).)))))**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	M054 female body	V115 head	V114 embryo
.......................................................................................TGAGTTCGTTAGGTATTATCT...................................................	21	0	1	361.00	361	225	83	30	23
.......................................................................................TGAGTTCGTTAGGTATTATCTA..................................................	22	0	1	224.00	224	134	63	17	10
.......................................................................................TGAGTTCGTTAGGTATTATCTAA.................................................	23	1	1	75.00	75	57	5	5	8
.......................................................................................TGAGTTCGTTAGGTATTATCTAT.................................................	23	1	1	71.00	71	64	6	0	1
......................................................................................ATGAGTTCGTTAGGTATTATCT...................................................	22	0	1	65.00	65	51	10	2	2
.......................................................................................TGAGTTCGTTAGGTATTATC....................................................	20	0	1	32.00	32	26	1	4	1
..................................................AGTAATACCTTTCGAACATATG.......................................................................................	22	0	1	32.00	32	6	25	0	1
.......................................................................................TGAGTTCGTTAGGTATTATCTAAA................................................	24	2	1	26.00	26	18	5	0	3
.......................................................................................TGAGTTCGTTAGGTATTATCTAG.................................................	23	0	1	23.00	23	22	0	1	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAGT................................................	24	0	1	19.00	19	5	9	5	0
..................................................AGTAATACCTTTCGAACATATGA......................................................................................	23	0	1	18.00	18	0	18	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAAAA...............................................	25	3	1	14.00	14	12	1	0	1
.......................................................................................TGAGTTCGTTAGGTATTATCTAC.................................................	23	1	1	14.00	14	12	1	0	1
......................................................................................ATGAGTTCGTTAGGTATTATC....................................................	21	0	1	12.00	12	8	1	2	1
..................................................AGTAATACCTTTCGAACATAT........................................................................................	21	0	1	6.00	6	4	1	1	0
.......................................................................................TGAGTTCGTTAGGTATTATCTATA................................................	24	2	1	5.00	5	5	0	0	0
........................................................................................GAGTTCGTTAGGTATTATCT...................................................	20	0	1	5.00	5	0	5	0	0
................................................TTAGTAATACCTTTCGAACATA.........................................................................................	22	0	1	5.00	5	1	4	0	0
.......................................................................................TGAGTTCGTTAGGTATTACCT...................................................	21	1	1	5.00	5	5	0	0	0
......................................................................................ATGAGTTCGTTAGGTATTAT.....................................................	20	0	1	4.00	4	4	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAAAAA..............................................	26	3	1	4.00	4	2	1	0	1
.........................................................................................AGTTCGTTAGGTATTATCTAG.................................................	21	0	1	3.00	3	3	0	0	0
........................................................................................GAGTTCGTTAGGTATTATCTAT.................................................	22	1	1	3.00	3	1	2	0	0
.......................................................................................TGAGTTCGTTAGGTATTAT.....................................................	19	0	1	3.00	3	2	0	0	1
.........................................................................................AGTTCGTTAGGTATTATCTAGT................................................	22	0	1	3.00	3	2	1	0	0
.................................................TAGTAATACCTTTCGAACATAT........................................................................................	22	0	1	3.00	3	0	3	0	0
.......................................................................................TGAGTTCGTTAGGTATTACCTA..................................................	22	1	1	3.00	3	3	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTACT................................................	24	1	1	3.00	3	2	0	1	0
.......................................................................................TGAGTTCGTTAGGTATTAGCT...................................................	21	1	1	2.00	2	2	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTACCTAT.................................................	23	2	1	2.00	2	2	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATAAAA.................................................	23	3	1	2.00	2	1	1	0	0
.......................................................................................TGAGTTCGTTAGGTATTAGCTA..................................................	22	1	1	2.00	2	2	0	0	0
.......................................................................................TGAGTTTGTTAGGTATTATCTAA.................................................	23	2	1	2.00	2	0	0	0	2
......................................................................................ATGAGTTCGTTAGGTATTATCTAA.................................................	24	1	1	2.00	2	2	0	0	0
........................................................................................GAGTTCGTTAGGTATTATCTAG.................................................	22	0	1	2.00	2	1	1	0	0
.......................................................................................TGAGATCGTTAGGTATTATCT...................................................	21	1	1	2.00	2	2	0	0	0
...................................................GTAATACCTTTCGAACATATG.......................................................................................	21	0	1	2.00	2	0	2	0	0
.......................................................................................TGAGTTCGTTAGGAATTATCT...................................................	21	1	1	2.00	2	0	2	0	0
..................................................AGTAATACCTTTCGAACATATGT......................................................................................	23	1	1	2.00	2	2	0	0	0
.......................................................................................TGATTTCGTTAGGTATTATCTA..................................................	22	1	1	2.00	2	2	0	0	0
.......................................................................................TGAGTTCGTTCGGTATTATCT...................................................	21	1	1	2.00	2	0	2	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTATAT...............................................	25	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAGA................................................	24	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTAACTA..................................................	22	1	1	1.00	1	1	0	0	0
...................................................GTAATACCTTTCGAACATAT........................................................................................	20	0	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTATGTATTATCT...................................................	21	1	1	1.00	1	1	0	0	0
......................................................................................ATGAGTTCGTTAGGTTTTATCT...................................................	22	1	1	1.00	1	1	0	0	0
........................................................................................GAGTTCGTTAGGTATTATAT...................................................	20	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCATTAGGTATTATCTA..................................................	22	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGGATTATCTA..................................................	22	1	1	1.00	1	0	1	0	0
......................................................................................ATGAGTTCGTCAGGTATTATC....................................................	21	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTATC................................................	24	2	1	1.00	1	1	0	0	0
........................................................................................GAGTTCGTTAGGTATTATCTATT................................................	23	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTATGTATTATCTA..................................................	22	1	1	1.00	1	0	1	0	0
.......................................................................................TCAGTTCGTTAGGTATTATCTA..................................................	22	1	1	1.00	1	1	0	0	0
......................................................................................ATGAGTTCGTTAGGTATTATCTT..................................................	23	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTAA.....................................................	19	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCCAT.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAGTAA..............................................	26	1	1	1.00	1	1	0	0	0
..................................................AGTCATACCTTTCGAACATATG.......................................................................................	22	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGTATTACCTT..................................................	22	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGAATTATCTAA.................................................	23	2	1	1.00	1	1	0	0	0
........................................................................................GAGTTCGTTAGGTATTATCTAAT................................................	23	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTCGGTATTATCTCG.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTAACTAA.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTACTATC....................................................	20	1	1	1.00	1	1	0	0	0
.........................................................................................TCTTCGTTAGGTATTATCTA..................................................	20	2	1	1.00	1	0	0	1	0
................................................TTAGTAATACCTTTCGAACAT..........................................................................................	21	0	1	1.00	1	0	0	1	0
.......................................................................................TGAGTTCGTTAGGTATTATCTATAAA..............................................	26	3	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAAT................................................	24	1	1	1.00	1	1	0	0	0
......................................................................................ATGAGTTCGTTAGGTATTTTC....................................................	21	1	1	1.00	1	1	0	0	0
..................................................AGGAATACCTTTCGAACATATG.......................................................................................	22	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAAGTATTATCTAT.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCTTTAGGTATTATCTA..................................................	22	1	1	1.00	1	0	0	1	0
.......................................................................................TGAGTTAGTTAGGTATTATCT...................................................	21	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGCTATTATCT...................................................	21	1	1	1.00	1	1	0	0	0
..................................................AGTAATACCTTTCGAACATA.........................................................................................	20	0	1	1.00	1	0	1	0	0
......................................................................................ATGATTTCGTTAGGTACTATCT...................................................	22	2	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGTATTCTCT...................................................	21	1	1	1.00	1	0	1	0	0
.......................................................................................TGACTTCGTTAGGTATTATCT...................................................	21	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGGATTATCT...................................................	21	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGATAGGTATTATCTA..................................................	22	1	1	1.00	1	0	1	0	0
......................................................................................ATTAGTTCGTTAGGTATTATCT...................................................	22	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGCTAGGTATTATCTA..................................................	22	1	1	1.00	1	1	0	0	0
................................................TTAGTAATCCCTTTCGAACATA.........................................................................................	22	1	1	1.00	1	0	1	0	0
..........................................................................................GTTCGTTAGGTATTATCTGGT................................................	21	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGTCTTATCT...................................................	21	1	1	1.00	1	0	0	1	0
.......................................................................................TGAGTTCGTTAGGTGTTATCT...................................................	21	1	1	1.00	1	1	0	0	0
................................................TTAGTAATACCTTTCGAACA...........................................................................................	20	0	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGTACTATCTAA.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTAACT...................................................	21	1	1	1.00	1	1	0	0	0
......................................................................................ATGAGTTCGTTAGGTATTA......................................................	19	0	1	1.00	1	0	0	1	0
.......................................................................................TGAGTTCGTTAGGTATTATCTGT.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGGATTCTCT...................................................	21	2	1	1.00	1	0	1	0	0
..................................................AGGAATACCTTTCGAACATATGA......................................................................................	23	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGAATTATCTA..................................................	22	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGTTATTATCTAA.................................................	23	2	1	1.00	1	1	0	0	0
..................................................AGTAATACCCTTCGAACATATGA......................................................................................	23	1	1	1.00	1	0	1	0	0
..................................................TGTAATACCTTTCGAACATATG.......................................................................................	22	1	1	1.00	1	0	1	0	0
......................................................................................ATGAGTTCGTTAGGTATAATCT...................................................	22	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCTTTAGGTATTATCT...................................................	21	1	1	1.00	1	0	0	1	0
.......................................................................................AGAGTTCGTTAGGTATTATCTA..................................................	22	1	1	1.00	1	1	0	0	0
..................................................AGTAATAACTTTCGAACATATG.......................................................................................	22	1	1	1.00	1	0	1	0	0
.........................................................................................AGTTCGTTAGGTATTATCTAGG................................................	22	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGCTATTATC....................................................	20	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAGTT...............................................	25	0	1	1.00	1	1	0	0	0
........................................................................................GAGTTCGTTAGGTATTATCTA..................................................	21	0	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGCATTATCTAA.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTAGGTCTTAACTAA.................................................	23	3	1	1.00	1	1	0	0	0
.......................................................................................TGAGCTCGTTAGGTATTATCT...................................................	21	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGATCGTTAGGTATTATCTAT.................................................	23	2	1	1.00	1	1	0	0	0
.......................................................................................TGATTTCGTTAGGTATTATCT...................................................	21	1	1	1.00	1	0	1	0	0
.......................................................................................TGAGTTCGTTAGGTATTATCTAGTA...............................................	25	1	1	1.00	1	1	0	0	0
.......................................................................................TGAGTTCGTTGGGTATTATCTACA................................................	24	3	2	0.50	1	1	0	0	0

CGAAGATGATAGATGAAGTAACGAAACGTATACTATACAACGTCATTAAATCATTATGGAAAGCTTGTATACTAAAAGTCAGTAAGTACTCAAGCAATCCATAATAGATCAATAACATTTGTAAGTTGAGCGACCGCCTACTCCTTAATGAACACTACA **********************************((((((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..))))))))).)))))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo
................................................AATCATTATGGAAAGCTTGTAT.........................................................................................	22	0	1	1.00	1	1

Species	Coordinate	ID	Type	Alignment
droSec2	scaffold_4:2462190-2462348 +	dse_50	confident	GCTTCTACTATCTACTTCATTGCTTTGCATATGA---TATGTTGCAGTAATTTAGTAAT----ACCTTTCGAACATATGATTTTCAG-TCATTC----------------------------ATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGAT-----GAGGAATTACTTGTGATGT
droSim2	x:3957163-3957321 -	dsi-mir-983	Known_mirbase	GCTTCTACTCTCTACTTCATTGCTTTGCATATGA---TATCTTGCAGTAATTTAGTAAT----ACCTTTCGAACACATGATTTTCAG-TCATTC----------------------------ATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGAT-----GAGGAATTACTTGTGATGT
dm3	chrX:4262307-4262444 -	dme-mir-983-1	Known_mirbase	TG-------------------------CATATGCTATTATATTGCAATAATTAAATAAT----ACGTTTCGAACTAATGATTTTCAGTTCATTC----------------------------ATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCGTAT-----GAGAAATTACTTATGATGT
droEre2	scaffold_4690:1633092-1633244 -	der_27	confident	GCTTAAATCCACCG---GAATTGTGTG---ATAT---TATGTTACAGTGATTTAATAAT----TCGATTCGAAGTTATGTGCTTTAA-TCATTC----------------------------ATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCGTGT-----GAGAAATTGCTCATGATAT
droBia1	scf7180000301703:495517-495574 +			TTTCAAACGCA---------------------------------------------------------------------TTTCCAA-TCATTA----------------------------GAAAGTTCGTTACGTACTATTTGCTCGGTTTAAA--------------------------------------------
droTak1	scf7180000415394:1159660-1159713 +			TGTTTTAGTGACTGGTTCA---G----TATCAAC---TATGTTTC--TAATTCAGTTGT----ACTTTTC----------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453901:210006-210183 +			ATACCTATAACAAATATTA----TTTACCCATCA---T-TGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTAGTTTGGGAGCTTTGGTTATAACATCAATGTAACAATTGACTACAAATTAACAAA-------------TCAATTTATATGTGGATATTCACAGCCACTATTTGTCATAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

GCTTCTACTATCTACTTCATTGCTTTGCATATGA---TATGTTGCAGTAATTTAGTAAT----ACCTTTCGAACATATGATTTTCAG-TCATTC----------------------------ATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGAT-----GAGGAATTACTTGTGATGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................TGAGTTCGTTAGGTATTATCT........................................................	21	1	361.00	361	83	225	23	30
...........................................................................................................................TGAGTTCGTTAGGTATTATCTA.......................................................	22	1	224.00	224	63	134	10	17
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAA......................................................	23	1	75.00	75	5	57	8	5
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAT......................................................	23	1	71.00	71	6	64	1	0
..........................................................................................................................ATGAGTTCGTTAGGTATTATCT........................................................	22	1	65.00	65	10	51	2	2
...........................................................................................................................TGAGTTCGTTAGGTATTATC.........................................................	20	1	32.00	32	1	26	1	4
.....................................................AGTAAT----ACCTTTCGAACATATG.........................................................................................................................	22	1	32.00	32	25	6	1	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAA.....................................................	24	1	26.00	26	5	18	3	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAG......................................................	23	1	23.00	23	0	22	0	1
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGT.....................................................	24	1	19.00	19	9	5	0	5
.....................................................AGTAAT----ACCTTTCGAACATATGA........................................................................................................................	23	1	18.00	18	18	0	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA....................................................	25	1	14.00	14	1	12	1	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAC......................................................	23	1	14.00	14	1	12	1	0
..........................................................................................................................ATGAGTTCGTTAGGTATTATC.........................................................	21	1	12.00	12	1	8	1	2
.....................................................AGTAAT----ACCTTTCGAACATAT..........................................................................................................................	21	1	6.00	6	1	4	0	1
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATA.....................................................	24	1	5.00	5	0	5	0	0
............................................................................................................................GAGTTCGTTAGGTATTATCT........................................................	20	1	5.00	5	5	0	0	0
...................................................TTAGTAAT----ACCTTTCGAACATA...........................................................................................................................	22	1	5.00	5	4	1	0	0
..........................................................................................................................ATGAGTTCGTTAGGTATTAT..........................................................	20	1	4.00	4	0	4	0	0
.............................................................................................................................AGTTCGTTAGGTATTATCTAG......................................................	21	1	3.00	3	0	3	0	0
............................................................................................................................GAGTTCGTTAGGTATTATCTAT......................................................	22	1	3.00	3	2	1	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTAT..........................................................	19	1	3.00	3	0	2	1	0
.............................................................................................................................AGTTCGTTAGGTATTATCTAGT.....................................................	22	1	3.00	3	1	2	0	0
....................................................TAGTAAT----ACCTTTCGAACATAT..........................................................................................................................	22	1	3.00	3	3	0	0	0
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTAA......................................................	24	1	2.00	2	0	2	0	0
............................................................................................................................GAGTTCGTTAGGTATTATCTAG......................................................	22	1	2.00	2	1	1	0	0
......................................................GTAAT----ACCTTTCGAACATATG.........................................................................................................................	21	1	2.00	2	2	0	0	0
.....................................................AGTAAT----ACCTTTCGAACATATGT........................................................................................................................	23	1	2.00	2	0	2	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGA.....................................................	24	1	1.00	1	0	1	0	0
......................................................GTAAT----ACCTTTCGAACATAT..........................................................................................................................	20	1	1.00	1	1	0	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTATC.....................................................	24	1	1.00	1	0	1	0	0
..........................................................................................................................ATGAGTTCGTTAGGTATTATCTT.......................................................	23	1	1.00	1	0	1	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTAA..........................................................	19	1	1.00	1	0	1	0	0
...................................................TTAGTAAT----ACCTTTCGAACAT............................................................................................................................	21	1	1.00	1	0	0	0	1
.....................................................AGTAAT----ACCTTTCGAACATA...........................................................................................................................	20	1	1.00	1	1	0	0	0
...................................................TTAGTAAT----ACCTTTCGAACA.............................................................................................................................	20	1	1.00	1	1	0	0	0
..........................................................................................................................ATGAGTTCGTTAGGTATTA...........................................................	19	1	1.00	1	0	0	0	1
...........................................................................................................................TGAGTTCGTTAGGTATTATCTGT......................................................	23	1	1.00	1	0	1	0	0
.............................................................................................................................AGTTCGTTAGGTATTATCTAGG.....................................................	22	1	1.00	1	1	0	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT....................................................	25	1	1.00	1	0	1	0	0
............................................................................................................................GAGTTCGTTAGGTATTATCTA.......................................................	21	1	1.00	1	1	0	0	0
...........................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA....................................................	25	1	1.00	1	0	1	0	0

droSim2

GCTTCTACTCTCTACTTCATTGCTTTGCATATGA---TATCTTGCAGTAATTTAGTAAT----ACCTTTCGAACACATGATTTTCAG-TCATTC----------------------------ATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGAT-----GAGGAATTACTTGTGATGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................TGAGTTCGTCAGGTATTATCT........................................................	21	1	6722.00	6722	27	340	57	1	227	8	33	25	17	9	60	2	29	5887	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCT........................................................	22	1	6446.00	6446	100	1229	394	1	397	3	22	21	4	3	83	0	18	4161	0	2	8
..........................................................................................................................ATGAGTTCGTCAGGTATTATC.........................................................	21	1	2808.00	2808	25	353	63	0	108	1	5	4	3	0	62	1	1	2181	0	0	1
.....................................................AGTAAT----ACCTTTCGAACACATG.........................................................................................................................	22	1	2195.00	2195	2	43	3	9	1069	16	174	193	101	68	39	8	1	469	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGA........................................................................................................................	23	1	1858.00	1858	2	28	26	7	694	17	123	92	43	25	27	5	4	765	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTAT..........................................................	20	1	1737.00	1737	0	4	0	0	21	1	0	3	1	0	1	0	1	1704	0	0	1
...........................................................................................................................TGAGTTCGTCAGGTATTATCTA.......................................................	22	1	1568.00	1568	5	132	68	0	174	5	39	34	25	7	38	1	7	1032	0	0	1
.....................................................AGTAAT----ACCTTTCGAACACA...........................................................................................................................	20	1	947.00	947	2	12	0	2	872	27	3	2	5	3	2	0	0	17	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACAT..........................................................................................................................	21	1	893.00	893	9	27	6	1	660	16	13	8	8	4	3	0	1	137	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAT......................................................	23	1	399.00	399	1	9	2	0	0	0	0	3	1	1	19	1	2	360	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTA...........................................................	19	1	358.00	358	0	3	0	0	130	0	0	0	0	0	1	0	0	224	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATC.........................................................	20	1	269.00	269	4	31	5	0	63	1	1	3	0	0	7	1	0	153	0	0	0
.....................................................AGTAAT----ACCTTTCGAACAC............................................................................................................................	19	1	238.00	238	0	1	0	0	228	1	0	2	0	0	0	0	0	6	0	0	0
.....................................................AGTAAT----ACCTTTCGAACA.............................................................................................................................	18	1	194.00	194	0	0	0	0	185	6	0	1	0	0	1	0	0	1	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAA......................................................	23	1	191.00	191	0	16	15	0	0	0	4	1	5	1	5	0	0	144	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTAT..........................................................	19	1	165.00	165	0	0	0	0	23	0	0	0	1	0	2	0	0	139	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAAA......................................................................................................................	25	1	136.00	136	0	10	6	0	0	0	34	12	29	8	4	1	0	32	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTA...........................................................	18	1	120.00	120	0	0	0	0	117	1	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTT.......................................................	22	1	105.00	105	0	2	0	0	0	0	0	0	0	0	0	0	0	103	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCC........................................................	22	1	84.00	84	7	55	20	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAT.......................................................................................................................	24	1	78.00	78	2	6	0	0	38	3	1	0	2	1	0	0	0	25	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGT........................................................................................................................	23	1	75.00	75	0	10	1	0	0	0	0	0	1	0	2	0	0	61	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAA.......................................................................................................................	24	1	72.00	72	0	3	2	0	0	0	5	4	2	2	1	0	0	53	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTT.......................................................	23	1	72.00	72	0	12	0	0	0	0	0	0	0	0	0	0	0	60	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCA........................................................	22	1	56.00	56	0	5	0	0	0	0	0	1	0	0	1	0	0	49	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTA.......................................................	23	1	52.00	52	0	9	1	0	1	0	1	3	5	1	3	0	2	26	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.....................................................	24	1	45.00	45	0	4	1	0	0	0	0	2	14	3	4	0	1	16	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTAA..........................................................	20	1	38.00	38	0	2	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTT...........................................................	19	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATT............................................................	18	1	33.00	33	0	3	1	0	24	0	0	0	0	0	3	0	0	2	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAAAA.....................................................................................................................	26	1	28.00	28	0	1	1	0	0	0	1	2	2	0	0	0	0	21	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATT.........................................................	21	1	27.00	27	1	0	1	0	0	0	0	0	0	0	0	0	0	25	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCA........................................................	21	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCG........................................................	22	1	24.00	24	2	16	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATA.........................................................	21	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGC........................................................................................................................	23	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATAA........................................................	22	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCC........................................................	21	1	19.00	19	3	11	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGG........................................................................................................................	23	1	16.00	16	0	12	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATA.........................................................	20	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATA.........................................................................................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA....................................................	25	1	10.00	10	0	0	0	1	0	0	1	1	3	1	2	0	0	1	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATT.........................................................	20	2	10.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATAA........................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTA..............................................................	15	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCG........................................................	21	1	9.00	9	0	3	2	0	0	0	1	0	0	0	0	0	0	3	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTT......................................................	23	1	9.00	9	0	3	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTT......................................................	24	1	9.00	9	0	4	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATAA....................................................	25	1	9.00	9	0	0	0	0	0	0	0	0	1	0	0	0	0	8	0	0	0
............................................................................................................................GAGTTCGTCAGGTATTATCT........................................................	20	1	9.00	9	0	0	0	0	5	0	0	0	0	0	0	0	0	4	0	0	0
......................................................GTAAT----ACCTTTCGAACACATGA........................................................................................................................	22	1	8.00	8	0	0	0	1	6	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAC......................................................	23	1	8.00	8	0	3	1	0	0	0	0	0	0	0	2	0	0	2	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAG......................................................	23	1	7.00	7	0	1	0	0	1	0	0	0	0	0	0	0	0	5	0	0	0
..............................................................................................................................GTTCGTCAGGTATTATCT........................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
.........................................................AT----ACCTTTCGAACACATG.........................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0
......................................................GTAAT----ACCTTTCGAACACATG.........................................................................................................................	21	1	6.00	6	0	0	0	0	2	0	0	3	0	0	0	0	0	1	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTAA..........................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGT...............................................................	15	1	5.00	5	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTA..............................................................	16	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTATA.....................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.............................................................................................C----------------------------ATGAGTTCGTCAGGTATTATC.........................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACAA..........................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGTAA......................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.............................................................................................C----------------------------ATGAGTTCGTCAGGTATTATCT........................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................AAT----ACCTTTCGAACACATGA........................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGCA.......................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
......................................................GTAAT----ACCTTTCGAACACATGAT.......................................................................................................................	23	1	3.00	3	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TAAT----ACCTTTCGAACACATGA........................................................................................................................	21	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTG.......................................................	22	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGACA......................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAA......................................................	24	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTTA..........................................................	19	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
.............................................................................................................................AGTTCGTCAGGTATTATCT........................................................	19	1	2.00	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAAC......................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAA...............................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
............................................................................................................................GAGTTCGTCAGGTATTATC.........................................................	19	1	2.00	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGTA.......................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCAT.......................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATTA........................................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
................................................................CCTTTCGAACACATGA........................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................GTAAT----ACCTTTCGAACACAT..........................................................................................................................	20	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATT............................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTC.......................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTTA..........................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATT.........................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTAAA.........................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTG.......................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATAT...........................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................GAGTTCGTCAGGTATTATCTA.......................................................	21	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................AAT----ACCTTTCGAACACATG.........................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGATT......................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................AT----ACCTTTCGAACACATGA........................................................................................................................	19	1	2.00	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAG.......................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGTAG......................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.....................................................	25	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGATA......................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGAC.......................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTTA......................................................	23	2	1.50	3	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATTC........................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCAT.......................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTTA......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................TTTTCAG-TCATTC----------------------------ATGAGTTCGTCAGG................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTG...........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................TCGTCAGGTATTATCT........................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................TAAT----ACCTTTCGAACACATGAT.......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................GAGTTCGTCAGGTATTATCTT.......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACATGGA.......................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................TCGTCAGGTATTATCTA.......................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATCTAT......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................ATGAGTTCGTCAGGTATTATG.........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.....................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................GTAAT----ACCTTTCGAACACATGAAAA.....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................GTTCGTCAGGTATTATCTAT......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................AGTAAT----ACCTTTCGAACACAAA.........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................ACCTTTCGAACACATGA........................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

TG-------------------------CATATGCTATTATATTGCAATAATTAAATAAT----ACGTTTCGAACTAATGATTTTCAGTTCATTC----------------------------ATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCGTAT-----GAGAAATTACTTATGATGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................ATAAT----ACGTTTCGAACTAATGA........................................................................................................................	22	2	43492.50	86985	0	0	0	0	0	0	0	0	0	0	1	17	1	0	0	0	0	0	0	0	119	8	8	133	0	0	3	0	0	0	0	0	0	0	0	5	6	3	4	9	6	16	73	18	2	8	12	19	23	31	167	50	30	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	35	38	35	0	1	3	5	8	0	1	4	4	1	7	1	0	129	0	0	44	0	0	11	13	8	3	1	7	19	9	1	10	0	67	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	5	6	4	2	10	10	9	0	0	5	34	22	13	9	102	15	63	23	70	40	131	144	38	9	3	13	0	2	4	0	5	0	0	0	14	13	0	9	0	0	0	84	1	13	0	5	1	1	0	0	0	1	0	0	1	231	14	305	2	0	0	0	251	0	154	0	0	0	0	0	0	22	21	0	0	0	0	0	0	10	0	0	19	46	1973	94	319	388	489	1483	824	443	493	1474	441	6	1	355	14	3	0	0	7	2	0	9	1	22	39	21	5	301	6	16	147	144	7	2	65	7	1	153	6	36	78	3	1797	11	6	93	5	37	15	10	2	0	160	1116	69	471	1134	8118	309	2074	4	11	27	32	24908	10	4	4	0	799	516	124	255	7	2	249	698	103	339	258	35	136	288	22	96	175	647	968	18336	43	59	14	18	7345	41	16	5	68	7	85	30	395	44	44	33	20	32	71	219	693	39	4
......................................................ATAAT----ACGTTTCGAACTAATG.........................................................................................................................	21	2	17263.50	34527	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	34	2	3	148	0	0	0	0	1	0	0	0	0	0	0	2	6	9	3	3	3	10	39	3	4	3	2	6	4	6	45	11	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	19	18	30	0	4	4	0	1	0	1	3	1	2	6	0	1	91	0	1	40	2	0	18	10	6	3	0	4	7	8	1	4	1	24	0	0	0	13	0	0	0	0	1	0	3	0	1	0	0	0	2	0	0	0	6	8	0	0	0	0	0	0	2	7	5	0	6	3	13	3	8	8	36	3	16	23	33	4	2	2	1	0	3	0	0	2	0	0	10	4	0	11	0	0	1	67	1	11	1	3	0	8	4	0	0	0	0	0	1	284	9	299	1	0	0	0	216	0	114	0	0	0	0	0	0	2	14	0	0	0	2	0	0	4	0	4	10	15	626	77	43	93	209	667	66	76	88	288	11	0	0	11	0	0	0	0	3	0	0	3	0	14	13	15	2	148	4	7	100	109	4	1	40	2	2	118	1	38	36	5	1347	5	2	60	5	23	12	13	1	0	58	411	17	115	206	1351	44	331	6	7	12	5	11591	6	2	3	2	212	197	48	29	2	1	39	112	15	42	80	42	70	173	12	20	21	95	167	8393	10	15	14	4	3327	8	2	5	17	0	27	7	115	6	3	4	6	17	38	104	450	13	0
..........................................................................................................................ATTAGGTAGTTACGCATTATCT........................................................	22	2	15955.50	31911	0	0	0	0	0	1	0	0	0	0	0	15	0	0	0	0	0	1	0	0	223	9	3	5132	0	0	5	0	0	0	0	0	0	0	0	3	6	12	6	6	3	2	19	5	4	8	6	19	11	17	49	38	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	7	3	6	0	1	0	8	4	1	1	0	0	1	3	0	1	98	1	0	46	0	1	2	2	6	2	0	4	11	2	3	4	1	49	0	1	1	17	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	4	12	0	4	5	29	5	25	11	15	12	29	50	4	0	0	0	0	0	1	0	7	0	0	0	3	3	0	3	0	0	0	39	0	8	0	6	0	7	1	0	0	5	2	0	6	886	16	882	3	1	0	0	600	4	612	2	0	0	0	0	0	74	103	0	0	0	0	0	0	14	7	9	21	47	3607	117	9	13	51	105	17	6	3	42	12	0	0	9	0	0	0	0	11	7	0	4	0	4	4	1	1	25	0	1	20	33	1	0	10	0	0	79	1	22	23	0	683	2	4	72	3	24	6	13	2	0	126	954	27	121	441	2908	122	716	4	5	3	8	6621	5	2	1	3	409	122	53	116	4	2	59	244	37	109	76	20	41	86	0	15	57	238	439	1577	5	20	2	3	1357	10	0	2	3	1	8	1	31	5	7	1	2	10	10	29	90	4	0
......................................................ATAAT----ACGTTTCGAACTAAT..........................................................................................................................	20	2	11806.00	23612	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	3	1	1	16	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	8	9	11	0	0	0	0	0	0	2	1	0	0	1	0	0	6	0	1	6	0	0	0	0	2	1	0	0	0	0	0	2	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	16	13	0	0	0	0	0	0	0	0	3	3	0	0	2	1	1	2	7	0	0	3	3	0	0	0	0	0	14	0	3	0	0	0	2	1	0	4	0	0	2	11	0	3	0	3	0	5	0	0	0	0	0	0	6	66	5	30	0	0	0	0	60	0	19	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	1	116	13	3	9	33	83	6	15	4	29	68	0	0	35	0	0	0	0	0	0	0	0	1	8	9	6	1	9	0	0	17	32	2	0	12	4	2	51	0	24	13	1	629	1	3	36	0	8	6	3	0	0	25	124	13	62	70	409	11	65	6	4	5	3	11510	9	10	12	6	50	34	16	2	1	1	4	17	1	5	36	17	19	32	0	6	1	14	24	6174	0	17	3	2	2701	5	0	0	8	0	3	7	34	0	5	1	3	12	20	62	227	12	0
..........................................................................................................................ATTAGGTAGTTACGCATTATC.........................................................	21	2	3949.00	7898	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	664	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	1	1	0	0	1	0	1	5	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	11	0	0	6	0	0	0	4	0	0	0	3	0	0	0	0	0	1	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	0	0	0	0	0	0	0	0	0	3	4	2	0	0	0	0	1	3	3	10	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	2	0	1	82	0	366	1	0	0	0	60	0	325	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	5	3	438	17	1	3	4	8	0	5	0	3	1	3	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	19	0	0	9	17	0	0	4	1	2	6	0	5	1	0	159	1	0	8	0	1	1	2	0	0	13	103	7	18	52	305	16	75	0	1	3	3	1781	1	0	0	1	180	76	32	20	0	1	8	29	12	32	49	11	43	61	3	2	20	47	103	1019	3	13	3	4	1194	9	1	1	6	0	11	3	65	2	2	1	2	8	6	29	54	3	0
..........................................................................................................................ATTAGGTAGTTACGCATTAT..........................................................	20	2	1670.00	3340	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	386	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	3	0	0	103	1	338	0	0	0	0	84	0	283	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	6	108	7	0	1	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	5	4	0	0	0	0	0	3	0	3	0	0	50	0	0	4	0	2	0	2	1	0	8	51	2	15	19	96	7	19	2	0	0	1	654	0	1	0	1	43	12	16	3	1	0	0	6	0	1	28	2	29	31	0	4	4	8	22	462	2	1	0	1	284	4	2	0	1	0	3	1	20	0	0	0	0	3	1	6	28	0	0
......................................................ATAAT----ACGTTTCGAACTAATGAA.......................................................................................................................	23	2	1168.50	2337	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	3	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	6	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	3	0	0	0	0	0	0	0	0	1	0	0	6	0	0	3	0	0	2	0	0	0	0	0	0	0	0	0	0	5	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	5	0	3	0	5	0	1	0	0	0	0	4	3	0	0	0	0	0	0	0	0	0	0	0	4	2	0	5	0	0	0	24	0	6	0	0	0	3	0	0	0	0	0	0	0	45	0	83	0	0	0	0	31	0	60	0	0	0	0	0	0	2	4	0	0	0	1	0	0	0	0	0	1	1	93	2	10	27	23	43	29	26	46	127	4	0	0	5	80	33	0	0	0	0	0	0	0	1	0	2	0	75	0	0	39	1	0	0	1	0	0	1	0	1	0	0	13	0	0	0	0	1	1	0	0	0	19	60	0	6	40	273	10	37	0	0	0	1	188	0	0	0	0	164	28	10	7	0	0	13	17	5	8	14	1	8	28	0	0	1	22	46	177	0	0	0	0	38	2	1	0	4	0	7	0	47	0	1	2	2	0	0	2	12	0	0
......................................................ATAAT----ACGTTTCGAACTAATGATC......................................................................................................................	24	2	904.50	1809	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1285	524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................ATTAGGTAGTTACGCATT............................................................	18	2	28.50	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	4	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................ATAAT----ACGTTTCGAACTAATGAAC......................................................................................................................	24	2	28.50	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AATAAT----ACGTTTCGAACTAATG.........................................................................................................................	22	2	25.50	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	1	5	0	0	0	6	0	0	0	0	0	0	15	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................ATTAGGTAGTTACGCATTATCA........................................................	22	2	23.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTAGGTAGTTACGCATTAT..........................................................	19	2	23.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	6	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................AATAAT----ACGTTTCGAACTAAT..........................................................................................................................	21	2	21.50	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	24	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AATAAT----ACGTTTCGAACTAATGA........................................................................................................................	23	2	20.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	16	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................TAAT----ACGTTTCGAACTAATGAA.......................................................................................................................	22	2	19.50	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	1	0	1	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................................................ATAAT----ACGTTTCGAACTAATGAC.......................................................................................................................	23	2	19.50	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	1	0	0	0	0	8	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	4	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTAGGTAGTTACGCATTATCTA.......................................................	22	2	16.00	32	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCTTAAATCCACCG---GAATTGTGTG---ATAT---TATGTTACAGTGATTTAATAAT----TCGATTCGAAGTTATGTGCTTTAA-TCATTC----------------------------ATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGCGTGT-----GAGAAATTGCTCATGATAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................AATGCGAAACGGATTATTAAG......................................................	21	1	3196.00	3196	22	0	13	2	2852	307	0
.............................................................................................................................AATGCGAAACGGATTATTAAGT.....................................................	22	1	2871.00	2871	28	4	8	13	2547	271	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTT....................................................	23	1	139.00	139	0	0	0	0	128	11	0
.............................................................................................................................AATGCGAAACGGATTATTAA.......................................................	20	2	127.50	255	3	0	2	0	223	27	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTA....................................................	23	1	60.00	60	0	0	1	0	53	6	0
...........................................................................................................................TAAATGCGAAACGGATTATTAA.......................................................	22	1	48.00	48	0	0	0	0	40	8	0
.............................................................................................................................AATGCGAAACGGATTATTAAGA.....................................................	22	1	44.00	44	0	0	0	0	34	10	0
............................................................................................................................AAATGCGAAACGGATTATTAAG......................................................	22	1	41.00	41	1	0	0	1	34	5	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAG......................................................	23	1	37.00	37	0	0	1	0	31	5	0
...................................................TTAATAAT----TCGATTCGAAGTTA...........................................................................................................................	22	1	32.00	32	3	1	0	0	26	2	0
..............................................................................................................................ATGCGAAACGGATTATTAAGT.....................................................	21	1	21.00	21	2	0	0	0	19	0	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAA......................................................	23	2	13.00	26	0	0	0	0	20	6	0
..............................................................................................................................ATGCGAAACGGATTATTAAG......................................................	20	1	12.00	12	2	0	0	0	8	2	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTTA...................................................	24	1	7.00	7	0	0	0	0	6	1	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTTT...................................................	24	1	5.00	5	0	0	1	0	2	2	0
...........................................................................................................................TAAATGCGAAACGGATTATTA........................................................	21	1	4.00	4	0	0	0	0	4	0	0
.............................................................................................................................AATGCGAAACGGATTATTA........................................................	19	2	4.00	8	1	0	0	0	6	1	0
.............................................................................................................................AATGCGAAACGGATTATT.........................................................	18	2	3.50	7	1	0	0	0	0	6	0
.............................................................................................................................AATGCGAAACGGATTATTAAGC.....................................................	22	2	3.00	6	0	0	0	0	5	1	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTC....................................................	23	1	3.00	3	0	0	0	0	2	1	0
...........................................................................................................................TAAATGCGAAACGGATTATT.........................................................	20	1	3.00	3	1	0	0	0	1	1	0
............................................................................................................................AAATGCGAAACGGATTATTAA.......................................................	21	2	2.50	5	0	0	0	0	4	1	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAA..................................................	25	1	2.00	2	0	0	0	0	2	0	0
................................................................................................................................GCGAAACGGATTATTAAG......................................................	18	1	2.00	2	0	0	0	0	2	0	0
............................................................................................................................AAATGCGAAACGGATTATTAAGT.....................................................	23	1	2.00	2	0	0	0	0	1	1	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAGT.....................................................	24	1	2.00	2	0	0	0	0	2	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTG....................................................	23	1	2.00	2	0	0	0	0	1	1	0
...............................................................................................................................TGCGAAACGGATTATTAAG......................................................	19	1	2.00	2	0	0	0	0	2	0	0
...............................................................................................................................TGCGAAACGGATTATTAAGT.....................................................	20	1	2.00	2	0	0	0	0	2	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAT......................................................	21	2	1.50	3	0	0	0	0	1	2	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAAA.....................................................	24	2	1.50	3	0	0	0	0	2	1	0
.............................................................................................................................AATGCGAAACGGATTATTAAGAA....................................................	23	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................AATGCGAAACGGATTATTT........................................................	19	2	1.00	2	0	0	0	0	0	2	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAT......................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAAA.................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................................................TTAATAAT----TCGATTCGAAGTTAT..........................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................TTAATAAT----TCGATTCGAAGTTAA..........................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTAC...................................................	24	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAAAA....................................................	25	2	1.00	2	0	0	0	0	2	0	0
...................................................TTAATAAT----TCGATTCGAAGTTATGTGCTT....................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.....................................................AATAAT----TCGATTCGAAGTT............................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTTAT..................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................TAAATGCGAAACGGATTATTAAGA.....................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAGTAT...................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................AATGCGAAACGGATTATTAT.......................................................	20	2	0.50	1	0	0	0	0	0	1	0
.............................................................................................................................AATGCGAAACGGATTATTAGT......................................................	21	2	0.50	1	0	0	0	0	1	0	0
.............................................................................................................................AATGCGAAACGGATTATTAAC......................................................	21	2	0.50	1	0	0	0	0	0	1	0
............................................................................................................................AAATGCGAAACGGATTATT.........................................................	19	2	0.50	1	0	0	0	0	1	0	0
............................................................................................................................AAATGCGAAACGGATTATTA........................................................	20	2	0.50	1	0	0	1	0	0	0	0

droBia1

TTTCAAACGCA---------------------------------------------------------------------TTTCCAA-TCATTA----------------------------GAAAGTTCGTTACGTACTATTTGCTCGGTTTAAA--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGTTTTAGTGACTGGTTCA---G----TATCAAC---TATGTTTC--TAATTCAGTTGT----ACTTTTC----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATACCTATAACAAATATTA----TTTACCCATCA---T-TGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTAGTTTGGGAGCTTTGGTTATAACATCAATGTAACAATTGACTACAAATTAACAAA-------------TCAATTTATATGTGGATATTCACAGCCACTATTTGTCATAT	Size	Hit Count	Total Norm	Total
No Reads

dse_50

scaffold_4:2462240-2462298 +

Known Ortholog

Testes-restricted

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.7	-33.7	-33.4