dse_454

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTGATTTTAATTAGAAAATTTATATAACTTACCGGTTTGGTTATCGCACATACCTTAAACCATAAAGGAAATAAATATTTCTAAACCATTTAAAATCAATAAATTCAATCCCATTAGTTATGAGACTAGGTATATTACTTCTATAAATGACTTATTAGCTCTAAATAAATTAAATTATATGTGTTTTCTTGATCTTTACAGAATACACCATGCAAGCATCCAGTGGTAATGTTGGCTGGCGTCAATGCGAA ************************************************..((((........))))................................................((((.((((.((.(((((..............((((....)).))..............))))).)).)))).))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo
.................................................................................................................................................................................................................ATGCAAGCATCCAGTGGTAATGT...................	23	0	1	1.00	1	1
...................................................................................................................................................................................................................GCAAGCATCCAGTGGTAATGTTG.................	23	0	1	1.00	1	1
.....................................................................................................................................................................................................................AAGCATCCAGTGGTAATGTTGGCTGGC...........	27	0	1	1.00	1	1
.......................ATAACTTACATGTTTGGT..................................................................................................................................................................................................................	18	2	18	0.06	1	1

AACTAAAATTAATCTTTTAAATATATTGAATGGCCAAACCAATAGCGTGTATGGAATTTGGTATTTCCTTTATTTATAAAGATTTGGTAAATTTTAGTTATTTAAGTTAGGGTAATCAATACTCTGATCCATATAATGAAGATATTTACTGAATAATCGAGATTTATTTAATTTAATATACACAAAAGAACTAGAAATGTCTTATGTGGTACGTTCGTAGGTCACCATTACAACCGACCGCAGTTACGCTT ************************************************..((((........))))................................................((((.((((.((.(((((..............((((....)).))..............))))).)).)))).))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body
...............................................................................................................................................................................................................................ACGATCACAACCGACCGCAGGT......	22	3	1	1.00	1	1
.................................................................................................................................................................................................................TCCGTTCGTAGGTAACCAA.......................	19	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_0:6868560-6868810 -	dse_454	TTGATTTTAATTA--GAAAATTTATATAACTT--A---------------------------------------------------------------------------------------------------------------------------------------------C----------------CGGT-TTGGTTATCGCACATACCTTAA-ACCAT------AA-----AGGAAATAAATATT------TCTAAACCATTTAAAATCAATAAA---------------------T------------------------------TCAA----------TC--------------------------------------CCATTAGT----------------T------------------------------------ATGAGACTAGGTATATTACTTCTATAAAT-------------------------------------G---ACTTAT-T-AGCTCTA------------------------------AA-----------------------------------------------------------------TAAATTAAATTATATGTG-TT-----------------------TTCTTGA---------------------------------TCTTTACAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCTGGCGTC-AATGCGAA
droSim2	3l:14396619-14396880 -	dsi_14657	TTGATTTCAATTA--GAAAATTTATATAATATATA-----------------TT-ATATATATATATT-----------------------------------------------------------------------------------------------------------------------------TTTTTTTGGTTATCGTGCATACCTTAA-ACAAT------AA-----AGGAAATAAATATT------TCTAAACCATTTAAAATCAA----------------------------------------------------------------------TC--------------------------------------CCATTAGT----------------T------------------------------------ATGGGACTAGCCATATTACTTCTATAAAT-------------------------------------GAAAACTTAT-T-AGCTCTA------------------------------AA-----------------------------------------------------------------TAAATTAAATTATATGTG-TT-----------------------TTCTTGA---------------------------------TCTTTACAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCTGGCGTC-AATGCGAA
dm3	chr3L:14747601-14747867 -		TAGATTTCAATTA--GAAAATTTCTATAACTT--A--------------------------------------------------------------------------------------------------------------------------------------CTAGAAAC----------------CGGTTTTGGTTATCGTACATACCTTAA-ACAAT------AG-----AG-----AAATATT------TATATATCATTTAAAATCAATT----------------TATCTTGCCCTAT----------TCTTAATAACTCCTTTTAA----------TC--------------------------------------TCATTAGT----------------T---------------------------------------------------TTACTTATATAAAT-------------------------------------ACAAACTTAT-C-AGCTCTA------------------------------AA-----------------------------------------------------------------TAAATTAGATTATATATG-TC-----------------------TTCTCGA---------------------------------TATTTACAGAATACACCATGCAAGCATCCAGTGGTTATGTTG-GCTGGCGTC-AATGCGAA
droEre2	scaffold_4784:14714018-14714294 -		TAGTTTTCATTTA--GCACATATATATAAATTTTA--------------------------------------------------------------------------------------------------------------------------------------CTAGAAAC----------------CGGTTTTGGCTATCGGACATAATTTTATGCGAA------AGAGAA-------AAAATAGTTAC---TATATACCAACTGAAATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGCCTCCAG-CACTCTAGGTATACTAAATAATACTAATATCGTTTTTTAGTTACCTGATAATATATCAACAAGTCACACCCT-------------TCTTACTTATC----------------------T--GATT-----------------------TTCCTGA---------------------------------TTTTTACAGAACACACCATGCAAGCATCCAGTGGTGATGTTG-GCTGGCGTC-AATGCGAA
droYak3	3L:14834692-14835032 -		TAGTTTTCATTTA--GCAGATTTATAGA--------------------------------------------------------------------------------------------------------------------------------------------------AAC----------------TGGTTTTGGTTATCGAACTTAATTTTA-TTTATAGAAATGG-----AGAATAAAAATAGT------TCTATATCATCTAAAATCTATTTA---------------------CACTAT----------TGTACATAACTCTTTATTA----------TC--------------------------------------CCTTTAGT----------------T------------------------------------GTGTGACTATGTGTAATTCCCATATAAAA-------------------------------------GAAAGCCTCTAG-TGCTCTAGGAATATTAAC-------GATATCGTTTTATAGTTAATTGATAATATATCAACATTTCACACCAT------------TTTTTACTTATC----------------------T---------GTTATATAAATTT-------GTCCTAA---------------------------------TTTTTACAGAATACACCATGCAAGCATCCAGTAGTAATGTTG-GCTGGCGTC-AATGCGAA
droEug1	scf7180000409456:996919-997242 -		AAAGTTATAAACA--AAAGAAAT---------------ACTGTTTAAAAAAAACACTACTT--TTGATTACTTTGCCTAGGATATACTATTATGATTATTATATTATAATAATGATTATTTTTATGCT---AGAA-------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------AGATA---CCT-------------CA----ATAAATCCAATTATCTTATTTTCGTATATCTCAGATTCATTTTAACGATTCACATATTTTGCATAATAATGAGAA-----------------------------------------------------------------------------------------------------------C----------ATCT------------------------------TA---------------------------------GAAAGTTGTTTA-------TTATCTGTATTACAAAAATTCATTAATTT----------------AATTTAATTTT-TTCTTT----------------------------------ATATTTTAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCCGGCGTA-AATGCGAA
droBia1	scf7180000302428:5135998-5136065 +		TATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC--TT---------------------------------CCTCTTCAGAATACACCATGCAAGCACCCAGTGGTTATGTTG-GCCGGCGTG-AATGCGAA
droTak1	scf7180000415135:458909-459148 -		TATAACTTTATA------CTTACAGAAAACCTTTC--------TTATAAACAATA-----T--CTGAT-----------------------------------------------------------------TACT--TTA--CGTCATT------------------------------------------------------------------ATC---CATAAAAAC---GCAAAGTATACAAGCATT------TTCA-----ACTGGAATATA-----------ATA--T-------GCATAGAGATA---CTT-------------TAA------------------------------------------------------------------TAATAACTTAAC-----------------------------------------------------------------------------------------------------------C----------ATTT------------------------------TT---------------------------------AAAAGATTTTTA---------------------------TACTACCACCC-AT-----------------------TTCTTCATTT------------------------------ATTTTTTAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCTGGCGTA-AATGCGAA
droEle1	scf7180000491199:1918791-1918929 -		TTAATTTTAAGTCCAGAAA-------GCAAT-------AAT-----------------------------------------------------------------------------------TTTTTTTAAGTTGATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA------------------------------AG-----------------------------------------------------------------CAAA-------------------CCTAAAATATGTATA----TTTTGTTCC----------------------------------TTTTCCAGAATACACCATGCAAGCATCCAGTAGTAATGTTG-GCCGGCGTG-AATGCCAA
droRho1	scf7180000777233:58988-59272 +		AAGTTGTTTATTT--GTAAAGAT--ATAATTT--TCCA-----GCTAGTACAATA-----A--TTTG------------------------------------------------------------T---AAAGT------GTC----------------------------------------------------ACCA--------------TTTAA-TCCATGGAAAT---GTG-------ATTATAGTTCCAATTTCA-----GAGAA---C-ATT----------------TGACTTGTTCAAATGTTTTTCTCTGAATATAACTCTCT------------------------------------------------------------------------------------------------------------------------------------------AGAAAC-------------------------------------CCAACCTTAT-TAAGTTCTT-------AAA--------------------AA-----------------------------------------------------------------TAATTT-----AAGTTTG-TT-----------------------CCCACCTTTTTAATGCTTGATATAATTTGTTCGCG-----CGTTTTCAGAATACACCATGTAAGCATCCAGTGGTGATGTTG-GCCGGCGTG-AATGCCAA
droFic1	scf7180000453807:203450-203759 -		TACGATACAAAGG--GACAATTTGTATTGGTT--A-----------------------------------------------------------------------------------------------------------------AATACATTTTTTTAAGTGTTCGTTAAAAACAGTGTTTTCAAAGACAGGT-TTGATAA--------------------------------------------------------------------------------------------------AAGTAAAGTTC---CTT-------------TAA------------------------------------------------------------------ATTTAATTTAACTATGTATAATGTTTTGTAATTGTCATTTTCATAATTG-GTGAAAGTTAGATATTTTCGATTAAACAACAGACAATAAAAACTGTAATAATATTTAATATTTTG---AT-------------------------------------------------------------------------------------------TATTCCCATAAT----------------------T---------GATAGAATAAT---------TTATTAT---------------------------------TCATTTTAGAATACACCATGCAAGCATCCAGTGGTGATGTTG-GCCGGCGTG-AATGCCAA
droKik1	scf7180000302383:894982-895173 -		TTGCTTAGATTCA--AAACATAT--------------------------------------------------------------------------------------------------------G---GGAAAT--GTA--CGTTATTACATTTTTA---------TTAGTATT----------------TGG-----------------------------------------------------------------------------AATATA-----------TTTAAT-------TTTTGGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTATTCTG---ACTTTT-T-ACCATTT------------------------------AT---------------------------------TAAAT--------------------------------------ATTTATT-TT-----------------------CCCTTCATTT------------------------------TAATTACAGAACACACCATGCAAGCACCCAGTTGTGATGTTG-GCCGGCGTC-AATGCCAA
droAna3	scaffold_12929:1399025-1399149 +		GGTACACTACTCA--C---------------------------------------------------------------------------------------------------------------T---GAATC------ACT----------------------------------------------------TCTGACTA------------------------------------------------------------------------------------------------------------------------------------------ATCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------------------TATCTCTAAAATATATATA----TTTCA--TT---------------------------------TTGTTATAGAGTACACCCTGCAAGCACCCGGTTATACTGCTT-CAGGATGTC-AACTTCAA
droBip1	scf7180000396380:328960-329089 +		GACCGGGGGT--A--AT---------------------ACT-----------------------------------------------------------------------------------TACT---GAATCA--TTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-------------T----GACTAATCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------TATATT----TT-------------TTATATA--------------------------TTTTTATTAAAAACAGAGTACTCCCTGCAAGCACCCGGTTATATTACTG-CAGGATGTT-AATTTTAA
dp5	XR_group6:1001324-1001380 +		TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGAACACACCATGCAAACACCCTGTGGTAATGCTG-GCCGGCGTC-AATGCGAA
droPer2	scaffold_12:1680077-1680127 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACACCATGCAAACACCCTGTGGTAATGCTGGGCCGGCGTC-AATGCGAA
droWil2	scf2_1100000004949:1097226-1097285 +		AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACAGAACACACCATGCAAACATCCTGTAGTCATGTTG-GCCGGCGTA-AATGCTAA
droVir3	scaffold_13049:16843499-16843578 -		AAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATCTGTATA---------------------------------------CT-----TTTGTTTAGAACACGCCATGCAAACATCCAGTGGTGATGTTG-GCCGGCGTC-AATGCCAA
droMoj3	scaffold_6680:19847918-19848213 +		TAAATTATATTTT--AAATATGAAAATAAATA--A-------TTGAATATATATAATATAT--TTATATATTTAATAAAGTATATATTATT-------------------------------------------AAC--TTA--TTTTAAT------------------------------------------------------------------ATT---TAA---------------------AATATT------CATATAATA------------AATTTCAAATTTA--TTTATTGTGATTTAA----------TTT-----------------------------------------------------------ATTTATTTTCATATA-TATATCATTATGAGTA---------------------------------------------------TTTTTTTCAAATAT-------------------------------------CAAAAA------------------------T-------GAGTATGATTTAAA-----------------------------------------------------------------CAAAATTGATATCATT----------------AATTT-------ACTTTTA---------------------------------TCTTTATAGAACACGCCATGCAAGCATCCAGTGGTGATGTTG-GCTGGCGTC-AACGCCAA
droGri2	scaffold_15245:2079153-2079269 -		TAAGTGTTCT--A--ATAAATAC--------------------------------------------------------------------------------------------------------A---AACAAA--ATAACT----------------------------------------------------TCG------------------------------------------------------------------------------------------------------------------------------------------ATCTAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAT------------------------CTCTTTG---------------------------------TCGTTGTAGGAAAATCCCTCAAAACATCCCATTATTATACTG-AAAGATGTGTCCTACATA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

TTGATTTTAATTA--GAAAATTTATATAACTT--A---------------------------------------------------------------------------------------------------------------------------------------------C----------------CGGT-TTGGTTATCGCACATACCTTAA-ACCAT------AA-----AGGAAATAAATATT------TCTAAACCATTTAAAATCAATAAA---------------------T------------------------------TCAA----------TC--------------------------------------CCATTAGT----------------T------------------------------------ATGAGACTAGGTATATTACTTCTATAAAT-------------------------------------G---ACTTAT-T-AGCTCTA------------------------------AA-----------------------------------------------------------------TAAATTAAATTATATGTG-TT-----------------------TTCTTGA---------------------------------TCTTTACAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCTGGCGTC-AATGCGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGCATCCAGTGGTAATGT.....................	23	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGCATCCAGTGGTAATGTTG-..................	23	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATCCAGTGGTAATGTTG-GCTGGC............	27	1	1.00	1	0	0	1	0

droSim2

TTGATTTCAATTA--GAAAATTTATATAATATATA-----------------TT-ATATATATATATT-----------------------------------------------------------------------------------------------------------------------------TTTTTTTGGTTATCGTGCATACCTTAA-ACAAT------AA-----AGGAAATAAATATT------TCTAAACCATTTAAAATCAA----------------------------------------------------------------------TC--------------------------------------CCATTAGT----------------T------------------------------------ATGGGACTAGCCATATTACTTCTATAAAT-------------------------------------GAAAACTTAT-T-AGCTCTA------------------------------AA-----------------------------------------------------------------TAAATTAAATTATATGTG-TT-----------------------TTCTTGA---------------------------------TCTTTACAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCTGGCGTC-AATGCGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................T------TCTAAACCATTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	2	1.50	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACCATGCAAGCATCCAGTGGTA.........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................T------TCTAAACCATTTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	2	1.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCTAAACCATTTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	8	0.38	3	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................T------TCTAAACCATTTAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................T------TCTAAACCATTTAAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

TAGATTTCAATTA--GAAAATTTCTATAACTT--A--------------------------------------------------------------------------------------------------------------------------------------CTAGAAAC----------------CGGTTTTGGTTATCGTACATACCTTAA-ACAAT------AG-----AG-----AAATATT------TATATATCATTTAAAATCAATT----------------TATCTTGCCCTAT----------TCTTAATAACTCCTTTTAA----------TC--------------------------------------TCATTAGT----------------T---------------------------------------------------TTACTTATATAAAT-------------------------------------ACAAACTTAT-C-AGCTCTA------------------------------AA-----------------------------------------------------------------TAAATTAGATTATATATG-TC-----------------------TTCTCGA---------------------------------TATTTACAGAATACACCATGCAAGCATCCAGTGGTTATGTTG-GCTGGCGTC-AATGCGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATCCAGTGGTTATGTTG-GCTGGC............	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATGTTG-GCTGGC............	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGTTATGTTG-GCTGGCGTC-AAT.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCAGTGGTTATGTTG-..................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATG-TC-----------------------TTCTCGA---------------------------------TATTTA.......................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTATGTTG-GCTGGC............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCAGTGGTTATGTTG-GCTGGC............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATCCAGTGGTTATGTTG-GCTG..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAAGCATCCAGTGGTT.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCATCCAGTGGTTATGTTG-GCTG..............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGTTATGTTG-GCTGGCGTC-........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTG-GCTGGCGTC-AATG....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATGTTG-GCTGGCGTC-........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTG-GCTGGCGTC-AATGCGAA	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCATGCAAGCATCCAGTGGT..........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACACCATGCAAGCATC.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTATGTTG-GCTGGGC...........	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAGTTTTCATTTA--GCACATATATATAAATTTTA--------------------------------------------------------------------------------------------------------------------------------------CTAGAAAC----------------CGGTTTTGGCTATCGGACATAATTTTATGCGAA------AGAGAA-------AAAATAGTTAC---TATATACCAACTGAAATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGCCTCCAG-CACTCTAGGTATACTAAATAATACTAATATCGTTTTTTAGTTACCTGATAATATATCAACAAGTCACACCCT-------------TCTTACTTATC----------------------T--GATT-----------------------TTCCTGA---------------------------------TTTTTACAGAACACACCATGCAAGCATCCAGTGGTGATGTTG-GCTGGCGTC-AATGCGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGCATCCAGTGGTGATG......................	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTG-GCTGGCGTC-AATGCG..	22	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACACACCATGCAAGCATCC................................	22	1	1.00	1	0	1	0	0	0	0	0

droYak3

TAGTTTTCATTTA--GCAGATTTATAGA--------------------------------------------------------------------------------------------------------------------------------------------------AAC----------------TGGTTTTGGTTATCGAACTTAATTTTA-TTTATAGAAATGG-----AGAATAAAAATAGT------TCTATATCATCTAAAATCTATTTA---------------------CACTAT----------TGTACATAACTCTTTATTA----------TC--------------------------------------CCTTTAGT----------------T------------------------------------GTGTGACTATGTGTAATTCCCATATAAAA-------------------------------------GAAAGCCTCTAG-TGCTCTAGGAATATTAAC-------GATATCGTTTTATAGTTAATTGATAATATATCAACATTTCACACCAT------------TTTTTACTTATC----------------------T---------GTTATATAAATTT-------GTCCTAA---------------------------------TTTTTACAGAATACACCATGCAAGCATCCAGTAGTAATGTTG-GCTGGCGTC-AATGCGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTG-GCTGGCGTC-........	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCATGCAAGCATCCAGTA............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTG-GCTGGCGTC-AATGC...	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAAGTTATAAACA--AAAGAAAT---------------ACTGTTTAAAAAAAACACTACTT--TTGATTACTTTGCCTAGGATATACTATTATGATTATTATATTATAATAATGATTATTTTTATGCT---AGAA-------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------AGATA---CCT-------------CA----ATAAATCCAATTATCTTATTTTCGTATATCTCAGATTCATTTTAACGATTCACATATTTTGCATAATAATGAGAA-----------------------------------------------------------------------------------------------------------C----------ATCT------------------------------TA---------------------------------GAAAGTTGTTTA-------TTATCTGTATTACAAAAATTCATTAATTT----------------AATTTAATTTT-TTCTTT----------------------------------ATATTTTAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCCGGCGTA-AATGCGAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC--TT---------------------------------CCTCTTCAGAATACACCATGCAAGCACCCAGTGGTTATGTTG-GCCGGCGTG-AATGCGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATAACTTTATA------CTTACAGAAAACCTTTC--------TTATAAACAATA-----T--CTGAT-----------------------------------------------------------------TACT--TTA--CGTCATT------------------------------------------------------------------ATC---CATAAAAAC---GCAAAGTATACAAGCATT------TTCA-----ACTGGAATATA-----------ATA--T-------GCATAGAGATA---CTT-------------TAA------------------------------------------------------------------TAATAACTTAAC-----------------------------------------------------------------------------------------------------------C----------ATTT------------------------------TT---------------------------------AAAAGATTTTTA---------------------------TACTACCACCC-AT-----------------------TTCTTCATTT------------------------------ATTTTTTAGAATACACCATGCAAGCATCCAGTGGTAATGTTG-GCTGGCGTA-AATGCGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTAATTTTAAGTCCAGAAA-------GCAAT-------AAT-----------------------------------------------------------------------------------TTTTTTTAAGTTGATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA------------------------------AG-----------------------------------------------------------------CAAA-------------------CCTAAAATATGTATA----TTTTGTTCC----------------------------------TTTTCCAGAATACACCATGCAAGCATCCAGTAGTAATGTTG-GCCGGCGTG-AATGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGTTGTTTATTT--GTAAAGAT--ATAATTT--TCCA-----GCTAGTACAATA-----A--TTTG------------------------------------------------------------T---AAAGT------GTC----------------------------------------------------ACCA--------------TTTAA-TCCATGGAAAT---GTG-------ATTATAGTTCCAATTTCA-----GAGAA---C-ATT----------------TGACTTGTTCAAATGTTTTTCTCTGAATATAACTCTCT------------------------------------------------------------------------------------------------------------------------------------------AGAAAC-------------------------------------CCAACCTTAT-TAAGTTCTT-------AAA--------------------AA-----------------------------------------------------------------TAATTT-----AAGTTTG-TT-----------------------CCCACCTTTTTAATGCTTGATATAATTTGTTCGCG-----CGTTTTCAGAATACACCATGTAAGCATCCAGTGGTGATGTTG-GCCGGCGTG-AATGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TACGATACAAAGG--GACAATTTGTATTGGTT--A-----------------------------------------------------------------------------------------------------------------AATACATTTTTTTAAGTGTTCGTTAAAAACAGTGTTTTCAAAGACAGGT-TTGATAA--------------------------------------------------------------------------------------------------AAGTAAAGTTC---CTT-------------TAA------------------------------------------------------------------ATTTAATTTAACTATGTATAATGTTTTGTAATTGTCATTTTCATAATTG-GTGAAAGTTAGATATTTTCGATTAAACAACAGACAATAAAAACTGTAATAATATTTAATATTTTG---AT-------------------------------------------------------------------------------------------TATTCCCATAAT----------------------T---------GATAGAATAAT---------TTATTAT---------------------------------TCATTTTAGAATACACCATGCAAGCATCCAGTGGTGATGTTG-GCCGGCGTG-AATGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGCTTAGATTCA--AAACATAT--------------------------------------------------------------------------------------------------------G---GGAAAT--GTA--CGTTATTACATTTTTA---------TTAGTATT----------------TGG-----------------------------------------------------------------------------AATATA-----------TTTAAT-------TTTTGGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTATTCTG---ACTTTT-T-ACCATTT------------------------------AT---------------------------------TAAAT--------------------------------------ATTTATT-TT-----------------------CCCTTCATTT------------------------------TAATTACAGAACACACCATGCAAGCACCCAGTTGTGATGTTG-GCCGGCGTC-AATGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGTACACTACTCA--C---------------------------------------------------------------------------------------------------------------T---GAATC------ACT----------------------------------------------------TCTGACTA------------------------------------------------------------------------------------------------------------------------------------------ATCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------------------TATCTCTAAAATATATATA----TTTCA--TT---------------------------------TTGTTATAGAGTACACCCTGCAAGCACCCGGTTATACTGCTT-CAGGATGTC-AACTTCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACCCTGCAAGCACCCGGTT............................	23	1	1.00	1	0	1	0	0	0	0

droBip1

GACCGGGGGT--A--AT---------------------ACT-----------------------------------------------------------------------------------TACT---GAATCA--TTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-------------T----GACTAATCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------TATATT----TT-------------TTATATA--------------------------TTTTTATTAAAAACAGAGTACTCCCTGCAAGCACCCGGTTATATTACTG-CAGGATGTT-AATTTTAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGAACACACCATGCAAACACCCTGTGGTAATGCTG-GCCGGCGTC-AATGCGAA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACACCATGCAAACACCCTGTGGTAATGCTGGGCCGGCGTC-AATGCGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACAGAACACACCATGCAAACATCCTGTAGTCATGTTG-GCCGGCGTA-AATGCTAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGTAGTCATGTTG-G.................	18	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCATGTTG-GCCGGC............	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-GCCGGCGTA-AATGCTA.	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGTAGTCATGTTG-GCCGGC............	23	1	1.00	1	0	0	0	1	0

droVir3

AAATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATCTGTATA---------------------------------------CT-----TTTGTTTAGAACACGCCATGCAAACATCCAGTGGTGATGTTG-GCCGGCGTC-AATGCCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTGGTGATGTTG-GCC...............	20	1	4.00	4	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGTGGTGATGTTG-GCC...............	21	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAAACATCCAGTGGTGAT.......................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGTGGTGATGTTG-GCCGG.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAAACATCCAGTGGT..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCCATGCAAACATCCAG..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---------------------------------------CT-----TTTGTTTAGAACACGCCATGCA.......................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTGGTGATGTTG-GCCGGC............	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGATCTGTATA---------------------------------------CT-----TTTG.........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTGGTGATGTTG-GCCGG.............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TAAATTATATTTT--AAATATGAAAATAAATA--A-------TTGAATATATATAATATAT--TTATATATTTAATAAAGTATATATTATT-------------------------------------------AAC--TTA--TTTTAAT------------------------------------------------------------------ATT---TAA---------------------AATATT------CATATAATA------------AATTTCAAATTTA--TTTATTGTGATTTAA----------TTT-----------------------------------------------------------ATTTATTTTCATATA-TATATCATTATGAGTA---------------------------------------------------TTTTTTTCAAATAT-------------------------------------CAAAAA------------------------T-------GAGTATGATTTAAA-----------------------------------------------------------------CAAAATTGATATCATT----------------AATTT-------ACTTTTA---------------------------------TCTTTATAGAACACGCCATGCAAGCATCCAGTGGTGATGTTG-GCTGGCGTC-AACGCCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGTGGTGATGTTG-GCTG..............	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACACGCCATGCAAGC....................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCCAGTGGTGATGTTG-GCT...............	22	1	1.00	1	0	0	0	0	1	0

droGri2

TAAGTGTTCT--A--ATAAATAC--------------------------------------------------------------------------------------------------------A---AACAAA--ATAACT----------------------------------------------------TCG------------------------------------------------------------------------------------------------------------------------------------------ATCTAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAT------------------------CTCTTTG---------------------------------TCGTTGTAGGAAAATCCCTCAAAACATCCCATTATTATACTG-AAAGATGTGTCCTACATA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_454

scaffold_0:6868610-6868760 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads