dse_444

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	+
TART_DV	LINE	Jockey	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGACTGACGAATGAGCAGCGAATCCTCTTGCAGCAGCAACAACAGCAGCAGCAGCGTCAAGCTCAAATGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAAGTCGTTGTTGTTGCCAATCCGCAGCAACAACCGCAACAAC *******************************************************************************************************...(((..(((((.....((.((........((((....))))........)).))..)))))..)))...(((....)))......*********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V113 male body	V114 embryo	V115 head
.........................................................................................................CACGGGACTGACGAATGAGCAGCGAATCC.....................................................................................................................	29	0	1	1.00	1	0	1	0	0
.......................................CGAGCAGGGACGAAAGGCGG................................................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0
.......................................CGAGCAGGGACGAAAGTCGGT...............................................................................................................................................................................................	21	3	5	0.80	4	2	2	0	0
.......................................CGAGCAGGGACGAAAGTCGGTC..............................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0
.......................................CGAGCAGGGACGAAAGGCGGG...............................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0
........................................GAGCAGGGACGTAAGTCGGGC..............................................................................................................................................................................................	21	3	3	0.33	1	1	0	0	0
......................................................................................................................................TCTTTGAGCAGCAACAACAGC................................................................................................	21	2	4	0.25	1	0	0	1	0
....TATCGATACATTCAACGG.....................................................................................................................................................................................................................................	18	2	5	0.20	1	1	0	0	0
............................................................................................................................................................................CAAATGCAGCAGCAGCAACA...........................................................	20	0	7	0.14	1	0	0	1	0
................................................................................................TCTGACTCACGGGGGACTG........................................................................................................................................	19	3	9	0.11	1	0	1	0	0
...........................................................................................................................................................................................CAACAACAACAGCAGCAGCAGC..........................................	22	0	20	0.10	2	0	0	2	0
..............................................................................................................................................CAGCAACAACAGCAGCAGCAG........................................................................................	21	0	20	0.10	2	0	2	0	0
...........................................................................................................................................................................................CAACAACAACAGCAGCAGCAG...........................................	21	0	20	0.10	2	0	0	0	2
.............................................................................................................................................................................AAATGCAGCAGCAGCAAC............................................................	18	0	11	0.09	1	0	0	1	0
...............................................................................................................................................AGCAACAACAGCAGCAGCATCG......................................................................................	22	1	15	0.07	1	0	0	1	0
...........................................................................................................................................................................................CAACAACAACAGCAGCAGCAGCA.........................................	23	0	20	0.05	1	0	0	1	0
......................................................................................................................................TCTTTGAGCAGCAACAAC...................................................................................................	18	2	20	0.05	1	0	0	1	0
............................................................................................................................................................................................AACAACAACAGCAGCAGCAGC..........................................	21	0	20	0.05	1	0	0	1	0
........................................GAGTAGGGACGAAAGTCGG................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0

ACGGTTAGCTATGTAAGTTGTCAAGGCGCTCTAGAAGTGGCTCCTCCCTGCATTCCGCCAGTTTTAGTGCGTAAACTATGGGCCCGTACACGGTTAACACTGAGTGTGCCCTGACTGCTTACTCGTCGCTTAGGAGAACGTCGTCGTTGTTGTCGTCGTCGTCGCAGTTCGAGTTTACGTCGTCGTCGTTGTTGTTGTCGTCGTCGTCGTTCAGCAACAACAACGGTTAGGCGTCGTTGTTGGCGTTGTTG *********************************************************...(((..(((((.....((.((........((((....))))........)).))..)))))..)))...(((....)))......*******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	M054 female body	V114 embryo
.................................................................................................................................................................................................................TTCGGCAATAACAACGGTTA......................	20	2	2	0.50	1	1	0	0
....................................................................................................................................................................................................................AGTAACAAGAACGGTTAG.....................	18	2	9	0.11	1	0	1	0
................................................................................................................................................CGTTGTTGTCGTCGTCGTC........................................................................................	19	0	20	0.10	2	0	0	2

Species	Coordinate	ID	Alignment
droSec2	scaffold_0:5674205-5674455 +	dse_444	TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGACTGACGAATGAGCAGCGAATCCTCTTGCAGCAGCAACAACAGCAGCA---------GCAGCGTCAAGCTCAAATGCAGCAGCAGCA---------------------------------------ACAACAACAGCA---G------------C------AGCAGCAAGTCGTTGTTGTTGCCAATCCGCAGC------------------------------------------AACAACCG------------CAACAAC
droSim2	3l:13202628-13202881 +		TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGATTGACGAATGAGCAGCGGATCCTCTTGCAGCAGCAACAACAGCAGCA---------GCAGCGTCAAGCTCAAATGCAGCAGCAGCA---------------------------------------ACAACAACAGCA---G------------C------AGCAGCAAGTCGTTGTTGTTGCCAATCCGCAGC---------------------------------------AACAATCGCAA------------CAACAAC
dm3	chr3L:13498905-13499152 +		TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATATGCCAATTGTGACTCACACGGGATTGACGAATGAGCAGCGGATCCTCTTGCAGCAGCAACAACAGCAGCA---------GCAGCGTCAAGCTCAAATGCAGCAGCAACA------------------------------------------ACAACAGCA---G------------C------AGCAGCAAGTCGTTGTTGTTGCCAATCAG------------------------------------------CAGCAACAATCG------------CAACAAC
droEre2	scaffold_4784:13511742-13511998 +		TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATTGTGACTCACACGGGATTGACGAACGAGCAGCGGATCCTCTTGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCGTCAAGCTCAAATGCAACAGCAACA------------------------------------------ACAG---CA---G------------C------ATCAGCAAGTCGTTGTTGTCGCCAATCCGCAAC---------------------------------------AGCAGCCGCAA------------CAACAAC
droYak3	3L:13601943-13602208 +		TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGATTGACGAATGAGCAGCGGATCCTCTTGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCGTCAAGCTCAAATGCAACAGCAACA------------------------------------------ACAG---CA---G------------C------AACAGCAAGTCGTTGTGGTCGCCAATCCGCAACAGCAACAG------------------------------CAACCGCAGCAA------------CAACAGC
droEug1	scf7180000409121:44420-44703 +		TGCAAATCGATACATTCAGCAATTCCGCGAGATCTTCACCGAGGAGGGGCGAAAGGCTGTCAAAATCACGCATTTGATACCAGGGCATGCGCCCATCGTGACTCACACTGGACTGACGAACGAACAGCGAATCCTCTTGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCGGCAAGCTCAAATGCAACAGCAACA------------------------------------------ACAG---------------------C------ATCAGCAAGTTGTAGTTGTAGGTAATCCACCACAGCAGCAGCAACAACAGCCCCAGCAGCA---------GCAACAACAACAG------------CAGCAAC
droBia1	scf7180000302428:1289508-1289776 -		TGCCAATCGATACATTCAGCAGTTCCGAGAGATCTTCACCGAGGAGGGACGCAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATTGTGACTCACACGGGCTTGACGAACGAGCAGCGGATCCTCTTGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCGACAGGCTCAATTGCAGCAGCAGCA------------------------------------------ACAACAGCA---G------------CAGCAACAGCAGCAAGTTGTTGTCGTCAGTAATCCCCAGCAACAA------------------------------------CAACCGCAG------------CAGCCAC
droTak1	scf7180000415862:24326-24591 +		TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGACGCAAGGCGGTCAAAATCACGCATTTGATACCCGGCCATGTGCCAATTGTGACGCACACGGGTCTGACGAATGAGCAGCGCATCCTGTTGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCGACAGGCTCAACTGCAGCAGCAGCA---------------------------------------GCAACAACAGCA---G------------CAGCAGCCACAACAAGTTGTGATTGTAGGCAATCCTCAGCAGCA------------------------------------------ACAG------------CAGCAGC
droEle1	scf7180000491255:1951284-1951495 +		TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATCGTCACCCACACGGGACTGACGAACGAGCAGCGCATCCTGTTGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCGGCAGG------------AGAGACA------------------------------------------A---CAGCA---A------------A------CGCAGCAGATTATTGGTG------------------------------------------------------------------------------------
droRho1	scf7180000779509:96570-96868 +		TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCTGGGCATGTTCCGATCGTAACCCACACGGGATTGACGAACGAGCAGCGGATCCTTTTGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCGGCAAACTCAATTGCAGCAACAACA------------------------------------------ACAGCAGCA---G------------C------CGCAGCATGTTGTGGTTGTCGCCAATCCGCAGCAACAGCAACAGCAGCAGCCACAACAACAACAACAACCGCAGCAGCAACAA------------CAGCAAC
droFic1	scf7180000454048:199331-199617 -		TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATCGTTACGCACACGGGATTGACGAACGAGCAGCGGATCCTGTTGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGAGGCAAGCCCAGTTGCAGCAGCAGCA------------------------------------------GCAGCAGCA---ACAACAACAACAGCAGCAACAACAGCATGTGGTTGTTGTGGGCAATCCCCAACAACAACAG------------------------------CAGCAGCCGCAG------------CAACAAC
droKik1	scf7180000302808:510315-510565 -		TGCCAACCGGTACATTCAACAGTTCCGCGAGATCTTCACTGAGGAGGGGCGCAAGGCGGTCAAGATCACGCACTTAGTGCCCGGACATGTGCCAATTGTGACCCACACGGGGCTGACGAACGAGCAGCGGATTATTTTGCAGCAGCAGCAGCAACAGCA---GCAGCAGCAGAGACAAGCTCAGTTGCAGCACCAACA------------------------------------------ACAGCAGCA---G------------C------AGCAGCACGTGGCTGTTGTGAGTAATCCCCCGCA---------------------------------------------ACAG------------CAACAAC
droAna3	scaffold_13337:21935667-21935899 -		TGCCAATAGGTACATTCAACAGTTCCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCTGTTAAGATCACGCATTTAATACCCGGACACGTGCCAATCGTTACTCACACGGGCCTAACAAGTGAGCAGCGAATGCTCTTGCAGCAACAACAGCAGCAGCAACAGCAGCAACAACA------------GCAACAGCAGCA---------------------------------------GCAACAGCAGCA---G------------C------AGCAGCAA------------------------------------------------CAGCA---------GCAGCAACAGCTG------------CAGCAAC
droBip1	scf7180000396730:406621-406838 -		TGCCAATCGGTACATTCAACAGTTCCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCTGTTAAGATCACGCATTTAATACCCGGACATGTGCCAATCGTTACCCACACGGGGCTGACAAGTGAGCAGCGAATTCTTCTGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAGCA---------------------ACA------------------------------------------ACAG---CAGCAG---------------------CAACAA------------------------C------------------------AGCA---------GCCGCAACCTCTG------------CAGCAAC
dp5	XR_group8:6934486-6934763 -		TGCCAATCGATACATTCAGCAATTTCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCGGTCAAGATAACGCATTTGATACCAGGACATGTGCCAATTGTCACCCACACGGGGCTGACGAACGAGCAGCGGCTCCTCCTGCAGCAGCAACAACAGCAGCA---------GCAGAGGCAAGCTCAATTGCAGCAGCAGCA------------------------------------------ACAGCAGCA---GCAACAACAACAGC------CGCAGCATGTGGTAGTGGTCGGCAATCCCCAGCACCAACAA---------------CAGCA---------GCAACAACAACAA------------CAACAAC
droPer2	scaffold_36:373084-373355 +		TGCCAATCGATACATTCAGCAATTTCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCGGTCAAGATAACGCATTTGATACCAGGACATGTGCCAATTGTCACCCACACGGGGCTGACGAACGAGCAGCGGCTCCTCCTGCAGCAGCAACAACAGCAGCA---------GCAGAGGCAAGCTCAATTGCAGCAGCAGCA------------------------------------------ACAGCAGCA---GCAACAACAACAGC------CGCAGCATGTGGTAGTGGTCGGCAATCCCCAGCACCAACAA------------------------------CAGCAACAACAA------------CAACAAC
droWil2	scf2_1100000004511:750047-750315 -		TGCCAATCGTTATATACAGCAATTTCGTGAGATTTTCACTGAAGAGGGACGCAAAGCGGTTAAAATAACGCATCTAATACCAGGACATGTGCCAATTGTTACCCATACGGGATTAACCAATGAGCAGAGATTGTTAATGCAGCAGCAACAACAGCGAC------AGCAGCAACATCAGGCTCAACTCCAGCAACAGCA---------------------------------GCAGCAGCAACAACAGCAGCAGCAACAACAACAACAACAGCAACAACATGTTGTTGTTGTCAATCA------------------------------------------------------ACCT------------CAACAAC
droVir3	scaffold_13049:17613675-17613955 +		TGCGAATCGTTATATTCAGCAATTCCGGGAGATATTCACTGAGGAGGGACGCAAGGCTGTTAAGATTACGCATCTGATACCCGGACATGTGCCAATTGTCACCCACACTGGACTAACTAATGAGCAGCGGTTACTATTGCAGCAGCAACAGCAGCAGCA---------GCAACAACAA---------CAGCAGCAGCAACAACAGCAACAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCA---G------------C------AGCAACA------------------TCAGCAGCAGCAGCAA---------------CATCA---------GCAACAACAACAA------------CAACAGC
droMoj3	scaffold_6680:22658436-22658659 +		TGCGAATCGATATATTCAGCAATTCCGGGAAATATTTACTGAAGAGGGACGCAAGGCTGTTAAAATCACGCACCTTATACCCGGACATGTGCCAATTGTTACCCACACTGGACTTACAAATGAACAACGATTGTTGTTGCAGCAGCAGCAGCAGCAACAACAACAGCAACAGCA------------GCAGCAGCA---------------------------------------------ACAACAACA---G------------C------AACAAC---------------------------------------------------ATCA---------GCAGCAACAACAA------------CAGCAGC
droGri2	scaffold_15110:14567064-14567296 -		TGCGAATCGCTATATTCAGCAATTCCGCGAGATATTCACTGAGGAGGGACGCAAGGCTGTTAAAATTACGCATCTGATACCTGGACATGTGCCAATTGTTACCCACACTGGACTAACCAATGAGCAGCGATTGCTATTGCAGCAGCAACAGCAACAACAACAGCAGCAACAACA------------GCAGCAGCAACA------------------------------------------ACAACAGCA---G------------C------AGCAG------------------------------------------------------------------CAGCAACGACAAGTCCAGTTTACTCAGCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGACTGACGAATGAGCAGCGAATCCTCTTGCAGCAGCAACAACAGCAGCA---------GCAGCGTCAAGCTCAAATGCAGCAGCAGCA---------------------------------------ACAACAACAGCA---G------------C------AGCAGCAAGTCGTTGTTGTTGCCAATCCGCAGC------------------------------------------AACAACCG------------CAACAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................CACGGGACTGACGAATGAGCAGCGAATCC................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................CAAATGCAGCAGCAGCA---------------------------------------ACA......................................................................................................................................	20	7	0.14	1	0	0	1	0
....................................................................................................................................................................................................CA---------------------------------------ACAACAACAGCA---G------------C------AGCAGC................................................................................................	22	20	0.10	2	0	0	2	0
..............................................................................................................................................CAGCAACAACAGCAGCA---------GCAG..........................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0
....................................................................................................................................................................................................CA---------------------------------------ACAACAACAGCA---G------------C------AGCAG.................................................................................................	21	20	0.10	2	0	0	0	2
......................................................................................................................................................................................AAATGCAGCAGCAGCA---------------------------------------AC.......................................................................................................................................	18	11	0.09	1	0	0	1	0
....................................................................................................................................................................................................CA---------------------------------------ACAACAACAGCA---G------------C------AGCAGCA...............................................................................................	23	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................A---------------------------------------ACAACAACAGCA---G------------C------AGCAGC................................................................................................	21	20	0.05	1	0	0	1	0

droSim2

TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGATTGACGAATGAGCAGCGGATCCTCTTGCAGCAGCAACAACAGCAGCA---------GCAGCGTCAAGCTCAAATGCAGCAGCAGCA---------------------------------------ACAACAACAGCA---G------------C------AGCAGCAAGTCGTTGTTGTTGCCAATCCGCAGC---------------------------------------AACAATCGCAA------------CAACAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................ATTTGATACCCGGGCATG.............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GCGAGATCTTCACCGAGGAGGGAC....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GCAGCGTCAAGCTCA...............................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AGCAAGTCGTTGTTGTTGCC...............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................ACAGCAGCA---------GCAGCGTCA.....................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CGGGATTGACGAATGAGC.........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AATGCAGCAGCAGCA---------------------------------------ACAA.....................................................................................................................................	19	8	0.88	7	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGCAGCAACAACAGCAGCA---------GCA...........................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGCA---------------------------------------ACAACAACAGCA---G------------C------AGCAGC................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................GCAACAACAGCAGCA---------GC............................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGACGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATATGCCAATTGTGACTCACACGGGATTGACGAATGAGCAGCGGATCCTCTTGCAGCAGCAACAACAGCAGCA---------GCAGCGTCAAGCTCAAATGCAGCAGCAACA------------------------------------------ACAACAGCA---G------------C------AGCAGCAAGTCGTTGTTGTTGCCAATCAG------------------------------------------CAGCAACAATCG------------CAACAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................TCACACGGGATTGACGAATGAGCAGC......................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AACAACAGCAGCA---------GCAGCGTC......................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ATGCCAATTGTGACTCACACGGGATTGAC.................................................................................................................................................................................................................................................................	29	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TGCCAATTGTGACTCACACGGGATT....................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AAATGCAGCAGCAACA------------------------------------------ACAACAGCA---G------------C------......................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................A---------GCAGCGTCAAGCTCAAATGCAGCAG.....................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................CAGCAACAACAGCAGCA---------G.............................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................CAACA------------------------------------------ACAACAGCA---G------------C------AGCAGCAA..............................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGCAACA------------------------------------------ACAACAGCA---G------------C------AGCAGT................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CAACAACAGCAGCA---------GCAGC.........................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CAGCAACAACAGCAGCA---------GCAGC.........................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATTGTGACTCACACGGGATTGACGAACGAGCAGCGGATCCTCTTGCAGCAACAGCAGCAACAACAGCAGCAGCAGCAGCGTCAAGCTCAAATGCAACAGCAACA------------------------------------------ACAG---CA---G------------C------ATCAGCAAGTCGTTGTTGTCGCCAATCCGCAAC---------------------------------------AGCAGCCGCAA------------CAACAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................CTCACACGGGATTGACGAAC.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................CACGCATTTGATACCCGGGCATGTGCC.........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................AGCAGCAGCAGCGTCAAGCTCA...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................GCAACAGCAACA------------------------------------------ACAG---CA---G------------C------......................................................................................................	20	20	0.10	2	1	1	0	0	0	0	0
......................................................................................................................................................GCAACAACAGCAGCAGCAGCA...........................................................................................................................................................................................................	21	20	0.10	2	1	0	0	0	1	0	0
...................................................................................................................................................GCAGCAACAACAGCAGCAGCAGCAGC.........................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0
..............................................................................................................................................CAACAGCAGCAACAACAGC.....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
............................................................................................................................................AGCAACAGCAGCAACAACAGC.....................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0
...............................................................................................................................................AACAGCAGCAACAACAGCA....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................CAACAGCAGCAACAACAGCAGCA.................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................................AGCAGCAACAACAGCAGCA.................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0
...................................................................................................................................................GCAGCAACAACAGCAGCAGCAGCAG..........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................AGCAACAACAGCAGCAGCAGC............................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
.........................................................................................................................................................ACAACAGCAGCAGCAGCAGC.........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0

droYak3

TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCAATTGTGACTCACACGGGATTGACGAATGAGCAGCGGATCCTCTTGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCGTCAAGCTCAAATGCAACAGCAACA------------------------------------------ACAG---CA---G------------C------AACAGCAAGTCGTTGTGGTCGCCAATCCGCAACAGCAACAG------------------------------CAACCGCAGCAA------------CAACAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................AACAACAGCAACAGCAGCAGCGTCAAGC..................................................................................................................................................................................................	28	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
..........................................................................................................................AGCAGCGGATCCTCTTGCAGCAGCAGC.................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................AACAGCAACAGCAGCAGCGTCAAGCTC................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................TTGCAGCAGCAGCAGCAACAA.........................................................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AACAGCAACA------------------------------------------ACAG---CA---G------------C------AACAGC................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AACA------------------------------------------ACAG---CA---G------------C------AACAGCA...............................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CAACAACAGCAACAGC...............................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................GCAACAACAGCAACAGCAGC............................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GCAGCAGCAGCAGCAACAACAGC.....................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TGCAAATCGATACATTCAGCAATTCCGCGAGATCTTCACCGAGGAGGGGCGAAAGGCTGTCAAAATCACGCATTTGATACCAGGGCATGCGCCCATCGTGACTCACACTGGACTGACGAACGAACAGCGAATCCTCTTGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCGGCAAGCTCAAATGCAACAGCAACA------------------------------------------ACAG---------------------C------ATCAGCAAGTTGTAGTTGTAGGTAATCCACCACAGCAGCAGCAACAACAGCCCCAGCAGCA---------GCAACAACAACAG------------CAGCAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCCAATCGATACATTCAGCAGTTCCGAGAGATCTTCACCGAGGAGGGACGCAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATTGTGACTCACACGGGCTTGACGAACGAGCAGCGGATCCTCTTGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCGACAGGCTCAATTGCAGCAGCAGCA------------------------------------------ACAACAGCA---G------------CAGCAACAGCAGCAAGTTGTTGTCGTCAGTAATCCCCAGCAACAA------------------------------------CAACCGCAG------------CAGCCAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGACGCAAGGCGGTCAAAATCACGCATTTGATACCCGGCCATGTGCCAATTGTGACGCACACGGGTCTGACGAATGAGCAGCGCATCCTGTTGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCGACAGGCTCAACTGCAGCAGCAGCA---------------------------------------GCAACAACAGCA---G------------CAGCAGCCACAACAAGTTGTGATTGTAGGCAATCCTCAGCAGCA------------------------------------------ACAG------------CAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATCGTCACCCACACGGGACTGACGAACGAGCAGCGCATCCTGTTGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCGGCAGG------------AGAGACA------------------------------------------A---CAGCA---A------------A------CGCAGCAGATTATTGGTG------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCCAATCGATACATTCAACAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCTGGGCATGTTCCGATCGTAACCCACACGGGATTGACGAACGAGCAGCGGATCCTTTTGCAGCAACAGCAGCAGCAACAACAACAGCAGCAGCGGCAAACTCAATTGCAGCAACAACA------------------------------------------ACAGCAGCA---G------------C------CGCAGCATGTTGTGGTTGTCGCCAATCCGCAGCAACAGCAACAGCAGCAGCCACAACAACAACAACAACCGCAGCAGCAACAA------------CAGCAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCCAATCGATACATTCAGCAGTTCCGCGAGATCTTCACCGAGGAGGGGCGTAAGGCGGTCAAAATCACGCATTTGATACCCGGGCATGTGCCGATCGTTACGCACACGGGATTGACGAACGAGCAGCGGATCCTGTTGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGAGGCAAGCCCAGTTGCAGCAGCAGCA------------------------------------------GCAGCAGCA---ACAACAACAACAGCAGCAACAACAGCATGTGGTTGTTGTGGGCAATCCCCAACAACAACAG------------------------------CAGCAGCCGCAG------------CAACAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCCAACCGGTACATTCAACAGTTCCGCGAGATCTTCACTGAGGAGGGGCGCAAGGCGGTCAAGATCACGCACTTAGTGCCCGGACATGTGCCAATTGTGACCCACACGGGGCTGACGAACGAGCAGCGGATTATTTTGCAGCAGCAGCAGCAACAGCA---GCAGCAGCAGAGACAAGCTCAGTTGCAGCACCAACA------------------------------------------ACAGCAGCA---G------------C------AGCAGCACGTGGCTGTTGTGAGTAATCCCCCGCA---------------------------------------------ACAG------------CAACAAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGCCAATAGGTACATTCAACAGTTCCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCTGTTAAGATCACGCATTTAATACCCGGACACGTGCCAATCGTTACTCACACGGGCCTAACAAGTGAGCAGCGAATGCTCTTGCAGCAACAACAGCAGCAGCAACAGCAGCAACAACA------------GCAACAGCAGCA---------------------------------------GCAACAGCAGCA---G------------C------AGCAGCAA------------------------------------------------CAGCA---------GCAGCAACAGCTG------------CAGCAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................CTCACACGGGCCTAACAAGTGAGCAGCG.....................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................AAGGCTGTTAAGATCACGC...............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............CATTCAACAGTTCCGCGAGAT.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................GGGCCTAACAAGTGAGCAGC......................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................ACAACAGCAGCAGCAACAGC..................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
.......................................................................................................................................................................AACAACA------------GCAACAGCAGCA---------------------------------------GCAACA...................................................................................................................................	25	8	0.13	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................CAACAGCAGCA---G------------C------AGCAGCA...............................................................................................	20	20	0.10	2	0	0	0	0	0	2
........................................................................................................................................................................ACAACA------------GCAACAGCAGCA---------------------------------------GCAAC....................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0
....................................................................................................................................................................AGCAACAACA------------GCAACAGCAGCA---------------------------------------GC.......................................................................................................................................	24	13	0.08	1	0	0	0	0	0	1
............................................................................................................................................................................CA------------GCAACAGCAGCA---------------------------------------GCAACAGCAGCA---..........................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
..................................................................................................................................................................GCAGCAACAACA------------GCAACAGCAGCA---------------------------------------.........................................................................................................................................	24	14	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................................................................A---------------------------------------GCAACAGCAGCA---G------------C------AGCAGCAA------------------------------------------------CAGC..........................................	27	14	0.07	1	1	0	0	0	0	0
.........................................................................................................................................................................CAACA------------GCAACAGCAGCA---------------------------------------GCA......................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................A---G------------C------AGCAGCAA------------------------------------------------CAGCA---------GC..............................	18	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................AACAACA------------GCAACAGCAGCA---------------------------------------.........................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................AGCA---------------------------------------GCAACAGCAGCA---G------------C------AGCAGCA...............................................................................................	25	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................AACAGCAGCA---G------------C------AGCAGCAA------------------------------------------------..............................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................A---G------------C------AGCAGCAA------------------------------------------------CAGCA---------GCAGCAAC........................	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................GCAGCAA------------------------------------------------CAGCA---------GCAGCAACAGC.....................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AGCAA------------------------------------------------CAGCA---------GCAGCAACA.......................	19	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................AGCAGCAA------------------------------------------------CAGCA---------GCAGCAA.........................	20	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................CAACAACA------------GCAACAGCAGCA---------------------------------------.........................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................CAGCAGCA---G------------C------AGCAGCAA------------------------------------------------CAGCA---------GCA.............................	26	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................GCA---------------------------------------GCAACAGCAGCA---G------------C------AGCAGCA...............................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................CAGCA---G------------C------AGCAGCAA------------------------------------------------CAGCA---------GCA.............................	23	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................GCAACAGCAGCAACAACA------------............................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................AACA------------GCAACAGCAGCA---------------------------------------GCAACAGC.................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................ACAACAGCAGCAGCAACAG...................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................AGCAACAGCAGCAACAACA------------GC..........................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................CAACAGCAGCA---------------------------------------GCAACAGCAGCA---G------------C------......................................................................................................	25	20	0.05	1	0	1	0	0	0	0

droBip1

TGCCAATCGGTACATTCAACAGTTCCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCTGTTAAGATCACGCATTTAATACCCGGACATGTGCCAATCGTTACCCACACGGGGCTGACAAGTGAGCAGCGAATTCTTCTGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAGCA---------------------ACA------------------------------------------ACAG---CAGCAG---------------------CAACAA------------------------C------------------------AGCA---------GCCGCAACCTCTG------------CAGCAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCCAATCGATACATTCAGCAATTTCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCGGTCAAGATAACGCATTTGATACCAGGACATGTGCCAATTGTCACCCACACGGGGCTGACGAACGAGCAGCGGCTCCTCCTGCAGCAGCAACAACAGCAGCA---------GCAGAGGCAAGCTCAATTGCAGCAGCAGCA------------------------------------------ACAGCAGCA---GCAACAACAACAGC------CGCAGCATGTGGTAGTGGTCGGCAATCCCCAGCACCAACAA---------------CAGCA---------GCAACAACAACAA------------CAACAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................CTTCACGGAGGAGGGGCGCAAGGC.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................ATAACGCATTTGATACCAGGACATGTG...........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CGGGGCTGACGAACGAGCAGC......................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCAGCAGCAGCA------------------------------------------ACAGCAGCA---..........................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAGCA------------------------------------------ACAGCAGCA---GCAACAACAACAG.............................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................CTGCAGCAGCAACAACAG............................................................................................................................................................................................................................	18	11	0.09	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AA---------------CAGCA---------GCAACAACAACAA------------CAACA..	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CAACAA---------------CAGCA---------GCAACAACAA......................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACAA---------------CAGCA---------GCAACAACAACA....................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................A------------------------------------------ACAGCAGCA---GCAACAACAACAG.............................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

TGCCAATCGATACATTCAGCAATTTCGCGAGATCTTCACGGAGGAGGGGCGCAAGGCGGTCAAGATAACGCATTTGATACCAGGACATGTGCCAATTGTCACCCACACGGGGCTGACGAACGAGCAGCGGCTCCTCCTGCAGCAGCAACAACAGCAGCA---------GCAGAGGCAAGCTCAATTGCAGCAGCAGCA------------------------------------------ACAGCAGCA---GCAACAACAACAGC------CGCAGCATGTGGTAGTGGTCGGCAATCCCCAGCACCAACAA------------------------------CAGCAACAACAA------------CAACAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................GCATTTGATACCAGGACATGT............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................GCA------------------------------------------ACAGCAGCA---GCAACAACAACAGC------......................................................................................................	26	11	0.09	1	0	1	0	0	0	0
................................................................................................................................................GCAACAACAGCAGCA---------GCAG..........................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................ACAGCAGCA---GCAACAACA.................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droWil2

TGCCAATCGTTATATACAGCAATTTCGTGAGATTTTCACTGAAGAGGGACGCAAAGCGGTTAAAATAACGCATCTAATACCAGGACATGTGCCAATTGTTACCCATACGGGATTAACCAATGAGCAGAGATTGTTAATGCAGCAGCAACAACAGCGAC------AGCAGCAACATCAGGCTCAACTCCAGCAACAGCA---------------------------------GCAGCAGCAACAACAGCAGCAGCAACAACAACAACAACAGCAACAACATGTTGTTGTTGTCAATCA------------------------------------------------------ACCT------------CAACAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......CGTTATATACAGCAATTTCGTGAGAT.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.................................................................................................................TAACCAATGAGCAGAGATTGT................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
..............................GATTTTCACTGAAGAGGGACGCA.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................ACTCCAGCAACAGCA---------------------------------GCAGCAGCA......................................................................................................................................	24	2	0.50	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................AACAACAACAACAACAGCAACA..................................................................................................	22	20	0.20	4	0	0	0	4	0
........................................................................................................................................................................................CTCCAGCAACAGCA---------------------------------GCAGCAGC.......................................................................................................................................	22	6	0.17	1	0	0	0	1	0
.....................................................................................................................................................AACAGCGAC------AGCAGCAAC.........................................................................................................................................................................................................	18	16	0.06	1	0	0	0	1	0
......................................................................................................................................................ACAGCGAC------AGCAGCAACA........................................................................................................................................................................................................	18	18	0.06	1	0	0	0	1	0
........................................................................................................................................................................................................................................................AGCAGCAACAACAACAAC............................................................................................................	18	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................GCAGCAGCAACAACAGCAGCAGCAAC.....................................................................................................................	26	20	0.05	1	0	1	0	0	0

droVir3

TGCGAATCGTTATATTCAGCAATTCCGGGAGATATTCACTGAGGAGGGACGCAAGGCTGTTAAGATTACGCATCTGATACCCGGACATGTGCCAATTGTCACCCACACTGGACTAACTAATGAGCAGCGGTTACTATTGCAGCAGCAACAGCAGCAGCA---------GCAACAACAA---------CAGCAGCAGCAACAACAGCAACAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCA---G------------C------AGCAACA------------------TCAGCAGCAGCAGCAA---------------CATCA---------GCAACAACAACAA------------CAACAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................AATGAGCAGCGGTTACTATTGCAGCA......................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGTTATATTCAGCAATTCCGGG.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CGGACATGTGCCAATTGTCACCCACACTGGACTAACTAATGAGCAG.......................................................................................................................................................................................................................................................	46	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................TGATACCCGGACATGTGCCA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ATTACGCATCTGATACCCGGACATGTGC..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................ACGCATCTGATACCCGGACAT..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCAGCAGCAGCAGCAA---------------CATCA---------GCAAA...........................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................C------AGCAACA------------------TCAGCAGCAGCAGC...............................................................	22	20	0.40	8	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................C------AGCAACA------------------TCAGCAGCAGCAG................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................ACAACAACAGCAGCAGCA.........................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..........................................................................................................................................................................................................................................GCAGCAACAACAGCA---G------------C------AGCA..................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAACAACAGC..............................................................................................................................	28	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CAGCAGCAA---------------CATCA---------GCAACAA.........................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AACA------------------TCAGCAGCAGCAGCA..............................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AACAGCAGCAGCA---------GCAACAAC......................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GCAGCAGCAACAACAGCA---G------------C------A.....................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CA---G------------C------AGCAACA------------------TCAGCAGC.....................................................................	19	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GCAGCAGCAACAACAGCA---G------------C------......................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCA......................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................GCAGCA---------GCAACAACAA---------CAGCAGCA...................................................................................................................................................................................	24	20	0.10	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AA---------CAGCAGCAGCAACAACAGCA.......................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................A---------GCAACAACAA---------CAGCAGCA...................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGCAACAACAGCA---G------------C------AGCA..................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAACAACAA---------CAGCAGCAGC.................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................ACAGCA---G------------C------AGCAACA------------------TCAGC........................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ACAACAGCA---G------------C------AGCAACA------------------TCA..........................................................................	21	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GCAGCAGCAA---------------CATCA---------GCAAC...........................	20	16	0.06	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CAGCA---------GCAACAACAA---------CAGCAGCA...................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGCAGCAACAACAGCAACA....................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AGCAACAGCAGCAGCA---------GCAAC.........................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GCAACAACAA---------CAGCAGCAGC.................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AA---------CAGCAGCAGCAACAACAGC........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGCAGCAACAACAGCAACAAC..................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AACAA---------CAGCAGCAGCAACAACA..........................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAACAA---------CAGCAGCAGCAACAACAGCA.......................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CA------------------TCAGCAGCAGCAGCAA---------------C.............................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAACA------------------TCAGCAGCAGCAGCA..............................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................A---------GCAACAACAA---------CAGCAGCAGCAAC..............................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAACAGC..............................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AACAACAACAACAACAGCAGCAGCAGC.......................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CAGCAGCAACAACAGCA---G------------C------AG....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AACAACAACAACAACAACAGCAGC.............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................ACAA---------CAGCAGCAGCAACAACAGCA.......................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAACAA---------CAGCAGCAGCAAC..............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CAGCAACAGCAGCAGCA---------GCA...........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CAGCAGCAACAACAGCA---G------------C------AGC...................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................A------------------TCAGCAGCAGCAGCAA---------------CA............................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GCAACAACAA---------CAGCAGCAGCAAC..............................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ACAACAACAGCAGCAGCAGC.......................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AGCAACAGCAGCAGCA---------GCAACAACA.....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GCAACAACAGCAACAACAAC...............................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ACAA---------CAGCAGCAGCAACAACAGC........................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................G------------C------AGCAACA------------------TCAGCAGCAGC..................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGCAGCAACAGCAGCAGCA---------GCAACAAC......................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................AACAA---------CAGCAGCAGCAACAACAGCAAC.....................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA---------------CATCA---------................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GCAGCAACAGCAGCAGCA---------GCAACA........................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CAACAACAACAACAACAGC................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAACAAC.................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AGCAGCAGCA---------GCAACAACAA---------...........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCA---G------------C------AGCAACA------------------.............................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAACAA---------CAGCAGCAGCAACAAC...........................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAACAGCA---..........................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CAACAGCAGCAGCAGCAACAACAGCA---..........................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAACAA---------CAGCAGCAGCAACAAC...........................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CAACAGCAGCAGCAGCAACAACA................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACAACAACAACAACAGCAGCAGCAGC.......................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGCAGCAACAACAGCAACAACAA................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CAGCAGCAACAGCAGCAGCA---------..............................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACAGCAGCAGCA---------GCAACAACAA---------CAGC.......................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AACAACAACAACAGCAGCAGCAGCA......................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GCAGCAGCA---------GCAACAACAA---------CAGCAGCA...................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAAC....................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AGCAGCAACAACAGCA---G------------C------AGCA..................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................A---------GCAACAACAA---------CAGCAGCAGCAACA.............................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................A---G------------C------AGCAACA------------------TCAGCAGCA....................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AACAACAA---------CAGCAGCAGCA................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CAACAGCAGCAGCA---------GCAACA........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CAACAGCAGCAGCA---------GCAACAACAA---------CAGC.......................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAACAA---------CAGCAGCAGCAACA.............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AACAGCAACAACAACAACA...........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AGCAGCAACAACAGCA---G------------C------AGCAA.................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGCAGCA---------GCAACAACAA---------CAGCAGCA...................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AGCAACA------------------TCAGCAGCAGCAGC...............................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................C------AGCAACA------------------TCAGCAGCAGCAGT...............................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CAACAGCA---G------------C------AGCAACA------------------TC...........................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................A---------GCAACAACAA---------CAGCAGCAGCAACAAC...........................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AACAACAACAGCAGCAGCA.........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ACA------------------TCAGCAGCAGCAGCAA---------------C.............................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CAACAACAACAACAACAGCAGCAGCAGCA......................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAACA................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AACAACAACAACAGCAGCAGCAGCAAC....................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CAACAACAGCAGCAGCAGC.......................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGCGAATCGATATATTCAGCAATTCCGGGAAATATTTACTGAAGAGGGACGCAAGGCTGTTAAAATCACGCACCTTATACCCGGACATGTGCCAATTGTTACCCACACTGGACTTACAAATGAACAACGATTGTTGTTGCAGCAGCAGCAGCAGCAACAACAACAGCAACAGCA------------GCAGCAGCA---------------------------------------------ACAACAACA---G------------C------AACAAC---------------------------------------------------ATCA---------GCAGCAACAACAA------------CAGCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................GAACAACGATTGTTGTTGCAGCAGC....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.........................................................................................................CACTGGACTTACAAATGAACAACGA....................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................AGCA---------------------------------------------ACAACAACA---G------------C------AACAAC---------------------------------------------------ATCA---------GC..............................	27	5	0.20	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAA------------CAGCA..	18	20	0.20	4	1	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................ATCA---------GCAGCAACAACAA------------CAGCAGC	24	6	0.17	1	0	0	0	0	1	0
...............................................................................................................................................................ACAACAGCAACAGCA------------GCAGC.......................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
...........................................................................................................................................................................................CAGCAGCA---------------------------------------------ACAACAACA---G------------C------AACA..................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CA---------GCAGCAACAACAA------------CAGCAG.	21	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................ACAACAACAGCAACAGCA------------GCAGCAGCA---------------------------------------------......................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................TCA---------GCAGCAACAACAA------------CAG....	19	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................AACAACAGCAACAGCA------------GCAGCAGC....................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................ACAGCA------------GCAGCAGCA---------------------------------------------ACAACAACA---G------------C------......................................................................................................	26	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................AGCAGCAGCAGCAACAACAACAGCAAC............................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................ACAGCAACAGCA------------GCAGCAGCA---------------------------------------------AC....................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................CAACAACAACAGCAACAGCA------------GCA.........................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A---------GCAGCAACAACAA------------CAGCA..	19	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................GCAGCAGCA---------------------------------------------ACAACAACA---G------------C------A.....................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................GCA---------------------------------------------ACAACAACA---G------------C------AACAAC---------------------------------------------------.............................................	20	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................CAGCAACAACAACAGCAAC............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................CAACAACAGCAACAGCA------------GCAGCAGC....................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................AGCA------------GCAGCAGCA---------------------------------------------ACAACAACA---G------------C------AAC...................................................................................................	27	20	0.05	1	0	0	0	0	1	0

droGri2

TGCGAATCGCTATATTCAGCAATTCCGCGAGATATTCACTGAGGAGGGACGCAAGGCTGTTAAAATTACGCATCTGATACCTGGACATGTGCCAATTGTTACCCACACTGGACTAACCAATGAGCAGCGATTGCTATTGCAGCAGCAACAGCAACAACAACAGCAGCAACAACA------------GCAGCAGCAACA------------------------------------------ACAACAGCA---G------------C------AGCAG------------------------------------------------------------------CAGCAACGACAAGTCCAGTTTACTCAGCAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................GCAGCAGCAACA------------------------------------------ACAACAGCA---G------------C------A.....................................................................................................	24	20	0.05	1	1	0
.........................................................................................................................................................................CAACA------------GCAGCAGCAACA------------------------------------------ACA...................................................................................................................................	20	20	0.05	1	1	0
.........................................................................................................................................................ACAACAACAGCAGCAACAACA------------GCAGCAG.....................................................................................................................................................................................	28	20	0.05	1	1	0
...................................................................................................................................................ACAGCAACAACAACAGCAGC...............................................................................................................................................................................................................	20	20	0.05	1	1	0
.................................................................................................................................................................................................CAACA------------------------------------------ACAACAGCA---G------------C------AGCA..................................................................................................	20	20	0.05	1	0	1

dse_444

scaffold_0:5674255-5674405 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.4	-17.2	-17.1