ID:

dse_33

 Coordinate:

scaffold_1344:850-913 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.3

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

  1. dse_63  scaffold_1093:3684-3704 +
  2. dse_33  scaffold_1344:892-912 +
  3. dse_65  scaffold_1344:5953-5973 +
  4. dse_64  scaffold_40:23124-23144 +

Sense Strand Reads

ATATCTAACGCTTCTTCAGCAACGTTCCAAATGGCGAGCACAGAAGACAGAAGTTGAAATCGATGATGTCGCTTTTTCGTCTTTTACTACAACGACATCATCAATTTGAACGTCTGTCTTCTGTGCTGTCACCCTGCCACCCCTCAAATGGTCACTAGCTTAAT

***********************************.(((((((((((((((.(((.((((.((((((((((.....................)))))))))).)))).))).))))))))))))))).************************************ 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 V113

male body		 V115

head

 M054

female body
..................................................AAGTTGAAATCGATGATGTCGC............................................................................................ 22 0 1 1390.00 1390 1276 78 35 1
...................................................AGTTGAAATCGATGATGTCGCT........................................................................................... 22 0 1 316.00 316 260 25 31 0
...................................................AGTTGAAATCGATGATGTCGC............................................................................................ 21 0 1 88.00 88 44 17 27 0
..................................................AAGTTGAAATCGATGATGTCGCT........................................................................................... 23 0 1 31.00 31 30 0 1 0
............................................................................................CGACATCATCAATTTGAACGT................................................... 21 0 4 22.25 89 42 29 18 0
....................................................GTTGAAATCGATGATGTCGCT........................................................................................... 21 0 1 22.00 22 15 5 2 0
..................................................AAGTTGAAATCGATGATGTCG............................................................................................. 21 0 4 11.00 44 19 19 6 0
..................................................AGGTTGAAATCGATGATGTCGC............................................................................................ 22 1 1 8.00 8 6 1 1 0
.................................................CAAGTTGAAATCGATGATGTCGC............................................................................................ 23 1 1 8.00 8 7 1 0 0
...................................................AGTTGAAATCGATGATGTCGCTT.......................................................................................... 23 0 1 6.00 6 2 1 2 1
...................................................AGTTGAAATCGATGATGTCGCTTT......................................................................................... 24 0 1 5.00 5 1 4 0 0
..................................................AAGTTGAAATCGATGATGCCGC............................................................................................ 22 1 1 5.00 5 4 0 1 0
.................................................GAAGTTGAAATCGATGATGTCG............................................................................................. 22 0 4 3.50 14 13 1 0 0
..................................................AAGTTGAAATCGATGGTGTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTGAAATCGATGATGTCAC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTGAAATCGATGACGTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTGGAATCGATGATGTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTGAAATCGATGATGTTGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTGAAATCGATAATGTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
....................................................GTTGAAATCGATGATGTCGC............................................................................................ 20 0 1 3.00 3 2 0 1 0
..................................................AAGCTGAAATCGATGATGTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTAAAATCGATGATGTCGC............................................................................................ 22 1 1 3.00 3 2 0 1 0
...................................................GGTTGAAATCGATGATGTCGC............................................................................................ 21 1 1 3.00 3 0 0 3 0
..................................................AAGTTGAAATCGATGATCTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
...................................................GGTTGAAATCGATGATGTCGCT........................................................................................... 22 1 1 3.00 3 0 1 2 0
....................................................GTTGAAATCGATGATGTCGCTT.......................................................................................... 22 0 1 3.00 3 0 1 2 0
...................................................GGTTGGAATCGATGATGTCGC............................................................................................ 21 2 1 3.00 3 0 0 3 0
..................................................AAGTTGAGATCGATGATGTCGC............................................................................................ 22 1 1 3.00 3 3 0 0 0
..................................................AAGTTGAAATCGATGATGTC.............................................................................................. 20 0 4 2.50 10 4 5 1 0
................................................AGAAGTTGAAATCGATGATGTC.............................................................................................. 22 0 4 2.50 10 8 1 1 0
............................................................................................CGACATCATCAATTTGAACGTC.................................................. 22 0 4 2.50 10 9 1 0 0
..................................................AAGTTGAAATCGATGATGTCGCC........................................................................................... 23 1 1 2.00 2 2 0 0 0
.................................................GAAGTTGAAATCGATGATGTCGC............................................................................................ 23 0 1 2.00 2 2 0 0 0
..................................................ACGTTGAAATCGATGATGTCGC............................................................................................ 22 1 1 2.00 2 2 0 0 0
..................................................AAGTTGAAATCGATGATTTCGC............................................................................................ 22 1 1 2.00 2 1 1 0 0
..................................................AAGTTGAAATTGATGATGTCGC............................................................................................ 22 1 1 2.00 2 2 0 0 0
...................................................AGTTGAAATTGATGATGTCGCT........................................................................................... 22 1 1 2.00 2 2 0 0 0
..................................................GAGTTGAAATCGATGATGTCGC............................................................................................ 22 1 1 2.00 2 1 1 0 0
..................................................AAGTTGAAATCGATGATGTCCC............................................................................................ 22 1 1 2.00 2 2 0 0 0
...................................................ATTTGAAATAGATGATGTCGC............................................................................................ 21 2 1 2.00 2 0 2 0 0
....................................................GTTGGAATCGATGATGTCGC............................................................................................ 20 1 1 2.00 2 0 0 2 0
..................................................AAGTTGAAATAGATGATGTCGC............................................................................................ 22 1 1 2.00 2 1 0 1 0
...................................................AGTTGAAATAGATGATGTCGCT........................................................................................... 22 1 1 1.00 1 0 1 0 0
..................................................AGGTTGAAATCGATGATGTCGCT........................................................................................... 23 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAAACGATGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTAGCT........................................................................................... 22 1 1 1.00 1 0 1 0 0
...................................................AGTTGAAATCGACGATGTCGCT........................................................................................... 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTCTC............................................................................................ 21 1 1 1.00 1 0 1 0 0
..................................................AAGTTGAAATCGCTGATGTCGCT........................................................................................... 23 1 1 1.00 1 0 1 0 0
...................................................AGTTGAGATCGATGATGTCGC............................................................................................ 21 1 1 1.00 1 0 1 0 0
...................................................AGTTGAAATCGATGATGCCGCT........................................................................................... 22 1 1 1.00 1 0 0 1 0
....................................................GTTGAAATCGATGATGTCGCTTTTT....................................................................................... 25 0 1 1.00 1 1 0 0 0
...................................................AGTCGAAATCGATGATGTCGCT........................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................AACTTGAAATCGATGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTCGCC........................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTCAAATCGATGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGGAATCGATGATGTCGCT........................................................................................... 22 1 1 1.00 1 0 0 1 0
..................................................CAGTTGAAATCGATGATGTCGCT........................................................................................... 23 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGATGCTGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCTATGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................AAGTCGAAATCGATGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGAAATCGATGACGTCGCT........................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGGTGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................AAGTAGAAATCGATGATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGATCATGTCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................CAGTTGAAATCGATGATGTCGC............................................................................................ 22 1 1 1.00 1 0 1 0 0
..................................................AAGTTGAAATCGATGATATCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGATGATGGCGC............................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGAAAACGATGATGTCGCT........................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGATGATGT............................................................................................... 19 0 4 1.00 4 3 0 1 0
...................................................TGTTGAAATCGATGATGTCGCT........................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAGTCGATGAAGTCGC............................................................................................ 22 2 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGATGATGACGC............................................................................................ 22 1 1 1.00 1 0 1 0 0
.................................................CAAGTTGAAATCGATGATATCGC............................................................................................ 23 2 1 1.00 1 1 0 0 0
..................................................AGGTTGAAATCGATGATGCCGC............................................................................................ 22 2 1 1.00 1 0 1 0 0
..................................................AACTTGTAATCGATGATGTCGC............................................................................................ 22 2 1 1.00 1 1 0 0 0
...................................................AGTTAAAATCGATGATGTCGC............................................................................................ 21 1 1 1.00 1 1 0 0 0
..................................................AAGTTGAAATCGATGATGTCGCA........................................................................................... 23 1 1 1.00 1 1 0 0 0
...................................................CGTTGAAATCGATGATGTCGCT........................................................................................... 22 1 1 1.00 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTCGCTTTTTT...................................................................................... 27 1 1 1.00 1 0 1 0 0
.................................................GAAGTTGAAATCGATGATGTC.............................................................................................. 21 0 4 0.50 2 2 0 0 0
.............................................................................................GACATCATCAATTTGAACGT................................................... 20 0 4 0.50 2 0 2 0 0
............................................................................................CGACATCATCAATTTGAACG.................................................... 20 0 4 0.50 2 2 0 0 0
...................................................................................TTACTACAACGCTATCATCAC............................................................ 21 3 6 0.50 3 0 0 0 3
...................................................AGTTGAAATCGATGATGTCG............................................................................................. 20 0 4 0.50 2 1 0 1 0
...................................................GGTTGAAATCGATGATGTAGC............................................................................................ 21 2 2 0.50 1 0 0 1 0
..........................................................................................AACGACATCATCAATTTGAACGT................................................... 23 0 4 0.50 2 2 0 0 0
...................................................AGTTGAGATCGATGCTGTCGC............................................................................................ 21 2 2 0.50 1 1 0 0 0
.......................................................................................................................TCTCTGATGTCACACTGCCA......................... 20 3 7 0.29 2 0 0 0 2
.................................................CAAGTTGAAATCGATGATGTCG............................................................................................. 22 1 4 0.25 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTCGAT........................................................................................... 22 1 4 0.25 1 1 0 0 0
..................................................AAGTTGAAATCGATGATGTTG............................................................................................. 21 1 4 0.25 1 1 0 0 0
.............................................................................................GACATCATCAATTTGAACGTCT................................................. 22 0 4 0.25 1 0 1 0 0
...............................................................................................CATCATCAATTTGAACGTCTGT............................................... 22 0 4 0.25 1 1 0 0 0
.................................................GAAGTTGAAATCGATGTTGTCG............................................................................................. 22 1 4 0.25 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTAGA............................................................................................ 21 2 4 0.25 1 0 0 1 0
.............................................................................................GACATCATCAATTTGAACGTC.................................................. 21 0 4 0.25 1 1 0 0 0
..................................................AAGTTGAAATCGATGATGTT.............................................................................................. 20 1 4 0.25 1 0 1 0 0
............................................................................................CGACATCATCAATTTGAACGTT.................................................. 22 1 4 0.25 1 1 0 0 0
...........................................................................................ACGACATCATCAATTTGAACG.................................................... 21 0 4 0.25 1 0 0 1 0
..................................................AAGTTGAAATCGATGATGACG............................................................................................. 21 1 4 0.25 1 0 1 0 0
............................................................................................CAACATCATCAATTTGAACGTC.................................................. 22 1 4 0.25 1 1 0 0 0
...................................................AGTTGAAATCGATGATGTC.............................................................................................. 19 0 4 0.25 1 1 0 0 0
...................................................GGTTGAAATCGATGATGCCG............................................................................................. 20 2 4 0.25 1 0 0 1 0
..................................................AAGTTGAAATCGATGATGTCTA............................................................................................ 22 2 4 0.25 1 1 0 0 0
............................................................................................CGACATCGTCAATTTGAACGT................................................... 21 1 4 0.25 1 0 1 0 0
................................................AGAAGTTGAAATCGATGATGT............................................................................................... 21 0 4 0.25 1 0 0 1 0
...........................................................................................ACGACATCATCAATTTGAACGT................................................... 22 0 4 0.25 1 1 0 0 0
.................................................CAAGTTGAAATCGATGATGTC.............................................................................................. 21 1 4 0.25 1 0 1 0 0
..........................................................................................AACGACATCATCAATTTGAACG.................................................... 22 0 4 0.25 1 1 0 0 0
...................................................................................TTACTACAACGCTATCATCA............................................................. 20 2 5 0.20 1 0 0 0 1
...................................................GGTTGAAATCGATGATGTC.............................................................................................. 19 1 5 0.20 1 0 0 1 0
..............TTCAGCAACGTTCCAAATGGCGAG.............................................................................................................................. 24 0 7 0.14 1 1 0 0 0
.........................................................................TTTACGTCTTTGACTACCAC....................................................................... 20 3 9 0.11 1 0 0 0 1
.......................................................................................................................TCTCTGATGTCACACTGCC.......................... 19 3 20 0.10 2 0 0 0 2
.........................................AAAAGACAGAAGGTGAAAT........................................................................................................ 19 2 12 0.08 1 0 0 0 1
...............................TGTGGAGAACAGAAGACAGA................................................................................................................. 20 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

TATAGATTGCGAAGAAGTCGTTGCAAGGTTTACCGCTCGTGTCTTCTGTCTTCAACTTTAGCTACTACAGCGAAAAAGCAGAAAATGATGTTGCTGTAGTAGTTAAACTTGCAGACAGAAGACACGACAGTGGGACGGTGGGGAGTTTACCAGTGATCGAATTA

************************************.(((((((((((((((.(((.((((.((((((((((.....................)))))))))).)))).))).))))))))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total V113

male body		 M054

female body

 V115

head

 V114

embryo
...................................................................................AATGATGTTGCGATAGTAGTG............................................................ 21 3 6 7.00 42 32 8 2 0
...................................................................................AATGATGTTGCGATAGTAGT............................................................. 20 2 5 1.80 9 6 3 0 0
...................................................................................AATGATGTTGCGATAGTAG.............................................................. 19 2 7 1.00 7 7 0 0 0
..........................................................................................TTGCTGTAGTAGTTAAACTTGC.................................................... 22 0 4 0.75 3 1 0 1 1
....................................................................................ATGATGTTGCGATAGTAG.............................................................. 18 2 11 0.64 7 0 3 4 0
..................................................................................AAATGATGTTGCGATAGTAGTG............................................................ 22 3 5 0.60 3 3 0 0 0
.................................................................................AAAATGATGTTGCGATAGTAGTG............................................................ 23 3 4 0.50 2 2 0 0 0
....................................................................................ATGATGTTGCGATAGTAGT............................................................. 19 2 6 0.33 2 1 1 0 0
..........................................................................................TTGCTGTAGTAGTTAAACTTG..................................................... 21 0 4 0.25 1 0 0 0 1
....................................................................................ATGATGTTGCGATAGTAGTGA........................................................... 21 3 5 0.20 1 1 0 0 0
..................................................................................CAATGATGTTGCGATAGTAGT............................................................. 21 3 7 0.14 1 0 0 1 0
..........................................................................................TTGCTGTAGTAGTTTAAGTTG..................................................... 21 2 8 0.13 1 0 0 0 1
....................................................................................................................TGAAGACGCGACAGTGGGC............................. 19 3 9 0.11 1 0 1 0 0
...................................................................................ACTGATGTTGCGATAGTAGT............................................................. 20 3 11 0.09 1 1 0 0 0
.........................................................................................TTTGCTGTAGTAGTTAAACTTGC.................................................... 23 1 14 0.07 1 1 0 0 0
........................................................................................CGTTGCTGAAGTAGTTTAA......................................................... 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1344:800-963 + dse_33 confident ATATCTAACGCTT----CTTCAGCAACGTTCCAAATGGCGAGCACAG--------------------AAGACAGAAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------TTTTCGTCTTTTACTACAACGACATCATCAATTTGAACGTCTGTCTTCTGTGCTGTC-ACCCTGCCACC--------CCTCA---------------------A--ATGGTC---AC------------------------------T------AGCTTAAT
droSim2 node_110930:30403-30566 - dsi_32478 AAAACTGCCACTGGAATCTTCAATAGAGCTGTCGCT----------AAACTTTGCGTTCTACCCAAACAGG--------------TTG---ATGTTGTCAGCCCGTGTCCTCCAACGGGGG---GAGGATGTTTAGTTATGCAGCCAGCA---------------GCC--------------A-------------------------------------------------------G-----------CAGCAGCTCATCATAA------------ATT---TGAG-------------TTA------------------T-----TTT---ATTTTTTAT
dm3 chr3LHet:1368859-1368981 - dme_440 AAAACTGCCACTGGAATCTTCAATAGAGCCGTCGCT----------AAACTTTGCGTTCTACCCAAACAGG--------------ATG---ATGTCAG--------------CAAC-GGGG---GAGGATGTTTGGTTTAGCAGCC------------AACAGCAGCT------------------------------------------------------------------------------------------CATC-------------------------------------------------------------------------ATAATCAC
droEre2 scaffold_4845:2300850-2300987 - AGGACACCAACAGCATTGACTAAGCGGGCAGTGAAT----------AAGCTGTGTCTTCTTCCCCTTAAGG--------------ATG---CGGTTGAAAGCC------------CGAGGG---GAGTATGTCGGGTCTCGCAGCC------------GCCAGCAG---------------------------------------------------------------------------------------CATCTAAGTT----------------------------------------T------------------ATAT--C-C---AGTTGTTTT
droYak3 v2_chr2h_random_003:96096-96220 - AAAACTGC------AATATTCAATAGAGCCGTCGCT----------AAACTTTGCGTTCTACCCAAACAGG--------------GTG---ATGTTGTCAGCCCCTGTTCTCCAATGGGGG---GAA-ATGAA---------------------------------------------------------------------------------------------------------------------------------ATAA------------ATT---TCAT-------------TTA------------------T-----TTTAT-TTTTATAAT
droEug1 scf7180000409850:2561-2596 + CTACCTCTCGTTG----CTTCAGGAGCGGAACAAATGGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301390:47955-48116 - AAGACAGCATCAGGAGTAACAAAGCGAGCAGTAAAC----------AAGCTGTATCTACTTCCCCTTACGT--------------ATG---ATGTTGAAACACA--GGATTCCAACGTGGG---GAGTATTTCGGGTTACGCAGCC------------GC-AGCAGCT------------------------------------------------------------------------------------------AACTA-----------------------------------------ACGTCTTAATTCGATCTCT-----TATATTAATTGCATC
droTak1 scf7180000410413:1122-1280 - AAGACAGCGTCAGGAGTGACCAAGCGAGCAGTGAAC----------AAGCTATGTCTGCTGCCCCTTAAGG--------------ATG---ATGTTGAAACCCA--GGCTTCCAACGGGGG---GAGTATGTCGGGTCACGCAGCC------------GC-AGCAGCT------------------------------------------------------------------------------------------AATTA-----------------------------------------ACTTGTAAATCCGTACTCT-----TAT---ATCAATTGC
droEle1 scf7180000489411:54395-54534 - TGGACAGCTACAGGTCCTACCAAAAGAGCCGTCACC----------AAACTAACCGCTCTGCGA---C-----------------------TGGTTGGAACTGTGCCTCTTCCAACGGGGG---CTGTATGTTTAGAGCAG---AC---------------------------------------------------------------------------------------------AGCCAGCACCT--------AGTCA---------------------A--ATGCTCAT---------------------------------A-G---ATGTGCGCT
droRho1 scf7180000764625:1998-2123 + GTATCTTACCCTT----CTGCAACAACGCACCAAATGGCGGTCTCCT--------------------GAACGAATGCTGAAGGTC------------AACGACG--TAGTTTTGATAAAGG---ATGAAAATCTACCTCCCATGCG------------------------------------------------------------------------------------------------------------------------------------------GT--GGCCCTTAGCT------------------------------------AGGGTGAC
droFic1 scf7180000453098:12124-12269 - AAGACAACATCAGGAGTGACGATATGAGCAGTTAAT----------AAGCTGTGTCTGCTGCCCCTTAAGG--------------ATG---CTGTTGAAAGCCA--GGCTTCCAACGGGGG---GAGTATGTCGGGTCATCCAGCC------------GC-AGCAGAT------------------------------------------------------------------------------------------ATTTA-----------------------GG-------------TTC------------------T-----CTT---AATGCTAGC
droKik1 scf7180000299776:7008-7165 - AAGACCGCCACTGGCCTCATCAATCGCGCAGTTGCT----------AAGCTGTGTGTGCTGCCGAAGCAGG--------------ATG---AAGTTGAAAGCCCTTGTCTTCCAACGGGGG---GAGAATGTCTGGTTATGCAGCCCGCA---------------CCT--------------G-------------------------------------------------------------GTGACCCAGCGGCTAAACA-----ACAACAATAAA------------------------------------------------------------TTTG
droAna3 scaffold_10393:1796-1955 - AGAACCGCTTCTGGAACTACCAAGCGCGCAGTGACC----------AAGCTTTGCCTATTGCCCCTTAAGG--------------ATG---AAGTTGAAGGACA--GGCCTCAACTGGGGG---GAGTATGTCGGGTCCGGCAGTA------------GC-C---ACTG----CATAAATTCAA-----------------------------------------------------------------------------TATAA------------ATG---TAA-------------CATA------------------T-----ATA---AGTGAACAC
droBip1 scf7180000393141:4826-4992 - AAAACCTCATCTGGAATTACCAAGCGAGCAGTGACT----------AAGCTGTGCCTTTTGCCCCTTAAGG--------------ATG---AAGTTGGAGTAGA--AGCCCCAACTGGGGG---GAGAATGTCGGGTCAAGCAGCA------------A---GCAACT--------------A----------------------------------------------------------------------------ATTT-AAACACAACAAT-TAATA-A----------------------------TTAACTGA--T---GTTTT---GCTGGTCGC
dp5 Unknown_singleton_84:1827-2004 - dps_3849 AAAGA-------GGCCTTTTCAAGAGGGCCGTTGGA----------AAAGTTGCGGTTCTGCCCCTTCAGG--------------ATGGATCTGTTGAAAGTCTTTGCCTTCCAACGGGGG---GTGAATGTTCGGAGCAG---AACGCAGCCGATTAGC-C---GCTT----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----TTT---GTTTGTTAC
droPer2 scaffold_102:53448-53632 - CGCACTCAAAGAGGCCTTTTCAAGAGGGCCGTTGGA----------AAAATAGCGGTTCTGCCCCTTCAGG--------------ATGGATCTGTTGAAAGCCTTTGCCTTCCAACGGGGG---GTGAATGTTTGGAGCAGAACCC---AGCCGATTAGC-T---GCTT----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----TTT---GTTTGTTAC
droWil2 scf2_1100000009085:428-498 + GTACCTCAAGGAG----CTTCACAAACGGCACAAGTGGAAATCACCG--------------------ACTCGCAGAATCCAGACC------------GGCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCG
droVir3 scaffold_12910:40774-40940 - dvi_24650 A---CCGCAACAGGAGAAACGAGAAGAGCTGCAAAC----------AAGCTATGCCTATTGCCCATCAGGG--------------AAT---CTGTTGAAAGCCCATGCCTTCCAACAGGGG---GAGAATGTCTGGTTATGCAGCC------------AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------G---------------------CATCTTAATT-------T-----TAT-C-TTATAATAC
droMoj3 scaffold_6346:42133-42294 - AAAACTGAAGCTGGCGAGATTAGAAGAGCTACAAAT----------AAGCTGTGCTTGCTGCCCCTTAAGG--------------ATT---CTGTTGAAGACTA--AGTCTTCAACGGGGG---GAGGATGTTGGGCTCAGCAATC------------AT-CGC----------T------TCATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCATA---------------------G---------------------A----------------A-----T-A---TGTTATCAT
droGri2 scaffold_14983:107158-107261 + GTATCTCACACTC----CTCTAACAGCGTACCAAACGGAAA-------------------------------------------------------------------TCTCCAGCAGTAGTAGGGAAATGGG-GATTCTATGACA------------GGAAGCAGGTTATTGCT--------------------------------------------------------------------------------------------------------------------------------T------------------T-----TTT---GATT-TTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
ATATCTAACGCTT----CTTCAGCAACGTTCCAAATGGCGAGCACAG--------------------AAGACAGAAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------TTTTCGTCTTTTACTACAACGACATCATCAATTTGAACGTCTGTCTTCTGTGCTGTC-ACCCTGCCACC--------CCTCA---------------------A--ATGGTC---AC------------------------------T------AGCTTAATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGC.........................................................................................................................................................................2211390.001390178127635
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------..................................................................................................................................................................221316.0031602526031
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCGC.........................................................................................................................................................................21188.00880174427
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------..................................................................................................................................................................23131.003100301
........................................................................................................................................................................................................CGACATCATCAATTTGAACGT..........................................................................................................................21422.25890294218
............................................................................GTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------..................................................................................................................................................................21122.002205152
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TCG..........................................................................................................................................................................21411.0044019196
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------T.................................................................................................................................................................2316.0061122
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------TT................................................................................................................................................................2415.0050410
.........................................................................GAAGTTGAAATC------------GATGATG------------------------------------------------------------------TCG..........................................................................................................................................................................2243.501401130
............................................................................GTTGAAATC------------GATGATG------------------------------------------------------------------TCGC.........................................................................................................................................................................2013.0030021
............................................................................GTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------T.................................................................................................................................................................2213.0030102
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TC...........................................................................................................................................................................2042.50100541
........................................................................AGAAGTTGAAATC------------GATGATG------------------------------------------------------------------TC...........................................................................................................................................................................2242.50100181
........................................................................................................................................................................................................CGACATCATCAATTTGAACGTC.........................................................................................................................2242.50100190
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCC------..................................................................................................................................................................2312.0020020
.........................................................................GAAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGC.........................................................................................................................................................................2312.0020020
............................................................................GTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------TTTT..............................................................................................................................................................2511.0010010
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCC------..................................................................................................................................................................2211.0010010
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------T............................................................................................................................................................................1941.0040031
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCA------..................................................................................................................................................................2311.0010010
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCGCT------TTTTT.............................................................................................................................................................2711.0010100
.........................................................................GAAGTTGAAATC------------GATGATG------------------------------------------------------------------TC...........................................................................................................................................................................2140.5020020
.........................................................................................................................................................................................................GACATCATCAATTTGAACGT..........................................................................................................................2040.5020200
........................................................................................................................................................................................................CGACATCATCAATTTGAACG...........................................................................................................................2040.5020020
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TCG..........................................................................................................................................................................2040.5020011
......................................................................................................................................................................................................AACGACATCATCAATTTGAACGT..........................................................................................................................2340.5020020
.........................................................................................................................................................................................................GACATCATCAATTTGAACGTCT........................................................................................................................2240.2510100
...........................................................................................................................................................................................................CATCATCAATTTGAACGTCTGT......................................................................................................................2240.2510010
.........................................................................................................................................................................................................GACATCATCAATTTGAACGTC.........................................................................................................................2140.2510010
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TT...........................................................................................................................................................................2040.2510100
........................................................................................................................................................................................................CGACATCATCAATTTGAACGTT.........................................................................................................................2240.2510010
.......................................................................................................................................................................................................ACGACATCATCAATTTGAACG...........................................................................................................................2140.2510001
...........................................................................AGTTGAAATC------------GATGATG------------------------------------------------------------------TC...........................................................................................................................................................................1940.2510010
..........................................................................AAGTTGAAATC------------GATGATG------------------------------------------------------------------TCTA.........................................................................................................................................................................2240.2510010
........................................................................AGAAGTTGAAATC------------GATGATG------------------------------------------------------------------T............................................................................................................................................................................2140.2510001
.......................................................................................................................................................................................................ACGACATCATCAATTTGAACGT..........................................................................................................................2240.2510010
......................................................................................................................................................................................................AACGACATCATCAATTTGAACG...........................................................................................................................2240.2510010
..................TTCAGCAACGTTCCAAATGGCGAG.............................................................................................................................................................................................................................................................................................................2470.1410010
droSim2
AAAACTGCCACTGGAATCTTCAATAGAGCTGTCGCT----------AAACTTTGCGTTCTACCCAAACAGG--------------TTG---ATGTTGTCAGCCCGTGTCCTCCAACGGGGG---GAGGATGTTTAGTTATGCAGCCAGCA---------------GCC--------------A-------------------------------------------------------G-----------CAGCAGCTCATCATAA------------ATT---TGAG-------------TTA------------------T-----TTT---ATTTTTTATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........TGGAATCTTCAATAGAGCTGTCGCT----------.........................................................................................................................................................................................................................................................................................................25370.33211000200101672396120000
..................................................TTTGCGTTCTACCCAAACAGG--------------TTG---A...........................................................................................................................................................................................................................................................25239.007800000033261531000000
...........TGGAATCTTCAATAGAGCTGTCGC....................................................................................................................................................................................................................................................................................................................24312.6738000100132179050000
...........TGGAATCTTCAATAGAGCTGTCGCT----------A........................................................................................................................................................................................................................................................................................................2638.332500000363561010000
...........TGGAATCTTCAATAGAGCTGTCGCT----------AAAC.....................................................................................................................................................................................................................................................................................................2934.001200000025120020000
...............................................................................................TGTCAGCCCGTGTCCTCCAACGGGGG---GA.........................................................................................................................................................................................................................2833.671100010082000000000
...........TGGAATCTTCAATAGAGCTGTCGCT----------AAA......................................................................................................................................................................................................................................................................................................2832.67800000022130000000
...........TGGAATCTTCAATAGAGCTGTCGCT----------AAACT....................................................................................................................................................................................................................................................................................................3032.67800000080000000000
...........TGGAATCTTCAATAGAGCTGTCGCT----------AA.......................................................................................................................................................................................................................................................................................................2732.33700000000000070000
....................................................TGCGTTCTACCCAAACAGG--------------TTG---ATGT........................................................................................................................................................................................................................................................2622.00400000000004000000
.................................................CTTTGCGTTCTACCCAAACAGG--------------TTG---A...........................................................................................................................................................................................................................................................2622.00400000021010000000
....................................................TGCGTTCTACCCAAACAGG--------------TTG---ATG.........................................................................................................................................................................................................................................................2522.00400000010003000000
..............................................................................................TTGTCAGCCCGTGTCCTCCAACGGGGG---G..........................................................................................................................................................................................................................2831.67500010020002000000
...................................................TTGCGTTCTACCCAAACAGG--------------TTG---A...........................................................................................................................................................................................................................................................2421.50300000001110000000
.........................................................TCTACCCAAACAGG--------------TTG---ATGTTGTC....................................................................................................................................................................................................................................................2521.50300000000003000000
...............................................................................................TGTCAGCCCGTGTCCTCCAACGGGGG---G..........................................................................................................................................................................................................................2731.33400000021100000000
..............................................................................................TTGTCAGCCCGTGTCCTCCAACGGGGG---GA.........................................................................................................................................................................................................................2931.33400000040000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------TTG---ATG.........................................................................................................................................................................................................................................................2721.00200000000101000000
.................................................................................................................AACGGGGG---GAGGATGTTTAGTTATGCA........................................................................................................................................................................................................2721.00200000000000020000
...........................................................TACCCAAACAGG--------------TTG---ATGTTGTCAGCC................................................................................................................................................................................................................................................2721.00200010010000000000
...........TGGAATCTTCAATAGAGCTGTC......................................................................................................................................................................................................................................................................................................................2231.00300000000111000000
..............................................................................................TTGTCAGCCCGTGTCCTCCAACGGGG...............................................................................................................................................................................................................................2631.00300000030000000000
...........TGGAATCTTCAATAGAGCTGTCGCT----------TT.......................................................................................................................................................................................................................................................................................................2731.00300000020100000000
...................................................................................................AGCCCGTGTCCTCCAACGGGGG---GA.........................................................................................................................................................................................................................2431.00300000002010000000
...................................................TTGCGTTCTACCCAAACAGG--------------TTG---ATG.........................................................................................................................................................................................................................................................2621.00200000000002000000
...........TGGAATCTTCAATAGAGCTGTCG.....................................................................................................................................................................................................................................................................................................................2331.00300000000101010000
........................................................TTCTACCCAAACAGG--------------TTG---ATGTTGTC....................................................................................................................................................................................................................................................2621.00200000000002000000
.................................................................AACAGG--------------TTG---ATGTTGTCAG..................................................................................................................................................................................................................................................1921.00200002000000000000
...............................................................................................TGTCAGCCCGTGTCCTCCAACGGGGG---...........................................................................................................................................................................................................................2631.00300010001100000000
...........TGGAATCTTCAATAGAGCTGTCGAC----------T........................................................................................................................................................................................................................................................................................................2630.67200000000000020000
..............................................................................................TTGTCAGCCCGTGTCCTCCAACGGGGG---...........................................................................................................................................................................................................................2730.67200000011000000000
.....................AATAGAGCTGTCGCT----------AAACTTTGCG...............................................................................................................................................................................................................................................................................................2530.67200000000200000000
.......................TAGAGCTGTCGCT----------AAACTTTGCGTTC............................................................................................................................................................................................................................................................................................2630.67200000000002000000
............GGAATCTTCAATAGAGCTGTCGCT----------.........................................................................................................................................................................................................................................................................................................2430.67200000002000000000
............................................................................................TGTTGTCAGCCCGTGTCCTCCAACGGGGG---...........................................................................................................................................................................................................................2930.67200000011000000000
................TCTTCAATAGAGCTGTCGCT----------AAACTT...................................................................................................................................................................................................................................................................................................2630.67200000000110000000
.................................................................................................TCAGCCCGTGTCCTCCAACGGGGG---GA.........................................................................................................................................................................................................................2630.67200010010000000000
...................................T----------AAACTTTGCGTTCTACCCAAACAGG--------------T.................................................................................................................................................................................................................................................................2720.50100000010000000000
............................................................................................................................GAGGATGTTTAGTTATGCAGCCAGCA---------------GCC--------------.................................................................................................................................................................2920.50100000000010000000
............................................................................................................................GAGGATGTTTAGTTATGCAGCCAGC..................................................................................................................................................................................................2520.50100000000010000000
............................................................................................TGTTGTCAGCCCGTGTCCTCCAAC...................................................................................................................................................................................................................................2460.50300000000201000000
............................................................ACCCAAACAGG--------------TTG---ATGTTGTC....................................................................................................................................................................................................................................................2220.50100000000001000000
........................................................................................................................G---GAGGATGTTTAGTTATGCAGCCAGCA---------------..................................................................................................................................................................................2720.50100000000000010000
.......................................................GTTCTACCCAAACAGG--------------TTG---ATGTTGTC....................................................................................................................................................................................................................................................2720.50100000000001000000
.............................................................CCCAAACAGG--------------TTG---ATGT........................................................................................................................................................................................................................................................1720.50100000000001000000
....................................................TGCGTTCTACCCAAACAGG--------------TT................................................................................................................................................................................................................................................................2120.50100000000001000000
..................................................TTTGCGTTCTACCCAAACAGG--------------T.................................................................................................................................................................................................................................................................2220.50100000010000000000
...........................................................TACCCAAACAGG--------------TTG---ATGTTGTCAG..................................................................................................................................................................................................................................................2520.50100000000001000000
..................................CT----------AAACTTTGCGTTCTACCCAAACAGG--------------T.................................................................................................................................................................................................................................................................2820.50100000000001000000
...........................................................TACCCAAACAGG--------------TTG---ATGTTGTC....................................................................................................................................................................................................................................................2320.50100000000001000000
............................................................................................TGTTGTCAGCCCGTGTCCTCCAA....................................................................................................................................................................................................................................2360.50300000000300000000
...........................................................TACCCAAACAGG--------------TTG---ATGT........................................................................................................................................................................................................................................................1920.50100000000001000000
..................................................TTTGCGTTCTACCCAAACAGG--------------TTG---ATGT........................................................................................................................................................................................................................................................2820.50100000010000000000
.........................................................TCTACCCAAACAGG--------------TTG---ATGTTGTCAGC.................................................................................................................................................................................................................................................2820.50100000000100000000
...........TGGAATCTTCAATAGAGC..........................................................................................................................................................................................................................................................................................................................1880.38300000000003000000
...................................................................................................AGCCCGTGTCCTCCAACGGGGG---GT.........................................................................................................................................................................................................................2430.33100000000001000000
.............................................................................................GTTGTCAGCCCGTGTCCTCCAACGGGG...............................................................................................................................................................................................................................2730.33100000001000000000
.....TGCCACTGGAATCTTCAATAGAGCTG........................................................................................................................................................................................................................................................................................................................2630.33100000000001000000
.....TGCCACTGGAATCTTCAATAGAGCTGT.......................................................................................................................................................................................................................................................................................................................2730.33100000000001000000
.................................................................................................TCAGCCCGTGTCCTCCAACGGGGG---G..........................................................................................................................................................................................................................2530.33100000000100000000
.................................................................................................TCAGCCCGTGTCCTCCAACGGGGG---GAGG.......................................................................................................................................................................................................................2830.33100000000001000000
...................................................................................................AGCCCGTGTCCTCCAACGGGGG---GAGGA......................................................................................................................................................................................................................2730.33100000010000000000
................TCTTCAATAGAGCTGTCGCT----------AAACT....................................................................................................................................................................................................................................................................................................2530.33100000001000000000
...........TGGAATCTTCAATAGAGCTGTCGA....................................................................................................................................................................................................................................................................................................................2430.33100000000000010000
.................................................................................................TCAGCCCGTGTCCTCCAACGGGGG---GAGGAAA....................................................................................................................................................................................................................3130.33100000010000000000
........CACTGGAATCTTCAATAGAGCTGTCGCT----------AA.......................................................................................................................................................................................................................................................................................................3030.33100000010000000000
..................TTCAATAGAGCTGTCGCT----------AAACTT...................................................................................................................................................................................................................................................................................................2430.33100000001000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------..................................................................................................................................................................................................................................................................2160.33200000010100000000
...............................................................................................TGTCAGCCCGTGTCCTCCAACGGGG...............................................................................................................................................................................................................................2530.33100000010000000000
...............................................................................................TGTCAGCCCGTGTCCTCCAACGGGGG---GAA........................................................................................................................................................................................................................2930.33100000000010000000
......GCCACTGGAATCTTCAATAGAGCTGTC......................................................................................................................................................................................................................................................................................................................2730.33100000000001000000
...........TGGAATCTTCAATAGAGCTGTCGT....................................................................................................................................................................................................................................................................................................................2430.33100000000000010000
...................TCAATAGAGCTGTCGCT----------AAACTTTGCGTT.............................................................................................................................................................................................................................................................................................2930.33100000000010000000
...............................................................................................TGTCAGCCCGTGTCCTCCAACGGGGG---GAGGA......................................................................................................................................................................................................................3130.33100000010000000000
..................................................................................................CAGCCCGTGTCCTCCAACGGGGG---GA.........................................................................................................................................................................................................................2530.33100000000100000000
............................................................................................TGTTGTCAGCCCGTGTCCTCCAACG..................................................................................................................................................................................................................................2560.33200000010100000000
AAAACTGCCACTGGAATCTTCAATAGAGC..........................................................................................................................................................................................................................................................................................................................2940.25100010000000000000
.....TGCCACTGGAATCTTCAATAGA............................................................................................................................................................................................................................................................................................................................2240.25100000010000000000
.......................................................................................................CGTGTCCTCCAACGGGGG---GAGG.......................................................................................................................................................................................................................2240.25100000010000000000
....................................................................................................GCCCGTGTCCTCCAACGGGGG---GAG........................................................................................................................................................................................................................2440.25100000000001000000
.................................GCT----------AAACTTTGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2990.22200000002000000000
...............................................AACTTTGCGTTCTACCCAAACAGG--------------..................................................................................................................................................................................................................................................................2460.17100000001000000000
.............................................................................................GTTGTCAGCCCGTGTCCTCCAACGAT................................................................................................................................................................................................................................2660.17100000000000010000
..............................................................................................TTGTCAGCCCGTGTCCTCCAACG..................................................................................................................................................................................................................................2360.17100000000001000000
............................................................................................TGTTGTCAGCCCGTGTCCTCCA.....................................................................................................................................................................................................................................2260.17100000010000000000
............................................................................................TGTTGTCAGCCCGTGTCCTCCAACGG.................................................................................................................................................................................................................................2660.17100000010000000000
.....................................................................................................................................................A---------------GCC--------------A-------------------------------------------------------G-----------CAGCAGCTCATCATAA------------ATT---...........................................................2570.14100000000010000000
....................................................TGCGTTCTACCCAAACA..................................................................................................................................................................................................................................................................................1770.14100000000001000000
...................................................TTGCGTTCTACCCAAAC...................................................................................................................................................................................................................................................................................1770.14100000000001000000
.........ACTGGAATCTTCAATAGAGC..........................................................................................................................................................................................................................................................................................................................2080.13100000000001000000
...................................T----------AAACTTTGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2790.11100000000010000000
.........ACTGGAATCTTCAATAGA............................................................................................................................................................................................................................................................................................................................1890.11100000000010000000
...........TGGAATCTTCAATAGA............................................................................................................................................................................................................................................................................................................................1690.11100000001000000000
..............................................................................................................................................................................................................................................................AGCTCATCATAA------------ATT---TGAG-------------TT........................................21120.08100000000001000000
..............................................................................................................TCCAACGGGGG---GAGGATGTT..................................................................................................................................................................................................................20140.07100000000001000000
.................................................................................................................AACGGGGG---GAGGATGTT..................................................................................................................................................................................................................17140.07100000000100000000
........................................................................................................................................................................................................................................................................AA------------ATT---TGAG-------------TTA------------------T-----TTT---A........17170.06100000000001000000
.............................................................................................................................................CAGCCAGCA---------------GCC--------------A-------------------------------------------------------G-----------C............................................................................................15200.05100000000001000000
dm3
AAAACTGCCACTGGAATCTTCAATAGAGCCGTCGCT----------AAACTTTGCGTTCTACCCAAACAGG--------------ATG---ATGTCAG--------------CAAC-GGGG---GAGGATGTTTGGTTTAGCAGCC------------AACAGCAGCT------------------------------------------------------------------------------------------CATC-------------------------------------------------------------------------ATAATCACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................TG---ATGTCAG--------------CAAC-GGGG---GAGG.......................................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
......GCCACTGGAATCTTCAATAGAGCCGTC......................................................................................................................................................................................................................................................................................................................2723.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000
............................................................................................TGTCAG--------------CAAC-GGGG---GAGGATG....................................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000002000000000000000000000
....................................................TGCGTTCTACCCAAACAGG--------------ATG---ATG.........................................................................................................................................................................................................................................................2572.7119000000000000000000000000000000000000000140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000300000000000000000000000000000000001000100000000000000000000200000000100000000000001000000000000000000000000000000000000000000000000000000100000000300000000000000000000000000
....................................................TGCGTTCTACCCAAACAGG--------------ATG---ATGT........................................................................................................................................................................................................................................................2672.5718000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001200000200000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000
.....TGCCACTGGAATCTTCAATAGAGCCGT.......................................................................................................................................................................................................................................................................................................................2722.505000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATG---ATGTCAG--------------CAAC-GGGG---GAGTT......................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATG---ATGTCAG--------------CAAC-GGGG---GAG........................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
................TCTTCAATAGAGCCGTCGCT----------AAACTT...................................................................................................................................................................................................................................................................................................2632.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TG---ATGTCAG--------------CAAC-GGGG---GAGGATC....................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................GTCAG--------------CAAC-GGGG---GAGGATGTTTGG...............................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................AAACAGG--------------ATG---ATGTCAG--------------CAAC-GGGG---G..........................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................TGGTTTAGCAGCC------------AACAGCAGCT------------------------------------------------------------------------------------------CA...................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................CAGG--------------ATG---ATGTCAG--------------CAAC-G.................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCCACTGGAATCTTCAATAGAGCCGTC......................................................................................................................................................................................................................................................................................................................2821.002000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................TG---ATGTCAG--------------CAAC-GGGG---GAGGAT.....................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................G--------------ATG---ATGTCAG--------------CAAC-GGGG---GA.........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................AACAGG--------------ATG---ATGTCAG--------------CAAC-GGGG---G..........................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................TCAG--------------CAAC-GGGG---GAGGATGTTTGG...............................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................TACCCAAACAGG--------------ATG---ATGTCA......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ACAGG--------------ATG---ATGTCAG--------------CAAC-GGGG---GAG........................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CTACCCAAACAGG--------------ATG---ATGTC.......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................ATG---ATGTCAG--------------CAAC-GGGG---G..........................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................TG---ATGTCAG--------------CAAC-GGGG---GAGGATGT...................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................TTTAGCAGCC------------AACAGCAGCT------------------------------------------------------------------------------------------CATC-------------------------------------------------------------------------ATA.....2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AG--------------CAAC-GGGG---GAGGATGTTTG................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TACCCAAACAGG--------------ATG---ATGTCAG--------------C......................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------ATG---ATGT........................................................................................................................................................................................................................................................2870.866000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TAGAGCCGTCGCT----------AAACTTTGCGT..............................................................................................................................................................................................................................................................................................2450.804000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................T----------AAACTTTGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2750.804000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TAGAGCCGTCGCT----------AAACTTTGCGTTC............................................................................................................................................................................................................................................................................................2650.804000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2170.715000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200010000000000000000000000000000000000000000000000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------ATG---ATG.........................................................................................................................................................................................................................................................2770.715000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........CACTGGAATCTTCAATAGAGC..........................................................................................................................................................................................................................................................................................................................2130.672000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.....................AATAGAGCCGTCGCT----------AAACTTTGCGTT.............................................................................................................................................................................................................................................................................................2750.603000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
...................TCAATAGAGCCGTCGCT----------AAAC.....................................................................................................................................................................................................................................................................................................2150.603000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CTTTGCGTTCTACCCAAACAGG--------------ATG---A...........................................................................................................................................................................................................................................................2670.574000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ACTTTGCGTTCTACCCAAACAGG--------------ATG---............................................................................................................................................................................................................................................................2670.574000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCACTGGAATCTTCAATAGAGCCGT.......................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCCACTGGAATCTTCAATAGAGCC.........................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCCACTGGAATCTTCAATAGAGCCGC.......................................................................................................................................................................................................................................................................................................................2720.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCACTGGAATCTTCAATAGAGCCGTC......................................................................................................................................................................................................................................................................................................................2620.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCCACTGGAATCTTCAATAGAG...........................................................................................................................................................................................................................................................................................................................2320.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..................TTCAATAGAGCCGTCGCT----------AAACTT...................................................................................................................................................................................................................................................................................................2440.502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACTGCCACTGGAATCTTCAATAGA............................................................................................................................................................................................................................................................................................................................2420.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GCCACTGGAATCTTCAATAGAGCCG........................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................TGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2070.433000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATAGAGCCGTCGCT----------AAACTTTG.................................................................................................................................................................................................................................................................................................2350.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...................TCAATAGAGCCGTCGCT----------AAACTTTGC................................................................................................................................................................................................................................................................................................2650.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CAATAGAGCCGTCGCT----------AAACTTTG.................................................................................................................................................................................................................................................................................................2450.402000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATAGAGCCGTCGCT----------AAACTTTGCG...............................................................................................................................................................................................................................................................................................2550.402000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................T----------AAACTTTGCGTTCTACCCAAACAGG--------------AT................................................................................................................................................................................................................................................................2850.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CACTGGAATCTTCAATA..............................................................................................................................................................................................................................................................................................................................1730.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AAACTTTGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2660.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGGAATCTTCAATAGAGCCGTCGCT----------.........................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCTTCAATAGAGCCGTCGCT----------AAACT....................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............AATCTTCAATAGAGCCGTCGCT----------.........................................................................................................................................................................................................................................................................................................2230.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CACTGGAATCTTCAATAGAGCCGT.......................................................................................................................................................................................................................................................................................................................2430.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................TTTGCGTTCTACCCAAACAGG--------------ATG---AT..........................................................................................................................................................................................................................................................2670.292000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTGCGTTCTACCCAAACAGG--------------ATG---AT..........................................................................................................................................................................................................................................................2570.292000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................TGCGTTCTACCCAAACAGG--------------AT................................................................................................................................................................................................................................................................2170.292000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
...................................................TTGCGTTCTACCCAAACAGG--------------ATG---ATG.........................................................................................................................................................................................................................................................2670.292000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCAATAGAGCCGTCGCT----------AAACTTTGCGT..............................................................................................................................................................................................................................................................................................2940.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............GGAATCTTCAATAGAGCCGTCGC....................................................................................................................................................................................................................................................................................................................2340.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........ACTGGAATCTTCAATAGAGCCGTC......................................................................................................................................................................................................................................................................................................................2440.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGGAATCTTCAATAGAGC..........................................................................................................................................................................................................................................................................................................................1840.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCAATAGAGCCGTCGCT----------AAACTTTGC................................................................................................................................................................................................................................................................................................2740.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TAGAGCCGTCGCT----------AAACTTTGCGTTCTA..........................................................................................................................................................................................................................................................................................2840.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AATCTTCAATAGAGCCGTCGC....................................................................................................................................................................................................................................................................................................................2140.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........TGGAATCTTCAATAGAGCCGTCGC....................................................................................................................................................................................................................................................................................................................2440.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATAGAGCCGTCGCT----------AAAC.....................................................................................................................................................................................................................................................................................................1950.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCAATAGAGCCGTCGCT----------AAACTTTGCGT..............................................................................................................................................................................................................................................................................................2850.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................TCAATAGAGCCGTCGCT----------AAA......................................................................................................................................................................................................................................................................................................2050.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................AGAGCCGTCGCT----------AAACTTTGC................................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCAATAGAGCCGTCGCT----------AAACTTTGCG...............................................................................................................................................................................................................................................................................................2750.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................CAATAGAGCCGTCGCT----------AAACTTTGCG...............................................................................................................................................................................................................................................................................................2650.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CT----------AAACTTTGCGTTCTACCCA......................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................CGTCGCT----------AAACTTTGCGTTCTACCCAAA....................................................................................................................................................................................................................................................................................2850.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................AATAGAGCCGTCGCT----------AAACTTTGC................................................................................................................................................................................................................................................................................................2450.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TCTACCCAAACAGG--------------ATG---ATGT........................................................................................................................................................................................................................................................21170.183000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000
.............................CGTCGCT----------AAACTTTGCGTTC............................................................................................................................................................................................................................................................................................2060.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................AAACTTTGCGTTCTACCCAAACAGG--------------ATG---A...........................................................................................................................................................................................................................................................2960.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................AAACTTTGCGTTCTACCCAAA....................................................................................................................................................................................................................................................................................2160.171000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................AACTTTGCGTTCTACCCAAACAGG--------------A.................................................................................................................................................................................................................................................................2570.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GCGTTCTACCCAAACAGG--------------ATG---ATGT........................................................................................................................................................................................................................................................2570.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TTCTACCCAAACAGG--------------ATG---ATG.........................................................................................................................................................................................................................................................2170.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------ATG---A...........................................................................................................................................................................................................................................................2570.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................CTTTGCGTTCTACCCAAACAGG--------------AT................................................................................................................................................................................................................................................................2470.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTGCGTTCTACCCAAACAGG--------------ATG---A...........................................................................................................................................................................................................................................................2470.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................TTGCGTTCTACCCAAACAGG--------------ATG---ATGT........................................................................................................................................................................................................................................................2770.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------..................................................................................................................................................................................................................................................................2170.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ACTTTGCGTTCTACCCAAACAGG--------------ATG---A...........................................................................................................................................................................................................................................................2770.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................TGCGTTCTACCCAAACAGG--------------ATG---ATGC........................................................................................................................................................................................................................................................2670.141000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTGCGTTCTACCCAAACAGG--------------ATG---............................................................................................................................................................................................................................................................2470.141000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TCTACCCAAACAGG--------------ATG---ATG.........................................................................................................................................................................................................................................................20170.122000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................TACCCAAACAGG--------------ATG---ATGT........................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGGACACCAACAGCATTGACTAAGCGGGCAGTGAAT----------AAGCTGTGTCTTCTTCCCCTTAAGG--------------ATG---CGGTTGAAAGCC------------CGAGGG---GAGTATGTCGGGTCTCGCAGCC------------GCCAGCAG---------------------------------------------------------------------------------------CATCTAAGTT----------------------------------------T------------------ATAT--C-C---AGTTGTTTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads
droYak3
AAAACTGC------AATATTCAATAGAGCCGTCGCT----------AAACTTTGCGTTCTACCCAAACAGG--------------GTG---ATGTTGTCAGCCCCTGTTCTCCAATGGGGG---GAA-ATGAA---------------------------------------------------------------------------------------------------------------------------------ATAA------------ATT---TCAT-------------TTA------------------T-----TTTAT-TTTTATAATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droEug1
CTACCTCTCGTTG----CTTCAGGAGCGGAACAAATGGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGACAGCATCAGGAGTAACAAAGCGAGCAGTAAAC----------AAGCTGTATCTACTTCCCCTTACGT--------------ATG---ATGTTGAAACACA--GGATTCCAACGTGGG---GAGTATTTCGGGTTACGCAGCC------------GC-AGCAGCT------------------------------------------------------------------------------------------AACTA-----------------------------------------ACGTCTTAATTCGATCTCT-----TATATTAATTGCATCSizeHit CountTotal NormTotal
No Reads
droTak1
AAGACAGCGTCAGGAGTGACCAAGCGAGCAGTGAAC----------AAGCTATGTCTGCTGCCCCTTAAGG--------------ATG---ATGTTGAAACCCA--GGCTTCCAACGGGGG---GAGTATGTCGGGTCACGCAGCC------------GC-AGCAGCT------------------------------------------------------------------------------------------AATTA-----------------------------------------ACTTGTAAATCCGTACTCT-----TAT---ATCAATTGCSizeHit CountTotal NormTotal
No Reads
droEle1
TGGACAGCTACAGGTCCTACCAAAAGAGCCGTCACC----------AAACTAACCGCTCTGCGA---C-----------------------TGGTTGGAACTGTGCCTCTTCCAACGGGGG---CTGTATGTTTAGAGCAG---AC---------------------------------------------------------------------------------------------AGCCAGCACCT--------AGTCA---------------------A--ATGCTCAT---------------------------------A-G---ATGTGCGCTSizeHit CountTotal NormTotal
No Reads
droRho1
GTATCTTACCCTT----CTGCAACAACGCACCAAATGGCGGTCTCCT--------------------GAACGAATGCTGAAGGTC------------AACGACG--TAGTTTTGATAAAGG---ATGAAAATCTACCTCCCATGCG------------------------------------------------------------------------------------------------------------------------------------------GT--GGCCCTTAGCT------------------------------------AGGGTGACSizeHit CountTotal NormTotal
No Reads
droFic1
AAGACAACATCAGGAGTGACGATATGAGCAGTTAAT----------AAGCTGTGTCTGCTGCCCCTTAAGG--------------ATG---CTGTTGAAAGCCA--GGCTTCCAACGGGGG---GAGTATGTCGGGTCATCCAGCC------------GC-AGCAGAT------------------------------------------------------------------------------------------ATTTA-----------------------GG-------------TTC------------------T-----CTT---AATGCTAGCSizeHit CountTotal NormTotal
No Reads
droKik1
AAGACCGCCACTGGCCTCATCAATCGCGCAGTTGCT----------AAGCTGTGTGTGCTGCCGAAGCAGG--------------ATG---AAGTTGAAAGCCCTTGTCTTCCAACGGGGG---GAGAATGTCTGGTTATGCAGCCCGCA---------------CCT--------------G-------------------------------------------------------------GTGACCCAGCGGCTAAACA-----ACAACAATAAA------------------------------------------------------------TTTGSizeHit CountTotal NormTotal
No Reads
droAna3
AGAACCGCTTCTGGAACTACCAAGCGCGCAGTGACC----------AAGCTTTGCCTATTGCCCCTTAAGG--------------ATG---AAGTTGAAGGACA--GGCCTCAACTGGGGG---GAGTATGTCGGGTCCGGCAGTA------------GC-C---ACTG----CATAAATTCAA-----------------------------------------------------------------------------TATAA------------ATG---TAA-------------CATA------------------T-----ATA---AGTGAACACSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................CTGGGGG---GAGTATGTCGC................................................................................................................................................................................................................18200.60120000120
.................................................................TTAAGG--------------ATG---AAGTTGAAGGACA--GG...........................................................................................................................................................................................................................................24200.60121002000
................................................................................................................................ATGTCGGGTCCGGCAGTA------------GC-C---AC................................................................................................................................................................................2330.331100000
...............................................................................................TGAAGGACA--GGCCTCAACTGGG................................................................................................................................................................................................................................22200.102200000
..................................................................TAAGG--------------ATG---AAGTTGAAGGACA--GG...........................................................................................................................................................................................................................................23200.102200000
.........TCTGGAACTACCAAGCGCGCAG........................................................................................................................................................................................................................................................................................................................22200.051100000
.................................ACC----------AAGCTTTGCCTATTGCCCCTTA...................................................................................................................................................................................................................................................................................25200.051100000
................CTACCAAGCGCGCAGTGACC----------A........................................................................................................................................................................................................................................................................................................21200.051000010
....................................................................AGG--------------ATG---AAGTTGAAGGACA--GGC..........................................................................................................................................................................................................................................22200.051001000
..................................CC----------AAGCTTTGCCTATTGCCCCTTAAG.................................................................................................................................................................................................................................................................................26200.051100000
.................................ACC----------AAGCTTTGCCTATTGCCCC......................................................................................................................................................................................................................................................................................22200.051010000
................CTACCAAGCGCGCAGTGACC----------AAG......................................................................................................................................................................................................................................................................................................23200.051010000
................................................................................................GAAGGACA--GGCCTCAACTGGGGG---G..........................................................................................................................................................................................................................24200.051100000
......................................................................G--------------ATG---AAGTTGAAGGACA--GGC..........................................................................................................................................................................................................................................20200.051100000
..............................................................................................................TCAACTGGGGG---GAGTATGTCGGGT..............................................................................................................................................................................................................24200.051010000
..........CTGGAACTACCAAGCGCGCAGTG......................................................................................................................................................................................................................................................................................................................23200.051100000
........TTCTGGAACTACCAAGCGCGC..........................................................................................................................................................................................................................................................................................................................21200.051100000
................................GACC----------AAGCTTTGCCTATTGCCC.......................................................................................................................................................................................................................................................................................22200.051010000
...............................TGACC----------AAGCTTTGCCTATTGCCCCT.....................................................................................................................................................................................................................................................................................25200.051010000
...........TGGAACTACCAAGCGCGCAGTGAC....................................................................................................................................................................................................................................................................................................................24200.051100000
................................GACC----------AAGCTTTGCCTATTGCCCC......................................................................................................................................................................................................................................................................................23200.051010000
droBip1
AAAACCTCATCTGGAATTACCAAGCGAGCAGTGACT----------AAGCTGTGCCTTTTGCCCCTTAAGG--------------ATG---AAGTTGGAGTAGA--AGCCCCAACTGGGGG---GAGAATGTCGGGTCAAGCAGCA------------A---GCAACT--------------A----------------------------------------------------------------------------ATTT-AAACACAACAAT-TAATA-A----------------------------TTAACTGA--T---GTTTT---GCTGGTCGCSizeHit CountTotal NormTotal
No Reads
dp5
AAAGA-------GGCCTTTTCAAGAGGGCCGTTGGA----------AAAGTTGCGGTTCTGCCCCTTCAGG--------------ATGGATCTGTTGAAAGTCTTTGCCTTCCAACGGGGG---GTGAATGTTCGGAGCAG---AACGCAGCCGATTAGC-C---GCTT----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----TTT---GTTTGTTACSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCCA.....................................................................................................................................................................................................................................2469.335605300001200
......................................................................................TGGATCTGTTGAAAGTCTTTGCCT.........................................................................................................................................................................................................................................2476.5746021201011470
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCC......................................................................................................................................................................................................................................2365.503303120000000
..................................................................................................................................................................................ATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAG..............................................25204.058108100000000
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCCAA....................................................................................................................................................................................................................................2564.002402400000000
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCCAAC...................................................................................................................................................................................................................................2663.832302210000000
....................................................................................................................................TCGGAGCAG---AACGCAGCCGATTAGC-C---GC................................................................................................................................................................................2832.6780000000530
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAGC...............................................................................................................................................................................................2492.442208000003110
......................................................................................TGGATCTGTTGAAAGTCTTTGC...........................................................................................................................................................................................................................................2272.00140100000490
........................................................................................................................G---GTGAATGTTCGGAGCAG---AACGCAGC...............................................................................................................................................................................................2692.001802000030130
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAGCCG.............................................................................................................................................................................................2691.781604000002100
.....................................................................................................................................................................................................................................................................................TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----T..............26201.553100000000310
.......................................................................................GGATCTGTTGAAAGTCTTTGCCTTC.......................................................................................................................................................................................................................................2561.5090810000000
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAGCC..............................................................................................................................................................................................2591.44130610000420
......................................................................................TGGATCTGTTGAAAGTCTTTGCCTT........................................................................................................................................................................................................................................2571.43100700000030
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAGCCGA............................................................................................................................................................................................2791.33120300000450
.......................................................................................GGATCTGTTGAAAGTCTTTGCCTTCC......................................................................................................................................................................................................................................2661.3380700000100
.........................................................................................ATCTGTTGAAAGTCTTTGCCTTCC......................................................................................................................................................................................................................................2461.3380800000000
.......................................................................................GGATCTGTTGAAAGTCTTTGCCTT........................................................................................................................................................................................................................................2471.2990900000000
...............................TTGGA----------AAAGTTGCGGTTCTGCCCC......................................................................................................................................................................................................................................................................................2411.0010010000000
..............................GTTGGA----------AAAGTTGCGGTTCTGCCCCTT....................................................................................................................................................................................................................................................................................2711.0010000001000
.....................AAGAGGGCCGTTGGA----------AAAGTTGCGG...............................................................................................................................................................................................................................................................................................2511.0010000000100
....................CAAGAGGGCCGTTGGA----------AAAGTTGC.................................................................................................................................................................................................................................................................................................2411.0010000000010
.................................GGA----------AAAGTTGCGGTTCTGCCC.......................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................ATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCT.................................................22201.002002000000000
...................TCAAGAGGGCCGTTGGA----------AAAG.....................................................................................................................................................................................................................................................................................................2111.0010000000010
..............................GTTGGA----------AAAGTTGCGGTTCTGCCCC......................................................................................................................................................................................................................................................................................2511.0010100000000
...............................TTGGA----------AAAGTTGCGGTTCTGCCCCT.....................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAG................................................................................................................................................................................................2390.8980200000150
...........................................................................................CTGTTGAAAGTCTTTGCCTTCC......................................................................................................................................................................................................................................2260.8350500000000
......................................................................................TGGATCTGTTGAAAGTCTTTGCCTTCC......................................................................................................................................................................................................................................2760.8350120000020
......................................................................................TGGATCTGTTGAAAGTCTTTGCCTTC.......................................................................................................................................................................................................................................2660.8350400000100
......................................................................G--------------ATGGATCTGTTGAAAGTCTTTGCCT.........................................................................................................................................................................................................................................2670.7151210001000
......................................................................................TGGATCTGTTGAAAGTCTTTGCC..........................................................................................................................................................................................................................................2370.7150230000000
.................................................................................................................................TGTTCGGAGCAG---AACGCAGCCGA............................................................................................................................................................................................23200.701401400000000
....................................................................................................................................TCGGAGCAG---AACGCAGCCGATTAGC-C---G.................................................................................................................................................................................2730.6720200000000
....................................................................................................................................................CAGCCGATTAGC-C---GCTT----ACCAAAT...................................................................................................................................................................2430.6720200000000
....................................................................................................................................................CAGCCGATTAGC-C---GCTT----ACCAAATAGC................................................................................................................................................................2730.6720200000000
.......................................................................................GGATCTGTTGAAAGTCTTTGCCTTCCAA....................................................................................................................................................................................................................................2860.6740310000000
.........................................................................................ATCTGTTGAAAGTCTTTGCCTTCCA.....................................................................................................................................................................................................................................2560.6740400000000
......................................................................................................................................GGAGCAG---AACGCAGCCGATTAGC-C---..................................................................................................................................................................................2430.6720200000000
..........................................................................................TCTGTTGAAAGTCTTTGCCTTC.......................................................................................................................................................................................................................................2260.6740400000000
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCCAACGG.................................................................................................................................................................................................................................2860.6740100000030
...................................................................................................................................................................................TAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGC..........................................28200.601201110000000
......................................................................................TGGATCTGTTGAAAGTCTTTG............................................................................................................................................................................................................................................2170.5740100000300
..........................................................................................TCTGTTGAAAGTCTTTGCCTT........................................................................................................................................................................................................................................2170.5740400000000
.........................................................................................ATCTGTTGAAAGTCTTTGCCTTCCAA....................................................................................................................................................................................................................................2660.5030300000000
...........................................................................................CTGTTGAAAGTCTTTGCCTTCCA.....................................................................................................................................................................................................................................2360.5030300000000
...........................................................................................CTGTTGAAAGTCTTTGCCTTCCAAC...................................................................................................................................................................................................................................2560.5030300000000
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCCAACG..................................................................................................................................................................................................................................2760.5030000010020
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAGC...............................................................................................................................................................................................23100.5050500000000
.......................................................................................GGATCTGTTGAAAGTCTTTGCCTTCCA.....................................................................................................................................................................................................................................2760.5030300000000
.......................................................................................GGATCTGTTGAAAGTCTTTGCCT.........................................................................................................................................................................................................................................2370.4330300000000
..................................................................TCAGG--------------ATGGATCTGTTGAAAGTC................................................................................................................................................................................................................................................2370.4330000100200
.................................................................TTCAGG--------------ATGGATCTGTTGAAAGTCT...............................................................................................................................................................................................................................................2570.4330100000020
..................................................................TCAGG--------------ATGGATCTGTTGAAAGTCTT..............................................................................................................................................................................................................................................2570.4330300000000
.................................................................TTCAGG--------------ATGGATCTGTTGAAAGTC................................................................................................................................................................................................................................................2470.4330200000010
...............................................................................................TGAAAGTCTTTGCCTTCCAACGGGGG---G..........................................................................................................................................................................................................................2750.4020200000000
...................................................TGCGGTTCTGCCCCTTCAGG--------------ATG...............................................................................................................................................................................................................................................................2350.4020200000000
.....................................................................................................................................................................................................................................................................................TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----...............25200.3570000000070
...........................................................................................................................................................TTAGC-C---GCTT----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATT.............................................................2830.3310100000000
.................................................................................................................................................ACGCAGCCGATTAGC-C---GCTT----ACCA......................................................................................................................................................................2430.3310100000000
........................................................................................GATCTGTTGAAAGTCTTTGCCTTCCAA....................................................................................................................................................................................................................................2760.3320000000200
.........................................................................................ATCTGTTGAAAGTCTTTGCCTTCCAACG..................................................................................................................................................................................................................................2860.3320200000000
.....................................................................................................................................CGGAGCAG---AACGCAGCCGATTAGC-C---G.................................................................................................................................................................................2630.3310100000000
........................................................................................................................G---GTGAATGTTCGGAGCAG---AACGC..................................................................................................................................................................................................2390.3330000000030
....................................................................................................................................................CAGCCGATTAGC-C---GCTT----ACCAAATAG.................................................................................................................................................................2630.3310100000000
..........................................................................................................................................CAG---AACGCAGCCGATTAGC-C---GCTT----ACC.......................................................................................................................................................................2730.3310100000000
....................................................................................................................................TCGGAGCAG---AACGCAGCCGATTAGC-C---GA................................................................................................................................................................................2830.3310100000000
....................................................................................................................................TCGGAGCAG---AACGCAGCCGATTAGC-C---GT................................................................................................................................................................................2830.3310100000000
......................................................................................................................GGG---GTGAATGTTCGGAGCAG---AACGC..................................................................................................................................................................................................2590.3330000000030
..............................................................................................................TCCAACGGGGG---GTGAATGTTCGGAG.............................................................................................................................................................................................................25200.3060400000110
......................................................................................................................GGG---GTGAATGTTCGGAGCAG---AACG...................................................................................................................................................................................................24100.3030200001000
........................................................................................................................G---GTGAATGTTCGGAGCAG---AACG...................................................................................................................................................................................................22100.3030200100000
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAGCC..............................................................................................................................................................................................24100.3030101000010
......................................................................................TGGATCTGTTGAAAGTC................................................................................................................................................................................................................................................1770.2920000000200
.......................................................................................GGATCTGTTGAAAGTCTTTGCC..........................................................................................................................................................................................................................................2270.2920200000000
...........................................................................................CTGTTGAAAGTCTTTGCCTT........................................................................................................................................................................................................................................2070.2920200000000
.........................................................TCTGCCCCTTCAGG--------------ATGGATCTGTTG......................................................................................................................................................................................................................................................26200.2550500000000
........................................................................................................................G---GTGAATGTTCGGAGCAG---AAC....................................................................................................................................................................................................21200.2550400000100
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCA.................................................................................................................................................................................................2290.2220100000010
........................................................................................................................G---GTGAATGTTCGGAGCAG---AACGCA.................................................................................................................................................................................................2490.2220100001000
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAGCCGAA...........................................................................................................................................................................................2890.2220000000200
.......................................................................................................................GG---GTGAATGTTCGGAGCAG---AACGC..................................................................................................................................................................................................2490.2220000000020
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAGCCG.............................................................................................................................................................................................25100.2020200000000
...................................................TGCGGTTCTGCCCCTTCAGG--------------ATGGA.............................................................................................................................................................................................................................................................2550.2010100000000
.................................................................................................................................TGTTCGGAGCAG---AACGCAGCC..............................................................................................................................................................................................21200.2040400000000
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAGCCGA............................................................................................................................................................................................26100.2020200000000
................................................................................................GAAAGTCTTTGCCTTCCAACGGGGG---G..........................................................................................................................................................................................................................2650.2010100000000
.......................................................................................................................................................................TT----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCC..................................................28200.2040040000000
....................................................................................................GTCTTTGCCTTCCAACGGGGG---...........................................................................................................................................................................................................................2150.2010100000000
...............................................................................................TGAAAGTCTTTGCCTTCCAACGGGGG---GTT........................................................................................................................................................................................................................2950.2010010000000
...........................................................................................CTGTTGAAAGTCTTTGCCTTCCAACG..................................................................................................................................................................................................................................2660.1710100000000
..............................................................................................TTGAAAGTCTTTGCCTTCCAACGGG................................................................................................................................................................................................................................2560.1710100000000
......................................................................................TGGATCTGTTGAAAGTCTTTGCCTTCCAA....................................................................................................................................................................................................................................2960.1710000000010
...........................................................................................CTGTTGAAAGTCTTTGCCTTC.......................................................................................................................................................................................................................................2160.1710100000000
........................................................................................GATCTGTTGAAAGTCTTTGCCTTCC......................................................................................................................................................................................................................................2560.1710100000000
...........................................................................................CTGTTGAAAGTCTTTGCCTTCCAA....................................................................................................................................................................................................................................2460.1710100000000
.........................................................................................ATCTGTTGAAAGTCTTTGCCTTCCAAC...................................................................................................................................................................................................................................2760.1710100000000
........................................................................................................................G---GTGAATGTTCGGAGCAG---AA.....................................................................................................................................................................................................20200.1530100000020
....................................................................................................................................TCGGAGCAG---AACGCAGCCGATTAGC-......................................................................................................................................................................................25200.1530000000030
.............................................................................................................................TGAATGTTCGGAGCAG---AAC....................................................................................................................................................................................................19200.1530300000000
....................................................................AGG--------------ATGGATCTGTTGAAAGTC................................................................................................................................................................................................................................................2170.1410000000010
......................................................................................TGGATCTGTTGAAAGT.................................................................................................................................................................................................................................................1670.1410000000010
..........................................................................................TCTGTTGAAAGTCTTTGCCTTCCAAG...................................................................................................................................................................................................................................2670.1410100000000
......................................................................................TGGATCTGTTGAAAGTCTTTGCCC.........................................................................................................................................................................................................................................2470.1410010000000
.........................................................................................ATCTGTTGAAAGTCTTTGCC..........................................................................................................................................................................................................................................2070.1410000000100
......................................................................................TGGATCTGTTGAAAGTCTTTGCCA.........................................................................................................................................................................................................................................2470.1410100000000
.........................................................................................ATCTGTTGAAAGTCTTTGCCTT........................................................................................................................................................................................................................................2270.1410100000000
......................................................................G--------------ATGGATCTGTTGAAAGTCTTTGC...........................................................................................................................................................................................................................................2470.1410100000000
...................................................................CAGG--------------ATGGATCTGTTGAAAGTCTTTGC...........................................................................................................................................................................................................................................2770.1410000000010
..................................................................TCAGG--------------ATGGATCTGTTGAAAGTCT...............................................................................................................................................................................................................................................2470.1410000000010
........................................................................................GATCTGTTGAAAGTCTTTGCC..........................................................................................................................................................................................................................................2170.1410100000000
..........................................................................................TCTGTTGAAAGTCTTTGCCT.........................................................................................................................................................................................................................................2070.1410100000000
..........................................................................................TCTGTTGAAAGTCTTTGCCTTA.......................................................................................................................................................................................................................................2270.1410000000100
................................................................CTTCAGG--------------ATGGATCTGTTGAAAGT.................................................................................................................................................................................................................................................2470.1410100000000
.......................................................................................................................GG---GTGAATGTTCGGAGCAG---AACGCA.................................................................................................................................................................................................2590.1110100000000
.............................................................................................................................TGAATGTTCGGAGCAG---AACGC..................................................................................................................................................................................................2190.1110100000000
........................................................................................................................G---GTGAATGTTCGGAGCAG---AACGCAG................................................................................................................................................................................................2590.1110000000010
............................................................................................................................GTGAATGTTCGGAGCAG---AACGCAGCCGA............................................................................................................................................................................................2890.1110100000000
.......................................................................................................................GG---GTGAATGTTCGGAGCAG---AACGCAGC...............................................................................................................................................................................................2790.1110100000000
.............................................................................................................................TGAATGTTCGGAGCAG---AACGCAGCCT.............................................................................................................................................................................................2690.1110000000010
AAAGA-------GGCCTTTTCAAGAGGG...........................................................................................................................................................................................................................................................................................................................2190.1110000010000
...............................................................................................................................AATGTTCGGAGCAG---AACGCAGCCT.............................................................................................................................................................................................24100.1011000000000
...................................................................................................................CGGGGG---GTGAATGTTCGGAGCAG---AA.....................................................................................................................................................................................................25200.1020000000020
...................TCAAGAGGGCCGTTGGA----------A........................................................................................................................................................................................................................................................................................................18200.1020200000000
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAG................................................................................................................................................................................................22100.1010000000010
..............................................................................................................TCCAACGGGGG---GTGAATGTTCGG...............................................................................................................................................................................................................23200.1020200000000
..........................................................CTGCCCCTTCAGG--------------ATGGA.............................................................................................................................................................................................................................................................18200.1020200000000
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAGCCGATT..........................................................................................................................................................................................28100.1010100000000
...................................................................................................................................TTCGGAGCAG---AACGCAGCCGATTAGC-......................................................................................................................................................................................26200.1020000000110
..............................................................................................................................GAATGTTCGGAGCAG---AACGCA.................................................................................................................................................................................................21100.1010100000000
.................................................................................................................................TGTTCGGAGCAG---AACGCAGC...............................................................................................................................................................................................20200.1020200000000
...................................................................................................................................................................................................................................................................................C-TAATTC-TT--GGCCCTCAGCCGCT.........................................23200.1020100100000
....................................................................................................................................................................................AGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGC..........................................27200.1020200000000
...............................................................................................................................AATGTTCGGAGCAG---AACGCAGCCGAT...........................................................................................................................................................................................26100.1010100000000
................TTTTCAAGAGGGCCGTTGG....................................................................................................................................................................................................................................................................................................................19100.1010000000010
...............................................................................................................................AATGTTCGGAGCAG---AACGCAGC...............................................................................................................................................................................................22100.1010000000010
.................................................................................................................................................................................AATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCC...................................................21200.1020002000000
..............................................................................................................................GAATGTTCGGAGCAG---AACGCAGCCGAAA..........................................................................................................................................................................................28100.1010100000000
........................................................................................................................G---GTGAATGTTCGGAGCAG---A......................................................................................................................................................................................................19200.1020100000010
...............................................................................................................................AATGTTCGGAGCAG---AACGCAGCC..............................................................................................................................................................................................23100.1010100000000
...................................................................................................................................................................................................................................................................................C-TAATTC-TT--GGCCCTCAGCCG...........................................21200.1020200000000
..................................................................................................................................................................................................................................................................................CC-TAATTC-TT--GGCCCTCAGCC............................................21200.1020200000000
.................................................................................................................................TGTTCGGAGCAG---AACGCAGCCGATT..........................................................................................................................................................................................25200.1020200000000
................................................................................................................................ATGTTCGGAGCAG---AACGCAGCCG.............................................................................................................................................................................................23110.0910100000000
.................TTTCAAGAGGGCCGTTGG....................................................................................................................................................................................................................................................................................................................18110.0910000000100
.......................................................................................................................GG---GTGAATGTTCGGAGCAG---AA.....................................................................................................................................................................................................21200.0510000001000
.............................................................CCCCTTCAGG--------------ATGGATCTGTTGAAAG..................................................................................................................................................................................................................................................26200.0510100000000
..................................................................TCAGG--------------ATGGATCTGTTGAAAG..................................................................................................................................................................................................................................................21200.0510100000000
........................................................TTCTGCCCCTTCAGG--------------ATGGATCTGTTG......................................................................................................................................................................................................................................................27200.0510100000000
..................................................................................................................................................................................ATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCA...........................................28200.0510100000000
..........................................................CTGCCCCTTCAGG--------------ATGGATCTGT........................................................................................................................................................................................................................................................23200.0510100000000
...................................................................................................................................................................................TAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGA.............................................25200.0510100000000
........................................................................................................................................................................T----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGC....................................................25200.0510010000000
.......................................................GTTCTGCCCCTTCAGG--------------ATGG..............................................................................................................................................................................................................................................................20200.0510100000000
.................................................................TTCAGG--------------ATGGATCTGTTGAA....................................................................................................................................................................................................................................................20200.0510100000000
..............................................................................................................................................................................CCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--G......................................................21200.0510000010000
..................................................................................................................................................................................ATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAA..............................................25200.0510010000000
.....................................................................................................................................................................................................................................................................................TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----TTT---G........29200.0510100000000
..................................................................................................................................GTTCGGAGCAG---AACGCAGCCG.............................................................................................................................................................................................21200.0510100000000
......................................................................................................................GGG---GTGAATGTTCGGAGCAG---A......................................................................................................................................................................................................21200.0510100000000
...................................................................................................................CGGGGG---GTGAATGTTCGGAGC............................................................................................................................................................................................................21200.0510100000000
..............................................................................................................TCCAACGGGGG---GTGAATGTTC.................................................................................................................................................................................................................21200.0510100000000
........................................................TTCTGCCCCTTCAGG--------------ATGGATCTGT........................................................................................................................................................................................................................................................25200.0510100000000
.........................................................TCTGCCCCTTCAGG--------------ATGGATC...........................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................TCCAACGGGGG---GTGAATGTTCGGT..............................................................................................................................................................................................................24200.0510100000000
...........................................................TGCCCCTTCAGG--------------ATGGATCT..........................................................................................................................................................................................................................................................20200.0510100000000
...................................................................................................................................................................................TAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCC..................................................20200.0510010000000
.........................................................TCTGCCCCTTCAGG--------------ATGGA.............................................................................................................................................................................................................................................................19200.0510100000000
..............................................................................................................TCCAACGGGGG---GTGAATGTT..................................................................................................................................................................................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................................TAATTC-TT--GGCCCTCAGCCG...........................................20200.0510000100000
..................TTCAAGAGGGCCGTTGGA----------A........................................................................................................................................................................................................................................................................................................19200.0510100000000
.....................................................................................................................GGGG---GTGAATGTTCGGAGCAG---.......................................................................................................................................................................................................21200.0510000000010
....................................................GCGGTTCTGCCCCTTCAGG--------------AT................................................................................................................................................................................................................................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................C-TAATTC-TT--GGCCCTCAGCCGCTTA------------------.....................25200.0510000100000
.............................................................................................................................TGAATGTTCGGAGCAG---AA.....................................................................................................................................................................................................18200.0510000000010
....................CAAGAGGGCCGTTGGA----------AAA......................................................................................................................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................................................................ATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCC.................................................22200.0510010000000
....................................................GCGGTTCTGCCCCTTCAGG--------------ATGG..............................................................................................................................................................................................................................................................23200.0510100000000
..............................................................CCCTTCAGG--------------ATGGATCTGTTGAAA...................................................................................................................................................................................................................................................24200.0510000000100
.................................................................................................................................TGTTCGGAGCAG---AACGCAGCCGATA..........................................................................................................................................................................................25200.0510100000000
.....................................................................................................................................................................................................................................................................................TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----TTT---.........28200.0510100000000
...........................................................TGCCCCTTCAGG--------------ATGGATCTGT........................................................................................................................................................................................................................................................22200.0510000100000
.........................................................TCTGCCCCTTCAGG--------------ATGGATCTGT........................................................................................................................................................................................................................................................24200.0510000100000
..............................................................CCCTTCAGG--------------ATGGATCTGTTG......................................................................................................................................................................................................................................................21200.0510100000000
................................................................................................................CAACGGGGG---GTGAATGTTCGG...............................................................................................................................................................................................................21200.0510100000000
.......................................................................................................................................................................................A------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGCT.........................................25200.0510100000000
.......................................................................................................TTTGCCTTCCAACGGGGG---G..........................................................................................................................................................................................................................19200.0510100000000
............................................................GCCCCTTCAGG--------------ATGGATCTGT........................................................................................................................................................................................................................................................21200.0510100000000
..............................................................................................................TCCAACGGGGG---GTGAATA....................................................................................................................................................................................................................18200.0510100000000
.................................................................................................................................................................................AATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCT.................................................23200.0510100000000
.............................................................................................................TTCCAACGGGGG---GTGAATGTTCG................................................................................................................................................................................................................23200.0510100000000
...................................................................................................................................................................................................................................................................................C-TAATTC-TT--GGCCCTCAGCCGCTTT------------------.....................25200.0510100000000
..................................................................................................................................................................................................................................................................................CC-TAATTC-TT--GGCCCTCAGCCGCT.........................................24200.0510010000000
......................................................................................................CTTTGCCTTCCAACGGGGG---...........................................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................GTTCGGAGCAG---AACGCAGCC..............................................................................................................................................................................................20200.0510100000000
................................................................................................................CAACGGGGG---GTGAATGTTCGGAGC............................................................................................................................................................................................................24200.0510000000010
.....................................................CGGTTCTGCCCCTTCAGG--------------ATG...............................................................................................................................................................................................................................................................21200.0510100000000
.................................................................................................................................TGTTCGGAGCAG---AACGCAGCCG.............................................................................................................................................................................................22200.0510000000010
droPer2
CGCACTCAAAGAGGCCTTTTCAAGAGGGCCGTTGGA----------AAAATAGCGGTTCTGCCCCTTCAGG--------------ATGGATCTGTTGAAAGCCTTTGCCTTCCAACGGGGG---GTGAATGTTTGGAGCAGAACCC---AGCCGATTAGC-T---GCTT----ACCAAATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAGCCGCTTA------------------T-----TTT---GTTTGTTACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................................TTGGAGCAGAACCC---AGCCGATTAGC-......................................................................................................................................................................................2530.331010000
.................................................................................................................................TGTTTGGAGCAGAACCC---AGCCGATTAGC-......................................................................................................................................................................................2830.331010000
..............................................................................................................TCCAACGGGGG---GTGAATGTTTGGAGC............................................................................................................................................................................................................2630.331000001
.................................................................................................................................TGTTTGGAGCAGAACCC---AGCCGATT..........................................................................................................................................................................................2560.332020000
.......................................................................................GGATCTGTTGAAAGCCTTTGCCT.........................................................................................................................................................................................................................................23200.255500000
...................................................................................................................................TTTGGAGCAGAACCC---AGCCGAA...........................................................................................................................................................................................2260.171010000
.................TTTCAAGAGGGCCGTTGGA----------AAAATAGC.................................................................................................................................................................................................................................................................................................27200.153030000
.................................................................................................................................TGTTTGGAGCAGAACCC---CC................................................................................................................................................................................................19130.081010000
...................TCAAGAGGGCCGTTGGA----------AAAATA...................................................................................................................................................................................................................................................................................................23200.051000001
.......................................................................................GGATCTGTTGAAAGCCTTTGCCTG........................................................................................................................................................................................................................................24200.051010000
.......................................................................................GGATCTGTTGAAAGCCTTTGCCTTC.......................................................................................................................................................................................................................................25200.051000001
.......................................................................................GGATCTGTTGAAAGCCTTTGC...........................................................................................................................................................................................................................................21200.051010000
..................................................................................................................................................................................ATAGCA------------------------------------------------------------------------------------------CC-TAATTC-TT--GGCCCTCAG..............................................25200.051010000
.........................................................................................................................................GCAGAACCC---AGCCGATTAGC-T---GCT...............................................................................................................................................................................24200.051010000
droWil2
GTACCTCAAGGAG----CTTCACAAACGGCACAAGTGGAAATCACCG--------------------ACTCGCAGAATCCAGACC------------GGCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................AAACGGCACAAGTGGAAATCACCG--------------------ACT.................................................................................................................................................................................................................................................................................2711.00100010
...CCTCAAGGAG----CTTCACAAACGG..........................................................................................................................................................................................................................................................................................................................22200.10202000
.....TCAAGGAG----CTTCACAAACGG..........................................................................................................................................................................................................................................................................................................................20200.05100001
droVir3
A---CCGCAACAGGAGAAACGAGAAGAGCTGCAAAC----------AAGCTATGCCTATTGCCCATCAGGG--------------AAT---CTGTTGAAAGCCCATGCCTTCCAACAGGGG---GAGAATGTCTGGTTATGCAGCC------------AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------G---------------------CATCTTAATT-------T-----TAT-C-TTATAATACSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............GAAACGAGAAGAGCTGCAAAC----------AAGC.....................................................................................................................................................................................................................................................................................................252090.701814000220000000000000001000002500014028600200000000000000000000000001600000000024305619410
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTA...................................................................................................................................................................................................................................................................................................272015.153030000100000300000000000017078002218381910003130000000000000000000000000190026000100350000
...............GAAACGAGAAGAGCTGCAAAC----------AAG......................................................................................................................................................................................................................................................................................................242014.10282000000000010000000001000000000070300020000000000000000000000000000000000000268000
...............GAAACGAGAAGAGCTGCAAAC----------AAGCT....................................................................................................................................................................................................................................................................................................26209.401880000004000017355000000000240002003000003100000000000000000000000010000000000002100045
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTAT..................................................................................................................................................................................................................................................................................................28207.451490040201000220000000000000800371210140001700300000000000000000000000027050100000001003
...................................................................................................................................................................CAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------G---------------------C.....................................2723.5070000000000000000000000010000000000000100000000000000000000000000010000000000211
.......................................................................................T---CTGTTGAAAGCCCATGCCTTCCAACA..................................................................................................................................................................................................................................2723.5070000000000000000000000000000000000010000000000000000000000000005100000000000000
..............................................................................................................................................................AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAAC......................................................................................2422.0040000000000000000000000001000000000000000000000000000000000000003000000000000000
............................................................................................TGTTGAAAGCCCATGCCTTCCAACAGG................................................................................................................................................................................................................................2722.0040000000000000000000000000010100000002000000000000000000000000000000000000000000
..............................................................................................................................................................AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGA...................................................................................2722.0040000000000001000000000000010000010000000000000000000000000000000000000000000001
.......................................................................................T---CTGTTGAAAGCCCATGCCTTCCAAC...................................................................................................................................................................................................................................26201.9038001800000000000000000000000100000000000000000000000000000000000001900000000000000
...............GAAACGAGAAGAGCTGCAAAC----------A........................................................................................................................................................................................................................................................................................................22201.803600000000000000000000000000010001000000000000000000000000000000000340000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AA.......................................................................................................................................................................................................................................................................................................23201.653300000000000000000000000000204000000000000000000000000000000000000016600000104000
..............................................................................................................................................................AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTG....................................................................................2621.5030000000000000000000000000000110010000000000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------.........................................................................................................................................................................................................................................................................................................21201.3527000000000000000000000000000000000000000000000000000000000000000000160000000001100
..............AGAAACGAGAAGAGCTGCAAAC----------AAG......................................................................................................................................................................................................................................................................................................25201.20240000000010000000000010000000000000000000000000000000000000000000022100000022049
..............................................................................................................................................................AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACT.....................................................................................2521.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
.................................................................................................................................................................AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------............................................................2721.0020000000000000000000000000000000000000000000000000000000000000000010000000000001
............................................................................................TGTTGAAAGCCCATGCCTTCCAACAGGG...............................................................................................................................................................................................................................2821.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
...................................................................................................................................................................CAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------G---------------------CA....................................2821.0020000000000000000000000001000000000000000000000000000000000000001000000000000000
...............GAAACGAGAAGAGCTGCAAA....................................................................................................................................................................................................................................................................................................................20200.65130000000000000000000000000000120000000000000000000000000000000000024400000000000
..............AGAAACGAGAAGAGCTGCAAAC----------AAGC.....................................................................................................................................................................................................................................................................................................26200.60120000000000000000000000000000000000000000000000000000000000000001003000000020006
.................AACGAGAAGAGCTGCAAAC----------AAG......................................................................................................................................................................................................................................................................................................22200.60120000000200000000000000000000000000000000000100011020000000000000000000000004001
..................................................TATGCCTATTGCCCATCAGGG--------------AAT---CTGT........................................................................................................................................................................................................................................................28200.60120000000000000000000000000060006000000000000000000000000000000000000000000000000
.....CGCAACAGGAGAAACGAGAAGAGCT.........................................................................................................................................................................................................................................................................................................................25200.55110000000000000000000000000100000000000000000000000000000000000000003201000003100
...................................................................................................................................................................CAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACT.....................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------G---------------------C.....................................2920.5010000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................TCCAACAGGGG---GAGAATGT...................................................................................................................................................................................................................1920.5010000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGAT..................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................GCCTATTGCCCATCAGGG--------------AAT---CTGT........................................................................................................................................................................................................................................................25200.50100000000000000000000000000200020400020000000000000000000000000000000000000000000
............................................................................................TGTTGAAAGCCCATGCCTTCCAACAGGGG---...........................................................................................................................................................................................................................2920.5010000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................AACAACT--------------G----GAGC---GA------------------------------------------C-----------CCGC.........................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................GA------------------------------------------C-----------CCGCAACTGATA---------------------G---------------------CATCTTAAA.............................2520.5010000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................CAACT--------------G----GAGC---GA------------------------------------------C-----------CCGCAACTGATA---------------------............................................................2520.5010000000000000000000000000000000000000000000000000000000000000000010000000000000
....CCGCAACAGGAGAAACGAGAAGAGC..........................................................................................................................................................................................................................................................................................................................25200.50100010000000000000000000001000000000100000000000000000000000000000303000000001000
................AAACGAGAAGAGCTGCAAAC----------AAGCTA...................................................................................................................................................................................................................................................................................................26200.4590000000000000000000000000001201000001000000000000000000000000004000000000000000
.....CGCAACAGGAGAAACGAGAAGAGC..........................................................................................................................................................................................................................................................................................................................24200.4080000000100000000000010000000000000000010000000000000000000000000010000000000013
.............GAGAAACGAGAAGAGCTGCAAAC----------AAGC.....................................................................................................................................................................................................................................................................................................27200.4080000000000000000000000000000000000000000000000000000000000000000010000000013030
.................AACGAGAAGAGCTGCAAAC----------AAGCTAT..................................................................................................................................................................................................................................................................................................26200.3570000000001100000000000000000200000010001000000000000000000000001000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAGA.....................................................................................................................................................................................................................................................................................................25200.3570000000000000000000000000000000000000000000000000000000000000000030000000000040
....................................................TGCCTATTGCCCATCAGGG--------------AAT---CTGTTG......................................................................................................................................................................................................................................................28200.3060000000000000000000000000000600000000000000000000000000000000000000000000000000
.......................................................................................T---CTGTTGAAAGCCCATGCCTTCC......................................................................................................................................................................................................................................23200.3060000001000000000000000000001000000000020000000000000000000000000000000002000000
.............GAGAAACGAGAAGAGCTGCAAAC----------AAG......................................................................................................................................................................................................................................................................................................26200.3060000000000000000000000000000000100001000000000000000000000000000002100000000010
..............................................................................................................................................................AA-AACAACT--------------G----GAGC---GA------------------------------------------C-----------C............................................................................................18200.2550000000000000000000010001000000000000000000000000000000000000000012000000000000
...............GAAACGAGAAGAGCTGCAA.....................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000100000000010000000000000000000000000000010100000001000
.....CGCAACAGGAGAAACGAGAAGAGCTGC.......................................................................................................................................................................................................................................................................................................................27200.2550000000000000000000000000000120000100000000000000000000000000000001000000000000
.......................................................................................T---CTGTTGAAAGCCCATGCCTTCCA.....................................................................................................................................................................................................................................24200.2550000000000000000000000010400000000000000000000000000000000000000000000000000000
............................................................................................TGTTGAAAGCCCATGCCTTCCAA....................................................................................................................................................................................................................................23200.2550000000000000000000000002010020000000000000000000000000000000000000000000000000
...................................................................................................................................TCTGGTTATGCAGCC------------AA-AACAACT--------------G----GAG.........................................................................................................................................................2840.2510000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................TGCCTATTGCCCATCAGGG--------------AAT---CT..........................................................................................................................................................................................................................................................24200.2550000000000000000000000000000500000000000000000000000000000000000000000000000000
....................................................TGCCTATTGCCCATCAGGG--------------AAT---CTGT........................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000400000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTAA..................................................................................................................................................................................................................................................................................................28200.2040000000000000000000000000100000020100000000000000000000000000000000000000000000
..................................................................CAGGG--------------AAT---CTGTTGAAAGCCCATGCCT.........................................................................................................................................................................................................................................27200.2040000000000000000000000000000001000000000000000000000000000000000003000000000000
...........................................................TGCCCATCAGGG--------------AAT---CTGTTGAAAGC.................................................................................................................................................................................................................................................26200.2040000000000000000000010000000003000000000000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCA......................................................................................................................................................................................................................................................................................................................18200.2040010001000000000000000000000001000000000000000000000000000000000000000000000001
................AAACGAGAAGAGCTGCAAAC----------AAGC.....................................................................................................................................................................................................................................................................................................24200.2040000000000000000000000000000000000000000000000000000000000000001000000000000003
A---CCGCAACAGGAGAAACGAGAAG.............................................................................................................................................................................................................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000004000000000000000
.......................................................................................T---CTGTTGAAAGCCCATGCC..........................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000400000000
...............GAAACGAGAAGAGCTGC.......................................................................................................................................................................................................................................................................................................................17200.2040000000000000000000000000000000000000000000000000000000000000010000200000000001
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTATG.................................................................................................................................................................................................................................................................................................29200.2040000000000000000000000000000000000000000000000000000000000000000011000000010100
...................................................ATGCCTATTGCCCATCAGGG--------------AAT---CTGT........................................................................................................................................................................................................................................................27200.2040000000000000000000000000000000200002000000000000000000000000000000000000000000
..................ACGAGAAGAGCTGCAAAC----------AAGCTA...................................................................................................................................................................................................................................................................................................24200.2040000000000000000000000000000000100000000000000000000000000000000300000000000000
.....................................................GCCTATTGCCCATCAGGG--------------AAT---CTGTT.......................................................................................................................................................................................................................................................26200.1530000000000000000000000000000210000000000000000000000000000000000000000000000000
........................................................TATTGCCCATCAGGG--------------AAT---CTGTTGAAAGC.................................................................................................................................................................................................................................................29200.1530000000000000000000000000000300000000000000000000000000000000000000000000000000
.................................................................TCAGGG--------------AAT---CTGTTGAAAGCCCATGC...........................................................................................................................................................................................................................................26200.1530000000000000000000000000010020000000000000000000000000000000000000000000000000
.....................AGAAGAGCTGCAAAC----------AAGCT....................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000300000
........AACAGGAGAAACGAGAAGAGCTGCAA.....................................................................................................................................................................................................................................................................................................................26200.1530000000000000000000000000100000000000000000000000000000000000000001000100000000
.................AACGAGAAGAGCTGCAAAC----------AAGCT....................................................................................................................................................................................................................................................................................................24200.1530000000100100000000000000000000000000000000000001000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTC...................................................................................................................................................................................................................................................................................................27200.1530000000000000000000000000000030000000000000000000000000000000000000000000000000
............................................................................................TGTTGAAAGCCCATGCCTTCCA.....................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000030000000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AT.......................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000200001000000
........................................................TATTGCCCATCAGGG--------------AAT---CTGTTGAAA...................................................................................................................................................................................................................................................27200.1530000000000000000000000000000020000000000000000000000000000000000000000000010000
...............GAAACGAGAAGAGCTGCAAAC----------AATG.....................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000002010
..........CAGGAGAAACGAGAAGAGCTGC.......................................................................................................................................................................................................................................................................................................................22200.1530000001000000000000000000000011000000000000000000000000000000000000000000000000
....................................................TGCCTATTGCCCATCAGGG--------------AAT---CTGTA.......................................................................................................................................................................................................................................................27200.1020000000000000000000000000000002000000000000000000000000000000000000000000000000
.......................................................................................T---CTGTTGAAAGCCCATGCCTTC.......................................................................................................................................................................................................................................22200.1020000100000000000000000010000000000000000000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTAG..................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000010100000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAA......................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000100000000001
.............................................................CCCATCAGGG--------------AAT---CTGTTGAAAGCCC...............................................................................................................................................................................................................................................26200.1020000000000000000000000000000110000000000000000000000000000000000000000000000000
......GCAACAGGAGAAACGAGAAGAGCTGC.......................................................................................................................................................................................................................................................................................................................26200.1020000000000100000000000000000010000000000000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAGCTATGC................................................................................................................................................................................................................................................................................................30200.1020000000000000000000000000000000000000000000000000000000000000000000000000001001
........AACAGGAGAAACGAGAAGAGCTGC.......................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000010000000000000000010000000000000000000000000000000000000000
....CCGCAACAGGAGAAACGAGAAGAGCT.........................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000001001
.......................AAGAGCTGCAAAC----------AAGCTA...................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000002000000000000000
................AAACGAGAAGAGCTGCAAAC----------A........................................................................................................................................................................................................................................................................................................21200.1020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................T---CTGTTGAAAGCCCATGC...........................................................................................................................................................................................................................................18200.1020010000000000000000000010000000000000000000000000000000000000000000000000000000
.......CAACAGGAGAAACGAGAAGAGCTGCAA.....................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000002000000000000000
..................................................................CAGGG--------------AAT---CTGTTGAAAGCCCATGCCTT........................................................................................................................................................................................................................................28200.1020000000000000000000000000000100000000000000000000000000000000000010000000000000
.................AACGAGAAGAGCTGCAAAC----------AAGC.....................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000001000000000000000000000000000000000001
.....................................................................................AAT---CTGTTGAAAGCCCATGCCTTCC......................................................................................................................................................................................................................................25200.1020000000000000000000000000000200000000000000000000000000000000000000000000000000
...........AGGAGAAACGAGAAGAGCTGCAAAC----------.........................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000020000000
..............AGAAACGAGAAGAGCTGCAAAC----------AAGCTA...................................................................................................................................................................................................................................................................................................28200.1020010000000000000000000000000001000000000000000000000000000000000000000000000000
.................AACGAGAAGAGCTGCAAAC----------.........................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000002000000000000000000000000000000000
.......................................................................................T---CTGTTGAAAGCCCATGCCTTCCAA....................................................................................................................................................................................................................................25200.1020010000000000000000000000000000010000000000000000000000000000000000000000000000
......................GAAGAGCTGCAAAC----------AAGCTATGCCT..............................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000200000000000000000000000000000000000000000000000000
...........................................................TGCCCATCAGGG--------------AAT---CTGTTGAAAGCCCA..............................................................................................................................................................................................................................................29200.1020000000000000000000000000000000000000200000000000000000000000000000000000000000
......................GAAGAGCTGCAAAC----------AAGCTATGCC...............................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000200000000000000000000000000000000000000000000000000
.......................................................CTATTGCCCATCAGGG--------------AAT---CTGTTGA.....................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000200000000000000
.......CAACAGGAGAAACGAGAAGAGCTGC.......................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000010000000000000000000000000000000000000010000
.....................................................................................AAT---CTGTTGAAAGCCCATGC...........................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000200000000000000
............................................................GCCCATCAGGG--------------AAT---CTGTTGAAAGCCCA..............................................................................................................................................................................................................................................28200.1020000000000000000000000000000001000001000000000000000000000000000000000000000000
.................AACGAGAAGAGCTGCAAAC----------AAGCTA...................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000010000001000000000000000000000000000000000000000000
....................................................TGCCTATTGCCCATCAGGG--------------AAT---CTG.........................................................................................................................................................................................................................................................25200.1020000000000000000000000000020000000000000000000000000000000000000000000000000000
.....CGCAACAGGAGAAACGAGAAGAG...........................................................................................................................................................................................................................................................................................................................23200.0510000000100000000000000000000000000000000000000000000000000000000000000000000000
....................GAGAAGAGCTGCAAAC----------AAGCT....................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000010000000000000
................AAACGAGAAGAGCTGCAAAC----------AAGCTAT..................................................................................................................................................................................................................................................................................................27200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CTGTTGAAAGCCCATGCCTTCCAAC...................................................................................................................................................................................................................................25200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGGAGAAACGAGAAGAGCTGCA......................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................CCTATTGCCCATCAGGG--------------AAT---CTG.........................................................................................................................................................................................................................................................23200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
......................GAAGAGCTGCAAAC----------AAGCT....................................................................................................................................................................................................................................................................................................19200.0510000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A---------------------G---------------------CATCTTAATT-------T-----TAT-C-TTATAATA.25200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................TGTTGAAAGCCCATGCCTTCCAAT...................................................................................................................................................................................................................................24200.0510000000000000000000000001000000000000000000000000000000000000000000000000000000
.......................................................................................T---CTGTTGAAAGCCCATGCCTTCT......................................................................................................................................................................................................................................23200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
.........ACAGGAGAAACGAGAAGAGCTGCAA.....................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................TCAGGG--------------AAT---CTGTTGAAAGCCCATGCCT.........................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000100000000000000000000000000000000000000000000
...........................................................................................CTGTTGAAAGCCCATGCCTTC.......................................................................................................................................................................................................................................21200.0510000001000000000000000000000000000000000000000000000000000000000000000000000000
.......CAACAGGAGAAACGAGAAGAGC..........................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001
.....................................................................................AAT---CTGTTGAAAGCCCATGCCTT........................................................................................................................................................................................................................................23200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................AT---CTGTTGAAAGCCCATGTA..........................................................................................................................................................................................................................................20200.0510000000100000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGGG--------------AAT---CTGTTGAAAGCCCATGCCT.........................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000100000000000000000000000000000000000000000
.........ACAGGAGAAACGAGAAGAGCTGCT......................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000
A---CCGCAACAGGAGAAACGAGAAGAGC..........................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000001000000000
...................CGAGAAGAGCTGCAAAC----------AAGCTATGC................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000001000000000000000000000000000000000000000000000000
............GGAGAAACGAGAAGAGCTGCAAAC----------AAGC.....................................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001
........................AGAGCTGCAAAC----------AAGCTATGCCTAT............................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
................AAACGAGAAGAGCTGCAAAC----------AA.......................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................CAGGG--------------AAT---CTGTTGAAAGCCCATGCA..........................................................................................................................................................................................................................................26200.0510000000000000000000000000000001000000000000000000000000000000000000000000000000
..................ACGAGAAGAGCTGCAAAC----------AAGCTAT..................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000
..................ACGAGAAGAGCTGCAAAA----------.........................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001
......................GAAGAGCTGCAAAC----------AAGCTATGCCTATT...........................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................AAT---CTGTTGAAAGCCCATGCCTC........................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000010000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAGAG....................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001
........AACAGGAGAAACGAGAAGAGCT.........................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000010000
......GCAACAGGAGAAACGAGAA..............................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................AGAAGAGCTGCAAAC----------AAGCTAT..................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................GCTATGCCTATTGCCCATCAG..................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAAA.....................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001
.................AACGAGAAGAGCTGCAAAC----------AAGCTATGCCT..............................................................................................................................................................................................................................................................................................30200.0510000000000000000000000000000000000000000000000000000001000000000000000000000000
....CCGCAACAGGAGAAACGAGAAG.............................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000
...............GAAACGAGAAGAGCTGCAAAC----------AAT......................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................TCAGGG--------------AAT---CTGTTGAAAGCCCATG............................................................................................................................................................................................................................................25200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................AT---CTGTTGAAAGCCCATGCCTTC.......................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................TTGCCCATCAGGG--------------AAT---CTGTTGAAAGC.................................................................................................................................................................................................................................................27200.0510010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTGCCCATCAGGG--------------AAT---CTGTTGAAAGCCC...............................................................................................................................................................................................................................................29200.0510000000000000000000000000000001000000000000000000000000000000000000000000000000
.......CAACAGGAGAAACGAGAAGAGCTGCA......................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000001000000000000
...........AGGAGAAACGAGAAGAGCTGCAAAC----------AAG......................................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000
......GCAACAGGAGAAACGAGAAGAGCTGCA......................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000
.......CAACAGGAGAAACGAGAAGAGCT.........................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000010000
........AACAGGAGAAACGAGAAGAG...........................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000010000000
droMoj3
AAAACTGAAGCTGGCGAGATTAGAAGAGCTACAAAT----------AAGCTGTGCTTGCTGCCCCTTAAGG--------------ATT---CTGTTGAAGACTA--AGTCTTCAACGGGGG---GAGGATGTTGGGCTCAGCAATC------------AT-CGC----------T------TCATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCATA---------------------G---------------------A----------------A-----T-A---TGTTATCATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................................................................................................................CATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCATC---------------------............................................................27200.459000009
......................................................................................................................................................................................CATTGTAATTAAGA------------------------------------------G-----------CGGCAG.......................................................................................21200.255500000
...................TTAGAAGAGCTACAAAT----------AAGCTGTGC................................................................................................................................................................................................................................................................................................26150.132000002
.....................................................................................................................................................................................TCATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCA...................................................................................26200.102000002
..............CGAGATTAGAAGAGCTACAAAT----------AAG......................................................................................................................................................................................................................................................................................................25160.061100000
.....................AGAAGAGCTACAAAT----------AAGCTGTGCTTC.............................................................................................................................................................................................................................................................................................27200.051100000
.......................................................................................................................................................................................ATTGTAATTAAGA------------------------------------------G-----------CGGCAGT......................................................................................21200.051100000
............................CTACAAAT----------AAGCTGTGCTT..............................................................................................................................................................................................................................................................................................19200.051000100
......................................................................................................TA--AGTCTTCAACGGGGG---GAGGAT.....................................................................................................................................................................................................................23200.051000100
......................GAAGAGCTACAAAT----------AAGCTGTGCTT..............................................................................................................................................................................................................................................................................................25200.051100000
...............................................................................................................TCAACGGGGG---GAGGATGTTGGGC..............................................................................................................................................................................................................23200.051100000
......................................................................................................................................................................................CATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCACC---------------------............................................................27200.051000001
................................................................................................................CAACGGGGG---GAGGATGTT..................................................................................................................................................................................................................18200.051100000
.........................................................................................................................................................................................TGTAATTAAGA------------------------------------------G-----------CGGCAGTTCAT..................................................................................23200.051000100
......................................................................................................................................................................................CATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCAAT---------------------............................................................27200.051000001
.................................................................TTAAGG--------------ATT---CTGTTGAAGACT................................................................................................................................................................................................................................................21200.051000001
..............................................................................................................................................................................T------TCATTGTAATTAAGA------------------------------------------G-----------CGGCAGT......................................................................................24200.051000010
..............................................................................................................TTCAACGGGGG---GAGGATGTT..................................................................................................................................................................................................................20200.051000001
............................................................................................................TCTTCAACGGGGG---GAGGATGTTGG................................................................................................................................................................................................................24200.051000001
.......................................................................................................................................................................................ATTGTAATTAAGA------------------------------------------G-----------CGGCAGTTCATC---------------------............................................................26200.051000010
droGri2
GTATCTCACACTC----CTCTAACAGCGTACCAAACGGAAA-------------------------------------------------------------------TCTCCAGCAGTAGTAGGGAAATGGG-GATTCTATGACA------------GGAAGCAGGTTATTGCT--------------------------------------------------------------------------------------------------------------------------------T------------------T-----TTT---GATT-TTTASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
........................................................................................................................................TTCTATGACA------------GGAAGCAGGTTATTG..........................................................................................................................................................................25200.05110
........................................................................................................................................TTCTATGACA------------GGAAGCAGGTTA.............................................................................................................................................................................22200.05110
........................................................................................................................................TTCTATGACA------------GGAAGCAGGTT..............................................................................................................................................................................21200.05110
........................................................................................................................................TTCTATGACA------------GGAAGCAGGTTATC...........................................................................................................................................................................24200.05101

Generated: 10/20/2015 at 07:38 PM