ID:

dse_452

 Coordinate:

scaffold_0:6865208-6865358 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.0 -12.9 -12.7

Flybase annnotation

CDS [Dsec\GM24533-cds]; exon [dsec_GLEANR_7531:5]; intron [Dsec\GM24533-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACCGCAACAGCAAACACAACAGACGCTCTGATCGGACCGAAGTCATAGATCCACCTTGTACTATTCTATACGATTATTAATTTGGGTTTTTGCTAAACGCTTTAAATATTCTCTT
****************************************************........((((.....................((....))....((.((.((.((.......)).)).)).)).............((....))........((((...)))).)))).....*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body		 V114
embryo
 V115
head
........................................................................................................................................................CAACAGACGCTCTGATCGGACCGA........................................................................... 24 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................ATTCTATACGATTATTAATTTGGGT............................ 25 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................TCATAGATCCACCTTGTACTATT.................................................. 23 0 1 1.00 1 1 0 0 0
....................................................GAATATGACTGACTTTCAACAACAACA............................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
............................................................................................................................................................AGACGCTCTGATCGGACCGAAGT........................................................................ 23 0 1 1.00 1 0 0 1 0
................................................................................................................................................AGCAAACACAACAGACGCTCTGATCG................................................................................. 26 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................ATACGATTATTAATTTGGGT............................ 20 0 1 1.00 1 0 0 1 0
.CAACGTGCCGACGCTGCAGGGC.................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0
.......................................................................................................................................AACCGCAACCGCAACCACAACA.............................................................................................. 22 2 4 0.25 1 1 0 0 0
................................................AGGGGAATATGACTGTCT......................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0
....................................................................CAACAACAACAACAGCAGCAAC................................................................................................................................................................. 22 0 12 0.08 1 0 1 0 0
.......................................................................................................................................................ACAACACGTGCTCTGATCG................................................................................. 19 3 13 0.08 1 1 0 0 0
.........................................................................ACAACAACAACAGCAACAGCAACAGC........................................................................................................................................................ 26 1 16 0.06 1 1 0 0 0
...........................................................................................................CAACAACAGCAGCAGCAGCA............................................................................................................................ 20 0 20 0.05 1 0 0 1 0
............................................................................................................AACAACAGCAGCAGCAGCA............................................................................................................................ 19 0 20 0.05 1 0 0 1 0
.............................................................................................................ACAACAGCAGCAGCAGCAGCA......................................................................................................................... 21 0 20 0.05 1 0 0 1 0
.......................................................................................AACAGCAACAGCAGGATCAGCGACAAC......................................................................................................................................... 27 3 20 0.05 1 0 0 0 1
..............................................................................................ACAGCAGCAGCAGCAACAAC......................................................................................................................................... 20 0 20 0.05 1 0 0 1 0
........................................................................................ACAGCAACAGCAGCAGCAGCAACA........................................................................................................................................... 24 0 20 0.05 1 0 0 1 0
....................................................................................................................................................GACCCAACGGACGCTCTG..................................................................................... 18 3 20 0.05 1 1 0 0 0
........................................................................................................CAGCAACAACAGCAGCAGTAG.............................................................................................................................. 21 1 20 0.05 1 0 0 1 0

Anti-sense strand reads

GGGTCCACGTCTGCGACGTCCCGGTAGTCTAGTATCCGTTAAATTTAGTCCACTTATACTGACTGAAAGTTGTTGTTGTTGTCGTCGTTGTCGTTGTCGTCGTCGTCGTTGTTGTCGTCGTCGTCGTCGTTGTTGTTGGCGTTGTCGTTTGTGTTGTCTGCGAGACTAGCCTGGCTTCAGTATCTAGGTGGAACATGATAAGATATGCTAATAATTAAACCCAAAAACGATTTGCGAAATTTATAAGAGAA
***************************************************************************........((((.....................((....))....((.((.((.((.......)).)).)).)).............((....))........((((...)))).)))).....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
 V115
head
........GTCTGCGACGTCCCGGTCG................................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0
......................................................................TGTAGTTGTTGTCGTCGTTGTCGT............................................................................................................................................................. 24 1 8 0.13 1 0 1 0
...................................................................................................................................................................GACCAGCCGGGCTACAGTA..................................................................... 19 3 10 0.10 1 1 0 0
..........................................................................GTTGTTGTCGTCGTTGTCGT............................................................................................................................................................. 20 0 20 0.10 2 0 2 0
.....................................................................TTGTTGTTGTTGTCGTCGTTG................................................................................................................................................................. 21 0 16 0.06 1 0 1 0
......................................................................TGTTGTTGTTGTCGTCGT................................................................................................................................................................... 18 0 20 0.05 1 0 0 1
........................................................................................................GTCGTTGTTGTCGTCGTC................................................................................................................................. 18 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_0:6865158-6865408 - dse_452 CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAG---CAACAAC---A---------G---CAGCAGCA---GC---A---GCAACAACAACCGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-TCCACCTTGTACTAT----------------------------TCTATAC----GATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTT
droSim2 3l:14393183-14393445 - dsi_13813 CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAGCAA---CAACAGC---AGCAGCAGCAGCAACA---------------ACAACAACAACAACAACAACCGCAACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-TCCACCTTGTACTAT----------------------------TCTATAC----GATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTT
dm3 chr3L:14744175-14744416 - CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATAACTGACTTTCAACAACAACAACCGCAGCAGCAACAACAGCAGCA------------GC---A---------A---CAACAGCA---GC---A---ACAACAACAACAGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-TCCATCTTGTACTAT----------------------------TCTATAC----AATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTT
droEre2 scaffold_4784:14710632-14710876 - der_815 CTCAGGTGCAGACGCTGCAGGGCCATCAGATCATCGGCAATTTGAATCAGGTGAATATGACTGACTTTCAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAG---CA---GC---A---------------ACAGCA---GC---AGCA---ACAACAGCAGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-TCCACCTTGTACTAT----------------------------TCTATAC----AAATATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTT
droYak3 3L:14831313-14831563 - dya_798 CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATTGGCAATTTGAATCAGGTGAATATGACTGACTTTCAACAACAACAGCAACAGCAGCAGCAGCAGCAACAACAG---CAGCAGC---A---------A---CAGCAGCA---------GCAACAACAACAGCAGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-TCCACCTTGTACTAT----------------------------TCTATAC----AAATATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTT
droEug1 scf7180000409456:993548-993800 - CCCAGGTTCAGACGCTGCAGGGTCATCAGATCATAGGCAATATAAATCAGGTGAATATGACTGACTTCCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAG---CAGCAGC---A---------ACAACAACAGCA---GC---AGCA---GCAACAACAGCA------ACAGCAAAC---------ACAACAGACGCTTTGA---------------------------------ACGGG----ACCGAAC-----AC-ACAAT-TC-----TATATAGT----------------------------TCTATAT----AATAATTAATT-T---TTGGG-----TTTTTTGCTA-----AAC-GCTTTAAATATTCTCCT
droBia1 scf7180000302428:5139277-5139529 + CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAG---CAGCAGCAGCA------------ACA------------------ACAGCAGCAGCAGCA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-ACG-TA-CTAGA-TCCACTATGTACTAT----------------------------TCTATAT----AGCTATTAGTT-T------TG-----GT-TTTGCTA-----AAC-GCTTTAAATATCCTTCT
droTak1 scf7180000415135:455322-455566 - CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAGCAACAACAGCAGCAGCAGCAACAGCAACAACAGCAG---CAGCAGC---A---------------------------------ACAACAACAGCAGCA------ACAGCAAAC---ACAATCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----AC-GTAGA-TCCACTATGTACTAT----------------------------TCTATAT----AATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTGATTATTCTTCT
droEle1 scf7180000491199:1914632-1914891 - CCCAGGTGCAGACGCTGCAGGGTCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAACAACAACAACAGCAGCAGCAGCAGCAACAACAGCAG---CAACAGC---A---------A---CAACAACA---------ACAACAACAGCAGCAGCA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGCAA-----TC-GTAGA-TCCACCATGTACTAT----------------------------TCTATATAATT-ATTGTTAATT-T------GG-----GTTTTTGCTA-----AGC-GCTTTAAATATTCTCTC
droRho1 scf7180000777233:62545-62792 + CCCAAGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAACAACAGCAGCAGCAGCAACAACAACAGCAACAACAA---CAACAAC---A---------------------------------ACAACAGCAGCAGCA------ACAGCAAAC---ACAATCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGTAA-----TC-GTAGA-TCCACCATATACTAT----------------------------TCTGTATAATT-ATTATTAATT-T------GG-----GTTTTTGCTT-----AAC-GCTTTAAATATTTTCCT
droFic1 scf7180000453807:200024-200280 - CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATCTAAATCAGGTGAATATGACTGACTTCCAGCAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAAC---A---------GCAACAG---CA---GC---AGCAACAACAACAGCAGCA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAA-----AC-CTAGA-TCCAC-------TAT----------------------------TCAATATAATT-A--ATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTT
droKik1 scf7180000302383:891632-891843 - CCCAGGTGCAAACGCTGCAGGGTCATCAGATCATAGGCAATATCAATCAGGTGAATATGACTGATTTCCAACAGCAACAACAACAACAG---------------------------------------------------CA---GC---AGCA---------GCAACA------ACAGCAAACACAACAACCACAACAGACGCTTTGA---------------------------------TTGGA-----CGGAAAAACG-TAGTTAGA-TCCATTATGTACTAT----------------------------T-----------ATTATT--TT-T------GG-----A--TTTGCCAAACCAAAC-GCTTTAAGT--------
droAna3 scaffold_13337:4357795-4358041 + dan_2418 CCCAGGTTCAGACCCTGCAGGGCCATCAGATCATAAGCAATTTGAATCAGGTGAATATGACTGATTTCCAGCAACAACAGCAACAGCAACAACAGCAGCAACAGCAA---CAACAGC---A---------ACAACAACAGCA---GC---AACA---GCAACAACAGCA------ACAGCAAACACAACAACCACAACAGACGCTCTGA---------------------------------TCAGA-----CGGACA----AAC-GTAGC-TCCATTTTGTACTAT----------------------------TCTATTT----AATTTTTAATT-T------TT-----GCTTCTGCTA-----AAA------------------
droBip1 scf7180000395450:486899-487150 + CCCAGGTTCAGACCCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGATTTCCAGCAACAACAACAACAGCAACAGCAGCAACAACAGCAG---CAACAGC---A---------A---CAACAGCAGCAGCAACAACCACCACCACAACAACA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCAGA-----CGGACG----AAC-ATAGC-TCCATTTTTTAATAT----------------------------TCTA-----------ATTAATT-T------TT-----AATTTTGCTA-----AACTGCTAAAAA---------
dp5 XR_group6:1004526-1004730 + dps_2964 CCCAGGTGCAGACCCTGCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAACAACAGCAGCCACAG------------------------------------------------------CA---GC---AGCC---------ACCACA------ACAGCAAAC---ACAACCCCAACAGACGCTCTGA---------------------------------TCGGACAAGACCGAA------AC-GTAGAATCTATT-------AT-TATA-----------------ATCTGTTCT---------ACTCTTATAT-A------AA-----CTGCTTGCGT-----AG--------------CTCAT
droPer2 scaffold_12:1683282-1683496 + CCCAGGTGCAGACCCTGCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAACAACAGCAGCCACAG------------------------------------------------------CA---GC---AGCC---------ACCACA------ACAGCAAAC---ACAACCCCAACAGACGCTCTGA---------------------------------TCGGACAAGACCGAA------AC-GTAGAATCTATT-------AT-TATA-----------------ATCTGTTCTACTC----GTATATAAACTGCTTGCGTAG-----CTCATTTCTA-----AAC-GA---------------
droWil2 scf2_1100000004949:1101288-1101459 + CCCAAGTACAGACCTTGCAGGGCCATCAAATTATAGGCAATTTGAATCAGGTGAATATAACTGATTTCCAACAGCAACAG---------------------------------------------------------------------------------CAGCAACA------ACAGCAAACACAACCACCACAACAGACGCTTTGA---------------------------------TTGGA-----CCGAT------AT-ATAGA-TCCATTTATT--------------------------------------------AATTATTTATT-T------CGTTCCCAA--------------------------------TT
droVir3 scaffold_13049:16840023-16840281 - dvi_20239 CCCAGGTGCAAACGTTGCAGGGTCATCAGATAATTGGCAATTTGAATCAGGTGAATATGACTGATTTTCAACAGCAACAACAATCACAACAACAACAGCAGCA------------GC---A---------A---CAG---CA---GC---AGCA---GCAACAACAACA------ACAACAAACAACACAACCACCACAGACGCTTTGAGTAGCA-CGTACAGCT-------CTGACG--AATCGAA-----CCGAA------TC-ATAGA-CCCCCTTTA-----T-TATAA--ACCCAATCCCTGAC-TTGGTTCT----------------------------C-----CAATATGCTT-----AA--------------CTCTT
droMoj3 scaffold_6680:19851416-19851662 + dmo_2544 CTCAGGTGCAAACGTTGCAGGGTCATCAGATCATTGGCAACTTGAATCAGGTGAATATGACTGATTTTCAACAGCAACAACAACAGCAACAGCAGCAGCA---------------AC---A---------------------------------ACAACAGCAGCAGCA------ACAGCAACA---ACAACCACCACAGACGCTTTGAGTAGCA------AGCTCTCACTTATGACAAAAATCGAA-----CCGAA------TC-ATACA-CCCACT-------AT-TATAG--ACCCAATCCAAGAC-CTGGTTCT--CC------------------------------GATTATGCTT-----AA--------------CTCTC
droGri2 scaffold_15110:16267294-16267575 + dgr_331 CTCAGGTGCAAACGTTGCAGGGTCATCAGATCATTGGCAATATAAATCAGGTGAATATGACTGATTTTCAACAACAACAGCAACAGCCGCAGCAGCAACAACAGCAGCAGCAGCAGC---A---------GCAACAACA------AC---AACAACCACAGCAACAACA------ACAACAAAC---ACAACCACAACAGACGCTTTGAGTAGCAACA---AGCA-ACA-TTTTGACG--AATCGGA-----CGGAA------TC-GTAGAAAACATA-------AATTTTTGATACCCAATCCC--------------------------TTGACT-T------GG-----TTCACCACAA-----TAC-GCTTTA------CTCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAG---CAACAAC---A---------G---CAGCAGCA---GC---A---GCAACAACAACCGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-TCCACCTTGTACTAT----------------------------TCTATAC----GATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................CAACAGACGCTCTGA---------------------------------TCGGA-----CCGA....................................................................................................................................2411.0010100
.............................................................................................................................................................................................................................................................................................AT----------------------------TCTATAC----GATTATTAATT-T------GG-----GT..................................2511.0011000
.......................................................................................................................................................................................................................................................................TC-ATAGA-TCCACCTTGTACTAT----------------------------T........................................................................2311.0011000
....................................................GAATATGACTGACTTTCAACAACAACA.....................................................................................................................................................................................................................................................................................................................2711.0011000
......................................................................................................................................................................................................AGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----T............................................................................................................................2311.0010010
.................................................................................................................................................................................AGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCG...............................................................................................................................................2611.0010100
..............................................................................................................................................................................................................................................................................................................................ATAC----GATTATTAATT-T------GG-----GT..................................2011.0010010
....................................................................CAACAACAACAACAGCAGCAAC..........................................................................................................................................................................................................................................................................................................22120.0810100
..............................................................................................................CAACAAC---A---------G---CAGCAGCA---GC---A---..........................................................................................................................................................................................................................................20200.0510010
...............................................................................................................AACAAC---A---------G---CAGCAGCA---GC---A---..........................................................................................................................................................................................................................................19200.0510010
................................................................................................................ACAAC---A---------G---CAGCAGCA---GC---A---GCA.......................................................................................................................................................................................................................................21200.0510010
..............................................................................................ACAGCAGCAGCAG---CAACAAC---............................................................................................................................................................................................................................................................................20200.0510010
........................................................................................ACAGCAACAGCAGCAGCAG---CAACA.................................................................................................................................................................................................................................................................................24200.0510010
droSim2
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTTCAACAACAACAACAGCAGCAACAGCAGCAGCAGCAGCAA---CAACAGC---AGCAGCAGCAGCAACA---------------ACAACAACAACAACAACAACCGCAACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-TCCACCTTGTACTAT----------------------------TCTATAC----GATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................CAACAACAGCAGCAACAGCA......................................................................................................................................................................................................................................................................................................20202.7054000054000000000000
......................................................................................................................................................................................................AGACGCTCTGA---------------------------------TCGGA-----CC......................................................................................................................................1812.00200200000000000000
....................................................................................................................................................................................AAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CC......................................................................................................................................2711.00101000000000000000
..................................................................................................................................................................................................CAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----T............................................................................................................................2711.00100100000000000000
..................................................................................................................................................................................................CAACAGACGCTCTGA---------------------------------TCGGG-----........................................................................................................................................2011.00101000000000000000
................................................................................................................................................................................................................A---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-T...................................................................................................................2011.00100100000000000000
.....................................................................................................................................................................................AAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CC......................................................................................................................................2611.00110000000000000000
............................................AATCAGGTGAATATGACTGACTTTCAAC............................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.............................................................................................................................................................................................................CTGA---------------------------------TCGGA-----CCGAAG-----TC-ATA.......................................................................................................................2011.00101000000000000000
.................................................................................................................................................................................................ACAACAGACGCTCTGA---------------------------------TC................................................................................................................................................1811.00110000000000000000
.............................................................................................................................................................................................................CTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-TCCACC..............................................................................................................2811.00110000000000000000
.........................TCAGATCATAGGCAATTTAAATCAGGTGAA.............................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.......................................................................................................................................................................................................GACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATA.......................................................................................................................2611.00100000000000010000
............................................................................................................................................................................................................TCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAG......................................................................................................................2211.00100000000001000000
.............................................ATCAGGTGAATATGACTGACTTTCAACAA..........................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
............................................................................................................................................................................................................TCTGA---------------------------------TCGGA-----CCGAAG-----TC-ATAGA-TCCA................................................................................................................2711.00100000000001000000
..........................................................................CAACAACAGCAGCAACAGCAGCAG..................................................................................................................................................................................................................................................................................................24100.10100000000000100000
...........................................................................AACAACAGCAGCAACAGCAGCA...................................................................................................................................................................................................................................................................................................22120.08100000000000100000
........................................................................................................CAA---CAACAGC---AGCAGCAGCAGC................................................................................................................................................................................................................................................................22200.05100000000000100000
dm3
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATAACTGACTTTCAACAACAACAACCGCAGCAGCAACAACAGCAGCA------------GC---A---------A---CAACAGCA---GC---A---ACAACAACAACAGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-TCCATCTTGTACTAT----------------------------TCTATAC----AATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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......................................................................................................A------------GC---A---------A---CAACAGCA---GC---A---ACAACAA...................................................................................................................................................................................................................................2380.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ACAGCAGCA------------GC---A---------A---CAACAGCA---GC---..............................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GCAGCAGCAACAACAGCAG...............................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................................................................................AACAACAGCAGCA------------GC---A---------A---CAACAGCA---G..................................................................................................................................................................................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................CAGCAGCA------------GC---A---------A---CAACAGCA---GC---..............................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................A---CAACAGCA---GC---A---ACAACAA...................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................A---ACAACAACAACAGCA------ACAGCA...............................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
CTCAGGTGCAGACGCTGCAGGGCCATCAGATCATCGGCAATTTGAATCAGGTGAATATGACTGACTTTCAACAACAACAGCAGCAGCAACAGCAACAACAACAGCAG---CA---GC---A---------------ACAGCA---GC---AGCA---ACAACAGCAGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-TCCACCTTGTACTAT----------------------------TCTATAC----AAATATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................CAACAACAACAGCAG---CA---GC---A---------------ACAGCA---GC---AGC...........................................................................................................................................................................................................................................3132.0060000006
.............................................................................................AACAACAACAGCAG---CA---GC---A---------------ACAGCA---GC---..............................................................................................................................................................................................................................................2771.1480000008
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----T............................................................................................................................2611.0010000010
.TCAGGTGCAGACGCTGCAGG...............................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA-----CCG.....................................................................................................................................2211.0010000100
.................................................................TTTCAACAACAACAGCAGCAGCG............................................................................................................................................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA-----C.......................................................................................................................................2011.0010000100
......................................................................................................................................................................................AC---------ACAACAGACGCTCTGA---------------------------------TCGG..............................................................................................................................................2211.0010001000
.............................................................................................................................................................................................................................................................................................................................................AATT-T------GG-----GTTTTTGCTA-----AAC-GCTT.............2411.0010000100
......TGCAGACGCTGCAGGGCCATCAGATC....................................................................................................................................................................................................................................................................................................................................................................2611.0010000001
......................................................................................................................................................................................AC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----........................................................................................................................................2311.0010000100
.........................................................................................................................................................................................................CGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TT........................................................................................................................2311.0010000100
.............................................................................................AACAACAACAGCAG---CA---GC---A---------------ACAGC.......................................................................................................................................................................................................................................................24110.0910100000
.....................................................................AACAACAACAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................24110.0910100000
.................................................................................................................................................GC---AGCA---ACAACAGCAGCA------ACAGC................................................................................................................................................................................................................23160.0610000100
............................................................................................CAACAACAACAGCAG---CA---GC---A---------------............................................................................................................................................................................................................................................................20200.0510100000
...........................................................................................GCAACAACAACAGCAG---CA---GC---............................................................................................................................................................................................................................................................................20200.0511000000
........................................................................................................................A---------------ACAGCA---GC---AGCA---ACAACAGCAGC............................................................................................................................................................................................................................24200.0511000000
...................................................................................................AACAGCAG---CA---GC---A---------------ACAGCA---GC---A.............................................................................................................................................................................................................................................22200.0510001000
.....................................................................AACAACAACAGCAGCAGCAAC..........................................................................................................................................................................................................................................................................................................21200.0510100000
...................................................................................................................GC---A---------------ACAGCA---GC---AGCA---ACAAC..................................................................................................................................................................................................................................20200.0511000000
........................................................................................................................................................CA---ACAACAGCAGCA------ACAGCA...............................................................................................................................................................................................................20200.0511000000
.................................................................................................ACAACAGCAG---CA---GC---A---------------ACAGCA---G..................................................................................................................................................................................................................................................22200.0511000000
.............................................................................................AACAACAACAGCAG---CA---GC---A---------------AC..........................................................................................................................................................................................................................................................21200.0510100000
droYak3
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATTGGCAATTTGAATCAGGTGAATATGACTGACTTTCAACAACAACAGCAACAGCAGCAGCAGCAGCAACAACAG---CAGCAGC---A---------A---CAGCAGCA---------GCAACAACAACAGCAGCA------ACAGCAAAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-TCCACCTTGTACTAT----------------------------TCTATAC----AAATATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................AACAACAACAGCAGCA------ACAGCAAAC---------A..................................................................................................................................................................................................2611.00101000000000
.......................CATCAGATCATTGGCAATTT.........................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................ATATTAATT-T------GG-----GTTTTTGCT...........................2111.00100000010000
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----T............................................................................................................................2611.00100000010000
..................................................................................................................................................................................GCAAAC---------ACAACAGACGCTCTGA---------------------------------TC................................................................................................................................................2411.00110000000000
.....................................................................................................................................................................................AAC---------ACAACAGACGCTCTGA---------------------------------TCGGA-----C.......................................................................................................................................2511.00100001000000
.............................................................................................................................................................................................................CTGA---------------------------------TCGGA-----CCGAAG-----TC-TTAGA-T...................................................................................................................2311.00100000010000
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA-----CCGA....................................................................................................................................2311.00100010000000
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA-----CCGAA...................................................................................................................................2411.00100000010000
.......................CATCAGATCATTGGCAATTTGAATCAGGC................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
........................................................................AACAACAGCAACAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................2740.25100100000000
.......................................................................................................................................AGCAGCA---------GCAACAACAACAGCAGCA------AC...................................................................................................................................................................................................................2790.11100000000001
...........................................................................................GCAGCAGCAACAACAG---CAGCA.................................................................................................................................................................................................................................................................................21200.10202000000000
........................................................................................................................................................CAACAACAACAGCAGCA------ACAGC................................................................................................................................................................................................................22180.06100100000000
..............................................................................................GCAGCAACAACAG---CAGCAGC---A---------A---CAGCAGC.......................................................................................................................................................................................................................................................29180.06100100000000
..................................................................................ACAGCAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................18200.05100010000000
..................................................................................ACAGCAGCAGCAGCAGCAACAACAG---C.....................................................................................................................................................................................................................................................................................26200.05100100000000
...............................................................................GCAACAGCAGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................21200.05100001000000
......................................................................................CAGCAGCAGCAGCAACAACAG---CAGC..................................................................................................................................................................................................................................................................................25200.05100000000001
................................................................................................................GCAGC---A---------A---CAGCAGCA---------GCA..........................................................................................................................................................................................................................................18200.05100100000000
....................................................................................................................C---A---------A---CAGCAGCA---------GCAACAACAACAGCA..............................................................................................................................................................................................................................26200.05101000000000
.............................................................................................AGCAGCAACAACAG---CAGCAGC---A---------A---CAGC..........................................................................................................................................................................................................................................................27200.05100100000000
..............................................................................................GCAGCAACAACAG---CAGCAGC---A---------A---CAGC..........................................................................................................................................................................................................................................................26200.05101000000000
..............................................................................................GCAGCAACAACAG---CAGCAGC---A---------A---C.............................................................................................................................................................................................................................................................23200.05101000000000
........................................................................................GCAGCAGCAGCAACAACAG---CAG...................................................................................................................................................................................................................................................................................22200.05101000000000
droEug1
CCCAGGTTCAGACGCTGCAGGGTCATCAGATCATAGGCAATATAAATCAGGTGAATATGACTGACTTCCAGCAACAACAACAGCAGCAGCAGCAACAACAACAACAG---CAGCAGC---A---------ACAACAACAGCA---GC---AGCA---GCAACAACAGCA------ACAGCAAAC---------ACAACAGACGCTTTGA---------------------------------ACGGG----ACCGAAC-----AC-ACAAT-TC-----TATATAGT----------------------------TCTATAT----AATAATTAATT-T---TTGGG-----TTTTTTGCTA-----AAC-GCTTTAAATATTCTCCTSizeHit CountTotal NormTotal
No Reads
droBia1
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAG---CAGCAGCAGCA------------ACA------------------ACAGCAGCAGCAGCA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-ACG-TA-CTAGA-TCCACTATGTACTAT----------------------------TCTATAT----AGCTATTAGTT-T------TG-----GT-TTTGCTA-----AAC-GCTTTAAATATCCTTCTSizeHit CountTotal NormTotal
No Reads
droTak1
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAGCAACAACAGCAGCAGCAGCAACAGCAACAACAGCAG---CAGCAGC---A---------------------------------ACAACAACAGCAGCA------ACAGCAAAC---ACAATCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAG-----AC-GTAGA-TCCACTATGTACTAT----------------------------TCTATAT----AATTATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTGATTATTCTTCTSizeHit CountTotal NormTotal
No Reads
droEle1
CCCAGGTGCAGACGCTGCAGGGTCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAACAACAACAACAGCAGCAGCAGCAGCAACAACAGCAG---CAACAGC---A---------A---CAACAACA---------ACAACAACAGCAGCAGCA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGCAA-----TC-GTAGA-TCCACCATGTACTAT----------------------------TCTATATAATT-ATTGTTAATT-T------GG-----GTTTTTGCTA-----AGC-GCTTTAAATATTCTCTCSizeHit CountTotal NormTotal
No Reads
droRho1
CCCAAGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGACTTCCAACAACAGCAGCAGCAGCAACAACAACAGCAACAACAA---CAACAAC---A---------------------------------ACAACAGCAGCAGCA------ACAGCAAAC---ACAATCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGTAA-----TC-GTAGA-TCCACCATATACTAT----------------------------TCTGTATAATT-ATTATTAATT-T------GG-----GTTTTTGCTT-----AAC-GCTTTAAATATTTTCCTSizeHit CountTotal NormTotal
No Reads
droFic1
CCCAGGTGCAGACGCTGCAGGGCCATCAGATCATAGGCAATCTAAATCAGGTGAATATGACTGACTTCCAGCAACAACAACAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAAC---A---------GCAACAG---CA---GC---AGCAACAACAACAGCAGCA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCGGA-----CCGAAA-----AC-CTAGA-TCCAC-------TAT----------------------------TCAATATAATT-A--ATTAATT-T------GG-----GTTTTTGCTA-----AAC-GCTTTAAATATTCTCTTSizeHit CountTotal NormTotal
No Reads
droKik1
CCCAGGTGCAAACGCTGCAGGGTCATCAGATCATAGGCAATATCAATCAGGTGAATATGACTGATTTCCAACAGCAACAACAACAACAG---------------------------------------------------CA---GC---AGCA---------GCAACA------ACAGCAAACACAACAACCACAACAGACGCTTTGA---------------------------------TTGGA-----CGGAAAAACG-TAGTTAGA-TCCATTATGTACTAT----------------------------T-----------ATTATT--TT-T------GG-----A--TTTGCCAAACCAAAC-GCTTTAAGT--------SizeHit CountTotal NormTotal
No Reads
droAna3
CCCAGGTTCAGACCCTGCAGGGCCATCAGATCATAAGCAATTTGAATCAGGTGAATATGACTGATTTCCAGCAACAACAGCAACAGCAACAACAGCAGCAACAGCAA---CAACAGC---A---------ACAACAACAGCA---GC---AACA---GCAACAACAGCA------ACAGCAAACACAACAACCACAACAGACGCTCTGA---------------------------------TCAGA-----CGGACA----AAC-GTAGC-TCCATTTTGTACTAT----------------------------TCTATTT----AATTTTTAATT-T------TT-----GCTTCTGCTA-----AAA------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................CA----AAC-GTAGC-TCCATTTTGTACTAT----------------------------TCTA.....................................................................2911.001100000
...................................................................................................AACAGCAA---CAACAGC---A---------ACAACAACAG........................................................................................................................................................................................................................................................2611.001010000
...............................................................ATTTCCAGCAACAACAGCAACA...............................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................CA----AAC-GTAGC-TCCATTTTGT..........................................................................................................2011.001010000
.......................................ATTTGAATCAGGTGAATATGACT......................................................................................................................................................................................................................................................................................................................................2311.001010000
......................................................ATATGACTGATTTCCAGCAACAAC......................................................................................................................................................................................................................................................................................................................2411.001010000
................................................................................................................................................................................................................A---------------------------------TCAGA-----CGGACA----AAC-GTAGC-TC..................................................................................................................2211.001010000
.....GTTCAGACCCTGCAGGGCCATC.........................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................................CAACAACAGCA------ACAGCAAACAC..........................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................CAGACGCTCTGA---------------------------------TCAGA-----CGGACA----..............................................................................................................................2311.001000010
..............................................................................................................................................................................................ACCACAACAGACGCTCTGA---------------------------------TCAGA-----CGGAC...................................................................................................................................2911.001010000
....................GGCCATCAGATCATAAGCA.............................................................................................................................................................................................................................................................................................................................................................1911.001000001
....................................................................................................................................................................................................ACAGACGCTCTGA---------------------------------TCAGA-----CGGAC...................................................................................................................................2311.001000001
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCAGA-----CG......................................................................................................................................2111.001001000
.....................................................................................................................................................................................................CAGACGCTCTGA---------------------------------TCAGA-----CGGACA----AAC-G.........................................................................................................................2711.001000010
.....................................................................................................................................................................................AACACAACAACCACAACAGACGCTC......................................................................................................................................................................................2511.001100000
........................................................................................................................................................................A------ACAGCAAACACAACAACCAC.................................................................................................................................................................................................2111.001010000
..................................................................................................................................................................................GCAAACACAACAACCACAACAGACGCT.......................................................................................................................................................................................2711.001010000
...........................................................................AACAGCAACAGCAACAACAGCAGCAAC..............................................................................................................................................................................................................................................................................................2720.501010000
.........................................................................................................AA---CAACAGC---A---------ACAACAACAGCA---GC---AAC...........................................................................................................................................................................................................................................2740.251100000
.......................................................................................AACAACAGCAGCAACAGCAA---CAACAGC---............................................................................................................................................................................................................................................................................2760.171010000
..........................................................................................................................................AGCA---GC---AACA---GCAACAACAGCA------ACAG.................................................................................................................................................................................................................2660.171010000
.........................................................................................................AA---CAACAGC---A---------ACAACAACAGCA---GC---..............................................................................................................................................................................................................................................2460.171010000
....................................................................................................................................AACAACAGCA---GC---AACA---GCAACAACAGC............................................................................................................................................................................................................................2760.171010000
.............................................................................................................................................A---GC---AACA---GCAACAACAGCA------ACAGCA...............................................................................................................................................................................................................2570.141010000
...................................................................................................................................CAACAACAGCA---GC---AACA---GCAACAACA..............................................................................................................................................................................................................................2690.111100000
......................................................................................CAACAACAGCAGCAACAGCAA---CAACA.................................................................................................................................................................................................................................................................................2690.111100000
........................................................................................................CAA---CAACAGC---A---------ACAACAACAGC.......................................................................................................................................................................................................................................................22130.081010000
...........................................................................AACAGCAACAGCAACAACAGC....................................................................................................................................................................................................................................................................................................21170.061010000
....................................................................................................................C---A---------ACAACAACAGCA---GC---AACA---GC.....................................................................................................................................................................................................................................22170.061010000
.......................................................................................................................................AACAGCA---GC---AACA---GCAACAACA..............................................................................................................................................................................................................................22180.061010000
..........................................................................................AACAGCAGCAACAGCAA---CAACA.................................................................................................................................................................................................................................................................................22180.061010000
..................................................................................................................................ACAACAACAGCA---GC---AACA---GCA....................................................................................................................................................................................................................................21180.061010000
.............................................................................................AGCAGCAACAGCAA---CAACAGC---............................................................................................................................................................................................................................................................................21200.051010000
.......................................................................................................................................AACAGCA---GC---AACA---GCAACAA................................................................................................................................................................................................................................20200.051010000
.....................................................................................GCAACAACAGCAGCAACAGC...........................................................................................................................................................................................................................................................................................20200.051100000
......................................................................................CAACAACAGCAGCAACAGCA..........................................................................................................................................................................................................................................................................................20200.051010000
......................................................................................................................................CAACAGCA---GC---AACA---GCAACAAC...............................................................................................................................................................................................................................22200.051010000
...................................................................................CAGCAACAACAGCAGCAAC..............................................................................................................................................................................................................................................................................................19200.051010000
.........................................................................................CAACAGCAGCAACAGCAA---CAAC..................................................................................................................................................................................................................................................................................22200.051010000
..........................................................................................................................................AGCA---GC---AACA---GCAACAACAGC............................................................................................................................................................................................................................21200.051010000
....................................................................................................................C---A---------ACAACAACAGCA---GC---AAC...........................................................................................................................................................................................................................................19200.051000001
..........................................................................................AACAGCAGCAACAGCAA---CAA...................................................................................................................................................................................................................................................................................20200.051010000
droBip1
CCCAGGTTCAGACCCTGCAGGGCCATCAGATCATAGGCAATTTAAATCAGGTGAATATGACTGATTTCCAGCAACAACAACAACAGCAACAGCAGCAACAACAGCAG---CAACAGC---A---------A---CAACAGCAGCAGCAACAACCACCACCACAACAACA------ACAGCAAAC---ACAACCACAACAGACGCTCTGA---------------------------------TCAGA-----CGGACG----AAC-ATAGC-TCCATTTTTTAATAT----------------------------TCTA-----------ATTAATT-T------TT-----AATTTTGCTA-----AACTGCTAAAAA---------SizeHit CountTotal NormTotal
No Reads
dp5
CCCAGGTGCAGACCCTGCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAACAACAGCAGCCACAG------------------------------------------------------CA---GC---AGCC---------ACCACA------ACAGCAAAC---ACAACCCCAACAGACGCTCTGA---------------------------------TCGGACAAGACCGAA------AC-GTAGAATCTATT-------AT-TATA-----------------ATCTGTTCT---------ACTCTTATAT-A------AA-----CTGCTTGCGT-----AG--------------CTCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................AAGACCGAA------AC-GTAGAATCT.................................................................................................................2011.0010100000000
................GCAGGGGCATCAGATCATAGGCAA............................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
.................CAGGGGCATCAGATCATAGGC..............................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
.......................................................................................................................................................................................................GACGCTCTGA---------------------------------TCGGACAAGACCGAA------AC-..........................................................................................................................2711.0010001000000
.........AGACCCTGCAGGGGCATCAGATCATAGGC..............................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
........................................................................................................................................................................................................ACGCTCTGA---------------------------------TCGGACAAGACC......................................................................................................................................2111.0010100000000
.....................................................................................................................................................................CACA------ACAGCAAAC---ACAACCCCAAC..............................................................................................................................................................................................2411.0010010000000
........................................CTTGAATCAGGTGAATATGACTG.....................................................................................................................................................................................................................................................................................................................................2311.0010001000000
......................................................................................................................................................................................AC---ACAACCCCAACAGACGCTCT.....................................................................................................................................................................................2211.0010010000000
...................GGGGCATCAGATCATAGGCAA............................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
........................................CTTGAATCAGGTGAATATGACTGATTTC................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGAC............................................................................................................................................2011.0010000010000
........................ATCAGATCATAGGCAACTTGAATCAGGT................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...................................................................................................................................................................................................AACAGACGCTCTGA---------------------------------TCGGA.............................................................................................................................................1911.0010000000001
droPer2
CCCAGGTGCAGACCCTGCAGGGGCATCAGATCATAGGCAACTTGAATCAGGTGAATATGACTGATTTCCAACAACAGCAGCCACAG------------------------------------------------------CA---GC---AGCC---------ACCACA------ACAGCAAAC---ACAACCCCAACAGACGCTCTGA---------------------------------TCGGACAAGACCGAA------AC-GTAGAATCTATT-------AT-TATA-----------------ATCTGTTCTACTC----GTATATAAACTGCTTGCGTAG-----CTCATTTCTA-----AAC-GA---------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................CTTGAATCAGGTGAATATGACTGA....................................................................................................................................................................................................................................................................................................................................2412.002200000
........................................CTTGAATCAGGTGAATATGACT......................................................................................................................................................................................................................................................................................................................................2212.002200000
...................GGGGCATCAGATCATAGGCA.............................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................AACCCCAACAGACGCTCTGA---------------------------------TCGGAC............................................................................................................................................2611.001100000
......................................................................ACAACAGCAGCCACAG------------------------------------------------------CA---GC---AGCC---------A................................................................................................................................................................................................................................2511.001010000
.........................................................................................................................................................................................................................................................................................................................................TATAAACTGCTTGCGTAG-----CTCA................................2211.001001000
droWil2
CCCAAGTACAGACCTTGCAGGGCCATCAAATTATAGGCAATTTGAATCAGGTGAATATAACTGATTTCCAACAGCAACAG---------------------------------------------------------------------------------CAGCAACA------ACAGCAAACACAACCACCACAACAGACGCTTTGA---------------------------------TTGGA-----CCGAT------AT-ATAGA-TCCATTTATT--------------------------------------------AATTATTTATT-T------CGTTCCCAA--------------------------------TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..CAAGTACAGACCTTGCAGGGC.............................................................................................................................................................................................................................................................................................................................................................................2112.00202000
......................................AATTTGAATCAGGTGAATATAACT......................................................................................................................................................................................................................................................................................................................................2412.00200020
.............................ATTATAGGCAATTTGAAT.....................................................................................................................................................................................................................................................................................................................................................1811.00100010
............................................................................................................................................................................................................TTTGA---------------------------------TTGGA-----CCGAT------AT-ATAGA-TC..................................................................................................................2411.00100010
..................AGGGCCATCAAATTATAGGCA.............................................................................................................................................................................................................................................................................................................................................................2111.00100001
.....................................................................................................................................................................................................................................................GA-----CCGAT------AT-ATAGA-TCCATT..............................................................................................................2011.00100010
.....................................................................................................................................................................................................CAGACGCTTTGA---------------------------------TTGGA-----CC......................................................................................................................................1911.00110000
...................................................................................................................................................................................................AACAGACGCTTTGA---------------------------------TTGGA-----CC......................................................................................................................................2111.00101000
..........................................................................................................................................................................................AACCACCACAACAGACGCTTTGA---------------------------------TTG...............................................................................................................................................2611.00100010
...................................................................................................................................................................................................AACAGACGCTTTGA---------------------------------TTGGA-----C.......................................................................................................................................2011.00100010
................................................................................................................................................................................................CACAACAGACGCTTTGA---------------------------------TTG...............................................................................................................................................2011.00100010
....................................................................................................................................................................................................ACAGACGCTTTGA---------------------------------TTGGA-----C.......................................................................................................................................1911.00110000
............................AATTATAGGCAATTTGAATCAGGT................................................................................................................................................................................................................................................................................................................................................2411.00100010
.................................................................................................................................................................................................ACAACAGACGCTTTGA---------------------------------TTGGA-----C.......................................................................................................................................2211.00100010
.......................................................................................................................................................................................................GACGCTTTGA---------------------------------TTGGA-----CCGAT------AT-ATAGA-....................................................................................................................2711.00101000
.................................................................................................................................................................................................ACAACAGACGCTTTGA---------------------------------TT................................................................................................................................................1811.00100010
..CAAGTACAGACCTTGCAGGGCC............................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....GTACAGACCTTGCAGGGC.............................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................CA------ACAGCAAACACAACCACCACAACAGA...........................................................................................................................................................................................2811.00100010
...........................................................................AACAG---------------------------------------------------------------------------------CAGCAACA------ACAGCA...............................................................................................................................................................................................................19200.05100010
droVir3
CCCAGGTGCAAACGTTGCAGGGTCATCAGATAATTGGCAATTTGAATCAGGTGAATATGACTGATTTTCAACAGCAACAACAATCACAACAACAACAGCAGCA------------GC---A---------A---CAG---CA---GC---AGCA---GCAACAACAACA------ACAACAAACAACACAACCACCACAGACGCTTTGAGTAGCA-CGTACAGCT-------CTGACG--AATCGAA-----CCGAA------TC-ATAGA-CCCCCTTTA-----T-TATAA--ACCCAATCCCTGAC-TTGGTTCT----------------------------C-----CAATATGCTT-----AA--------------CTCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................TACAGCT-------CTGACG--AATCGAA-----C.......................................................................................................................................2113.003000000000000000000000001001000000000000000000000000000000000010
.....................................................................................................................................................................................................CAGACGCTTTGAGTAGCA-CGT.........................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000110
....................................................................................................................................................................................................ACAGACGCTTTGAGTAGCA-CG..........................................................................................................................................................................2112.002000000000000000001010000000000000000000000000000000000000000000
.........AAACGTTGCAGGGTCATC.........................................................................................................................................................................................................................................................................................................................................................................1812.002000000002000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CAAACAACACAACCACCACAG............................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GACG--AATCGAA-----CCGAA------TC-A.........................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
..........................................TGAATCAGGTGAATATGACTGA....................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCT----------------------------C-----CAATATGCTT-----AA--------------CTCTT2111.001000000000000000000000000000100000000000000000000000000000000000
..CAGGTGCAAACGTTGCAGGGTCA...........................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
................................ATTGGCAATTTGAATCAGGTGAATAT..........................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.................................................................TTTCAACAGCAACAACAATCACAAC..........................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCT-------CTGACG--AATCGAA-----CCGA....................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
....GGTGCAAACGTTGCAGGGTCC...........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.................................................GGTGAATATGACTGATTTTC...............................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AA--ACCCAATCCCTGAC-TTGG..........................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TAGCA-CGTACAGCT-------CTGACG--A...................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CACAACCACCACAGACGCTTTGA...................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TCT----------------------------C-----CAATATGCTT-----AA--------------CTCT.2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTAGCA-CGTACAGCT-------CTGACG--....................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....GTGCAAACGTTGCAGGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
................GCAGGGTCATCAGATAATTGG...............................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
........................ATCAGATAATTGGCAATTTGAATC....................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................ATCACAACAACAACAGCAGCA------------GC---............................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..................AGGGTCATCAGATAATTGGCAAT...........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................AACAGCAACAACAATCACAACAACA......................................................................................................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
................................................................................CAATCACAACAACAACAGCAG...............................................................................................................................................................................................................................................................................................2140.251001000000000000000000000000000000000000000000000000000000000000
.................................................................................AATCACAACAACAACAGCAGC..............................................................................................................................................................................................................................................................................................2140.251000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................ACAACAACA------ACAACAAACAACA........................................................................................................................................................................................................22200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................A------------GC---A---------A---CAG---CA---GC---AGCA---GCAACA.................................................................................................................................................................................................................................22200.102000000000000000000000000002000000000000000000000000000000000000
..............................................................................................ACAGCAGCA------------GC---A---------A---CAG---CA---GC---A.............................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................CACAACAACAACAGCAGCA------------GC---............................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................AGCA------------GC---A---------A---CAG---CA---GC---AGCA---GCA....................................................................................................................................................................................................................................22200.051000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................G---CA---GC---AGCA---GCAACAACAACA------ACAAC................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
........................................................................................ACAACAACAGCAGCA------------GC---A---------..................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................CACAACAACAACAGCAGCA------------GC---A---------..................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AG---CA---GC---AGCA---GCAACAACAACA------AC...................................................................................................................................................................................................................24200.051000000000000000100000000000000000000000000000000000000000000000
............................................................................................CAACAGCAGCA------------GC---A---------A---CAG---CA---GC---AG............................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................AACAACAGCAGCA------------GC---A---------A---CAG---CA---...................................................................................................................................................................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................A---GC---AGCA---GCAACAACAACA------ACAAC................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
......................................................................................CAACAACAACAGCAGCA------------GC---A---------..................................................................................................................................................................................................................................................................20200.051000000000000010000000000000000000000000000000000000000000000000
droMoj3
CTCAGGTGCAAACGTTGCAGGGTCATCAGATCATTGGCAACTTGAATCAGGTGAATATGACTGATTTTCAACAGCAACAACAACAGCAACAGCAGCAGCA---------------AC---A---------------------------------ACAACAGCAGCAGCA------ACAGCAACA---ACAACCACCACAGACGCTTTGAGTAGCA------AGCTCTCACTTATGACAAAAATCGAA-----CCGAA------TC-ATACA-CCCACT-------AT-TATAG--ACCCAATCCAAGAC-CTGGTTCT--CC------------------------------GATTATGCTT-----AA--------------CTCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................AC-CTGGTTCT--CC------------------------------GATTATGCT...........................2111.001100000
....GGTGCAAACGTTGCAGGGTCA...........................................................................................................................................................................................................................................................................................................................................................................2111.001000100
......................................................................................................................................................................................................AGACGCTTTGAGTAGCA------AG.....................................................................................................................................................................1911.001100000
.........AAACGTTGCAGGGTCATCAGATC....................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................GACAAAAATCGAA-----CCGAA------TC-..........................................................................................................................2011.001100000
.......................CATCAGATCATTGGCAACTTGAAT.....................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........AACGTTGCAGGGTCATCA........................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.................................................................................................................................................................................................................................................ATCGAA-----CCGAA------TC-ATACA-CC..................................................................................................................2011.001000010
.............................................................................................................................................................ACAGCAGCAGCA------ACAGCAACA---.........................................................................................................................................................................................................21200.408800000
..........................................................................................................................................................ACAACAGCAGCAGCA------ACA..................................................................................................................................................................................................................18200.102000020
............................................................................................................................................................AACAGCAGCAGCA------ACAGCAACA---.........................................................................................................................................................................................................22200.102002000
...................................................................................................................AC---A---------------------------------ACAACAGCAGCAGCA------.....................................................................................................................................................................................................................18200.102000020
..........................................................................................AGCAGCAGCA---------------AC---A---------------------------------ACAACAG...................................................................................................................................................................................................................................20200.051000010
....................................................................CAACAGCAACAACAACAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................28200.051100000
.........................................................................GCAACAACAACAGCAACAGC.......................................................................................................................................................................................................................................................................................................20200.051100000
..............................................................................AACAACAGCAACAGCAGCAGCA---------------AC---............................................................................................................................................................................................................................................................................24200.051100000
...................................................................................................................AC---A---------------------------------ACAACAGCAGCAGCA------ACAGC................................................................................................................................................................................................................23200.051100000
.................................................................................................GCA---------------AC---A---------------------------------ACAACAGCAGCAGCA------ACA..................................................................................................................................................................................................................24200.051100000
................................................................................CAACAGCAACAGCAGCAGCA---------------AC---A---------------------------------..........................................................................................................................................................................................................................................23200.051001000
...............................................................................ACAACAGCAACAGCAGCAGCA---------------AC---A---------------------------------ACA.......................................................................................................................................................................................................................................27200.051100000
......................................................................................CAACAGCAGCAGCA---------------AC---A---------------------------------ACAACAGCAG................................................................................................................................................................................................................................27200.051000010
...............................................................................ACAACAGCAACAGCAGCAGCA---------------.................................................................................................................................................................................................................................................................................21200.051000010
................................................................................................AGCA---------------AC---A---------------------------------ACAACAGCAGCAGCA------ACAGC................................................................................................................................................................................................................27200.051100000
..........................................................................................................................................................ACAACAGCAGCAGCA------ACAGCAACA---.........................................................................................................................................................................................................24200.051000010
droGri2
CTCAGGTGCAAACGTTGCAGGGTCATCAGATCATTGGCAATATAAATCAGGTGAATATGACTGATTTTCAACAACAACAGCAACAGCCGCAGCAGCAACAACAGCAGCAGCAGCAGC---A---------GCAACAACA------AC---AACAACCACAGCAACAACA------ACAACAAAC---ACAACCACAACAGACGCTTTGAGTAGCAACA---AGCA-ACA-TTTTGACG--AATCGGA-----CGGAA------TC-GTAGAAAACATA-------AATTTTTGATACCCAATCCC--------------------------TTGACT-T------GG-----TTCACCACAA-----TAC-GCTTTA------CTCTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................TTGACT-T------GG-----TTCACCACAA-----TAC-G................2311.00110
...........................................................................................................................................................................................................................................ACG--AATCGGA-----CGGAA------TC-GTAGAA....................................................................................................................2311.00110
...............................................................................GCAACAGCCGCAGCAGCAACA................................................................................................................................................................................................................................................................................................2170.14110
.................................................................................................ACAACAGCAGCAGCAGCAGC---A---------G.................................................................................................................................................................................................................................................................22200.05110
.................................................................................................ACAACAGCAGCAGCAGCAGC---A---------GCA...............................................................................................................................................................................................................................................................24200.05110

Generated: 05/17/2015 at 10:05 PM