ID:

dse_357

 Coordinate:

scaffold_5:3718932-3719019 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.8 -33.7 -33.4

Flybase annnotation

Antisense to intron [Dsec\GM18007-in]; utr5 [utr5_plus_810]; utr5 [utr5_plus_811]; utr5 [utr5_plus_809]

No Repeatable elements found

Sense Strand Reads

ACATGGTATCAAATCTGATTCCCCCAAAGGAACCCGTAATGTACTCTTTATCAAGGCCCGAGTTACCTTTGATCACCAGTAAGTGAGATTGTTTCTGATACGATTTCGTTTTCTGGCAATCAAAGGAACTCGACTCGACTTGAATCTACAACTACCTCGATGGGGCATTCAGGCTATAAGGTAGAGAA

****************************************************......((((((.((((((((..((((.((((((((((((.......)))))))))))).))))..)))))))))))))).........*********************************************** 		Read size # Mismatch Hit Count Total Norm Total V113

male body		 V114

embryo

 V115

head

 M054

female body
........................................................................................................TTCGTTTTCTGGCAATCAAAGG.............................................................. 22 0 1 372.00 372 246 67 30 29
...................................................................TTTGATCACCAGTAAGTGAGAT................................................................................................... 22 0 1 122.00 122 90 25 6 1
........................................................................................................TTCGTTTTCTGGCAATCAAAG............................................................... 21 0 1 43.00 43 33 3 4 3
...................................................................TTTGATCACCAGTAAGTGAGA.................................................................................................... 21 0 1 22.00 22 19 2 0 1
........................................................................................................TTCGTTTTCTGGCAATCAAAGGT............................................................. 23 1 1 20.00 20 18 0 0 2
........................................................................................................TTCGTTTTCTGGCAATCAGAGG.............................................................. 22 1 1 4.00 4 4 0 0 0
........................................................................................................TTCGTTTTCTGGCAACCAAAGG.............................................................. 22 1 1 3.00 3 2 1 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAGT.............................................................. 22 1 1 2.00 2 2 0 0 0
...................................................................TTTGATCGCCAGTAAGTGAGAT................................................................................................... 22 1 1 2.00 2 1 0 1 0
...................................................................TTTGGTCACCAGTAAGTGAGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAA............................................................... 21 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAGC.............................................................. 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAT............................................................... 21 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAGA.............................................................. 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATTAAAGG.............................................................. 22 1 1 1.00 1 0 1 0 0
........................................................................................................TTCGTTTTCTGGCAATCAACGG.............................................................. 22 1 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTAAGTGAGATA.................................................................................................. 23 1 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTAAGTGCGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTAAGTGAGATT.................................................................................................. 23 0 1 1.00 1 1 0 0 0
...................................................................TTTTATCACCAGTAAGTGAGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0
........................................................................................................TCCGTTTTCTGGCAATCAAAGG.............................................................. 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTACTGGCAATCAAAGG.............................................................. 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAGGA............................................................. 23 0 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCGGTCAAAGG.............................................................. 22 2 1 1.00 1 0 0 1 0
.........................................................................................................TCGTTTTCTGGCAATCAAAGG.............................................................. 21 0 1 1.00 1 0 0 0 1
...................................................................TTTGATCACCAGTAATTGAGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTAAGTGGGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0
....................................................................TTGATCACCAGTAAGTGAGAT................................................................................................... 21 0 1 1.00 1 0 1 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAA................................................................ 20 0 1 1.00 1 1 0 0 0
...............................................TTATCAAGGCCCGAGTTACC......................................................................................................................... 20 0 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTACGTGAGA.................................................................................................... 21 1 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTAAGTGCGA.................................................................................................... 21 1 1 1.00 1 1 0 0 0
...................................................................TTTGATCACCAGTAAGTGGGA.................................................................................................... 21 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCACAGG.............................................................. 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCAAAAG.............................................................. 22 1 1 1.00 1 1 0 0 0
...................................................................TTTGCTCACCAGTAAGTGAGA.................................................................................................... 21 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCATAG............................................................... 21 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAATCATAGG.............................................................. 22 1 1 1.00 1 1 0 0 0
........................................................................................................TTCGTTTTCTGGCAAACAAAGG.............................................................. 22 1 1 1.00 1 0 1 0 0
...................................................................TTTGATCGCCAGTGAGTGAGA.................................................................................................... 21 2 1 1.00 1 1 0 0 0
........................................................................................................CTCGTTTTCTGGCAATCAAAGG.............................................................. 22 1 2 0.50 1 0 1 0 0
..................................................................................GTGAGATTCTTCCTGATCC....................................................................................... 19 3 13 0.08 1 0 0 0 1

Anti-sense strand reads

TGTACCATAGTTTAGACTAAGGGGGTTTCCTTGGGCATTACATGAGAAATAGTTCCGGGCTCAATGGAAACTAGTGGTCATTCACTCTAACAAAGACTATGCTAAAGCAAAAGACCGTTAGTTTCCTTGAGCTGAGCTGAACTTAGATGTTGATGGAGCTACCCCGTAAGTCCGATATTCCATCTCTT

***********************************************......((((((.((((((((..((((.((((((((((((.......)))))))))))).))))..)))))))))))))).........**************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113

male body
.............................................................CAATGGGAACTAGTTGTCG............................................................................................................ 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_5:3718882-3719069 + dse_357 confident ACATGGTATCAAATCTGATTCCCCCAAAG--GAAC---------------C-----------CGTAATGT-----------ACTCTTTATC--A------------------AGGCCCGAGTTACCTTTGATCACCAGTAAGTGAGATTG--TTT-CTGA----TACGATTTCGTTTTCTGGCAATC-AAAGGAACTCGACTCG-A------CTTG--------------------AATCT------------ACAACTACCT-CG---------A-TGGGGCATTCAGGCTATAAGGTAGAGAA
droSim2 2l:5445894-5446081 + dsi-mir-961 Known_mirbase ACATGGTATCAAATCTGATTCCCCCAAAC--GAAC---------------C-----------CGTAATGT-----------GCTCGTTATC--A------------------TGGGCCGAGTTACCTTTGATCATCAGTAAGTGAGATTG--TTT-CTGA----TACGATTTCGTTTTCTGGCAATC-AAAGGAACTCGACTCG-A------CTTG--------------------AATCT------------ACAACTACCT-CG---------A-TGGGGCGCTCAGGCTATAAGGTAGAGAA
dm3 chr2L:5641141-5641327 + dme-mir-961 Known_mirbase ACATGGTATCAAATCAGATTCACCTAATA--GAAT---------------C-----------CGTAGTGA-----------GCTCGTTATC--A------------------AGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTG--TTT-CTGA----TACGGTTTCGTTTTCTGGCAATC-AAAAGAACTTGGACTCGA------CTTG--------------------AA--------------TTCAACTACTT-CG---------A-TGGGGCACTCAGGCTATAAGGTAGAGAA
droEre2 scaffold_4929:5729615-5729788 + der_35 confident ACGTGGCATCAATCCT-ATTCAACTGATG--GAAA----------------------------------------------CCTGAT--TC--A------------------TGGGTCGAGTTACCATTGATCACCGGTTACTGAGGTTG--TGC-CACA----TTCGGCTTCGTTTCCTGGCGATC-AAAAGAACTCGACTCG-G------CTCG--------------------AA--------------TCCCAGTACCT-CC---------T-TGGGGCACTCAAGCTATAAGGTAGAAAA
droYak3 2L:13551988-13552166 - dya_33 candidate-rescued ACGTGGTATCAAATCTGATTCAACCGAAG--GAAG---------------------------------AA---------AATCTAAT--TC--A------------------TGGGTCGAGTTACCATTGATCACCGGTTACTGAGGTTG--TTC-CTTC----TTTGGCTTCGTTTTCTGGCGATC-AAAAGAACTCGACTCG-A------CTCG--------------------AA--------------TCCAACCAACT-TC---------A-TGGGGCACACAAGCTATAAGGTAGAGAA
droEug1 scf7180000409063:317450-317642 + ACATGGCTTCAAATCTGATTCAACCAAGG--GGAC---------------T-----------TACAGTGT-----------GATA---AACAA------------CGATCTT-TGGCCGAGTTCTCTTTGATCACCGGTTACTGAGGTTG--TTA-CCAG----TCCGGCTTCGTTTTCTGGCGATC-AAACAAACTCGACTTC-AA--AA-CCCA--------------------AA--------------CCCAACTTCCT-CG---------C-CGGGGCACACAAGCTCTAAGGTAGAGAA
droBia1 scf7180000302422:3830688-3830876 + ACATGGTGTCAAATCTGAATTACCTGGAG--TGTG---------------CAATAGTGGTTTCACA----------------------AAAAG------------CAATTCG-GGGTCGAGTTCTCTTTGATCACCGGTTACTGATGTTG--TTTTCCGA----CGCGGCTTCGTTTTCTGGCGATC-AAACAAACTCGACCCA-AA--G------------------------------------------GCCAACCAACC-CG-----------TCGGGCACTCAAGCTATAAGGTAGAGAA
droTak1 scf7180000415871:385426-385614 + ACATGGCATTAAATCTGATTCAACTAAAG--GAAC---------------T-----------TGTAGTGA-----------GCCCACTATCAA------------CGATTCA-CGGCCGAGTTCTCTTTGATCACCGGTTACTGAGGTAC--TTT-TCGC----TTTTTCTTCGTTTTCTGGCGATC-AAATAAACTCGACTTA-AA--A------------------------------------------CCCAACCAACT-CG---------A-CGGGGCACCCAAGCTATAAGGTAGAGAA
droEle1 scf7180000490753:30334-30509 + ACATGGTATCAAATCTAATTCAACAAATG--AAAC--GCCAGTC------T-----------CATAGTGA----------------T------------------CATCCTT-GGGCAGAGTTCTCTTTGATCACCGGTTACTGAGGTTG--TTC-TCGC----TTCGGCTTCGTTTTCTGGAGATC-AAATAAACTCGAA---------------------------------------------------CCCAATTACCT--------------CGGGGCACCCAAGCTATAAGGTAGAGAA
droRho1 scf7180000778253:33807-33980 - ACATGGTATCAAATCTAATTCAACTGAAG--ACC---------------------------------TGA-----------GA---T------------------CGTCCTTAGAGCCGAGTTCTCTTTGATCACCGGTTACTGAGGTTG--TTC-TCGC----TCCGACTTCGTTTTCTGGCGATC-AAATAAACTCGGCTTT-GA--G------------------------------------------TTCAACTACCT-CC---------A-CGGGGCACTCAAGCTATAAGGTAGAGAA
droFic1 scf7180000453932:197514-197694 - ACATGGCATCAAATCTGATTCATCCGCGGAAGCTG-----------------------------T---GA-----------AC-----CAA--CGAA--------CGTCTCTGGGGTCGAGTTCTGTTTGATCACCGGTTACTGAGGTCC--TTT-CCAC----TCCGACTTCGTTTTCTGGCGATC-AAACAAACTCGGCTCG-GA--A------------------------------------------GCCATCC--CC-CC---------A-CTGGGCAGTCAAGCTATAAGGTAGAGAA
droKik1 scf7180000302389:430905-431095 - ACATGGCAGCAAAGCCAAGTCGACGGTGG---AAA---------------G-----------TGCAA---------------------CAC--TGAA--------GGCG---TCCGAGGAGTTGGCTTTGATCACCGGTAACTGAGGTCG--TCA-CGCC--CAATCGACTTCGTTTTCTGGCGATC-AAACAAACTCGTCTCG-GA--A--CTCCAA-----C------------ATCCT------------GGAACTCCCT-GC---------C-CAAGGCACTCAAGCTATAAGGTAGAGAA
droAna3 scaffold_12916:11084941-11085133 + dan_50 candidate-rescued ACATGGCATCAAATCTGTGTCAACGGCAGCAGGAC---------------T----------CCACAAAGGACTACAGGAAAG-----------------------CGACTTA-AGTCCGAGCACTATTTGATCACTGGTTACTGAGGTTG--TTT-TGTC----ATAAGCTTCGTTTTCTGGCGATC-AAATACGCTCGACTTT-GG--G------------------------------------------CCCAACCACCT-GG---------CCGAGGGCACTCAAGCTATAAGGTAGAGAA
droBip1 scf7180000396572:742690-742882 + ACATGGCATCAAATAAAAGTCATCGGCAGCTGGAC---------------T----------TCATCAAGTACTATTTTAGAG-----------------------CTACATA-AGTTCGAGTATTATTTGATCACTGGTTACTGAGGTTG--TGT-CTGC----ATCAGCTTCATTTTCTGGCTATC-AAATACACACGACTTT-GG--G------------------------------------------CCCAACCACCT-GG---------TCGGGGGCACCCAAGCTATAAGGTAGAGAA
dp5 4_group4:3182294-3182483 - dps-mir-2509 Known_mirbase ATATGGCAGCCACTAA-AGACAACCAGAG--GAG-----------------------------------A-----------GCTGTTTCGC--CGGA--------C-------AGTCAGAGTTTGATTTGATCTCTAGTTACTGGGCTTT--GAT-TCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGACTCG-AG--TGCCACA--------------------AA--------------TGCCACATGAT-GC-------AAA-TGGAGCAGTCGTGTTTTAAGGTACAGAC
droPer2 scaffold_10:2201225-2201414 - dpe_2504 candidate ATATGGCAGCCACTAA-AGACAACCAGAG--GAG-----------------------------------A-----------GCTGTTTCGC--CGGA--------C-------AGTCAGAGTTTGAGTTGATCTCTAGTTACTGGGCTTT--GAT-TCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGACTCG-AG--TGCCACA--------------------AA--------------TGCCACATGAT-GC-------AAA-TGGAGCAGTCGTGTTTTAAGGTACAGAC
droWil2 scf2_1100000004521:8625957-8626184 - dwi_125 candidate-rescued ACATGGCCCAAATGATAAATGA-C----------------AGTGACAATGAAAAAGAAAATACCA-A---------------------AACA--GAAATTGTGTGAAACTTG-AGTTTGAGTTTACATTGATCACTGGTTAGTGAGGTTCAAAGT-CAGA----CCCAACTTCGTTATCTGGCGATC-AAATAAACCTGGCTTA-CAAAAGCTATAATTGCTGAAATGGATACACGTT--------------TT---CTATTT-AA---------T-AAGGACCCTCAAGTTATAAGGTAGAGAA
droVir3 scaffold_12963:3615379-3615462 + dvi-mir-962 Known_mirbase -------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATTTTTCAGTGAAT-TAAACAACTCAATTTA-CA--C---ACA--------------------CA--------------CACA-CACATAAGA---------A-AGGGCGCCTCAAATTATAAGGTAGAGAA
droMoj3 scaffold_6500:14018362-14018389 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAGCGCTCAAGTTATAAGGTAGAGAT
droGri2 scaffold_15252:3147084-3147268 + ATTTGTCATAAGACTTCACATAACAAAAT--GTTGTTAGCAGCCACAT--C---------TCTGAATTGA-------------------AT--T------------GGA---TTCGTTTTACTTTCTTTTATTACTGA--AATG-AGTTG--T-----------------TCAGTTCTT---------------------TTAA-A------TTTC--------------------AGTCTACAAACTAAGAGCAGGTTACTT-TCATAACACACTCAAGAGCTCTCAGATTATAAGGTAGAGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
ACATGGTATCAAATCTGATTCCCCCAAAG--GAAC---------------C-----------CGTAATGT-----------ACTCTTTATC--A------------------AGGCCCGAGTTACCTTTGATCACCAGTAAGTGAGATTG--TTT-CTGA----TACGATTTCGTTTTCTGGCAATC-AAAGGAACTCGACTCG-A------CTTG--------------------AATCT------------ACAACTACCT-CG---------A-TGGGGCATTCAGGCTATAAGGTAGAGAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGG................................................................................................................221372.00372292466730
..............................................................................................................................TTTGATCACCAGTAAGTGAGAT.............................................................................................................................................................221122.00122190256
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAG.................................................................................................................21143.004333334
..............................................................................................................................TTTGATCACCAGTAAGTGAGA..............................................................................................................................................................21122.002211920
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGT...............................................................................................................23120.002021800
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGT................................................................................................................2212.0020200
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAA.................................................................................................................2111.0010100
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGC................................................................................................................2211.0010100
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAT.................................................................................................................2111.0010100
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGA................................................................................................................2211.0010100
..............................................................................................................................TTTGATCACCAGTAAGTGAGATA............................................................................................................................................................2311.0010100
..............................................................................................................................TTTGATCACCAGTAAGTGAGATT............................................................................................................................................................2311.0010100
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGA...............................................................................................................2311.0010100
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAGG................................................................................................................2111.0011000
...............................................................................................................................TTGATCACCAGTAAGTGAGAT.............................................................................................................................................................2111.0010010
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAA..................................................................................................................2011.0010100
......................................................................................TTATC--A------------------AGGCCCGAGTTACC...................................................................................................................................................................................2011.0010100
droSim2
ACATGGTATCAAATCTGATTCCCCCAAAC--GAAC---------------C-----------CGTAATGT-----------GCTCGTTATC--A------------------TGGGCCGAGTTACCTTTGATCATCAGTAAGTGAGATTG--TTT-CTGA----TACGATTTCGTTTTCTGGCAATC-AAAGGAACTCGACTCG-A------CTTG--------------------AATCT------------ACAACTACCT-CG---------A-TGGGGCGCTCAGGCTATAAGGTAGAGAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGG................................................................................................................221814.00814139348524943031604564010
..............................................................................................................................TTTGATCATCAGTAAGTGAGAT.............................................................................................................................................................221518.00518429761581332500533037000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAG.................................................................................................................211454.00454029202243201100100164000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AA...................................................................................................................191145.001450000140111000002000
..............................................................................................................................TTTGATCATCAGTAAGTGAGA..............................................................................................................................................................211139.00139478019012200010014000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-A....................................................................................................................181135.001350000131400000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAA..................................................................................................................201117.001170300871310020020000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGA...............................................................................................................23119.0019000040011000004000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGT...............................................................................................................23119.0019000000300010015000
..............................................................................................................................TTTGATCATCAGTAAGTGAG...............................................................................................................................................................20117.0017010014100001000000
..............................................................................................................................TTTGATCATCAGTAAGTGAGAC.............................................................................................................................................................2219.00918000000000000000
..............................................................................................................................TTTGATCATCAGTAAGTGAGG..............................................................................................................................................................2119.00909000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGTTT.............................................................................................................2517.00700000000000016000
..............................................................................................................................TTTGATCATCAGTAAGTGAGATT............................................................................................................................................................2317.00700003011000002000
..............................................................................................................................TTTGATCATCAGTAAGTGA................................................................................................................................................................1916.00604002000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGTT..............................................................................................................2416.00601000000000005000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGT................................................................................................................2215.00500000001000013000
..............................................................................................................................TTTGATCATCAGTAAGTGAGAA.............................................................................................................................................................2213.00300000000001002000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAGG................................................................................................................2113.00300030000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-.....................................................................................................................1713.00300000000003000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-ATT..................................................................................................................2022.50500000000000005000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AATT.................................................................................................................2122.00400000000000004000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGA................................................................................................................2212.00200000000000002000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAA.................................................................................................................2112.00201000000000001000
..............................................................................................................................TTTGATCATCAGTAAGTG.................................................................................................................................................................1812.00200002000000000000
.............................................................................................................................................................................GTTTTCTGGCAATC-AAAGGAAC.............................................................................................................2212.00201000000000001000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGAA..............................................................................................................2412.00200000001000001000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGTT...............................................................................................................2312.00200000000000002000
..........................................................................................................................................................................TTCGTTTTCTGGCAAT.......................................................................................................................1611.00100000000001000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAGGAT..............................................................................................................2311.00100000001000000000
.................................................................................................................................................................................TCTGGCAATC-AAAGGAACTCG..........................................................................................................2111.00100000000000001000
..............................................................................................................................TTTGATCATCAGTAAGTGAGATA............................................................................................................................................................2311.00100000000000001000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGTTT..............................................................................................................2411.00100000000000001000
..............................................................................................................................TTTGATCATCAGTAAGTGAGATAA--.........................................................................................................................................................2411.00100000000000001000
......................................................................................................................................................................................................................................................................................GGGGCGCTCAGGCTATAAGGTA.....2211.00100001000000000000
.................................................................................................................................................................................TCTGGCAATC-AAAGGAACTCGACTCG-A------.............................................................................................2711.00100000000000001000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAT..................................................................................................................2011.00101000000000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAGGAA..............................................................................................................2311.00100000001000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAC..................................................................................................................2011.00100000010000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGC................................................................................................................2211.00100000000001000000
.......................................................................................TATC--A------------------TGGGCCGAGTTACC...................................................................................................................................................................................1911.00100001000000000000
..................................................................................................................................ATCATCAGTAAGTGAGAT.............................................................................................................................................................1811.00100000000001000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAGGC...............................................................................................................2311.00100000000000001000
.............................................................................................................................................................................GTTTTCTGGCAATC-AAAGG................................................................................................................1911.00100000000001000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAA..................................................................................................................1911.00100001000000000000
..............................................................................................................................................................................TTTTCTGGCAATC-AAAGG................................................................................................................1811.00100000000001000000
...............................................................................................................................TTGATCATCAGTAAGTGAGAT.............................................................................................................................................................2111.00100001000000000000
...............................................................................................................................................................................TTTCTGGCAATC-AAAGG................................................................................................................1711.00100000000001000000
..............................................................................................................................TTTGATCATCAGTAAGA..................................................................................................................................................................1711.00100000000000001000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAGGA...............................................................................................................2211.00100000001000000000
...............................................................................................................................TTGATCATCAGTAAGTGAG...............................................................................................................................................................1911.00100001000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-ATTT.................................................................................................................21130.54700000000000007000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AATTT................................................................................................................2290.22200000000000002000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-ATTA.................................................................................................................2150.20100000000000001000
dm3
ACATGGTATCAAATCAGATTCACCTAATA--GAAT---------------C-----------CGTAGTGA-----------GCTCGTTATC--A------------------AGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTG--TTT-CTGA----TACGGTTTCGTTTTCTGGCAATC-AAAAGAACTTGGACTCGA------CTTG--------------------AA--------------TTCAACTACTT-CG---------A-TGGGGCACTCAGGCTATAAGGTAGAGAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..............................................................................................................................TTTGATCACCAGTAACTGAGAT.............................................................................................................................................................22129599.002959900000000000300000000420172001000000001235816101215207141639163418192915000100000000000000000004010000000000010122013000110100000001900000000100100001300000002302110010354835172482028192700000101225171305001171605030001419238252572588123462206326440320100024330040001242012991625062389128510016841771001000057060010011901760000200010100010012001307072012831173177401000712701372691105358437719182960786109400230410101121005000138115122829374439404720
..............................................................................................................................TTTGATCACCAGTAACTGAGA..............................................................................................................................................................2113974.00397400000000000200000000000940010000000002212105010321233000000000000000000000000001000000000000001008002001000002000000000000000000000001000000000000192647244300000006003110100120300000000603321882030003210655000001330000000201940213882840132103510011000000120000190016000001000000000000200974614426211010005104002710221754128422112178000137000000000003038814267103100
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAG................................................................................................................2211436.0014360000000000030000000000010000000111110013010075011333145000000000000000000000000201200000000111022500390002040000030230023000000000000000010000001000001692232001210000000000000010002111010051200000137616123001140542000000200000010014261224183710432136242022000002000000005004000000000000000000000637330314000000100004000040413561012000640000000000031100131600110
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAA..................................................................................................................201483.004830000000000010000000001039000000000000200001000101101000000000000000000000000012100000000000000300900000300100102000000000000000000000000000000000002011101020000000000000000001110000000000079457000081025600000000000000003502131011115300000000000000000300500000000000000000000032401032000000110000000001018300500012000000000000030000100000
..............................................................................................................................TTTGATCACCAGTAACTGAG...............................................................................................................................................................201388.00388000000000000000000001001100000000000000000110000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010301400000000000000000000001000000200010350167000025028000000100000000002504101210110000000000001000000000000000000000000000002701141000000000100510001011277121600031000000000002250210800000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAA.................................................................................................................211359.003590000000000000000000000026000000000000001002110100300000000000000000000000000002100000000000010621700030000000101000200000000200000000000000000000011004001000000000000000000020000000000000552510000530900000000000000000280121181932480000000001000000010020000000000000000000001601021000000010000300012006120200020000000000002010000100000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAAGT...............................................................................................................221216.00216000000000000000000000004000000000000000000000010110100000000000000000000000001100000000000000300100000000000003000000000000000000000000000000000000211000000000000000000000000000000000000110210000802300000000000000000070143712213700000000000000000000100000000000000000000011823030200000000000000002012423100010000000000000000001200000
..............................................................................................................................TTTGATCACCAGTAACTGAGATT............................................................................................................................................................231196.0019600000000000000000000000300000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120200000000000000000000000000002000010018039000016049000000000000000000101000100020000000000000000020010000000000000000000001301000000000010000200000007183700040000000000000040000300000
..............................................................................................................................TTTGATCACCAGTAACTGAGATA............................................................................................................................................................231169.0016900000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020029000010046000000000000000000200000401010000000000000000000000000000000000000000000300020000000000000100000009193900010000000000000040000300000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAGT...............................................................................................................231149.0014900000000000000000000000200000000000000000020000030000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000030000000000000000000000000000000000010021800008013000000000000000000000205700040000000000000000000010000000000000000000001602000200000000000100122011500000023000000000001020000600002
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AA...................................................................................................................191119.001190000000000000000000000019000000000000000000000010010000000000000000000000000000000000000001000200400000000000001000000000000000000000000000000000000000000000000000000000100010000011000000293150000130400000000000000000010000211000000000000000100000000000000000000000000000020100000000000000000000000080200010000000000000020000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGAC.............................................................................................................................................................22147.00470000000000000000000000010000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001004060000302000000100000000000001000100000000000000000000000000000000000000000000001101000000000000000000001006102100000000000000000010000000000
.............................................................................................................................CTTTGATCACCAGTAACTGAGAT.............................................................................................................................................................23144.0044000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000609000030800000000000000000010000000000000000000000000100000000000000000000000000010000000000000000000000000100500010000000000000040001000000
..............................................................................................................................TTTGATCACCAGTAACTGA................................................................................................................................................................19144.00440000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001304000090100000020000000000101200000000000000000000000000000000000000000000000000011000000000000200000000000100000021000000000000010000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATC............................................................................................................................................................23140.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000100000000002510000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATTG--TT.......................................................................................................................................................26140.0040000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000606000030600000000000000000010000030000000000000000000000000000000000000000000000010000000000000000000000000161000100000000000000010001000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAAGA...............................................................................................................22138.0038000000000000000000000003000000000000000002000000000000000000000000000000000000000000000000000100000000000000002000000000000000000000000000000000000000000000000000000000000100000000000000416000010100000000000000000100010141030000000000000000000000000000000000000000000000100000000000000000000101101000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGAA.............................................................................................................................................................22137.0037000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000200205000040400000000000000000000000010000000001000000000000000000000000000000000000010000000000000010000000000162200000000000000000010000200000
.............................................................................................................................CTTTGATCACCAGTAACTGAGA..............................................................................................................................................................22136.0036000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000405000000700000000000000001000010100000000000000000000000001000000000000000000000100000000000000000000000000152200000000000000000010000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAAG................................................................................................................21136.0036000000000000000000000003000000000000000000000010000000000000000000000000000000000000000000000110000010000000001001000000000000000000000000000000000000000000000000000000000021000010000000002000010100000000000000000310001450000000000000000000000000000000000000000000000010000000000000000000000100010100000000000000000100000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATAT--C........................................................................................................................................................25130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTGATCACCAGTAACTGAGAT.............................................................................................................................................................21127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100505000040800000000000000000010000000001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CTTTGATCACCAGTAACTGAG...............................................................................................................................................................21126.0026000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000404000000100000000000000000020000000000000000000000000000000000000000000000000000000102000000000000000000000160000000000000000000000000000000
......................................................................................................................................................................................................................................................................T-CG---------A-TGGGGCACTCAGGCT.............19125.0025000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000002000000000000000000000000000000000000002000020000000000000000000220000320001000000000000000000000000000000000000000000000000000000000000000000000030000110000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGAG.............................................................................................................................................................22124.0024000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000700000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000173200000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATTG--TTT-.....................................................................................................................................................27122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003020000101000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000120000000000000000001010000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATTG--.........................................................................................................................................................24116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000505000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000200000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGC..............................................................................................................................................................21113.0013000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000250000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAGA...............................................................................................................23113.0013000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000100000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000211011000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAA................................................................................................................22113.0013000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000010100000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTG.................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202000040100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAA..................................................................................................................1919.009000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAAGC...............................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000120010000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAT................................................................................................................2217.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000002000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATAA--.........................................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGG..............................................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000020000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATTG--T........................................................................................................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000101000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000
................................................................................................................................TGATCACCAGTAACTGAGATTG--T........................................................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTGATCACCAGTAACTGAGA..............................................................................................................................................................2016.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGT..............................................................................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000020000000020000000000000000001000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AT...................................................................................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-A....................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001001000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAGC...............................................................................................................2315.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000010000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................CTT-CG---------A-TGGGGCACTCAGGCT.............2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................TTTCTGGCAATC-AAAAG................................................................................................................1714.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAA.................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................ATCACCAGTAACTGAGAT.............................................................................................................................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAC................................................................................................................2214.004000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATTT--.........................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATTG--TTT-C....................................................................................................................................................2814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TT-CG---------A-TGGGGCACTCAGGCT.............2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAAGTT..............................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCGTTTTCTGGCAATC-AAAAGAA..............................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TATC--A------------------AGGGCCGAGTTACC...................................................................................................................................................................................1913.003000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000
...................................................................................................................................TCACCAGTAACTGAGAT.............................................................................................................................................................1713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGATG............................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAGTT..............................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACCTTTGATCACCAGTAACTGA................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTGATCACCAGTAACTGAGATAT--C........................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GTTTTCTGGCAATC-AAAA.................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTCGTTTTCTGGCAATC-AAAAGAT..............................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTTGATCACCAGTAACTGAGCC.............................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
ACGTGGCATCAATCCT-ATTCAACTGATG--GAAA----------------------------------------------CCTGAT--TC--A------------------TGGGTCGAGTTACCATTGATCACCGGTTACTGAGGTTG--TGC-CACA----TTCGGCTTCGTTTCCTGGCGATC-AAAAGAACTCGACTCG-G------CTCG--------------------AA--------------TCCCAGTACCT-CC---------T-TGGGGCACTCAAGCTATAAGGTAGAAAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................................ATTGATCACCGGTTACTGAGG..............................................................................................................................................................2111689.001689506015351430
..............................................................................................................................ATTGATCACCGGTTACTGAGGT.............................................................................................................................................................2211540.001540204114161170
..............................................................................................................................ATTGATCACCGGTTACTGAG...............................................................................................................................................................201149.00149002013980
..............................................................................................................................ATTGATCACCGGTTACTGAGGTT............................................................................................................................................................231142.001421000128130
..............................................................................................................................ATTGATCACCGGTTACTGAGGTTT--.........................................................................................................................................................24120.002000001730
.............................................................................................................................CATTGATCACCGGTTACTGAGG..............................................................................................................................................................2219.0090000810
..............................................................................................................................ATTGATCACCGGTTACTGA................................................................................................................................................................1919.0090000810
..............................................................................................................................ATTGATCACCGGTTACTGAGGC.............................................................................................................................................................2219.0090000810
.............................................................................................................................CATTGATCACCGGTTACTGAGGT.............................................................................................................................................................2316.0060000510
..........................................................................................................................................................................TTCGTTTCCTGGCGATC-AAAAG................................................................................................................2215.0050000500
..............................................................................................................................ATTGATCACCGGTTACTGAGT..............................................................................................................................................................2114.0040000400
..............................................................................................................................ATTGATCACCGGTTACTGAGGTA............................................................................................................................................................2314.0041000210
..........................................................................................................................................................................TTCGTTTCCTGGCGATC-AAA..................................................................................................................2013.0031000200
..........................................................................................................................................................................TTCGTTTCCTGGCGATC-AAAAGT...............................................................................................................2313.0030000300
..............................................................................................................................ATTGATCACCGGTTACTGAGGG.............................................................................................................................................................2213.0030000210
..............................................................................................................................ATTGATCACCGGTTACTGAGA..............................................................................................................................................................2112.0020000110
..............................................................................................................................ATTGATCACCGGTTACTGT................................................................................................................................................................1912.0020000200
...............................................................................................................................TTGATCACCGGTTACTGAGGTTG--TG.......................................................................................................................................................2511.0010000100
...............................................................................................................................TTGATCACCGGTTACTGAGG..............................................................................................................................................................2011.0011000000
..........................................................................................................................................................................TTCGTTTCCTGGCGATC-AA...................................................................................................................1911.0010000100
...............................................................................................................................TTGATCACCGGTTACTGAG...............................................................................................................................................................1911.0011000000
..............................................................................................................................ATTGATCACCGGTTACTG.................................................................................................................................................................1811.0010000010
..........................................................................................................................................................................TTCGTTTCCTGGCGATC-AAAA.................................................................................................................2111.0010000010
..............................................................................................................................ATTGATCACCGGTTACTGAGGA.............................................................................................................................................................2211.0010000100
...............................................................................................................................TTGATCACCGGTTACTGAGGT.............................................................................................................................................................2111.0010000100
....................................................................................................................................................TG--TGC-CACA----TTCGGCTTCGTTT................................................................................................................................2211.0010000100
..............................................................................................................................ATTGATCACCGGTTACTGAGGTC............................................................................................................................................................2311.0010000010
..............................................................................................................................ATTGATCACCGGTTACTGAGC..............................................................................................................................................................2111.0010000100
droYak3
ACGTGGTATCAAATCTGATTCAACCGAAG--GAAG---------------------------------AA---------AATCTAAT--TC--A------------------TGGGTCGAGTTACCATTGATCACCGGTTACTGAGGTTG--TTC-CTTC----TTTGGCTTCGTTTTCTGGCGATC-AAAAGAACTCGACTCG-A------CTCG--------------------AA--------------TCCAACCAACT-TC---------A-TGGGGCACACAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................................ATTGATCACCGGTTACTGAGG..............................................................................................................................................................211645.0064591830146100000
..............................................................................................................................ATTGATCACCGGTTACTGAGGT.............................................................................................................................................................221280.00280912120112440010
..............................................................................................................................ATTGATCACCGGTTACTGAG...............................................................................................................................................................20181.0081291003660000
..............................................................................................................................ATTGATCACCGGTTACTGAGGTT............................................................................................................................................................23152.0052310001470000
.............................................................................................................................CATTGATCACCGGTTACTGAGG..............................................................................................................................................................22124.0024000000240000
..............................................................................................................................ATTGATCACCGGTTACTGAGGTTT--.........................................................................................................................................................24113.0013200000110000
.............................................................................................................................CATTGATCACCGGTTACTGAGGT.............................................................................................................................................................23110.001010000090000
..............................................................................................................................ATTGATCACCGGTTACTGAGGTAT--.........................................................................................................................................................2415.00510000040000
..............................................................................................................................ATTGATCACCGGTTACTGAGGC.............................................................................................................................................................2214.00400300010000
..............................................................................................................................ATTGATCACCGGTTACTGAGT..............................................................................................................................................................2113.00300000030000
.............................................................................................................................CATTGATCACCGGTTACTGAG...............................................................................................................................................................2112.00200000020000
..............................................................................................................................ATTGATCACCGGTTACTGAGGTA............................................................................................................................................................2312.00200000020000
..............................................................................................................................ATTGATCACCGGTTACTGAC...............................................................................................................................................................2012.00210000010000
...............................................................................................................................TTGATCACCGGTTACTGAGG..............................................................................................................................................................2012.00200000020000
..............................................................................................................................ATTGATCACCGGTTACTGA................................................................................................................................................................1912.00200001010000
..............................................................................................................................ATTGATCACCGGTTACTGAGC..............................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................TTCGTTTTCTGGCGATC-AAAA.................................................................................................................2111.00100000010000
..............................................................................................................................ATTGATCACCGGTTACTGAGGTAC--.........................................................................................................................................................2411.00100000010000
..............................................................................................................................ATTGATCACCGGTTACTGAGGA.............................................................................................................................................................2211.00110000000000
................................................................................................................................TGATCACCGGTTACTGAGG..............................................................................................................................................................1911.00100000010000
.............................................................................................................................CATTGATCACCGGTTACTGAGGG.............................................................................................................................................................2311.00110000000000
..............................................................................................................................ATTGATCACCGGTTACTGAGGG.............................................................................................................................................................2211.00110000000000
..............................................................................................................................ATTGATCACCGGTTACT..................................................................................................................................................................1711.00100000000010
.................................................................................................................................GATCACCGGTTACTGAGG..............................................................................................................................................................1811.00100000010000
.............................................................................................................................CATTGATCACCGGTTACTGAGA..............................................................................................................................................................2211.00110000000000
...............................................................................................................................TTGATCACCGGTTACTGAGGT.............................................................................................................................................................2111.00100000010000
droEug1
ACATGGCTTCAAATCTGATTCAACCAAGG--GGAC---------------T-----------TACAGTGT-----------GATA---AACAA------------CGATCTT-TGGCCGAGTTCTCTTTGATCACCGGTTACTGAGGTTG--TTA-CCAG----TCCGGCTTCGTTTTCTGGCGATC-AAACAAACTCGACTTC-AA--AA-CCCA--------------------AA--------------CCCAACTTCCT-CG---------C-CGGGGCACACAAGCTCTAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droBia1
ACATGGTGTCAAATCTGAATTACCTGGAG--TGTG---------------CAATAGTGGTTTCACA----------------------AAAAG------------CAATTCG-GGGTCGAGTTCTCTTTGATCACCGGTTACTGATGTTG--TTTTCCGA----CGCGGCTTCGTTTTCTGGCGATC-AAACAAACTCGACCCA-AA--G------------------------------------------GCCAACCAACC-CG-----------TCGGGCACTCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droTak1
ACATGGCATTAAATCTGATTCAACTAAAG--GAAC---------------T-----------TGTAGTGA-----------GCCCACTATCAA------------CGATTCA-CGGCCGAGTTCTCTTTGATCACCGGTTACTGAGGTAC--TTT-TCGC----TTTTTCTTCGTTTTCTGGCGATC-AAATAAACTCGACTTA-AA--A------------------------------------------CCCAACCAACT-CG---------A-CGGGGCACCCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droEle1
ACATGGTATCAAATCTAATTCAACAAATG--AAAC--GCCAGTC------T-----------CATAGTGA----------------T------------------CATCCTT-GGGCAGAGTTCTCTTTGATCACCGGTTACTGAGGTTG--TTC-TCGC----TTCGGCTTCGTTTTCTGGAGATC-AAATAAACTCGAA---------------------------------------------------CCCAATTACCT--------------CGGGGCACCCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droRho1
ACATGGTATCAAATCTAATTCAACTGAAG--ACC---------------------------------TGA-----------GA---T------------------CGTCCTTAGAGCCGAGTTCTCTTTGATCACCGGTTACTGAGGTTG--TTC-TCGC----TCCGACTTCGTTTTCTGGCGATC-AAATAAACTCGGCTTT-GA--G------------------------------------------TTCAACTACCT-CC---------A-CGGGGCACTCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droFic1
ACATGGCATCAAATCTGATTCATCCGCGGAAGCTG-----------------------------T---GA-----------AC-----CAA--CGAA--------CGTCTCTGGGGTCGAGTTCTGTTTGATCACCGGTTACTGAGGTCC--TTT-CCAC----TCCGACTTCGTTTTCTGGCGATC-AAACAAACTCGGCTCG-GA--A------------------------------------------GCCATCC--CC-CC---------A-CTGGGCAGTCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droKik1
ACATGGCAGCAAAGCCAAGTCGACGGTGG---AAA---------------G-----------TGCAA---------------------CAC--TGAA--------GGCG---TCCGAGGAGTTGGCTTTGATCACCGGTAACTGAGGTCG--TCA-CGCC--CAATCGACTTCGTTTTCTGGCGATC-AAACAAACTCGTCTCG-GA--A--CTCCAA-----C------------ATCCT------------GGAACTCCCT-GC---------C-CAAGGCACTCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
droAna3
ACATGGCATCAAATCTGTGTCAACGGCAGCAGGAC---------------T----------CCACAAAGGACTACAGGAAAG-----------------------CGACTTA-AGTCCGAGCACTATTTGATCACTGGTTACTGAGGTTG--TTT-TGTC----ATAAGCTTCGTTTTCTGGCGATC-AAATACGCTCGACTTT-GG--G------------------------------------------CCCAACCACCT-GG---------CCGAGGGCACTCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................................TTTGATCACTGGTTACTGAGG..............................................................................................................................................................211228.0022816001318613
..............................................................................................................................TTTGATCACTGGTTACTGAGGT.............................................................................................................................................................221104.0010451011789
..............................................................................................................................TTTGATCACTGGTTACTGAG...............................................................................................................................................................20118.00181001160
..............................................................................................................................TTTGATCACTGGTTACTGAGGTT............................................................................................................................................................23114.00140000140
..............................................................................................................................TTTGATCACTGGTTACTGAGGTTT--.........................................................................................................................................................2418.008000080
.............................................................................................................................ATTTGATCACTGGTTACTGAGG..............................................................................................................................................................2218.008000152
.............................................................................................................................ATTTGATCACTGGTTACTGAG...............................................................................................................................................................2113.003000120
..............................................................................................................................TTTGATCACTGGTTACTGAGA..............................................................................................................................................................2112.002000020
..............................................................................................................................TTTGATCACTGGTTACTGAGGTTA--.........................................................................................................................................................2411.001000010
..............................................................................................................................TTTGATCACTGGTTACTGAGC..............................................................................................................................................................2111.001000010
...............................................................................................................................TTGATCACTGGTTACTGAGG..............................................................................................................................................................2011.001100000
..............................................................................................................................TTTGATCACTGGTTACTGA................................................................................................................................................................1911.001000010
..............................................................................................................................TTTGATCACTGGTTACTGAGT..............................................................................................................................................................2111.001000010
................................................................................................................................TGATCACTGGTTACTGAGGTT............................................................................................................................................................2111.001000010
..............................................................................................................................TTTGATCACTGGTTACTGAGGA.............................................................................................................................................................2211.001000010
...............................................................................................................................TTGATCACTGGTTACTGAG...............................................................................................................................................................1911.001100000
...........................................................................................................................................................................TCGTTTTCTGGCGATC-AAATA................................................................................................................2111.001000010
..............................................................................................................................TTTGATCACTGGTTACTGAGGC.............................................................................................................................................................2211.001000001
..............................................................................................................................TTTGATCACTGGTTACTGAGGTC............................................................................................................................................................2311.001000100
..........................................................................................................................................................................TTCGTTTTCTGGCGATC-AAATT................................................................................................................2211.001000010
droBip1
ACATGGCATCAAATAAAAGTCATCGGCAGCTGGAC---------------T----------TCATCAAGTACTATTTTAGAG-----------------------CTACATA-AGTTCGAGTATTATTTGATCACTGGTTACTGAGGTTG--TGT-CTGC----ATCAGCTTCATTTTCTGGCTATC-AAATACACACGACTTT-GG--G------------------------------------------CCCAACCACCT-GG---------TCGGGGGCACCCAAGCTATAAGGTAGAGAASizeHit CountTotal NormTotal
No Reads
dp5
ATATGGCAGCCACTAA-AGACAACCAGAG--GAG-----------------------------------A-----------GCTGTTTCGC--CGGA--------C-------AGTCAGAGTTTGATTTGATCTCTAGTTACTGGGCTTT--GAT-TCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGACTCG-AG--TGCCACA--------------------AA--------------TGCCACATGAT-GC-------AAA-TGGAGCAGTCGTGTTTTAAGGTACAGACSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................................TTTGATCTCTAGTTACTGGGC..............................................................................................................................................................211743.007435701011007190
...........................................................................................................................................................................TATTATTCTAGTGATTGAAATGA...............................................................................................................231616.00616000000306130
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAATGA...............................................................................................................241574.00574000000015721
..............................................................................................................................TTTGATCTCTAGTTACTGGGCT.............................................................................................................................................................221451.0045147300017803220
...........................................................................................................................................................................TATTATTCTAGTGATTGAAAT.................................................................................................................211236.00236110000102330
.............................................................................................................................ATTTGATCTCTAGTTACTGGGC..............................................................................................................................................................221215.00215100000402100
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAAT.................................................................................................................221192.00192010000001910
...........................................................................................................................................................................TATTATTCTAGTGATTGAAATG................................................................................................................221172.00172100000001710
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAATG................................................................................................................231158.00158000000001580
..........................................................................................................................................................................TTATTATTCTAGTGATTGAA...................................................................................................................201154.00154010100201500
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAA..................................................................................................................211129.00129100000001280
...........................................................................................................................................................................TATTATTCTAGTGATTGAAA..................................................................................................................201112.00112000000301090
.............................................................................................................................ATTTGATCTCTAGTTACTGGGCT.............................................................................................................................................................23191.009181000090730
..............................................................................................................................TTTGATCTCTAGTTACTGGG...............................................................................................................................................................20191.009121000140830
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTT............................................................................................................................................................23188.008852000040770
.............................................................................................................................ATTTGATCTCTAGTTACTGG................................................................................................................................................................20172.007201000020690
...........................................................................................................................................................................TATTATTCTAGTGATTGAA...................................................................................................................19152.005211000000500
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTTT--.........................................................................................................................................................24147.004710000010450
..............................................................................................................................TTTGATCTCTAGTTACTGG................................................................................................................................................................19137.003710000020340
.............................................................................................................................ATTTGATCTCTAGTTACTGGG...............................................................................................................................................................21135.003500000010340
.............................................................................................................................ATTTGATCTCTAGTTACTGGGCTT............................................................................................................................................................24134.003400000000340
..............................................................................................................................TTTGATCTCTAGTTACTGGGT..............................................................................................................................................................21130.003010000010280
.........................................................................................................................................................................CTTATTATTCTAGTGATTGAAAT.................................................................................................................23129.002901000000280
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTTT--T........................................................................................................................................................25127.002700000010260
..........................................................................................................................................................................TTATTATTCTAGTGATTGA....................................................................................................................19121.002101000000200
............................................................................................................................................................................ATTATTCTAGTGATTGAAATGA...............................................................................................................22118.001800000000180
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAATT................................................................................................................23115.001500000000150
............................................................................................................................GATTTGATCTCTAGTTACTGGGC..............................................................................................................................................................23115.001500000000150
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAATGT...............................................................................................................24115.001500000000150
............................................................................................................................................................................ATTATTCTAGTGATTGAAATG................................................................................................................21114.001400000000140
...........................................................................................................................................................................TATTATTCTAGTGATTGAAATT................................................................................................................22111.001100000000110
.............................................................................................................................................................................TTATTCTAGTGATTGAAATGA...............................................................................................................21110.001000000000100
.........................................................................................................................................................................CTTATTATTCTAGTGATTGAAATGA...............................................................................................................2518.0080000000080
...........................................................................................................................................................................TATTATTCTAGTGATTGAAATGT...............................................................................................................2318.0080000001070
.............................................................................................................................ATTTGATCTCTAGTTACTGGGT..............................................................................................................................................................2217.0070000001060
............................................................................................................................GATTTGATCTCTAGTTACTGGGCT.............................................................................................................................................................2417.0070000000070
.............................................................................................................................ATTTGATCTCTAGTTACTGGGCTTT--.........................................................................................................................................................2516.0060000000060
..............................................................................................................................................................................TATTCTAGTGATTGAAATGA...............................................................................................................2015.0050000000050
.............................................................................................................................ATTTGATCTCTAGTTACTGGGCTTT--T........................................................................................................................................................2615.0050000000050
.............................................................................................................................ATTTGATCTCTAGTTACTG.................................................................................................................................................................1915.0050000000050
...........................................................................................................................................................................TATTATTCTAGTGATTGA....................................................................................................................1815.0050000000050
...........................................................................................................................................................................TATTATTCTAGTGATTGAAAC.................................................................................................................2114.0040000000040
.........................................................................................................................................................................CTTATTATTCTAGTGATTGAAA..................................................................................................................2214.0040000000040
...............................................................................................................................TTGATCTCTAGTTACTGGGCT.............................................................................................................................................................2113.0031000000020
...............................................................................................................................TTGATCTCTAGTTACTGGGCTT............................................................................................................................................................2213.0030000001020
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTTG--.........................................................................................................................................................2413.0030000000030
.............................................................................................................................................................................TTATTCTAGTGATTGAAAT.................................................................................................................1913.0030000000030
...........................................................................................................................................................................TATTATTCTAGTGATTGAAATA................................................................................................................2213.0030000000030
.........................................................................................................................................................................CTTATTATTCTAGTGATTGAA...................................................................................................................2113.0030000000030
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTTT--TT.......................................................................................................................................................2613.0030000000030
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAATGAA..............................................................................................................2513.0030000000030
..............................................................................................................................TTTGATCTCTAGTTACTGGGA..............................................................................................................................................................2112.0020000000020
............................................................................................................................GATTTGATCTCTAGTTACTGG................................................................................................................................................................2112.0020000000020
..............................................................................................................................TTTGATCTCTAGTTACTGGGCG.............................................................................................................................................................2212.0022000000000
..........................................................................................................................................................................TTATTATTCTAGTGATTG.....................................................................................................................1812.0020000000020
...........................................................................................................................................................................TATTATTCTAGTGATTGAAATGAA..............................................................................................................2412.0020000000020
....................................................................................................................................................TT--GAT-TCGAAATAAGTAG........................................................................................................................................1812.0020000000020
..............................................................................................................................TTTGATCTCTAGTTACTGGGCC.............................................................................................................................................................2212.0022000000000
.........................................................................................................................................................................CTTATTATTCTAGTGATTGAAATG................................................................................................................2412.0020000000020
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTAA--A........................................................................................................................................................2511.0010000000010
...............................................................................................................................TTGATCTCTAGTTACTGGG...............................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................TATTATTCTAGTGATTGAAAAA................................................................................................................2211.0010000000010
.............................................................................................................................ATTTGATCTCTAGTTACTGGTT..............................................................................................................................................................2211.0010000000010
.............................................................................................................................ATTTGATCTCTAGTTACTGGGA..............................................................................................................................................................2211.0010000000010
...................................................................................................................................................TTT--GAT-TCGAAATAAGTAGC.......................................................................................................................................2011.0010000000010
............................................................................................................................................................................ATTATTCTAGTGATTGAAA..................................................................................................................1911.0010000000010
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAACT................................................................................................................2311.0010000000010
..............................................................................................................................TTTGATCTCTAGTTACTGGGCTGG--.........................................................................................................................................................2411.0010000000010
........................................................................................................................................................................................................................................................................................AGCAGTCGTGTTTTAAGGTAC....2111.0011000000000
...................................................................................................................................................TTT--GAT-TCGAAATAAGTAGCT......................................................................................................................................2111.0011000000000
............................................................................................................................................................................ATTATTCTAGTGATTGAA...................................................................................................................1811.0010000000010
...............................................................................................................................TTGATCTCTAGTTACTGGGCTTT--GA.......................................................................................................................................................2511.0010000000010
.............................................................................................................................................................................TTATTCTAGTGATTGAAATG................................................................................................................2011.0010000000010
................................................................................................................................................................................TTCTAGTGATTGAAATG................................................................................................................1711.0010000000010
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAATTT...............................................................................................................2411.0010000000010
..............................................................................................................................TTTGATCTCTAGTTACTGGT...............................................................................................................................................................2011.0010000000010
..............................................................................................................................TTTGATCTCTAGTTACTG.................................................................................................................................................................1811.0010000000010
....................................................................................................................................................TT--GAT-TCGAAATAAGTAGC.......................................................................................................................................1911.0010000000010
..........................................................................................................................................................................TTATTATTCTAGTGATTGAAG..................................................................................................................2111.0010000000010
............................................................................................................................................................................ATTATTCTAGTGATTGAAAT.................................................................................................................2011.0010000000010
droPer2
ATATGGCAGCCACTAA-AGACAACCAGAG--GAG-----------------------------------A-----------GCTGTTTCGC--CGGA--------C-------AGTCAGAGTTTGAGTTGATCTCTAGTTACTGGGCTTT--GAT-TCGAAATAAGTAGCTTATTATTCTAGTGATTGAAATGAACTCGACTCG-AG--TGCCACA--------------------AA--------------TGCCACATGAT-GC-------AAA-TGGAGCAGTCGTGTTTTAAGGTACAGACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................................GTTGATCTCTAGTTACTGGGCT.............................................................................................................................................................2214.004000202
..............................................................................................................................GTTGATCTCTAGTTACTGGGCTT............................................................................................................................................................2311.001000001
droWil2
ACATGGCCCAAATGATAAATGA-C----------------AGTGACAATGAAAAAGAAAATACCA-A---------------------AACA--GAAATTGTGTGAAACTTG-AGTTTGAGTTTACATTGATCACTGGTTAGTGAGGTTCAAAGT-CAGA----CCCAACTTCGTTATCTGGCGATC-AAATAAACCTGGCTTA-CAAAAGCTATAATTGCTGAAATGGATACACGTT--------------TT---CTATTT-AA---------T-AAGGACCCTCAAGTTATAAGGTAGAGAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................................ATTGATCACTGGTTAGTGAGGT.............................................................................................................................................................22170.0070016612
..............................................................................................................................ATTGATCACTGGTTAGTGAGG..............................................................................................................................................................21167.0067055507
..............................................................................................................................ATTGATCACTGGTTAGTGAGGTT............................................................................................................................................................23158.0058025420
..............................................................................................................................ATTGATCACTGGTTAGTGAG...............................................................................................................................................................2018.00800800
..............................................................................................................................ATTGATCACTGGTTAGTGAGGTTG...........................................................................................................................................................2412.00200200
.............................................................................................................................CATTGATCACTGGTTAGTGAGG..............................................................................................................................................................2212.00200200
..............................................................................................................................ATTGATCACTGGTTAGTGAGGTCT...........................................................................................................................................................2412.00200200
..............................................................................................................................ATTGATCACTGGTTAGTGA................................................................................................................................................................1912.00200101
..............................................................................................................................ATTGATCACTGGTTAGTGAGGTTC...........................................................................................................................................................2412.00200110
..............................................................................................................................ATTGATCACTGGTTAGTGAGGTC............................................................................................................................................................2312.00200200
..............................................................................................................................ATTGATCACTGGTTAGTGAGGTGT...........................................................................................................................................................2411.00100100
.............................................................................................................................CATTGATCACTGGTTAGTGAG...............................................................................................................................................................2111.00100100
......................................................................................................................................................................................................................................................................T-AA---------T-AAGGACCCTCAAGTT.............1911.00110000
.........................................................................................ACA--GAAATTGTGTGAAACTTG-AGTT............................................................................................................................................................................................2580.13100010
.....................................................................................................................TGAGTTTACATTGATCACTGGTT.....................................................................................................................................................................2380.13101000
.................................................................................................ATTGTGTGAAACTTG-AGTTTGAGT.......................................................................................................................................................................................2480.13100010
...................................................................................................TGTGTGAAACTTG-AGTTTGAGTTTACA..................................................................................................................................................................................2780.13100010
..................................................................................................................GTTTGAGTTTACATTGATCACTGG.......................................................................................................................................................................2480.13101000
...................................................................................................................TTTGAGTTTACATTGATCACTGGT......................................................................................................................................................................2480.13100010
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATTTTTCAGTGAAT-TAAACAACTCAATTTA-CA--C---ACA--------------------CA--------------CACA-CACATAAGA---------A-AGGGCGCCTCAAATTATAAGGTAGAGAASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................................................................................................................................................................................................AAGA---------A-AGGGCGCCTCAAATT.............2011.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ATAAGA---------A-AGGGCGCCTCAAATC.............2211.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TAAGA---------A-AGGGCGCCTCAAATT.............2111.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGA---------A-AGGGCGCCTCAAATT.............1911.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................ATAAGA---------A-AGGGCGCCTCA.................1811.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
droMoj3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAGCGCTCAAGTTATAAGGTAGAGATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
ATTTGTCATAAGACTTCACATAACAAAAT--GTTGTTAGCAGCCACAT--C---------TCTGAATTGA-------------------AT--T------------GGA---TTCGTTTTACTTTCTTTTATTACTGA--AATG-AGTTG--T-----------------TCAGTTCTT---------------------TTAA-A------TTTC--------------------AGTCTACAAACTAAGAGCAGGTTACTT-TCATAACACACTCAAGAGCTCTCAGATTATAAGGTAGAGATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:45 PM