dse_412

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAGCAACAGCAACGATCGCAAGTCGCGACACGAGCAAAGCGAACGGAAAGGTGTGCGGACCAAGGGGCGGGGGAGCGAAGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACCAACAACAACGGCAACCGGCCCGTTTGGAGCAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGAACGACGAGCGGCGAACGAGCGTCGACGAAGTGGCGACA ************************************************((((((...(((((((((.((....((....((..((((.....)))).)).....((....))..............))....)).)))).)))))....))))))........((((.........))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	V113 male body	M054 female body	V114 embryo
..............................................................................................................................................................................................................ACAGCGAACGACGAGCGGCGAACGAGC..................	27	0	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................CGGCGAACGAGCGTCGACGAAGTGGCGAC.	29	0	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................AACGACGAGCGGCGAACGAGCGT................	23	0	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................CAGCGAACGACGAGCGGCGAACGAG...................	25	0	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................AGCGAACGACGAGCGGCGAACG.....................	22	0	1	1.00	1	1	0	0	0
..........GACGATCTCAAGTCGGGACA.............................................................................................................................................................................................................................	20	3	5	0.20	1	0	0	1	0
...........................................................................................................................................................................................................TCAGCATCGAACGACGACCG............................	20	3	6	0.17	1	0	1	0	0
........................................GAAGAGAAAGGTGTACGGAC...............................................................................................................................................................................................	20	3	7	0.14	1	0	1	0	0
........................................................................................................AAGCAGCAGCAACACTAACGAC.............................................................................................................................	22	3	20	0.05	1	0	0	1	0
.........................................................................................................AGCAGCAGCAACACTAACGAC.............................................................................................................................	21	2	20	0.05	1	0	0	1	0
.......................................................................................................................................................................................................................GACGAGTGGCGAACGGGT..................	18	3	20	0.05	1	0	1	0	0
...............................GAGCAAAGCGAACTAAAA..........................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	1

GTCGTTGTCGTTGCTAGCGTTCAGCGCTGTGCTCGTTTCGCTTGCCTTTCCACACGCCTGGTTCCCCGCCCCCTCGCTTCTCGTTCACTGCTTGAATGCCGGTTGTCGTCGTCGTTGTGGTTGTTGTTGCCGTTGGCCGGGCAAACCTCGTCGCGCGTACGGTGTGTGTCAAATTTATACACTTTAATCATGTTTAGCACTAAAGTTGTCGCTTGCTGCTCGCCGCTTGCTCGCAGCTGCTTCACCGCTGT ************************************************((((((...(((((((((.((....((....((..((((.....)))).)).....((....))..............))....)).)))).)))))....))))))........((((.........))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	V115 head	M054 female body
................................................................................................................................................................................................................TCGCTTGCTGCTCTAAGCTTG......................	21	3	1	2.00	2	2	0	0
.................................................................................................................................................................................................................CGCTTGCTGCTCTAAGCTTG......................	20	3	3	0.33	1	1	0	0
............................................................................CTTCGCGTTCACTACTTG.............................................................................................................................................................	18	2	9	0.11	1	0	1	0
......................................................................................ACCGCTTGTATGCGGGTTG..................................................................................................................................................	19	3	20	0.05	1	0	0	1
....................................................................................................GGTTTTGGTCGTCCTTGTGG...................................................................................................................................	20	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_0:3501899-3502149 -	dse_412	CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA-------AGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACC------A------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--
droSim2	3l:11021659-11021909 -		CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA-------AGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACC------A------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--
dm3	chr3L:11288851-11289101 -		CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGTGGACCA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACC------A------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGACA--
droEre2	scaffold_4784:11292109-11292356 -		CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAA---------CA------------------------------------------------ACAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--
droYak3	3L:11323073-11323323 -		CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGGCCA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAAC------A------------------------------------------------ACAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--
droEug1	scf7180000409711:3169000-3169257 -		CAGCAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCTGGCCA-------GAG-------------------------------------------------------AA------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAAAGCAACAACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGAC---
droBia1	scf7180000302193:309169-309426 +		CAGCAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAGCG---------------CAAAGGTGTGCGGGCCA-------AGCGGC-------------------------------------------G------CGGG------AGCGAGGG----------GCAGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAA---------CA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGCCGACGAAGTGGCGACA--
droTak1	scf7180000415681:177974-178229 -		CAACAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGGCCA-------AGAGGC-------------------------------------------G------GGGC------TGCGGGG-----------GTAGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAA---------CA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGAC---
droEle1	scf7180000490564:2212853-2213106 -		CAGCAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA------AGGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGCA---ACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGAC---
droRho1	scf7180000780024:73753-74000 +		CA------GCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA------AGGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGCA---ACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGAC---
droFic1	scf7180000454113:3423735-3423986 +		CA------GCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG-----C---------AAAAGGTGTACGAGCCA------GGGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGGAACAACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAA------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGAC---
droKik1	scf7180000302391:1563831-1564100 +		-----GCAGCAACGATCGC-AACTCGCGACACGAGCAAGGCGAACG---------------GAAAGGTGTGCGGGTTA-------TG----A------------------------------------------GCGGCAACGGG------AGCGGGGG------------AGCA--AAAGCAAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACACCAATA------------------------------------------------ACAGCAACAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AA------CGTCGACGAAGTGGCGACAAA
droAna3	scaffold_13337:5573441-5573709 -		CAGCAGCAGCAACGATCGC-AACTCGCGACACGAGCAAATCGA-------------------AAAGGTGTGCTGCTGC-------TG----A------------------------------------------GTG------GT------GGCGGGGG------------AGCA--------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACAACA---------------------------ACAACA---ACAACA------ATAATAACAACAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGACA--
droBip1	scf7180000396371:894979-895246 -		CAGCAACAGCAACGATCGCCAAGTCGCGACACGAGCAAATCGAA------------------AAAGGTGTGCTGCTTA-------GTG-------------------------------------------------------GT------AGCGGGGG------------AGCA--------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACAACA---------------------------ACAAGA---ACAACA------ACAACAGAAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGACA--
dp5	XR_group6:10417893-10418227 +		CAGCAGCAGCAGCGATCGC-AACTCGCGACACGAGCGAGGC-AACAACAAGCACAAGGTTGGAAAGGTGTGTG---CG-------------AGAGAGTGTGTGGTGAGAAGAGTGGAGAGGGAGAGT-GC-TTTGCGGTAGTGGGAGGAGGGGCGGAGG------------AGCG--A----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCGGCA---------------------------AC--------------------CAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGCCGAACGCCGA------CGACGACGAAGCGGCGACA--
droPer2	scaffold_20:369831-370166 +		CAGCAGCAGCAGCGATCGC-AACTCGCGACACGAGCGAGGC-AACAACAAGCACAAGGTTGGAAAGGTGTGTG---CG-------------AGAGAGTGTGTGGTGAGAAGAGTGGAGAGGGAGAGT-GC-TTTGCGGTAGTGGGAGGAGGGGCGGAGG------------AGCG--A----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCGGCA---------------------------AC--------------------CAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGAAACGACGAGCGCCGAACGCCGA------CGACGACGAAGCGGCGACA--
droWil2	scf2_1100000004511:1682375-1682722 +		CAACAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAACGAC----------AAGGTTGGCAAGGTGTGAGT-CCG-------------AGAGGGGG--CGGTAGGCG--GTGGC-------GGTGGCGTTGGCGATAGCGAG------GGCGGGGGGCGAG--CGGTGAGCC--A-----CAAGTAAGTGACGAACTTACGGC-AGCAGCGGCA------------------------------------------------------------------------GCAACTGGTCC----------GTATGGAGGGGGGAGCTGCTGCTGCTGGTGCTGTTGCTGTTGCTGCTGCTGTTGTTGGCGAGCAGAGTCAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGA-CGACGA-CG--AGGAGAGACGACGACGAC--GGCGACG--
droVir3	scaffold_13049:23653388-23653635 +		-------------------------------------------------------------GGAAGGTGTTTGTAGCG------TAAG---------------------------------------------------------------GGCGGGGG-CGTG--CGGCGAGCAC-A-----AAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCGGCAGCAGCAGCA---------GCAACAACAA---CAACAACAACA---GCAACAACAACAGCAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGAACG---------------ACGAAGCGGCGA-A--
droMoj3	scaffold_6680:18263979-18264231 +	dmo_2527	-------------------------------------------------------------GGAAGGTGTTTGTAGCG-------GTG---------------------------------------------------------------GGCGGGGG-CGTG--AGGCGAGCA--T----AAAACCAAGTGACGGACTTACGGCCAACAGCAGCAGCGGCAGCAGCAACAATAACAGCAGCAGCAGCAATAACAACAACAGCA---GCAACA------ACAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGAACG---------------ACGAAGCGGCGA-A--
droGri2	scaffold_15110:14016477-14016742 -		CAACAACAGCAGCA-----------------------------------------AGGTT-GGAAGGTGTTTAAGGCTGGGGGAGGGG---------------------------------------------------------------GGCGGGGG-CGTGTTGGGCGAGCACAA----AAAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCCGCAGCAACAACA------------------A---CAACAACAACAGCAGTAGCA------ACAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAACGACGAACG---------------ACGAAGCGGCGAAA--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA-------AGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACC------A------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGA-ACGACGAGCGGCGAACG--AG------C....................	27	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGAACG--AG------CGTCGACGAAGTGGCGAC...	29	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACGACGAGCGGCGAACG--AG------CGT..................	23	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGA-ACGACGAGCGGCGAACG--AG------.....................	25	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGA-ACGACGAGCGGCGAACG--.............................	22	1	1.00	1	0	0	0	1

droSim2

CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA-------AGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACC------A------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AG------CGTCGACGAAGTGGC......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGCGGCGAACG--AG------CGG..................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGCGGCGAACG--AG------CGT..................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGGCGAACG--AG------CGT..................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGGCGAACG--A............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAATTAGTACAAATCGTGATTT..........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

dm3

CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGTGGACCA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACACC------A------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGCGACGAACG--AG------.....................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................CGC-AAGTCGCGACACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACAGCGA-ACGACGAGCGAC....................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACAGCGA-ACGACGA.........................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CGAACTTACGGCCAACAGCAGCA..................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGCGACGAACG--AG------.....................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGCGACGAACG--AG------CG...................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGCGACGAACG--AG------C....................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CGAACTTACGGCCAACAGCAGCAGCAA..............................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCGA-ACGACGAGCG......................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................AAAGCGAACG---------------GAAAGGTGTGTGGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GC-AAGTCGCGACACGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................CA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGGCCAACAGCAGCAGCAACC............................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CAGCAGCAGCAACACC------A------------------------------------------------ACAACA.............................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAA---------CA------------------------------------------------ACAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........ACGATCGC-AAGTCGCGACACGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	22.00	22	0	0	0	0	0	0	22

droYak3

CAGCAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGGCCA-------GGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAAC------A------------------------------------------------ACAACAACGGCAACCGGCCT----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCGA-ACGACGAGCGGC....................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGGCGAACG--AG------C....................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACG--AG------CGTCGACGAAGTGGC......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGCGGCGAACG--AG------CG...................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGA-ACGACGAGCGGCGAAC................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGCGGCGAACG--AG------CGT..................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGA-ACGACGAGCGGCGAACG--.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGCAGCAGCAAC------A------------------------------------------------ACAACAACGG.........................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................AGCAGCAGCAGCAAC------A------------------------------------------------ACAAC..............................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0

droEug1

CAGCAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCTGGCCA-------GAG-------------------------------------------------------AA------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAAAAGCAACAACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGAC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGCAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAGCG---------------CAAAGGTGTGCGGGCCA-------AGCGGC-------------------------------------------G------CGGG------AGCGAGGG----------GCAGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAA---------CA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGCCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGGCCA-------AGAGGC-------------------------------------------G------GGGC------TGCGGGG-----------GTAGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAA---------CA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGAC---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGCAGCAGCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA------AGGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGCA---ACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGGCGAACG--AG------CGTCGACGAAGTGGCGAC---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA------GCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG---------------GAAAGGTGTGCGGACCA------AGGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGCA---ACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGAC---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA------GCAACGATCGC-AAGTCGCGACACGAGCAAAGCGAACG-----C---------AAAAGGTGTACGAGCCA------GGGG---------------------------------------------------------------GGCGGGGG------------AGCG--A-----AGAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAGCAGGAACAACA------------------------------------------------ACAACAACGGCAACCGGCCC----------GTTTGGAA------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGAC---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----GCAGCAACGATCGC-AACTCGCGACACGAGCAAGGCGAACG---------------GAAAGGTGTGCGGGTTA-------TG----A------------------------------------------GCGGCAACGGG------AGCGGGGG------------AGCA--AAAGCAAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACACCAATA------------------------------------------------ACAGCAACAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AA------CGTCGACGAAGTGGCGACAAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGCAGCAGCAACGATCGC-AACTCGCGACACGAGCAAATCGA-------------------AAAGGTGTGCTGCTGC-------TG----A------------------------------------------GTG------GT------GGCGGGGG------------AGCA--------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACAACA---------------------------ACAACA---ACAACA------ATAATAACAACAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACG--AG------CGTCGACGAAGTG........	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGCGACGAACG--AG------CG...................	20	1	1.00	1	0	0	0	0	1	0
........GCAACGATCGC-AACTCGCGACACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGA-ACGACGAGCGACGAACG--.............................	26	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ACGACGAGCGACGAACG--AG------C....................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................GCAACAACAACAACA---------------------------ACAAC...................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................CA---------------------------ACAACA---ACAACA------ATAATAAC...........................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0
................................................................................................................................................................................................................................CAACAACA---------------------------ACAACA---ACAACA------ATA................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................ACA---ACAACA------ATAATAACAAC........................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

CAGCAACAGCAACGATCGCCAAGTCGCGACACGAGCAAATCGAA------------------AAAGGTGTGCTGCTTA-------GTG-------------------------------------------------------GT------AGCGGGGG------------AGCA--------GAAGCAAGTGACGAACTTACGGCCAACAGCAGCAGCAACAACAACAACA---------------------------ACAAGA---ACAACA------ACAACAGAAGCAACCGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGACGAACG--AG------CGTCGACGAAGTGGCGACA--	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGCAGCAGCAGCGATCGC-AACTCGCGACACGAGCGAGGC-AACAACAAGCACAAGGTTGGAAAGGTGTGTG---CG-------------AGAGAGTGTGTGGTGAGAAGAGTGGAGAGGGAGAGT-GC-TTTGCGGTAGTGGGAGGAGGGGCGGAGG------------AGCG--A----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCGGCA---------------------------AC--------------------CAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAGCGCCGAACGCCGA------CGACGACGAAGCGGCGACA--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............GATCGC-AACTCGCGACACGAGCGAGGC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AACAGCAGCAACAGCGGC..........................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCAACAGCGGCAGCGGCA---------------------------........................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGCAGCAGCAGCGATCGC-AACTCGCGACACGAGCGAGGC-AACAACAAGCACAAGGTTGGAAAGGTGTGTG---CG-------------AGAGAGTGTGTGGTGAGAAGAGTGGAGAGGGAGAGT-GC-TTTGCGGTAGTGGGAGGAGGGGCGGAGG------------AGCG--A----AAAAGCAAGTGACGAACTTACGGCCAACAGCAGCAACAGCGGCAGCGGCA---------------------------AC--------------------CAGCAAC--CAACCGGCCCCGCTGCCGCTGCTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGAAACGACGAGCGCCGAACGCCGA------CGACGACGAAGCGGCGACA--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CAACAACAGCAACGATCGC-AAGTCGCGACACGAGCAAAACGAC----------AAGGTTGGCAAGGTGTGAGT-CCG-------------AGAGGGGG--CGGTAGGCG--GTGGC-------GGTGGCGTTGGCGATAGCGAG------GGCGGGGGGCGAG--CGGTGAGCC--A-----CAAGTAAGTGACGAACTTACGGC-AGCAGCGGCA------------------------------------------------------------------------GCAACTGGTCC----------GTATGGAGGGGGGAGCTGCTGCTGCTGGTGCTGTTGCTGTTGCTGCTGCTGTTGTTGGCGAGCAGAGTCAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGA-CGACGA-CG--AGGAGAGACGACGACGAC--GGCGACG--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAACAGCGA-ACGAC...........................................	19	1	2.00	2	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGCTGCTGTTG...............................................................................................................................	20	20	1.40	28	0	28	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAACAGCGA-ACGAC...........................................	18	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGTTGCTGTTGCTGCTGCTGTTGTTG............................................................................................................................	26	20	0.20	4	0	4	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGTTGCTGCTGCTGTTG...............................................................................................................................	26	20	0.20	4	0	4	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCTGTTGCTGTTGCTGCTGCTGTTG...............................................................................................................................	25	20	0.15	3	0	3	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTGCTGCTGTTGT..............................................................................................................................	23	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGGTGCTGTT..................................................................................................................................................	19	18	0.06	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGTTGCTGCTGC....................................................................................................................................	21	20	0.05	1	0	1	0	0	0

droVir3

-------------------------------------------------------------GGAAGGTGTTTGTAGCG------TAAG---------------------------------------------------------------GGCGGGGG-CGTG--CGGCGAGCAC-A-----AAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCGGCAGCAGCAGCA---------GCAACAACAA---CAACAACAACA---GCAACAACAACAGCAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGAACG---------------ACGAAGCGGCGA-A--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGACGACGAACG---------------ACGAAGC.........	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACG---------------ACGAAGCGGC......	18	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCGA-ACGACCGACGAC....................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACAGCGA-ACGACCGACGA.....................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATATGTGAAATTAGTACA.....................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGA-ACGACCGACGA.....................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AGCAACAACAGCAACTGGCCC----------.....................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAACG---------------ACGAAGCGGCG.....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCGACGACGAACG---------------ACGAA...........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCGGCAGCAGCAGCA---------GCAACAAC..................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AACAGCAGCAGCGGCAGCAGCAGCA---------G.........................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AACA---GCAACAACAACAGCAACA.............................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGCA---------GCAACAACAA---CAACAACAACA---GC.............................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCAGCAGCA---------GCAACAAC..................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACAA---CAACAACAACA---GCAACAACAAC....................................................................................................................................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCAGCAGCGGCAGCAGCAGCA---------GCAA......................................................................................................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................AACAA---CAACAACAACA---GC.............................................................................................................................................................................................................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCAGCAGCA---------GCAACAACAA---CAACA........................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AACAACAACA---GCAACAACAACAGCA................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAAC.....................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAGCAGCAGCA---------GCAACAACA.................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................ACAACAACA---GCAACAACAAC....................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACAACAACAGCAACAACA..........................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GCGGCAGCAGCAGCA---------GCAAC.....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AA---CAACAACAACA---GCAACA.........................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AACAA---CAACAACAACA---GCAACAACAA.....................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAGCAGCAGCA---------GCAACAAC..................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................ACAACAACA---GCAACAACAACAGCAA...............................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGCAGCGGCAGCAGCAGCA---------..........................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGCAGCAGCAGCA---------GCAACA....................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................ACA---GCAACAACAACAGCAA...............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCAGCA---------GCAACAACAA---CAAC.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AACAACAACA---GCAACAACAAC....................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AACAACAGCAACAACAGCAAC.....................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AGCAGCAGCGGCAGCAGCAGC....................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AACAACA---GCAACAACAACAGC.................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................A---GCAACAACAACAGCAACAACAGCAAC.....................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................A---------GCAACAACAA---CAACAACAACA---GCAAC..........................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCAGCA---------GCAACAACAA---CAACAACAA....................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................ACAA---CAACAACAACA---GCAACA.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGCAGCGGCAGCAGCAGCA---------GCA.......................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CAACA---GCAACAACAACAGC.................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AACAACAACA---GCAACAACAACAGCAAC..............................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CA---------GCAACAACAA---CAACAACAAC...................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CAGCAGCAGCGGCAGCAGCA......................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................A---CAACAACAACA---GCAACAAC.......................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-------------------------------------------------------------GGAAGGTGTTTGTAGCG-------GTG---------------------------------------------------------------GGCGGGGG-CGTG--AGGCGAGCA--T----AAAACCAAGTGACGGACTTACGGCCAACAGCAGCAGCGGCAGCAGCAACAATAACAGCAGCAGCAGCAATAACAACAACAGCA---GCAACA------ACAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACCGACGACGAACG---------------ACGAAGCGGCGA-A--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................GCAGCAATAACAACAACAGC...................................................................................................................................................................................................................................	20	6	0.17	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................CAACA------ACAACAACAGCAACTG...................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................AGCAGCGGCAGCAGCAACA...................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................A---GCAACA------ACAACAACAGCAACT....................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCAACA------ACAACAACAGCAACT....................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................CAACAGCAGCAGCGGCAGCAG........................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

CAACAACAGCAGCA-----------------------------------------AGGTT-GGAAGGTGTTTAAGGCTGGGGGAGGGG---------------------------------------------------------------GGCGGGGG-CGTGTTGGGCGAGCACAA----AAAACCAAGTGACGAACTTACGGCCAACAGCAGCAGCCGCAGCAACAACA------------------A---CAACAACAACAGCAGTAGCA------ACAACAACAGCAACTGGCCC----------GTTTGGAG------------------------------------------------------------CAGCGCGCATGCCACACACAGTTTAAATATGTGAAATTAGTACAAATCGTGATTTCAACAGCGA-ACGACGAACGACGAACG---------------ACGAAGCGGCGAAA--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................................................................................................................ACAACAGCAGTAGCA------ACAACA.............................................................................................................................................................................................................	21	8	0.13	1	1	0
...................................................................................................................................................................................................................GCAGCAGCCGCAGCAACAACA------------------.................................................................................................................................................................................................................................................	21	12	0.08	1	1	0

dse_412

scaffold_0:3501949-3502099 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads