ID:

dse_333

 Coordinate:

scaffold_14:544079-544125 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.3 -28.1 -28.0

Flybase annnotation

Antisense to exon [dsec_GLEANR_17832:1]; Antisense to CDS [Dsec\GM16657-cds]

No Repeatable elements found

Sense Strand Reads

GATGGCGGAGTGGAAGGAGCCAGGGGAGATGGCGCCTCAGCAGGAGTGGCAGGTGCCACCGGAACTGGGGCCGTCACTGGTTTTGTGGGTGGTGGTGATTCCTTCTTGGGTGCAGACTTCGGATCTTCAATGGCCTTTGGCGCATCC
***********************************(((((.((((((.((...(((((((((((((((........))))))))...))))))))).)))))).)).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 M054
female body
 V115
head
 V114
embryo
.............................................................................TGATTTTGTGGGTGGTGGT................................................... 19 1 2 1514.50 3029 1800 394 598 237
............................................................................TTGATTTTGTGGGTGGTGGT................................................... 20 2 5 479.80 2399 1690 230 388 91
.............................................................................TGATTTTGTGGGTGGTGGTG.................................................. 20 1 1 144.00 144 2 109 29 4
..............................................................................GATTTTGTGGGTGGTGGTG.................................................. 19 1 3 107.67 323 1 254 57 11
................................................................................TTTTGTGGGTGGTGGTGC................................................. 18 1 4 79.50 318 0 318 0 0
...............................................................................ATTTTGTGGGTGGTGGTG.................................................. 18 1 4 57.75 231 1 219 11 0
.............................................................................TGATTTTGTGGGTGGTGGTGC................................................. 21 2 4 37.25 149 3 128 15 3
............................................................................TTGATTTTGTGGGTGGTGGTG.................................................. 21 2 3 30.00 90 4 65 19 2
..............................................................................GGTTTTGTGGGTGGTGGT................................................... 18 0 1 13.00 13 3 8 2 0
............................................................................TTGATTTTGTGGGTGGTG..................................................... 18 2 20 11.55 231 0 220 10 1
...............................................................................ATTTTGTGGGTGGTGGTGAAT............................................... 21 2 2 6.00 12 12 0 0 0
...........................................................................CCTGATTTTGTGGGTGGTGGT................................................... 21 2 1 6.00 6 4 0 2 0
............................................................................CTTGATTTGTGGGTGGTGGT................................................... 20 2 3 5.33 16 9 0 5 2
...........................................................................CTTGGTTTTGTGGGTGGTGGT................................................... 21 2 2 4.50 9 7 2 0 0
..............................................................................GCTTTTGTGGGTGGTGGT................................................... 18 1 4 3.50 14 4 0 6 4
...........................................................................ATTGATTTTGTGGGTGGTGGT................................................... 21 2 2 3.00 6 2 0 3 1
............................................................................CTGATTTTGTGGGTGGTGGT................................................... 20 1 1 3.00 3 0 0 2 1
.............................................................................TGATTTTGTGGGTGGTGGC................................................... 19 2 10 2.40 24 23 1 0 0
.............................................................................TGATTTTGTGGGTGGTGG.................................................... 18 1 3 2.33 7 1 3 2 1
................................................................................TTTTGTGGGTGGTGGTGAAT............................................... 20 1 1 2.00 2 1 0 1 0
.............................................................................TGATTTTGTGGGTGGTGGA................................................... 19 2 8 2.00 16 16 0 0 0
...............................................................................ATTTTGTGGGTGGTGGTGATGGC............................................. 23 3 2 2.00 4 3 1 0 0
..............................................................................GGTTTTGTGGGTGGTGGTGC................................................. 20 1 1 2.00 2 0 2 0 0
................................................................................TTTTGTGGGTGGTGGTGCTT............................................... 20 1 1 2.00 2 2 0 0 0
.........................................................................TCCTTGATTTTGTGGGTGGTGGT................................................... 23 3 3 1.67 5 2 1 2 0
.............................................................................TGATTTTGTGGGTTGTGGT................................................... 19 2 5 1.60 8 3 3 1 1
............................................................................CTTATTTTGTGGGTGGTGGT................................................... 20 2 3 1.33 4 2 2 0 0
..............................................................................GATTTTGTGGGTGGTGGTGA................................................. 20 1 1 1.00 1 1 0 0 0
.............................................................................TGGTTTTGTGGGTGGTGGT................................................... 19 0 1 1.00 1 0 1 0 0
.........................................................................TTCCTGATTTTGTGGGTGGTGGT................................................... 23 3 3 1.00 3 1 1 0 1
..............................................................................GATTTTGTGGGTGGTGGTGAAT............................................... 22 2 2 1.00 2 1 1 0 0
............................................................................CTGATTTTGTGGGTGGTGGTG.................................................. 21 1 1 1.00 1 0 1 0 0
...........................................................................CTTGGTTTTGTGGGTGGTGGTG.................................................. 22 2 1 1.00 1 1 0 0 0
..............................................................................GATTTTGTGGGTGGTGGTGATG............................................... 22 2 1 1.00 1 1 0 0 0
............................................................................TTGGTTTTGTGGGTGGTGGT................................................... 20 1 1 1.00 1 1 0 0 0
...............................................................................ATTTTGTGGGTGGTGGTGAA................................................ 20 2 4 1.00 4 3 0 1 0
.............................................................................TGCTTTTGTGGGTGGTGGT................................................... 19 1 3 1.00 3 2 0 0 1
................................................................................TTTTGTGGGTGGTGGTGT................................................. 18 1 2 1.00 2 0 1 0 1
............................................................................ATGATTTTGTGGGTGGTGGTG.................................................. 21 2 1 1.00 1 0 1 0 0
.................................................................................TTTGTGGGTGGTGGTGCTT............................................... 19 1 1 1.00 1 0 1 0 0
...............................................................................GTTTTGTGGGTGGTGGTGCAT............................................... 21 2 2 1.00 2 1 0 1 0
.................................................................................TTTGTGGGTGGTGGTCAT................................................ 18 1 3 1.00 3 1 0 2 0
.............................................................................TGATTTTGTGGGGGGTGGT................................................... 19 2 4 1.00 4 2 0 1 1
...........................................................................TCTGATTTTGTGGGTGGTGGT................................................... 21 2 2 1.00 2 1 1 0 0
.............................................................................TGATTTTGTAGGTGGTGGT................................................... 19 2 7 0.86 6 2 0 4 0
.............................................................................TGATTTTGTGGGTGGTCGT................................................... 19 2 6 0.67 4 4 0 0 0
................................................................................TTTTGTGGGTGGTGGTGCTTG.............................................. 21 2 3 0.67 2 2 0 0 0
............................................................................TTGATTTTGTGGGTGGTGG.................................................... 19 2 12 0.67 8 1 5 2 0
............................................................................TTGGTTTTGTGGGTGGTGGTGCAT............................................... 24 3 3 0.67 2 2 0 0 0
.............................................................................TGATTTTGTGGGTGCTGGT................................................... 19 2 6 0.67 4 1 1 1 1
.............................................................................TGATTTTGTGGGCGGTGGT................................................... 19 2 6 0.67 4 3 0 1 0
.................................................................................TTTGTGGGTGGTGGTGATGGC............................................. 21 2 3 0.67 2 2 0 0 0
.............................................................................TGATTTTGTGGGTCGTGGT................................................... 19 2 3 0.67 2 1 0 0 1
..........................................................................TCCTGATTTTGTGGGTGGTGGT................................................... 22 3 5 0.60 3 3 0 0 0
.............................................................................TGATTTTATGGGTGGTGGT................................................... 19 2 5 0.60 3 1 0 2 0
................................................................................TTTTGTGGGTGGTGGTGCCT............................................... 20 2 5 0.60 3 3 0 0 0
.............................................................................TGATTTTTTGGGTGGTGGT................................................... 19 2 9 0.56 5 2 1 1 1
............................................................................CTGATTTTGTGGGTGGTG..................................................... 18 1 2 0.50 1 0 1 0 0
.............................................................................TGATTTAGTGGGTGGTGGTG.................................................. 20 2 2 0.50 1 0 0 1 0
.........................................................................TTCTTGGTTTTGTGGGTGGTGGTG.................................................. 24 3 4 0.50 2 0 2 0 0
.........................................................................TTCCTGATTTTGTGGGTGGTGGTG.................................................. 24 3 2 0.50 1 0 1 0 0
..............................................................................GGTTTTGTGGGTGGTGGTGCAT............................................... 22 2 2 0.50 1 0 1 0 0
.............................................................................TGATTTTGTGGGTGGTGGCG.................................................. 20 2 2 0.50 1 0 1 0 0
................................................................................TTTTGTGGGTGGTGGTGAATG.............................................. 21 2 2 0.50 1 0 0 1 0
.............................................................................TGATTTTGTGGGTGGTTGTG.................................................. 20 2 4 0.50 2 1 1 0 0
.............................................................................TGATTTTGTGCGTGGTGGTG.................................................. 20 2 2 0.50 1 0 1 0 0
.............................................................................TGATTTTGTAGGTGGTGGTG.................................................. 20 2 2 0.50 1 0 0 1 0
..............................................................................GATTTTGTGGGTGGTCGTG.................................................. 19 2 6 0.50 3 1 2 0 0
..............................................................................GATTTTGTGGATGGTGGTGAAT............................................... 22 3 2 0.50 1 1 0 0 0
.............................................................................TGATTTTGTGTGTGGTGGT................................................... 19 2 11 0.45 5 1 2 1 1
..............................................................................GATTTTGTGGGGGGTGGTG.................................................. 19 2 5 0.40 2 0 2 0 0
.............................AGGCAACTCAGCAGGAGTGG.................................................................................................. 20 3 8 0.38 3 1 1 1 0
.............................................................................TGATTTTCTGGGTGGTGGT................................................... 19 2 8 0.38 3 0 2 1 0
.................................................................................TTTGTGGGTGGTGGTGCATCCTG........................................... 23 3 3 0.33 1 1 0 0 0
.............................................................................TGATTTTGTGCGTGGTGGT................................................... 19 2 3 0.33 1 0 0 1 0
...........................................................................CATGATTTTGTGGGTGGTGGT................................................... 21 3 9 0.33 3 0 1 2 0
.............................................................................TGATTTCGTGGGTGGTGGT................................................... 19 2 6 0.33 2 1 0 1 0
...............................................................................TTTTTGTGGGTGGTGGTG.................................................. 18 1 6 0.33 2 0 2 0 0
.............................................................................TGATTTTGCGGGTGGTGGT................................................... 19 2 9 0.33 3 3 0 0 0
................................................................................TTTTGTGGGTGGTGGTCATG............................................... 20 2 3 0.33 1 1 0 0 0
..............................................................................GATTTTGTCGGTGGTGGTG.................................................. 19 2 6 0.33 2 0 2 0 0
.............................................................................TGATTTTGTGGGTGGTGGTC.................................................. 20 2 3 0.33 1 0 1 0 0
.............................................................................TGATTTTGTGGGTAGTGGT................................................... 19 2 3 0.33 1 0 0 1 0
............................................................................ATGATTTTGTGGGTGGTGGT................................................... 20 2 3 0.33 1 0 0 1 0
............................................................................CTGATTTTGTGGGTGGTGGTGCAT............................................... 24 3 3 0.33 1 0 1 0 0
............................................................................TTGCTTTTGTGGGTGGTGGT................................................... 20 2 9 0.33 3 2 1 0 0
.............................................................................GGGTTTTGTGGGTGGTGGT................................................... 19 1 3 0.33 1 1 0 0 0
.............................................................................TGATTTTGTGGGTGGGGGT................................................... 19 2 10 0.30 3 0 3 0 0
.........................................................................TTCTTGGTTTTGTGGGTGGTGGT................................................... 23 3 10 0.30 3 3 0 0 0
..............................................................................GATTTTGTGGGTCGTGGTG.................................................. 19 2 7 0.29 2 0 2 0 0
.............................................................................TGATTTTGTGGGTGTTGGT................................................... 19 2 14 0.29 4 4 0 0 0
................................................................................TTTTGTGGGTGGTGGTGCGT............................................... 20 2 7 0.29 2 2 0 0 0
.............................................................................TGATTTTGTGAGTGGTGGT................................................... 19 2 4 0.25 1 0 1 0 0
..............................................................................GATTTTTTGGGTGGTGGTG.................................................. 19 2 12 0.25 3 0 3 0 0
.............................................................................TGATTTTGTGGGTGGTCGTGC................................................. 21 3 8 0.25 2 0 2 0 0
..............................................................................GATTTTGTGGGTAGTGGTG.................................................. 19 2 4 0.25 1 0 1 0 0
................................................................................TTTTGTGGGTGCTGGTGCTT............................................... 20 2 4 0.25 1 1 0 0 0
.............................................................................TGATTTTTTGGGTGGTGGTG.................................................. 20 2 4 0.25 1 0 1 0 0
.............................................................................TGATTTTGTGGGTGGTGGTA.................................................. 20 2 4 0.25 1 0 1 0 0
.............................................................................TGATTTTGTCGGTGGTGGT................................................... 19 2 4 0.25 1 0 0 1 0
..............................................................................GATTTTGTGGGTGGTGGTGT................................................. 20 2 4 0.25 1 1 0 0 0
..............................................................................GATTTTGTGGGTGCTGGTG.................................................. 19 2 9 0.22 2 0 1 1 0
.............................................................................TGATTTTGCGGGTGGTGGTG.................................................. 20 2 5 0.20 1 0 1 0 0
...........................................................................ACAGCTTTTGTGGTTGGTGGT................................................... 21 3 5 0.20 1 0 0 1 0
..............................................................................GATTTTGTGGGTTGTGGTG.................................................. 19 2 5 0.20 1 0 1 0 0
.............................................................................TGATTTTGTGGGTGGTGGTGCGT............................................... 23 3 5 0.20 1 1 0 0 0
................................................................................TTTTGTGGGTGGTGGTGTAT............................................... 20 2 5 0.20 1 1 0 0 0
.............................................................................TGATATTGTGGGTGGTGGT................................................... 19 2 15 0.20 3 2 0 0 1
...............................................................................GATTTGTGGGTGGTGGTG.................................................. 18 1 5 0.20 1 0 1 0 0
..............................................................................GATTTTGTGGGTGGTGTTG.................................................. 19 2 20 0.20 4 3 0 1 0
...............................................................................ATTTTGTGGGTGGTGGTGT................................................. 19 2 16 0.19 3 3 0 0 0
.............................................................................TGATTTTGTGGGTGGTGCT................................................... 19 2 16 0.19 3 3 0 0 0
.................................................................................TTTGTGGGTGGTGGTCATGGC............................................. 21 3 11 0.18 2 2 0 0 0
.............................................................................TGATTTAGTGGGTGGTGGT................................................... 19 2 6 0.17 1 0 0 1 0
............................................................................CTTGATTTGTGGGTGGTGGTGC................................................. 22 3 6 0.17 1 0 0 1 0
..............................................................................GATTTTGTGGGAGGTGGTG.................................................. 19 2 6 0.17 1 0 1 0 0
................................................................................ATTTGTGGGTGGTGGTGCTT............................................... 20 2 6 0.17 1 1 0 0 0
..............................................................................GTTTTTGTGGGTGGTGGT................................................... 18 1 6 0.17 1 0 1 0 0
.................................................................................TTTGTGGGTGGTGGTGCATC.............................................. 20 2 6 0.17 1 0 0 1 0
.............................................................................TGATTTTGTGGGTGGTGGTGGAT............................................... 23 3 6 0.17 1 0 0 1 0
................................................................................TTTTGTGGGTGGTGGTGTA................................................ 19 2 12 0.17 2 1 0 1 0
..............................................................................GATTTTGTGGGTGGTTGTG.................................................. 19 2 13 0.15 2 1 0 1 0
.............................................................................TGATTTTGTGGATGGTGGT................................................... 19 2 20 0.15 3 2 0 0 1
............................................................................CTTGATTTGTGGGTGGTG..................................................... 18 2 20 0.15 3 0 2 1 0
...........................................................................GTTGATTTTGTGGGTGGTGGT................................................... 21 3 20 0.15 3 2 1 0 0
.............................................................................TGATTTTGTGGGTTGTGGTGC................................................. 21 3 7 0.14 1 0 1 0 0
..............................................................................GATTTTGTGCGTGGTGGTG.................................................. 19 2 7 0.14 1 0 1 0 0
............................................................................TTGATTTTGTGGGTGGTGGTGT................................................. 22 3 7 0.14 1 1 0 0 0
.............................................................................TGATTTTGTGGGTGGGGGTG.................................................. 20 2 7 0.14 1 0 1 0 0
.............................................................................TGATTTTGTGGGTGATGGT................................................... 19 2 7 0.14 1 1 0 0 0
..................................................................................TTGTGGGTGGTGGTGCATC.............................................. 19 2 15 0.13 2 1 0 0 1
.............................................................................TGATTTTGTGGGGGGTGGTGC................................................. 21 3 8 0.13 1 0 1 0 0
.............................................................................TGATTTTGTGGGTCGTGGTGC................................................. 21 3 8 0.13 1 0 1 0 0
..............................................................................GATTTTGTGGGTGGTGGTGG................................................. 20 2 8 0.13 1 0 0 1 0
...........................................................................CTTGCTTTTGTGGGTGGTGGTG.................................................. 22 3 8 0.13 1 0 1 0 0
..............................................................................GATTTTGTGGGTGGTAGTG.................................................. 19 2 8 0.13 1 0 1 0 0
.............................................................................TAATTTTGTGGGTGGTGGT................................................... 19 2 9 0.11 1 1 0 0 0
................................................................................TTTTGTGGGTCGTGGTGC................................................. 18 2 18 0.11 2 0 2 0 0
...............................................................................ATTTTGTGGGTTGTGGTG.................................................. 18 2 18 0.11 2 0 2 0 0
.................................................................................TTTGTGGGTGGTGATGTTT............................................... 19 2 9 0.11 1 1 0 0 0
................................................................................TTTTGTGGGTGGTGGTGG................................................. 18 1 9 0.11 1 0 0 1 0
.............................................................................TGATTTTGTGGGTGGTGTTG.................................................. 20 2 9 0.11 1 1 0 0 0
............................................................................TTGATTTTGTGGGTGGTGGCG.................................................. 21 3 9 0.11 1 0 1 0 0
...............................................................................ATTTTGTGGGTGGTCGTG.................................................. 18 2 19 0.11 2 0 0 2 0
..............................................................................GATTTTGTGGCTGGTGGTG.................................................. 19 2 10 0.10 1 0 1 0 0
..............................................................................GATTTTGTGGGTGGTGGTCATG............................................... 22 3 20 0.10 2 1 1 0 0
..............................................................................GCTTTTGTGGGAGGTGGT................................................... 18 2 10 0.10 1 0 0 1 0
............................................................................TTGATTTTGTGGGTGGTTGTG.................................................. 21 3 20 0.10 2 2 0 0 0
...........................................................................TTTGATTTTGTGGGTGGTGGTG.................................................. 22 3 11 0.09 1 1 0 0 0
............................................................................TTGATTTTGTGGGTGGTGGTA.................................................. 21 3 12 0.08 1 1 0 0 0
..............................................................................GATTTTGTGGGTGTTGGTG.................................................. 19 2 13 0.08 1 0 1 0 0
.............................................................................TGATTATGTGGGTGGTGGT................................................... 19 2 14 0.07 1 1 0 0 0
................................................................................TTTTGTGGGTGGTGGTGCC................................................ 19 2 16 0.06 1 0 1 0 0
............................................................................TTGATTTTGTGCGTGGTGGT................................................... 20 3 17 0.06 1 1 0 0 0
...............................................................................GATTTGTGGGTGGTGGTGC................................................. 19 2 19 0.05 1 0 1 0 0
.............................................................................TGATTGTGTGGGTGGTGGT................................................... 19 2 19 0.05 1 0 0 1 0
.............................................................................TGATTTTGTGGGTGGTGTT................................................... 19 2 19 0.05 1 1 0 0 0
..............................................................................TATTTTGTGGGTGGTGGTG.................................................. 19 2 19 0.05 1 0 1 0 0
.............................................................................TGATTTTGTGGGAGGTGGT................................................... 19 2 20 0.05 1 0 0 1 0
.................................................................................TTTGTGGGTGGTGGTGCGT............................................... 19 2 20 0.05 1 0 0 0 1
.................................................................................TTTGTCGGTGGTGGCGAAT............................................... 19 3 20 0.05 1 0 0 1 0
.............................................................................TGATTTTGTGAGTGGTGGTGC................................................. 21 3 20 0.05 1 0 1 0 0
...............................................................................CTTTTGTGGGTGGTGGTGC................................................. 19 2 20 0.05 1 0 1 0 0
...............................................................................ATTTTGTGAGTGGTGGTG.................................................. 18 2 20 0.05 1 0 1 0 0
................................................................................TTTTGTGGGTGGGGGTGC................................................. 18 2 20 0.05 1 0 1 0 0
...............................................................................ATTTTGTGGGAGGTGGTG.................................................. 18 2 20 0.05 1 0 1 0 0
.............................................................................TGATTTTGTGGTTGGTGGTGC................................................. 21 3 20 0.05 1 0 1 0 0
.............................................................................TGATTTTGTGGTTGGTGGT................................................... 19 2 20 0.05 1 0 0 1 0
.............................................................................TGATTTTGTGGGGGGTTGTG.................................................. 20 3 20 0.05 1 0 1 0 0
.............................................................................TGATTTTGTTGGTGGTGGT................................................... 19 2 20 0.05 1 0 1 0 0
...............................................................................ATTTTGTGGGTGGTGGTCATG............................................... 21 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

###################################################################################################################################################
CTACCGCCTCACCTTCCTCGGTCCCCTCTACCGCGGAGTCGTCCTCACCGTCCACGGTGGCCTTGACCCCGGCAGTGACCAAAACACCCACCACCACTAAGGAAGAACCCACGTCTGAAGCCTAGAAGTTACCGGAAACCGCGTAGG
***********************************(((((.((((((.((...(((((((((((((((........))))))))...))))))))).)))))).)).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
......................................................CGGTGCCCTTGACCGCGG........................................................................... 18 2 11 0.18 2 2
....................................................CGAGGTGTCCTTGACCCCGG........................................................................... 20 3 14 0.14 2 2
....................................................CGCGGTGCCCTTGACCGCGG........................................................................... 20 3 9 0.11 1 1
......................................................AGGTGTCCTTGACCCCGG........................................................................... 18 2 11 0.09 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_14:544029-544175 + dse_333 GATGGCGGAGTGGAAGGAGCC---------------AGGGGAGATGGCGCCTCAGCAG---GAG---------------TGGCAGGTGCCACCGG---AA---CTGGGGCCGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATTC------------------------CTTCTTGGGTGCA---GACTTCGGATCTTCAATGGCCTT---------------------------------TGGCGCATCC
droSim2 2l:534862-535008 + GTTGGCGGAGTGGAAGGTGCC---------------AGGGGAGATGGCGCCTCAGCAG---GAG---------------TGGCAGGTACCACCGG---AA---CTGGGGCAGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATTC------------------------CTTCTTGGGTGCA---GCCTTCGGATCTTCAATGCCCTT---------------------------------TGGCGCATCC
dm3 chr2L:561350-561496 + GATGGCGGAGTGGAGGGAGCC---------------AGAGGAGATGGCGCCTCAGCAG---GAG---------------TGGCAGGTGCTACCGG---AA---CTGTTGCCGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATTC------------------------CTTCTTGGGTGCA---GCCTTCGGTTCCTCAATGGCCTT---------------------------------TGGCGCATCC
droEre2 scaffold_4929:616596-616742 + GATGGCGGAGTGGACGGAGCC---------------AAAGGAGATGGCGGCTCAGCTG---GAG---------------TGGCAGGTGCCAACGG---AA---CTGGGGCCGTCACTGGC---------------------------------------------------------------------------------------TTAGTGGGTGGTGGTGATTG------------------------CTTCTTGGATGCA---GCCTTCGGATCTTCAATTGCCTT---------------------------------TGGCGTATCC
droYak3 2L:549433-549579 + GTTGGCGGCGTGGAGGGAGCC---------------AAAGGAGATGGCGCCTCAACAG---GAG---------------TGGCAGGCGCCAACGG---AA---TTGGGGCCGTCACTGGT---------------------------------------------------------------------------------------TTAGTGGGTGGTGGTGATTC------------------------CTTCTTGGCTGCA---GCCTTAGGATCTTCAATTGCCTT---------------------------------TGGCGCATCC
droEug1 scf7180000409554:1293398-1293562 + GACGGTGGAGTACTGGGGCCCATTGGGGATGGAGCTACTGGAGATGGCGCCTCTGCAG---GAA---------------CTGCAGCTGCCACTGG---AACTGCTGGCGGCGTCACTGGC---------------------------------------------------------------------------------------TTGGTGGGTGGAGGTGTCTC------------------------CTTCTTGGCAGCA---AGTTTTGCATCTACAATTGACTT---------------------------------CGCCGCCTGC
droBia1 scf7180000302261:3266101-3266241 - GAGGGCGGAGTGGAGGGGGCC---------------AGAGGAGATGGCGCCTCTGCAG---GAG---------------TGGCCGAGGCCACTGG---AG---CTGGGGGCGTCACTGGC---------------------------------------------------------------------------------------TTGGCGGGAGGCGGTGTCTC------------------------CTTCTTGGACGAATCAGCAGTCAGATCTTGA----GCTT---------------------------------TGGC-----T
droTak1 scf7180000415856:156121-156279 + GA------------GGGAGCC---------------AAGGGGGATGGCGCCTCGGCAG---GAG---------------TGGCCGGAG---CGGG---AA---CTGATGGCGTCTCTGGTTTGGCAGCCTGATCCTGTGGCTTCGGTGGTGC------------------------------------------------------------------CTGAGCCACCTGTGCGTTGGAAAC------------------TTCC---GGTGCTGGCGCCTTGATAGCTTC---------------------------------TGGAGCTGCC
droEle1 scf7180000491026:250317-250448 - GTTGGCGGAGTGGAGGGAGCC---------------ACTGGGGAGGGCGGAGCCACAG---GGG---------------TTGTGGAGGCCACTGG---AG---CTGGGGGCGTCACTGGC---------------------------------------------------------------------------------------TTGCCAGGTGGAGATCTCTC------------------------CTTCTTGGGTGAA---GC---------------AGGCTT---------------------------------TGGCGTCTCC
droRho1 scf7180000779917:78446-78592 - GATGGTGGCGTGGAGGGGGCC---------------GCTGGGGACGGGCCCTCTGCAG---GAG---------------TTGCAGATGCCACTGG---AG---CTGGGGGCGTCACTGGC---------------------------------------------------------------------------------------TTGGTTGGTGGAGTTGTCTC------------------------CTTCCTGGGAGCA---GCTTTAATTTCTTCAACAGGCTT---------------------------------TGGCGTCTCG
droFic1 scf7180000453904:841921-842085 + GACGGAGGAGTGGAGGGGGCC---------------AATGGGGAAGGCGCTTCAGCCG---GAGTGGCGGTGGCCGGAGCCACAGGAGCCGGAGC---GGAAGCTGGAGGCGTTTCTGGT---------------------------------------------------------------------------------------TTGGTGGGAGGAGGCGTCTC------------------------CTTCTTGGGGGAC---CCCTTATCCTCTCCTGCTGGCTT---------------------------------TGGCGGCTCG
droKik1 scf7180000302401:909402-909566 + GATGGTGGCGTTAAGGGGGCC---------------ACTGGTGAAGGAGCCTCTGCTGTGGGAG---------------TTGCAGCTGTCGCTGGAGTCAAAGATGGTGGCGTCACTGGC---------------------------------------------------------------------------------------TTGCTGGGTGGCTGCGTCTCCTTGGCAGTGGGAGC---------------AGGAGCA---GGTGCAGCTTCTGCCACTGGCTT---------------------------------TGGAGTCTCT
droAna3 scaffold_12916:1562499-1562675 + GGCGGTGGCGTCGAGGGGGCT---------------GCTGGCGAAGCCGTCTCTGCTGTTGGTG---------------GTGAAGGGGCAGCTG------------------------------------AAACTTGTGGCGCAACTTGTGCCAC------------------------------CTCAGCGGGAGGGGTTCCTTTCTTAGCAGGAGGAGGCGACTC------------------------TTTCTTAGCTGGA---GGTGGCGACTCTTTCTTTGCTGG---------------------------------AAGAGGTGAT
droBip1 scf7180000396728:224052-224201 + GAAGGGGCTGCAGAAGGGGCT---------------TTGGGTGAAACTTG---------------------------------------------------------------------------------------------------------------------------------CGTCACCTCAGCGGGTGGCGATCCTTTCTTAGCAGGAGGAGGCGTCTTTTTCTTAGCAGGAGGAGGAGACTCTTTCTTAGGAGGA---GGTGGCGACTCTTTCTTAG---T---------------------------------AGGAGGAGGC
dp5 4_group3:1029110-1029358 - GATGGCGGAGTAGCTGGAACC---------------ATCGGCGACGGCGCCTCTGGTGACGGAGGAGCTACTGCAGGAGCAGCTGACGGC---------------GGGGCAGCCACCG------------CAGTTTGTGGTGCAGGAGATGCCACATCTGGTTTGTTTAAAGCAGATACCTTCTGCTCAGCGGGTGGTGTCACCTGTTTGGCTGGTGGCGGTGTCTT------------------------TTGCTTGGGTGAGGCTG------------------CCTTTGGAGTATTCTTTGATTGCTCTAGTTTCTTCTCTGGAGCCGCT
droPer2 scaffold_1:2506530-2506778 - GATGGCGGAGTAGCTGGAACC---------------ATCGGCGACGGCGCCTCTGGTGACGGAGGAGCTACTGCAGGAGCAGCTGACGGC---------------GGGGCAGCCACCG------------CAGTTTGTGGTGCAGGAGATGCCACATCTGGTTTGTTTAAAGCAGATACCTTCTGCTCATCGGGTGGTGACACCTGTTTGGCTGGTGGCGGTGTCTT------------------------TTGCTTGGGTGAGGCTG------------------CCTTTGGAGTATTCTTTGATTGCTCTAGTTTCTTCTCTGGAGCTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GATGGCGGAGTGGAAGGAGCC---------------AGGGGAGATGGCGCCTCAGCAG---GAG---------------TGGCAGGTGCCACCGG---AA---CTGGGGCCGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATTC------------------------CTTCTTGGGTGCA---GACTTCGGATCTTCAATGGCCTT---------------------------------TGGCGCATCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGC.............................................................................................................18479.50318318000
.....................................................................................................................GGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGT...............................................................................................................18113.00138302
.....................................................................................................................GGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGC.............................................................................................................2012.0022000
....................................................................................................................TGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGT...............................................................................................................1911.0011000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGT.............................................................................................................1821.0021010
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGTA............................................................................................................19120.1720101
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGG.............................................................................................................1890.1110001
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGCC............................................................................................................19160.0611000
droSim2
GTTGGCGGAGTGGAAGGTGCC---------------AGGGGAGATGGCGCCTCAGCAG---GAG---------------TGGCAGGTACCACCGG---AA---CTGGGGCAGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATTC------------------------CTTCTTGGGTGCA---GCCTTCGGATCTTCAATGCCCTT---------------------------------TGGCGCATCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGC.............................................................................................................18238.507731105000000012000100
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGT...............................................................................................................1627.501500000020007000600
...............................................................................................................................................................................................................TTTGTGGGTGGTGGT...............................................................................................................1565.83350000000000210001310
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTG..............................................................................................................1715.00500000000004000100
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTG..............................................................................................................1634.3313000000000010000111
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGC.............................................................................................................17112.6429000000000018000902
................................................................................................................................................................................................................TTGTGGGTGGTGGTG..............................................................................................................15141.211700000000008001710
......................................................................................................................GT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTG..............................................................................................................1811.00100000100000000000
....................C---------------AGGGGAGATGGCGCCTCAGCAG---................................................................................................................................................................................................................................................................................2311.00100000000001000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGCA............................................................................................................19190.951802080010005001100
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGAA............................................................................................................1830.33100000000000000100
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGT.............................................................................................................1830.33100010000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGG.............................................................................................................18110.09101000000000000000
dm3
GATGGCGGAGTGGAGGGAGCC---------------AGAGGAGATGGCGCCTCAGCAG---GAG---------------TGGCAGGTGCTACCGG---AA---CTGTTGCCGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATTC------------------------CTTCTTGGGTGCA---GCCTTCGGTTCCTCAATGGCCTT---------------------------------TGGCGCATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................TGTGGGTGGTGGTGATC...........................................................................................................1741925.2577010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016736028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTGGGTGGTGGTGATC...........................................................................................................182648.00129600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329967000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GTGGGTGGTGGTGATC...........................................................................................................1620348.1069620000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014375525000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGATC...........................................................................................................192277.0055400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000180374000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTGGGTGGTGGTGAT............................................................................................................161125.001250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGCA............................................................................................................191893.67168600000000000000000000000300000000000100001001050000000000000000000000000000000000000000000001000012000200000000100000000000000000000000000000912424280000010002000000000000330100000107021000014001010001011000000000800000002252200010100514001002949000000000000000010000000000000000000000002000821720000020013700400011000000010003885832225633144141000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGATC...........................................................................................................20266.50133000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGC.............................................................................................................18650.8330500000000000000000000000000000000000000102000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100170000020000000110000000000000000040000000000001100001500000000010000003184751012020060200000365000000000000000000000000000000000000000000000001000000000000000000000000000000001213001000000
.................................................................................................................................................................................................................TGTGGGTGGTGGTGA.............................................................................................................15635.832150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051164000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTGGGTGGTGGTGA.............................................................................................................16133.003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000924000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTG..............................................................................................................17328.3385000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001353900001000601000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGC.............................................................................................................171525.8738800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118518900320000500012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTGGGTGGTGGTGAT............................................................................................................17115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GTGGGTGGTGGTGAT............................................................................................................15614.6788000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGT...............................................................................................................18213.50270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000020000200100000000000000007232011000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGT.............................................................................................................18511.8059000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000010000440000000000000000000000000000000000000000000000000000002000000010000000000000000163108233000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGAT............................................................................................................18111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGA.............................................................................................................1718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TGGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGT...............................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001112000000000
.................................................................................................................................................................................................................TGTGGGTGGTGGTGAC............................................................................................................16156.4797000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGT...............................................................................................................1636.331900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019
................................................................................................................................................................................................................TTGTGGGTGGTGGTGAC............................................................................................................1725.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGAC............................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GTGGGTGGTGGTGAC............................................................................................................15204.809600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000096000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTGGGTGGTGGTGATT...........................................................................................................1714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTGTGGGTGGTGGTGATT...........................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGA.............................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGAA............................................................................................................1842.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000000000000032110000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTG..............................................................................................................1642.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGCC............................................................................................................19122.08250000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000112000001001000000000000000000000000000000000000000000000000000000000000000000000000000000001700000000000000000000000000000000000000000000000000000000000201000000000000000001021100000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGAT............................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGAA............................................................................................................1922.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000
.....................................................................................................................GGT---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGC.............................................................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTTGTGGGTGGTGGTGCC............................................................................................................18201.402800000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000001020000000000000010041000000000000000000000000000000000000000000000000000000000000100200000000000000000002010000000
.......................................................................................................................T---------------------------------------------------------------------------------------TTTGTGGGTGGTGGTGTA............................................................................................................19121.25150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000006132010000000
............................................................................................................GCCGTCACTGGT---------------------------------------------------------------------------------------TTTGTGGG......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATTC------------------------CTTCTTGGGTGCA---GCCTT.............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AGGTGCTACCGG---AA---CTGTTGCCGTCAC.........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TCGGTTCCTCAATGGCCTT---------------------------------TGGCGCA...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAGTGGAGGGAGCC---------------AGAGGAG..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droEre2
GATGGCGGAGTGGACGGAGCC---------------AAAGGAGATGGCGGCTCAGCTG---GAG---------------TGGCAGGTGCCAACGG---AA---CTGGGGCCGTCACTGGC---------------------------------------------------------------------------------------TTAGTGGGTGGTGGTGATTG------------------------CTTCTTGGATGCA---GCCTTCGGATCTTCAATTGCCTT---------------------------------TGGCGTATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GTTGGCGGCGTGGAGGGAGCC---------------AAAGGAGATGGCGCCTCAACAG---GAG---------------TGGCAGGCGCCAACGG---AA---TTGGGGCCGTCACTGGT---------------------------------------------------------------------------------------TTAGTGGGTGGTGGTGATTC------------------------CTTCTTGGCTGCA---GCCTTAGGATCTTCAATTGCCTT---------------------------------TGGCGCATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GACGGTGGAGTACTGGGGCCCATTGGGGATGGAGCTACTGGAGATGGCGCCTCTGCAG---GAA---------------CTGCAGCTGCCACTGG---AACTGCTGGCGGCGTCACTGGC---------------------------------------------------------------------------------------TTGGTGGGTGGAGGTGTCTC------------------------CTTCTTGGCAGCA---AGTTTTGCATCTACAATTGACTT---------------------------------CGCCGCCTGCSizeHit CountTotal NormTotal
No Reads
droBia1
GAGGGCGGAGTGGAGGGGGCC---------------AGAGGAGATGGCGCCTCTGCAG---GAG---------------TGGCCGAGGCCACTGG---AG---CTGGGGGCGTCACTGGC---------------------------------------------------------------------------------------TTGGCGGGAGGCGGTGTCTC------------------------CTTCTTGGACGAATCAGCAGTCAGATCTTGA----GCTT---------------------------------TGGC-----TSizeHit CountTotal NormTotal
No Reads
droTak1
GA------------GGGAGCC---------------AAGGGGGATGGCGCCTCGGCAG---GAG---------------TGGCCGGAG---CGGG---AA---CTGATGGCGTCTCTGGTTTGGCAGCCTGATCCTGTGGCTTCGGTGGTGC------------------------------------------------------------------CTGAGCCACCTGTGCGTTGGAAAC------------------TTCC---GGTGCTGGCGCCTTGATAGCTTC---------------------------------TGGAGCTGCCSizeHit CountTotal NormTotal
No Reads
droEle1
GTTGGCGGAGTGGAGGGAGCC---------------ACTGGGGAGGGCGGAGCCACAG---GGG---------------TTGTGGAGGCCACTGG---AG---CTGGGGGCGTCACTGGC---------------------------------------------------------------------------------------TTGCCAGGTGGAGATCTCTC------------------------CTTCTTGGGTGAA---GC---------------AGGCTT---------------------------------TGGCGTCTCCSizeHit CountTotal NormTotal
No Reads
droRho1
GATGGTGGCGTGGAGGGGGCC---------------GCTGGGGACGGGCCCTCTGCAG---GAG---------------TTGCAGATGCCACTGG---AG---CTGGGGGCGTCACTGGC---------------------------------------------------------------------------------------TTGGTTGGTGGAGTTGTCTC------------------------CTTCCTGGGAGCA---GCTTTAATTTCTTCAACAGGCTT---------------------------------TGGCGTCTCGSizeHit CountTotal NormTotal
No Reads
droFic1
GACGGAGGAGTGGAGGGGGCC---------------AATGGGGAAGGCGCTTCAGCCG---GAGTGGCGGTGGCCGGAGCCACAGGAGCCGGAGC---GGAAGCTGGAGGCGTTTCTGGT---------------------------------------------------------------------------------------TTGGTGGGAGGAGGCGTCTC------------------------CTTCTTGGGGGAC---CCCTTATCCTCTCCTGCTGGCTT---------------------------------TGGCGGCTCGSizeHit CountTotal NormTotal
No Reads
droKik1
GATGGTGGCGTTAAGGGGGCC---------------ACTGGTGAAGGAGCCTCTGCTGTGGGAG---------------TTGCAGCTGTCGCTGGAGTCAAAGATGGTGGCGTCACTGGC---------------------------------------------------------------------------------------TTGCTGGGTGGCTGCGTCTCCTTGGCAGTGGGAGC---------------AGGAGCA---GGTGCAGCTTCTGCCACTGGCTT---------------------------------TGGAGTCTCTSizeHit CountTotal NormTotal
No Reads
droAna3
GGCGGTGGCGTCGAGGGGGCT---------------GCTGGCGAAGCCGTCTCTGCTGTTGGTG---------------GTGAAGGGGCAGCTG------------------------------------AAACTTGTGGCGCAACTTGTGCCAC------------------------------CTCAGCGGGAGGGGTTCCTTTCTTAGCAGGAGGAGGCGACTC------------------------TTTCTTAGCTGGA---GGTGGCGACTCTTTCTTTGCTGG---------------------------------AAGAGGTGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GAAGGGGCTGCAGAAGGGGCT---------------TTGGGTGAAACTTG---------------------------------------------------------------------------------------------------------------------------------CGTCACCTCAGCGGGTGGCGATCCTTTCTTAGCAGGAGGAGGCGTCTTTTTCTTAGCAGGAGGAGGAGACTCTTTCTTAGGAGGA---GGTGGCGACTCTTTCTTAG---T---------------------------------AGGAGGAGGCSizeHit CountTotal NormTotal
No Reads
dp5
GATGGCGGAGTAGCTGGAACC---------------ATCGGCGACGGCGCCTCTGGTGACGGAGGAGCTACTGCAGGAGCAGCTGACGGC---------------GGGGCAGCCACCG------------CAGTTTGTGGTGCAGGAGATGCCACATCTGGTTTGTTTAAAGCAGATACCTTCTGCTCAGCGGGTGGTGTCACCTGTTTGGCTGGTGGCGGTGTCTT------------------------TTGCTTGGGTGAGGCTG------------------CCTTTGGAGTATTCTTTGATTGCTCTAGTTTCTTCTCTGGAGCCGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GATGGCGGAGTAGCTGGAACC---------------ATCGGCGACGGCGCCTCTGGTGACGGAGGAGCTACTGCAGGAGCAGCTGACGGC---------------GGGGCAGCCACCG------------CAGTTTGTGGTGCAGGAGATGCCACATCTGGTTTGTTTAAAGCAGATACCTTCTGCTCATCGGGTGGTGACACCTGTTTGGCTGGTGGCGGTGTCTT------------------------TTGCTTGGGTGAGGCTG------------------CCTTTGGAGTATTCTTTGATTGCTCTAGTTTCTTCTCTGGAGCTGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/15/2015 at 03:06 PM