dse_306

Name	Class	Family	Strand
Baggins1	LINE	LOA	+

GGATTCCTCCAAACTTGGTTGGAGAATCCCAACCGGAGAGGACTATTTCTTCCAGTAGTACGTCCTCGAGCTGTGAGAGGTTCTCAATGCTGAGGATGACTTTGGGGTACCCTCTGGTACGACCGCAACCTTAATAGCCCCAGTTACGGTCGCATATGATGG *********************************(((((......)))))((((.(((.(((((((.(((..(((((...)))))..))))))))))))))))).(((((....))))).....***********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	M054 female body	V113 male body	V114 embryo
...........AACTTGGTTGATGAGTCCCA...................................................................................................................................	20	3	4	7.00	28	10	6	11	1
...........AACTTGGTTGATGAGTCCC....................................................................................................................................	19	3	12	5.42	65	43	9	5	8
..................................................TCCAGTAGTACGTCCTCGAGCTG.........................................................................................	23	0	4	2.00	8	1	4	0	3
........CCAAACTTGGTTGGAGAATCCCAAC.................................................................................................................................	25	0	1	1.00	1	0	1	0	0
..................................................TCCAGTAGTACGTCCTCGAGCTGT........................................................................................	24	0	4	1.00	4	0	4	0	0
............ACTTGGTTGATGAGTCCCA...................................................................................................................................	19	3	19	0.79	15	7	7	0	1
..................................................TCCAGTAGTAGGTCCTCGAGCTGT........................................................................................	24	1	6	0.17	1	0	1	0	0
..................................................TCCAGTAGTACGTCCTCGAGCTA.........................................................................................	23	1	7	0.14	1	0	1	0	0
..........................TCCCAACCGGAGAGGACTATTTC.................................................................................................................	23	0	20	0.05	1	0	1	0	0
..........................................................................................................................................CCCAGTTACGGTCGCATATGA...	21	0	20	0.05	1	0	1	0	0
..................................................TCCAGTAGTTCGTCCTCGAG............................................................................................	20	1	20	0.05	1	0	1	0	0
.........................................................................................CTGAGGATGACTTTGGGGTAC....................................................	21	0	20	0.05	1	0	0	0	1
........................................................................................................................................GCCCAAGTCACGGTCGAATATGA...	23	3	20	0.05	1	0	1	0	0
......................AGAATCCCAACCGGAGAGGACTATT...................................................................................................................	25	0	20	0.05	1	0	1	0	0
.......................................................................................TGCTGAGGATGACTTTGGGGT......................................................	21	0	20	0.05	1	0	0	0	1

CCTAAGGAGGTTTGAACCAACCTCTTAGGGTTGGCCTCTCCTGATAAAGAAGGTCATCATGCAGGAGCTCGACACTCTCCAAGAGTTACGACTCCTACTGAAACCCCATGGGAGACCATGCTGGCGTTGGAATTATCGGGGTCAATGCCAGCGTATACTACC ***********************************(((((......)))))((((.(((.(((((((.(((..(((((...)))))..))))))))))))))))).(((((....))))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V113 male body	V115 head
..............................................................................CCAAGAGTTACGACTCCTACTGAAACC.........................................................	27	0	2	1.00	2	2	0	0	0
.....................................CTCCTGATAAAGAAGGTCATCAT......................................................................................................	23	0	1	1.00	1	0	0	1	0
..................................CCTCTCCTGATAAAGTAGGTCATCAT......................................................................................................	26	1	2	0.50	1	1	0	0	0
.........................................................TTTGCAGGAGCTCGACACTCT....................................................................................	21	2	4	0.50	2	2	0	0	0
..........................................................TTGCAGGAGCTCGACACTCT....................................................................................	20	1	4	0.50	2	1	1	0	0
.........................................................TTTGCAGGAGCTCGACACT......................................................................................	19	2	4	0.50	2	2	0	0	0
....................................................GTCATCATGCAGGAGCTCGACACT......................................................................................	24	0	3	0.33	1	1	0	0	0
...................................CTCTCCTGATAAAGAAGGTCATCAA......................................................................................................	25	1	3	0.33	1	0	0	0	1
.....................CTCTTAGGGTTGGCCTCTCCTGAT.....................................................................................................................	24	0	20	0.25	5	4	1	0	0
..........................................................ATGCAGGAGCTCGACACTCT....................................................................................	20	0	4	0.25	1	1	0	0	0
........................................................ATTTGCAGGAGCTCGACACTCT....................................................................................	22	3	4	0.25	1	0	1	0	0
...........................................................TGCAGGAGCTCGACACTCT....................................................................................	19	0	4	0.25	1	1	0	0	0
...................................................TGTCATCATGCAGGAGCTCGACACT......................................................................................	25	1	4	0.25	1	1	0	0	0
....................CCTCTTAGGGTTGGCCTCTCCTGAT.....................................................................................................................	25	0	20	0.15	3	0	3	0	0
.........................................................TTTGCAGGAGCTCGATACTCT....................................................................................	21	3	7	0.14	1	1	0	0	0
.TTAAGGAGGTTTGAAGCA...............................................................................................................................................	18	2	7	0.14	1	1	0	0	0
.............................................................................................................GGGAGACCATGCTGGCGTTGGAAT.............................	24	0	20	0.10	2	1	1	0	0
....................CCTCTTAGGGTTGGCCTCTCCTGA......................................................................................................................	24	0	20	0.10	2	2	0	0	0
.........................TAGGGTTGGCCTCTCCTGATA....................................................................................................................	21	0	20	0.10	2	1	1	0	0
..........................................................TTGCAGGAGCTCCACACTCT....................................................................................	20	2	11	0.09	1	1	0	0	0
............................GGTTGGCCTCTCCTGATAAAG.................................................................................................................	21	0	20	0.05	1	1	0	0	0
.....................CTCTTAGGGTTGGCCTCTCCTGATAAA..................................................................................................................	27	0	20	0.05	1	1	0	0	0
...........................GGGTTGGCCTCTCCTGATAAA..................................................................................................................	21	0	20	0.05	1	0	1	0	0
..................AACCTCTTAGGGTTGGCCTCTCCTGAT.....................................................................................................................	27	0	20	0.05	1	1	0	0	0
........................................................................................CGACTCCTACTGAAACCCCAT.....................................................	21	0	20	0.05	1	1	0	0	0
....................CCTCTTAGGGTTGGCCTCTCCTGATA....................................................................................................................	26	0	20	0.05	1	1	0	0	0
..............................................................................................................GGAGACCATGCTGGCGTT..................................	18	0	20	0.05	1	0	1	0	0
.............................................................................................................GGGAGACCATGCTGGCGTT..................................	19	0	20	0.05	1	1	0	0	0
....................CCTCTTAGGGTTGGCCTCTCCTAAT.....................................................................................................................	25	1	20	0.05	1	0	1	0	0
.............................................................................................................GGGAGACCATGCTGGCGTTGGAATT............................	25	0	20	0.05	1	0	1	0	0
.........................................................................................................AAAAGGGAGACCATGCTGGCGT...................................	22	3	20	0.05	1	0	1	0	0
.......................CTTAGGGTTGGCCTCTCCTGAT.....................................................................................................................	22	0	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_8974:1028-1189 -	dse_306	GGATTCC--------------------------------------------------------------------------------------------------------------------TCCAAACTTGGT--TGGAGAATCCCAACCGGAGAGGACTATTTCTTCCAGTAGTACGTCCTCGAGCTGTGAGAGGTTC------------------------TCAATGCTGAGGATGACTTTGGGGTACCCTCTGGTACGACCGCAACCTTAATAGCCCCAGTTACGGTCGCATATGATGG
droSim2	x:19744356-19744570 +		ACATTTCCCGCAG-TCAAGGCCTGCGGTATTTT----AAAATTG------TTTGGTCTATTGCTCATAGTACCCACGAGTTGCAGAGAAATAAAAGGTCCGCCCG-GGCAGATATCAGCAGTACCCGGGTAAGGC--TAACTAG----ACCGGGCGGACGCCACTTGC------------------------CCGGACTCTCCGTTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGCCCCCAGCCTGGCAGACA-TTCGGCA
dm3	chr3L:24309806-24309999 -		ACATTTCCCGCAG-TCAAGGCCTGCGGTATTTT----GATATTT------TTAAGTCTATTGTTCATAGTACCCACGATTTGCAGAGAAATAAACGGTC----------------------CACCCGGGTAAGGC--TAACTAG----ACCGGGCGGACGCCACTTGT------------------------CCGGACTCTCCGTTAGCGACTGGGTTAGTTG--TT-T------------------------------CC-------------TGGGCCCCCAGCCTAGCAGACT-CTCGGCA
droYak3	v2_chr2h_random_005:553820-553925 +		---------------------------------------------------------------------------------------------------------------------------CCCGCGTAAGGC--TTCTTAG----AACAGGGGGTCGCCAGGTAC-----------------------CCTGAGCTCTCCGTTTGAGACTGACCTATTTT--TTGA------------------------------CC-------------CGGGCCCTCAATCAGGCTGACT-CTCGGCA
droBia1	scf7180000302007:869-977 +		G------------------------------------------------------------------------------------------------------------------------TACCCAAAAAAGGCT-GACTTAG----AACAGGCGGTCGCCATTTGC------------------------CTGAGCTCACCGTTTGAAACTGAGTCATTTG--TTGA------------------------------CT-------------CGTGCATCCAGCCAGATTGACT-CTCGGCA
droTak1	scf7180000414779:5656-5841 +		ACTTTTTAAGAGTGTCGGACTCTACGTTTGCTTTTTTAATTATC------TTCGAATTCTCAATACTAGTTCCCACGAGCTGCGGAGAAAGGACAGGTCCAACCG-GGCAGAAATCAGCTGTACCCGGGTAAGG-----------------------------------------------------------------CACCGTTATAGACTGAGTTATTTG--TTGA------------------------------CA-------------CGGGCTCTCAGCCAGAGTGACT-CTCGGCA
droEle1	scf7180000490824:271-424 -		ACACCGGCTGCAG-GGATATTCTGCGGGTTTTT----TATACTT-------TTGTTC---------------------------------------------------------------TTTTTCGGGAAAGGCG-TAGTTAG----GACAGACGGTCGCCACTTGC------------------------CTGAACCCTCCGTTTGCGACTGGGCTATTTG--TTAA------------------------------CT-------------CGGGCCCCCAGCCAGGCTGACT-ATCGGCA
droRho1	scf7180000762481:373-503 +		TTGTTTG--------------------------------TGTTT-------TT------------------------------------------------------------ATCCGCGTTACCCGGGTAAGGCGGTAGATAG----AACAGGGGGTCGCCATCTCC------------------------CTGAGCCCACCGTTTGAGACTGAGCTAGTTG--TTGA------------------------------TC-------------CGGGCCCCCAGCCAGGCTGACT-CTTGGCA
droFic1	scf7180000453853:12538-12692 -		ACACTCGAGGCAG-GGATATCCTGCGGTACTTT----ATTGTTG------TTTG-TAT--------------------------------------------------------------ATGCCCGGGTAAGGCA-TAATTTT----GACAGGCGGTCGCCACTTGC------------------------CTGAACCCTCCGTGAGAGACTGCGCTAGTTG--TTGA------------------------------TT-------------CGGGCCCCCAGCCAGGCTGACT-ATCGGCA
droKik1	scf7180000302808:51510-51529 -		AACCTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCA-GTGAACA
droAna3	scaffold_13339:3151873-3151986 -		C--------------------------------------------------------------------------------------------------------------------GTGGCACCCGGACAGGGC--TTCTTAG----AACAGGTGGTCGCCAGGTAC-----------------------CCTGAGCTCACCGCTCGTGACCGGGCAGAGTGT-AAGT------------------------------CC-------------CAGGTCCCCAGCCAAGCTTACT-CTCGGCA
droBip1	scf7180000391370:22399-22499 -		C---------------------------------------------------------------------------------------------------------------------------------AAGGC--TTCCTAG----AACAGTGGGTCGCCAGGTAC-----------------------TCTGAGCCCACCGTTAAAGACTGGGCTGAATTTATT-G------------------------------CC-------------CGGGTCCCCAGCCAGGCTGATT-CTCGGCA
dp5	Unknown_group_50:24926-25041 +		TGC------------------------------------------------------------------------------------------------------------------ACGTTGCCCGGATAAGGCA-TACTTAG----AACAGTGGGCTGCCAAGTCC------------------------CTGAGCTCTCCGTTAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-CTCGGCA
droPer2	scaffold_86:136133-136287 -		TG----------------------CGGTGTTGT----TTGATTTTATGTTTTTGGTAGATTGCATTTTGTTCCCACGAGTAAGCGGGAAGGGGTTGGTCA-CCCGAGGC-ATAGCCCGCTT-GCCCCGGGAAGCC--TAATTTA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCCCCGGCCATAC-ATCC-CTCGGCA
droVir3	scaffold_12855:8550450-8550564 -		C--------------------------------------------------------------------------------------------------------------------GCAGTACCCGAGCAAGGC--TACATAG----AACAGGCGTTCGCCACTTGC------------------------CTGAGCTCTCCGTTCGAAACTGGGCTTGTTTTGTTGAA-----------------------------CC-------------TGGGCCCCCAGCCAGGCTGACT-CTCGGCA
droMoj3	scaffold_6540:23748949-23749063 -		C--------------------------------------------------------------------------------------------------------------------GCAATACCCGAGCAAGGC--TGCATAG----AACAGGCGATCGCCACTTGC------------------------CTGAGCTCTCCGTTTGAAACTGGGCTAGTTTTGTTGAA-----------------------------CC-------------TGGGCCCCCAGCCGGGTTGACT-CTCGGCA
droGri2	scaffold_15057:85904-86090 -		ACAAGTTCCGCAG-GGAGATCCTGCGGTATCTT----TATATTT-------AGAAAC--TTATTCATG---------------------------GATCTACCCG-GGCAGAGATCCGCAATACCCGGGTAAGGTT-GAATTAG----AACAGGCGGTCGCCATTTGC------------------------CTGAGCCCACCGTTAAAGACTGGGCTAGTTT--TTGA------------------------------TC-------------CGGGCCCCCAGCCAGGATTACT-CTCAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

GGATTCC--------------------------------------------------------------------------------------------------------------------TCCAAACTTGGT--TGGAGAATCCCAACCGGAGAGGACTATTTCTTCCAGTAGTACGTCCTCGAGCTGTGAGAGGTTC------------------------TCAATGCTGAGGATGACTTTGGGGTACCCTCTGGTACGACCGCAACCTTAATAGCCCCAGTTACGGTCGCATATGATGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................TCCAGTAGTACGTCCTCGAGCTG.................................................................................................................	23	4	2.00	8	4	0	3	1
............................................................................................................................CCAAACTTGGT--TGGAGAATCCCAAC.........................................................................................................................................................	25	1	1.00	1	1	0	0	0
........................................................................................................................................................................TCCAGTAGTACGTCCTCGAGCTGT................................................................................................................	24	4	1.00	4	4	0	0	0
........................................................................................................................................................................TCCAGTAGTACGTCCTCGAGCTA.................................................................................................................	23	7	0.14	1	1	0	0	0
................................................................................................................................................TCCCAACCGGAGAGGACTATTTC.........................................................................................................................................	23	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................................................................................CCCAGTTACGGTCGCATATGA...	21	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................................................CTGAGGATGACTTTGGGGTAC....................................................	21	20	0.05	1	0	0	1	0
............................................................................................................................................AGAATCCCAACCGGAGAGGACTATT...........................................................................................................................................	25	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................................................................TGCTGAGGATGACTTTGGGGT......................................................	21	20	0.05	1	0	0	1	0

droSim2

ACATTTCCCGCAG-TCAAGGCCTGCGGTATTTT----AAAATTG------TTTGGTCTATTGCTCATAGTACCCACGAGTTGCAGAGAAATAAAAGGTCCGCCCG-GGCAGATATCAGCAGTACCCGGGTAAGGC--TAACTAG----ACCGGGCGGACGCCACTTGC------------------------CCGGACTCTCCGTTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGCCCCCAGCCTGGCAGACA-TTCGGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	24	20	346.50	6930	0	1	53	2	0	0	1119	4549	466	526	0	1	203	10	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CG............................	26	2	323.50	647	0	0	1	0	0	0	113	472	22	31	1	0	7	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------..............................	24	2	123.00	246	0	0	0	0	0	0	26	128	32	30	1	0	27	2	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	30	19	105.58	2006	0	0	0	0	0	0	256	1162	93	364	0	0	130	1	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----A..........................................................................................................................................................................................................................................................................	23	16	90.19	1443	0	0	0	3	0	0	5	4	1	0	1	0	1240	189	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AA.........................................................................................................................................................................................................................................................................	24	16	78.25	1252	0	0	1	1	0	0	19	8	6	0	4	0	1110	103	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAAT......................................................................................................................................................................................................................................................................	27	14	74.00	1036	0	0	0	7	0	0	25	51	13	10	8	0	871	51	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGG...........................	27	2	72.00	144	0	0	0	0	0	0	13	61	7	7	0	0	54	2	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGG..........................	28	2	65.50	131	0	0	0	0	0	0	20	100	5	3	0	0	3	0	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAA......................................................................................................................................................................................................................	24	18	61.17	1101	0	0	0	0	0	0	51	358	305	349	1	0	31	6	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAA........................................................................................................................................................................................................................................................................	25	14	60.36	845	0	0	0	2	0	0	32	28	5	1	10	0	716	51	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAA.......................................................................................................................................................................................................................................................................	26	14	56.29	788	0	0	0	3	0	0	54	56	13	6	8	0	591	57	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------C.............................	25	2	44.00	88	0	0	0	0	0	0	13	37	10	12	1	0	15	0	0	0	0
..................................................................................................................................AAGGC--TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	29	20	41.00	820	0	0	0	1	0	0	62	469	47	184	2	0	55	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGC.........................	29	2	40.00	80	0	0	0	0	0	0	14	64	1	0	0	0	1	0	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGA........................................................................................................................................................................................................................	22	19	31.68	602	0	0	0	0	0	0	47	254	126	165	0	0	4	6	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	23	20	29.50	590	0	0	0	0	0	0	113	377	42	54	0	0	2	2	0	0	0
...................................................................................................................................AGGC--TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	28	20	28.75	575	0	0	0	0	0	0	61	281	20	47	3	0	161	2	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAA.......................................................................................................................................................................................................................	23	18	28.22	508	0	0	0	0	0	0	33	156	122	179	0	0	14	4	0	0	0
.............................................................GCTCATAGTACCCACGAGTTGCAGA..........................................................................................................................................................................................................................	25	15	27.07	406	0	0	0	16	0	0	134	1	60	2	192	1	0	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------C............................................	23	2	27.00	54	0	0	0	0	0	0	8	10	4	5	0	0	27	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACGC...............................................................................................................................................	26	19	23.37	444	0	0	0	1	0	0	29	184	44	64	1	0	115	6	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAATA....................................................................................................................................................................................................................	26	17	18.82	320	0	0	0	0	0	0	10	51	21	54	0	0	168	16	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAATT.....................................................................................................................................................................................................................................................................	28	13	16.54	215	0	0	0	0	0	0	2	14	0	2	0	0	183	14	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAATAAA..................................................................................................................................................................................................................	28	16	16.44	263	0	0	0	0	0	0	3	75	44	109	0	0	28	4	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----...........................................................................................................................................................................................................................................................................	22	16	16.13	258	0	0	0	0	0	0	0	0	0	0	0	0	202	56	0	0	0
....................................................................................................................................GGC--TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	27	20	11.55	231	0	0	1	0	0	0	29	136	0	28	2	0	35	0	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAATAA...................................................................................................................................................................................................................	27	17	10.88	185	0	0	0	0	0	0	6	26	15	21	0	0	97	20	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------.............................................	22	2	9.50	19	0	0	0	0	0	0	2	3	0	0	1	0	13	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGA..................................................................................................................................................	23	19	8.84	168	0	0	0	0	0	0	24	71	26	33	2	0	11	1	0	0	0
.....................................................................................................................................GC--TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	26	20	8.60	172	0	0	2	0	0	0	33	118	4	11	4	0	0	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAAA......................................................................................................................................................................................................................................................................	27	14	8.00	112	0	0	0	0	0	0	1	2	1	0	0	0	97	11	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGACTGGG........................................................................................	27	11	7.82	86	0	0	0	0	0	0	15	41	11	15	0	0	4	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	29	19	7.21	137	0	0	0	0	0	0	13	56	10	27	0	0	31	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------A............................................	23	2	7.00	14	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0
..............................................................................................................................................................................................................ATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGC.........................	27	2	6.50	13	0	0	0	0	0	0	2	4	2	2	0	0	3	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATTG------TT............................................................................................................................................................................................................................................................	26	3	6.33	19	0	0	0	0	0	0	0	0	0	0	0	0	18	1	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAATAAAA.................................................................................................................................................................................................................	29	13	5.92	77	0	0	0	0	0	0	6	42	21	5	0	0	2	1	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGACTGG.........................................................................................	26	16	5.81	93	0	0	5	0	0	0	17	40	13	18	0	0	0	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATTG------T.............................................................................................................................................................................................................................................................	25	3	5.67	17	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------A.............................	25	2	5.50	11	0	0	0	0	0	0	1	0	0	1	0	0	9	0	0	0	0
.............................................................GCTCATAGTACCCACGAGTTGCAG...........................................................................................................................................................................................................................	24	15	5.47	82	0	0	0	6	40	0	0	0	0	0	36	0	0	0	0	0	0
.............................................................................................................................CGGGTAAGGC--TAACTAG----ACCGGGCGGA..................................................................................................................................................	27	13	5.08	66	0	0	0	1	0	0	4	39	8	11	0	0	3	0	0	0	0
.............................................................GCTCATAGTACCCACGAGT................................................................................................................................................................................................................................	19	17	5.00	85	0	0	0	0	84	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................TATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CG............................	25	2	5.00	10	0	0	1	0	0	0	5	3	0	0	1	0	0	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACG................................................................................................................................................	25	19	4.84	92	0	0	0	0	0	0	3	23	8	23	0	0	31	4	0	0	0
.............................................................GCTCATAGTACCCACGAGTTGCAGAG.........................................................................................................................................................................................................................	26	15	4.67	70	0	0	0	3	0	0	2	0	1	0	64	0	0	0	0	0	0
..............................................................................................................................................................CGCCACTTGC------------------------CCGGACTCTCCGTT..................................................................................................	24	20	4.65	93	0	0	0	1	0	0	0	52	31	0	9	0	0	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAATA.....................................................................................................................................................................................................................................................................	28	14	4.43	62	0	0	0	0	0	0	0	0	0	0	0	0	56	6	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCACTTGC------------------------................................................................................................................	27	20	4.20	84	0	0	0	0	0	0	4	54	5	15	5	0	1	0	0	0	0
................................................................................................................................................................................................CCGGACTCTCCGTTATCGACTGGGC.......................................................................................	25	12	4.17	50	0	0	3	0	0	0	8	26	0	0	0	0	13	0	0	0	0
..................................................................................................................................AAGGC--TAACTAG----ACCGGGCGGACGC...............................................................................................................................................	25	20	3.95	79	0	0	0	0	0	0	7	28	6	14	1	0	22	1	0	0	0
.....................................................................................................................GCAGTACCCGGGTAAGGC--TAACTAG----A...........................................................................................................................................................	26	20	3.50	70	0	0	0	0	0	0	7	12	22	29	0	0	0	0	0	0	0
.............................................................GCTCATAGTACCCACGAGTT...............................................................................................................................................................................................................................	20	17	3.29	56	0	0	0	0	42	0	0	0	0	0	14	0	0	0	0	0	0
...................................................TTGGTCTATTGCTCATAGTACCCACGAGT................................................................................................................................................................................................................................	29	10	3.10	31	0	0	0	0	0	0	5	6	6	13	1	0	0	0	0	0	0
............................................................TGCTCATAGTACCCACGAGTTGCAGA..........................................................................................................................................................................................................................	26	15	3.07	46	0	0	0	0	0	0	8	11	8	18	1	0	0	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATTT................................................................................................................................................................................................................................................................................	21	20	3.05	61	0	0	0	0	0	0	0	0	0	0	0	0	22	39	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-............................................................................	21	2	3.00	6	0	0	0	0	0	0	0	1	0	0	1	0	3	1	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAAAA.....................................................................................................................................................................................................................................................................	28	14	3.00	42	0	0	0	0	0	0	1	0	0	0	0	0	36	5	0	0	0
.............................................................GCTCATAGTACCCACGAGTTGCAGAGA........................................................................................................................................................................................................................	27	15	2.80	42	0	0	0	8	0	0	19	0	8	0	7	0	0	0	0	0	0
...............CAAGGCCTGCGGTATTTT----AAAATTG------T.............................................................................................................................................................................................................................................................	26	3	2.67	8	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGACTGGGC.......................................................................................	28	11	2.55	28	0	0	0	1	0	0	1	10	0	0	2	0	14	0	0	0	0
.............................................................GCTCATAGTACCCACGAG.................................................................................................................................................................................................................................	18	17	2.53	43	0	0	0	0	43	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGC.........................	26	2	2.50	5	0	0	0	0	0	0	1	1	1	1	0	0	1	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACGCC..............................................................................................................................................	27	19	2.42	46	0	0	1	0	0	0	3	18	3	7	2	0	12	0	0	0	0
.................................................................................................................................................................................................CGGACTCTCCGTTATCGACTGGGC.......................................................................................	24	12	2.42	29	0	0	0	0	0	0	6	11	0	0	0	0	12	0	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCA.............................................................................................................................................	22	20	2.40	48	0	0	1	0	0	0	0	0	28	19	0	0	0	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACGCCA.............................................................................................................................................	28	19	2.37	45	0	0	1	0	0	0	2	26	4	5	0	0	6	1	0	0	0
..................................................................................................................................AAGGC--TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	28	20	2.35	47	0	0	0	0	0	0	2	21	1	12	1	0	10	0	0	0	0
...................................................................................AGAGAAATAAAAGGTCCG...........................................................................................................................................................................................................	18	18	2.28	41	0	0	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAAT.....................................................................................................................................................................................................................	25	18	2.11	38	0	0	0	0	0	0	0	5	1	3	0	0	23	6	0	0	0
..........................................................................................TAAAAGGTCCGCCCG-GGCAGATATC............................................................................................................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
.............................................................GCTCATAGTACCCACGAGTTGCA............................................................................................................................................................................................................................	23	16	2.00	32	0	0	0	4	0	0	2	0	6	3	17	0	0	0	0	0	0
...............CAAGGCCTGCGGTATTTT----AAAATTG------TT............................................................................................................................................................................................................................................................	27	3	2.00	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGT..........................	28	2	2.00	4	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AT.........................................................................................................................................................................................................................................................................	24	16	1.94	31	0	0	0	0	0	0	0	0	0	0	0	0	26	5	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGACTG..........................................................................................	25	17	1.82	31	0	0	8	0	0	0	3	12	4	4	0	0	0	0	0	0	0
.............................................................................................................................................................ACGCCACTTGC------------------------CCGGACTCTC......................................................................................................	21	20	1.75	35	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGGC--TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	27	20	1.75	35	0	0	0	0	0	0	0	16	1	1	0	0	17	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATTG------..............................................................................................................................................................................................................................................................	24	3	1.67	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
......................TGCGGTATTTT----AAAATTG------TTTGGTCTA.....................................................................................................................................................................................................................................................	27	3	1.67	5	0	0	0	0	0	0	0	1	0	1	0	0	3	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGAC.................................................................................................................................................	24	19	1.58	30	0	0	0	0	0	0	3	9	3	6	0	0	9	0	0	0	0
..........................................................................................................................................AACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	23	20	1.55	31	0	0	0	0	0	0	0	22	2	2	3	0	2	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----T..........................................................................................................................................................................................................................................................................	23	17	1.53	26	0	0	0	0	0	0	0	0	0	0	0	0	15	11	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGCC........................	30	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGG...........................	26	2	1.50	3	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0
....................................................TGGTCTATTGCTCATAGTACCCACGAGT................................................................................................................................................................................................................................	28	10	1.50	15	0	0	0	0	0	0	2	4	3	5	1	0	0	0	0	0	0
......................................................................................................................................C--TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	25	20	1.50	30	0	0	0	0	0	0	16	0	4	8	1	0	0	1	0	0	0
.............................................................................................................................................................................................................TATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGG..........................	27	2	1.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGG..........................	26	2	1.50	3	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--...............................................................................	19	2	1.50	3	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0
........................................................................................................................................................................................................TCCGTTATCGACTGGGCTAGCTA--T..............................................................................	24	2	1.50	3	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--T..............................................................................	20	2	1.50	3	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0
................................................................................TGCAGAGAAATAAAAGGTCCGCCCG-G.....................................................................................................................................................................................................	26	15	1.47	22	0	0	0	0	0	0	0	4	4	14	0	0	0	0	0	0	0
................................................................................TGCAGAGAAATAAAAGGTCCGCCCG-GGCA..................................................................................................................................................................................................	29	9	1.44	13	0	0	0	0	0	0	1	5	1	5	0	0	1	0	0	0	0
............G-TCAAGGCCTGCGGTATTTT----AAAAT......................................................................................................................................................................................................................................................................	25	14	1.43	20	0	0	0	0	0	0	0	0	0	0	0	0	19	1	0	0	0
...............................................................................................................................GGTAAGGC--TAACTAG----ACCGGGCGGA..................................................................................................................................................	25	14	1.43	20	0	0	0	0	0	0	9	1	2	7	0	0	1	0	0	0	0
....................................................................GTACCCACGAGTTGCAGA..........................................................................................................................................................................................................................	18	19	1.42	27	0	0	0	0	0	0	0	1	0	0	26	0	0	0	0	0	0
..................................................................TAGTACCCACGAGTTGCAGA..........................................................................................................................................................................................................................	20	19	1.42	27	0	0	0	0	0	0	1	13	2	7	2	0	2	0	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGACT...........................................................................................	24	20	1.40	28	0	0	1	0	0	0	3	15	3	5	1	0	0	0	0	0	0
...............CAAGGCCTGCGGTATTTT----AAAATTG------..............................................................................................................................................................................................................................................................	25	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
...........AG-TCAAGGCCTGCGGTATTTT----AAAAT......................................................................................................................................................................................................................................................................	26	14	1.29	18	0	0	0	1	0	0	0	0	0	0	1	0	16	0	0	0	0
................................................................................TGCAGAGAAATAAAAGGTCCGCCCG-GGCAGA................................................................................................................................................................................................	31	9	1.22	11	0	0	0	0	0	0	6	2	1	2	0	0	0	0	0	0	0
..........................................................................................TAAAAGGTCCGCCCG-GGCAGA................................................................................................................................................................................................	21	10	1.10	11	0	0	0	0	0	0	0	0	2	2	7	0	0	0	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGAC............................................................................................	23	20	1.10	22	0	0	0	0	0	0	4	3	9	5	1	0	0	0	0	0	0
................................................................................TGCAGAGAAATAAAAGGTCCGCCCG-GGC...................................................................................................................................................................................................	28	11	1.09	12	0	0	1	0	0	0	2	3	2	3	0	0	1	0	0	0	0
............................................................................................................................CCGGGTAAGGC--TAACTAG----ACCGGGCGGA..................................................................................................................................................	28	12	1.08	13	0	0	0	0	0	0	1	3	0	6	0	0	3	0	0	0	0
..............................................................................................................................................................CGCCACTTGC------------------------CCGGACTCTCCGTTAT................................................................................................	26	20	1.05	21	0	0	0	0	0	0	4	5	5	4	3	0	0	0	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCC..............................................................................................................................................	21	20	1.05	21	0	0	5	0	0	0	2	7	2	3	1	0	1	0	0	0	0
......................................................................................GAAATAAAAGGTCCGCCCG-GGCAGA................................................................................................................................................................................................	25	9	1.00	9	0	0	0	0	0	0	2	0	0	0	7	0	0	0	0	0	0
....................................................................................................................AGCAGTACCCGGGTAAGGC--TAACTA.................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................TCCGCCCG-GGCAGATATCAGCAGTACC...................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------..............................	28	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGT...........................	27	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGC.........................	24	2	1.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
..............TCAAGGCCTGCGGTATTTT----AAAATTG------T.............................................................................................................................................................................................................................................................	27	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................TCCGTTATCGACTGGGCTAGCTA--...............................................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................GTTATCGACTGGGCTAGCTA--TT-A------------------------------.............................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..............TCAAGGCCTGCGGTATTTT----AAAATT.....................................................................................................................................................................................................................................................................	25	14	1.00	14	0	0	0	0	0	0	0	0	0	0	0	0	13	1	0	0	0
...............................................................TCATAGTACCCACGAGTTGCAGAGAAA......................................................................................................................................................................................................................	27	18	1.00	18	0	0	0	1	0	0	2	2	3	10	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGG...........................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..............TCAAGGCCTGCGGTATTTT----AAAATTG------..............................................................................................................................................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
............................................................................................................................................................GACGCCACTTGC------------------------CCGGACTCTCCGTT..................................................................................................	26	20	1.00	20	0	0	0	0	0	0	0	9	6	4	0	0	1	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATT.................................................................................................................................................................................................................................................................................	20	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	3	16	0	0	0
............................................................TGCTCATAGTACCCACGAGTTGCAGAGA........................................................................................................................................................................................................................	28	15	0.93	14	0	0	0	1	0	0	4	3	1	5	0	0	0	0	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCACTT..........................................................................................................................................	25	20	0.90	18	0	0	0	0	0	0	2	0	5	0	1	0	9	1	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTA.....................................................................................	15	17	0.88	15	0	0	0	0	0	0	3	4	2	0	6	0	0	0	0	0	0
................................................................................TGCAGAGAAATAAAAGGTCCGCCCG-GG....................................................................................................................................................................................................	27	15	0.87	13	0	0	0	0	0	0	0	8	1	3	0	0	1	0	0	0	0
.......................GCGGTATTTT----AAAAT......................................................................................................................................................................................................................................................................	15	20	0.85	17	0	0	0	0	0	0	4	8	2	1	2	0	0	0	0	0	0
...............................................................TCATAGTACCCACGAGTTGCAGAGA........................................................................................................................................................................................................................	25	19	0.84	16	0	0	0	0	0	0	5	4	2	5	0	0	0	0	0	0	0
....................................................................................................................................................................TTGC------------------------CCGGACTCTCCGTTATCGACTGG.........................................................................................	27	15	0.80	12	0	0	1	0	0	0	3	4	2	2	0	0	0	0	0	0	0
..........CAG-TCAAGGCCTGCGGTATTTT----AAAT.......................................................................................................................................................................................................................................................................	26	14	0.79	11	0	0	0	0	0	0	1	0	0	0	0	0	8	2	0	0	0
..........CAG-TCAAGGCCTGCGGT....................................................................................................................................................................................................................................................................................	17	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0
....................................................................................................................................GGC--TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	26	20	0.75	15	0	0	0	0	0	0	2	6	2	4	0	0	1	0	0	0	0
....................................................................................................................................................................TTGC------------------------CCGGACTCTCCGTTATCGACTGGG........................................................................................	28	10	0.70	7	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TAG----ACCGGGCGGACGCCACTTGC------------------------CC..............................................................................................................	25	20	0.70	14	0	0	0	3	0	0	1	2	0	3	2	0	3	0	0	0	0
.....................................................................................................................................GC--TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	25	20	0.70	14	0	0	0	0	0	0	1	11	1	1	0	0	0	0	0	0	0
.............................................................................................................................CGGGTAAGGC--TAACTAG----ACCGGGCGG...................................................................................................................................................	26	13	0.69	9	0	0	0	0	0	0	0	1	0	1	0	0	7	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATTG------TA............................................................................................................................................................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..............................TTT----AAAATTG------TTTGGTCTATTGCT................................................................................................................................................................................................................................................	24	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATT.....................................................................................................................................................................................................................................................................	23	15	0.67	10	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0
......................TGCGGTATTTT----AAAATTG------TTTGGTC.......................................................................................................................................................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................TAGTACCCACGAGTTGCAGAGAAAA.....................................................................................................................................................................................................................	25	18	0.67	12	0	0	0	0	0	0	1	3	2	4	0	0	1	1	0	0	0
...............................TT----AAAATTG------TTTGGTCTATTGCTC...............................................................................................................................................................................................................................................	24	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................TTGC------------------------CCGGACTCTCCGTTATCGAC............................................................................................	24	20	0.65	13	0	0	2	2	0	0	0	1	4	4	0	0	0	0	0	0	0
...................................................................................................................................AGGC--TAACTAG----ACCGGGCGGACGC...............................................................................................................................................	24	20	0.65	13	0	0	0	0	0	0	2	2	3	2	1	0	3	0	0	0	0
.............................................................................................................................................................ACGCCACTTGC------------------------CCGGACTCTCCGTT..................................................................................................	25	20	0.65	13	0	0	0	1	0	0	0	9	0	3	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TA--TT-A------------------------------CA-------------CGGGCCCCCAGCCTGGCAGA..........	27	17	0.65	11	0	0	0	1	0	0	2	0	1	7	0	0	0	0	0	0	0
.........................................................................CACGAGTTGCAGAGAAATAAAAGGTC.............................................................................................................................................................................................................	26	15	0.60	9	0	0	0	0	0	0	0	4	1	1	2	0	1	0	0	0	0
..........................................................................................TAAAAGGTCCGCCCG-GGCA..................................................................................................................................................................................................	19	10	0.60	6	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0
......................TGCGGTATTTT----AAAA.......................................................................................................................................................................................................................................................................	15	19	0.58	11	0	0	0	0	0	0	4	6	1	0	0	0	0	0	0	0	0
......................TGCGGTATTTT----AAAAT......................................................................................................................................................................................................................................................................	16	19	0.58	11	0	0	0	0	0	0	3	4	1	3	0	0	0	0	0	0	0
.............................................................GCTCATAGTACCCACGAGTTGCAGT..........................................................................................................................................................................................................................	25	16	0.56	9	0	0	0	0	0	0	2	0	0	0	7	0	0	0	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCACTTG.........................................................................................................................................	26	20	0.55	11	0	0	0	0	0	0	0	2	1	2	2	0	4	0	0	0	0
.....................................................................................................................GCAGTACCCGGGTAAGGC--TAACTA.................................................................................................................................................................	24	20	0.55	11	0	0	0	0	0	0	0	2	1	0	5	0	3	0	0	0	0
.....................................................................................................................GCAGTACCCGGGTAAGGC--TAACTAG----AC..........................................................................................................................................................	27	20	0.55	11	0	0	0	1	0	0	1	1	1	1	4	0	2	0	0	0	0
.............................................................................................................................................TAG----ACCGGGCGGACGCCACTTGC------------------------CCG.............................................................................................................	26	20	0.55	11	0	0	5	3	0	0	0	0	0	1	2	0	0	0	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGACTGGGG.......................................................................................	28	11	0.55	6	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0
.........................................................................................................................TACCCGGGTAAGGC--TAACTAG----ACCG........................................................................................................................................................	25	13	0.54	7	0	0	0	0	0	0	0	1	1	2	3	0	0	0	0	0	0
................................................................................TGCAGAGAAATAAAAGGTCCGCCCG-A.....................................................................................................................................................................................................	26	15	0.53	8	0	0	0	0	0	0	0	1	2	5	0	0	0	0	0	0	0
.................................................................................................TCCGCCCG-GGCAGATATCAGCAGTAC....................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TGC------------------------CCGGACTCTCCGTTATCGA.............................................................................................	22	20	0.50	10	0	0	0	0	0	0	0	3	6	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CG............................	30	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------C.............................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............CAAGGCCTGCGGTATTTT----AAAATT.....................................................................................................................................................................................................................................................................	24	14	0.50	7	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGA..........................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATTG------TTA...........................................................................................................................................................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................AGCAGTACCCGGGTAA............................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CA............................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGG...........................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................TATCAGCAGTACCCGGGTAAGGC--.......................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................TCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGG..........................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGCC........................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................CG-GGCAGATATCAGCAGTACCCGGG...............................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................TTG------TTTGGTCTATTGCTCATAGTACA.......................................................................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------AT-------------..............................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........AG-TCAAGGCCTGCGGTATTTT----AAAA.......................................................................................................................................................................................................................................................................	25	14	0.50	7	0	0	0	0	0	0	0	1	0	0	0	0	6	0	0	0	0
...............................................................................................GGTCCGCCCG-GGCAGATATCAGCAGTAC....................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................CGGGTAAGGC--TAACTAG----ACCGGG......................................................................................................................................................	23	14	0.50	7	0	0	0	0	0	0	0	2	0	4	1	0	0	0	0	0	0
......................................................................................................................................C--TAACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	24	20	0.50	10	0	0	0	0	0	0	2	6	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................TTGC------------------------CCGGACTCTCCGTTATCGACT...........................................................................................	25	20	0.50	10	0	0	0	0	0	0	0	2	1	7	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTATCGACTGGGCTAGCTA--TT-A------------------------------C............................................	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TCAGCAGTACCCGGGTAAGGC--TA.....................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................TATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGT...........................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTATCGACTGGGCTAGCTA--TT-A------------------------------.............................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................GGGTAAGGC--TAACTAG----ACCGGGCGGA..................................................................................................................................................	26	14	0.50	7	0	0	0	0	0	0	0	5	1	1	0	0	0	0	0	0	0
.................................................................................................TCCGCCCG-GGCAGATATCAGCAGT......................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------..............................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CGGGCA........................	30	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................TCAGCAGTACCCGGGTAAGGC--TAACTAG----A...........................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------CG............................	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................AAGGCCTGCGGTATTTT----AAAATTG------TAA...........................................................................................................................................................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTATCGACTGGGCTAGCTA--...............................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------T.............................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TTATCGACTGGGCTAGCTA--TT-A------------------------------CA-------------AA............................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................TG------TTTGGTCTATTGCTCATAGTACA.......................................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGGACGCCACA...........................................................................................................................................	30	19	0.47	9	0	0	0	0	0	0	1	1	0	1	0	0	6	0	0	0	0
.................................................................................................................................TAAGGC--TAACTAG----ACCGGGCGG...................................................................................................................................................	22	19	0.47	9	0	0	0	0	0	0	1	2	0	3	0	0	3	0	0	0	0
..................................................................................................................................AAGGC--TAACTAG----ACCGGGCGGACGCC..............................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	1	2	1	2	1	0	1	1	0	0	0
.......................................................................................................................AGTACCCGGGTAAGGC--TAACTAG----AC..........................................................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	0	0	0	1	8	0	0	0	0	0	0
........................................................................................AATAAAAGGTCCGCCCG-GGCA..................................................................................................................................................................................................	21	9	0.44	4	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0
...........................................................TTGCTCATAGTACCCACGAGTTGCAGA..........................................................................................................................................................................................................................	27	14	0.43	6	0	0	0	0	0	0	2	1	2	1	0	0	0	0	0	0	0
...........................................................................................................................................ACTAG----ACCGGGCGGACGCCACTTGC------------------------................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	1	1	1	0	5	0	0	0	0	0	0
..........................................................................................................................................AACTAG----ACCGGGCGGACGCCAC............................................................................................................................................	22	20	0.40	8	0	0	0	0	0	0	3	4	0	0	1	0	0	0	0	0	0
...........................................................................................................................................ACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	22	20	0.40	8	0	0	0	0	0	0	0	4	1	0	2	0	1	0	0	0	0
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCACTTGC------------------------C...............................................................................................................	28	20	0.40	8	0	0	0	0	0	0	0	7	1	0	0	0	0	0	0	0	0
..........................................................................................................................................AACTAG----ACCGGGCGGACGCCACTTGC------------------------................................................................................................................	26	20	0.40	8	0	0	0	0	0	0	0	1	1	1	5	0	0	0	0	0	0
..................................................TTTGGTCTATTGCTCATAGTACCCACGAGT................................................................................................................................................................................................................................	30	10	0.40	4	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0
.........................................TTG------TTTGGTCTATTGCA................................................................................................................................................................................................................................................	17	5	0.40	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................GTACCCACGAGTTGCA............................................................................................................................................................................................................................	16	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
....................................................................................................................................................................TTGC------------------------CCGGACTCTCCGTTATCGACTG..........................................................................................	26	16	0.38	6	0	0	0	0	0	0	1	1	1	3	0	0	0	0	0	0	0

dm3

ACATTTCCCGCAG-TCAAGGCCTGCGGTATTTT----GATATTT------TTAAGTCTATTGTTCATAGTACCCACGATTTGCAGAGAAATAAACGGTC----------------------CACCCGGGTAAGGC--TAACTAG----ACCGGGCGGACGCCACTTGT------------------------CCGGACTCTCCGTTAGCGACTGGGTTAGTTG--TT-T------------------------------CC-------------TGGGCCCCCAGCCTAGCAGACT-CTCGGCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................TAACTAG----ACCGGGCGGACGCCACT...........................................................................................................................................	24	5	51.20	256	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	18	0	0	0	0	0	1	2	8	0	0	0	0	1	3	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	2	6	0	0	0	8	10	9	3	5	18	0	0	0	7	0	4	0	26	0	0	0	2	0	1	0	6	0	4	1	6	6	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	4	5	4	0	0	0	0	0	0	13	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	4	6	1	0	0	0	0	0
...................................................................................................................................................................................................GACTCTCCGTTAGCGACTGGGT.......................................................................................	22	2	42.00	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	19	17	9	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................T------------------------CCGGACTCTCCGTTAGCGACTGGGT.......................................................................................	26	1	32.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	4	1	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	6	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................TGCGGTATTTT----GATATTT------TTAAGTCTAT....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTGTTCATAGTACCCACGATTTTT.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGGACTCTCCGTTAGCGACTGGGTTAG....................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTAGCGACTGGGTTAGTTG--T..............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................TATTT------TTAAGTCTATTGTTCATAGTACC.......................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TAG----ACCGGGCGGACGCCACTTGT------------------------CCGG............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCCGTTAGCGACTGGGTTAGTTG--T..............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TAGTTG--TT-T------------------------------CC-------------TGGGCCCCCAGCCT................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CATTTCCCGCAG-TCAAGGCCT.........................................................................................................................................................................................................................................................................................	21	19	0.89	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0

droYak3

---------------------------------------------------------------------------------------------------------------------------CCCGCGTAAGGC--TTCTTAG----AACAGGGGGTCGCCAGGTAC-----------------------CCTGAGCTCTCCGTTTGAGACTGACCTATTTT--TTGA------------------------------CC-------------CGGGCCCTCAATCAGGCTGACT-CTCGGCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................TGAGACTGACCTATTTT--TTGA------------------------------CC-------------CGGG..........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGA------------------------------CC-------------CGGGCCCTCAATCAGGCTGAC.........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTTGAGACTGACC.......................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGAGACTGACCTATTTT--TTGA------------------------------CC-------------CG............................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGGTAC-----------------------CC...............................................................................................................	26	20	0.80	16	0	0	16	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTTAG----AACAGGGGGTCGCCAGGTA.........................................................................................................................................	25	20	0.60	12	0	12	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGGTAC-----------------------.................................................................................................................	24	20	0.55	11	0	9	2	0	0	0	0	0	0	0	0
.............................................................................................................................................TAG----AACAGGGGGTCGCCAGGTAC-----------------------CC...............................................................................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGGTAC-----------------------C................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5
..........................................................................................................................................TCTTAG----AACAGGGGGTCGCCAG............................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CTTAG----AACAGGGGGTCGCCAGGTA.........................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTTAG----AACAGGGGGTCGCCAGGT..........................................................................................................................................	24	20	0.15	3	0	2	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TTCTTAG----AACAGGGGGTCG................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.............................................................................................................................................................TCGCCAGGTAC-----------------------CCTGAGC..........................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.........................................................................................................................................TTCTTAG----AACAGGGGGTCGCCAGG...........................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAC-----------------------CCTGAGCTCTCCGTTTGAGACTGA.........................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGG...........................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTTAG----AACAGGGGGTCGCCAGGTAC-----------------------.................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CTTAG----AACAGGGGGTCGCCAGGTAC-----------------------.................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTTAG----AACAGGGGGTCGCCA.............................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTTAG----AACAGGGGGTCGCCAGGTAC-----------------------C................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TAG----AACAGGGGGTCGCCAGGTAC-----------------------C................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................GTAAGGC--TTCTTAG----AACAGGGGGT..................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGGTAA-----------------------A................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................CGCCAGGTAC-----------------------CCTGAGCTCTCCGTT..................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAAGGC--TTCTTAG----AACAGGGGGTC.................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TCGCCAGGTAC-----------------------CCTGAGCTCTCCGTT..................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTCTTAG----AACAGGGGGTCGCCAGGT..........................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GGTAC-----------------------CCTGAGCTCTCCGTTTGAGAC............................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGGTAC-----------------------CCT..............................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TTCTTAG----AACAGGGGGTCGCCAGGTA.........................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AG----AACAGGGGGTCGCCAGGTA.........................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AG----AACAGGGGGTCGCCAGGTAC-----------------------C................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TAG----AACAGGGGGTCGCCAGGTA.........................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................G----AACAGGGGGTCGCCAGGTAC-----------------------CC...............................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................CTTAG----AACAGGGGGTCGCCA.............................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TAC-----------------------CCTGAGCTCTCCGTTTGAGACT...........................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................AAGGC--TTCTTAG----AACAGGGGGT..................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................TAG----AACAGGGGGTCGCCAGGTAC-----------------------CCT..............................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTAG----AACAGGGGGTCGCCAGGTA.........................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droBia1

G------------------------------------------------------------------------------------------------------------------------TACCCAAAAAAGGCT-GACTTAG----AACAGGCGGTCGCCATTTGC------------------------CTGAGCTCACCGTTTGAAACTGAGTCATTTG--TTGA------------------------------CT-------------CGTGCATCCAGCCAGATTGACT-CTCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTTTTTAAGAGTGTCGGACTCTACGTTTGCTTTTTTAATTATC------TTCGAATTCTCAATACTAGTTCCCACGAGCTGCGGAGAAAGGACAGGTCCAACCG-GGCAGAAATCAGCTGTACCCGGGTAAGG-----------------------------------------------------------------CACCGTTATAGACTGAGTTATTTG--TTGA------------------------------CA-------------CGGGCTCTCAGCCAGAGTGACT-CTCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACACCGGCTGCAG-GGATATTCTGCGGGTTTTT----TATACTT-------TTGTTC---------------------------------------------------------------TTTTTCGGGAAAGGCG-TAGTTAG----GACAGACGGTCGCCACTTGC------------------------CTGAACCCTCCGTTTGCGACTGGGCTATTTG--TTAA------------------------------CT-------------CGGGCCCCCAGCCAGGCTGACT-ATCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGTTTG--------------------------------TGTTT-------TT------------------------------------------------------------ATCCGCGTTACCCGGGTAAGGCGGTAGATAG----AACAGGGGGTCGCCATCTCC------------------------CTGAGCCCACCGTTTGAGACTGAGCTAGTTG--TTGA------------------------------TC-------------CGGGCCCCCAGCCAGGCTGACT-CTTGGCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACACTCGAGGCAG-GGATATCCTGCGGTACTTT----ATTGTTG------TTTG-TAT--------------------------------------------------------------ATGCCCGGGTAAGGCA-TAATTTT----GACAGGCGGTCGCCACTTGC------------------------CTGAACCCTCCGTGAGAGACTGCGCTAGTTG--TTGA------------------------------TT-------------CGGGCCCCCAGCCAGGCTGACT-ATCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACCTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCA-GTGAACA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

C--------------------------------------------------------------------------------------------------------------------GTGGCACCCGGACAGGGC--TTCTTAG----AACAGGTGGTCGCCAGGTAC-----------------------CCTGAGCTCACCGCTCGTGACCGGGCAGAGTGT-AAGT------------------------------CC-------------CAGGTCCCCAGCCAAGCTTACT-CTCGGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

C---------------------------------------------------------------------------------------------------------------------------------AAGGC--TTCCTAG----AACAGTGGGTCGCCAGGTAC-----------------------TCTGAGCCCACCGTTAAAGACTGGGCTGAATTTATT-G------------------------------CC-------------CGGGTCCCCAGCCAGGCTGATT-CTCGGCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGC------------------------------------------------------------------------------------------------------------------ACGTTGCCCGGATAAGGCA-TACTTAG----AACAGTGGGCTGCCAAGTCC------------------------CTGAGCTCTCCGTTAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-CTCGGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGAC.........	27	20	6.85	137	0	109	24	0	0	0	0	4	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGC.............	23	20	6.60	132	0	123	9	0	0	0	0	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGT...................................................................................................	23	20	5.15	103	0	102	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTG...........	25	20	3.55	71	0	69	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGA..........	26	20	2.95	59	0	54	4	0	1	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-.......	28	20	2.80	56	0	47	7	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGC.............	24	20	2.65	53	0	50	1	0	0	0	0	1	1	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGC.............	25	20	2.60	52	0	34	2	0	0	0	0	15	1	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCT............	24	20	2.55	51	0	43	6	0	0	0	0	0	2	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGG.........................................................................................	22	20	2.40	48	0	42	0	0	2	0	0	4	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAG...............	21	20	2.20	44	0	36	3	0	5	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGG........................................................................................	23	20	1.95	39	0	38	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGTTT.................................................................................	25	20	1.95	39	0	21	0	0	0	0	1	15	2	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGG..............	23	20	1.85	37	0	34	3	0	0	0	0	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGTT..................................................................................................	24	20	1.60	32	0	32	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGAC.........	26	20	1.55	31	0	27	4	0	0	0	0	0	0	0
.........................................................................................................................TGCCCGGATAAGGCA-TACTTAG----AAC.........................................................................................................................................................	25	20	1.50	30	0	15	6	0	0	0	0	7	2	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAG...............	23	20	1.50	30	0	22	0	0	1	0	0	6	1	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTTT................................................................................	23	20	1.35	27	0	26	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTTTA...............................................................................	24	20	1.30	26	0	26	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTTTAT-A............................................................................	26	20	1.20	24	0	22	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAGGC.............	22	20	1.20	24	0	24	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGGC.......................................................................................	24	20	1.15	23	0	0	0	1	0	0	3	17	2	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAG...............	22	20	1.15	23	0	19	2	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................T------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-C......	26	20	1.15	23	0	20	3	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................T------------------------------AC-------------CGGGCCCCCAGCCAGGCTGAC.........	24	20	1.10	22	0	22	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTT.................................................................................	22	20	1.05	21	0	21	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-C......	29	20	1.05	21	0	15	6	0	0	0	0	0	0	0
.GC------------------------------------------------------------------------------------------------------------------ACGTTGCCCGGATAAGGCA-TACT...................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-.......	27	20	1.00	20	0	20	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGGGCTGCCAAGTCC------------------------CTGAGCTCTCCGT...................................................................................................	28	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------..............................	26	20	0.95	19	0	2	0	0	0	0	0	17	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACGACTGG.........................................................................................	26	20	0.90	18	0	17	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................TAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------..............................	25	20	0.90	18	0	1	1	0	0	0	0	15	1	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGTT..................................................................................	24	20	0.90	18	0	18	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACGACT...........................................................................................	24	20	0.85	17	0	16	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTTTTA...............................................................................	25	20	0.80	16	0	12	0	0	0	0	0	4	0	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-C......	28	20	0.80	16	0	11	4	0	0	0	0	1	0	0
...............................................................................................................................................................GCCAAGTCC------------------------CTGAGCTCTCCGT...................................................................................................	22	20	0.75	15	0	14	0	0	0	0	1	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCC.....................................................................................................	21	20	0.75	15	0	15	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCTAGTT..................................................................................	25	20	0.75	15	0	9	0	0	0	0	0	3	3	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGT...................................................................................	23	20	0.75	15	0	8	0	0	0	0	0	7	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGC.......................................................................................	19	20	0.70	14	0	9	1	0	0	0	0	3	1	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGC..................	20	20	0.65	13	0	9	1	0	0	0	0	2	1	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTTT.................................................................................	23	20	0.65	13	0	11	1	0	0	0	0	1	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGTTA.................................................................................................	25	20	0.65	13	0	10	0	0	1	0	0	0	2	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGG..............	24	20	0.65	13	0	0	5	0	2	0	0	4	2	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTG...........	26	20	0.60	12	0	11	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCT......................................................................................	21	20	0.60	12	0	11	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTG..........................................................................................	21	20	0.60	12	0	12	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................T------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-.......	25	20	0.60	12	0	12	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTT..................................................................................	22	20	0.55	11	0	10	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACA-.......	28	20	0.55	11	0	11	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TAGTTTTAT-AT------------------------------AC-------------CGGGCCCCCAGC..................	25	20	0.55	11	0	2	4	0	1	0	0	4	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAG....................................................................................	22	20	0.50	10	0	9	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................GAGCTCTCCGTTAACGACTGGGC.......................................................................................	23	20	0.50	10	0	10	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGTTTT................................................................................	26	20	0.50	10	0	6	1	0	0	0	0	3	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCTAGTTT.................................................................................	26	20	0.45	9	0	5	0	0	0	0	0	3	1	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTTTT................................................................................	24	20	0.45	9	0	4	0	0	0	0	0	5	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCA................	20	20	0.45	9	0	7	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGT...................................................................................	20	20	0.45	9	0	7	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGAA.........	27	20	0.45	9	0	7	2	0	0	0	0	0	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACGACTG..........................................................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCCAAGTCC------------------------CTGAGCTCTCCG....................................................................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
......................................................................................................................................................................CC------------------------CTGAGCTCTCCGTTAACGACTGGGC.......................................................................................	27	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCTA.....................................................................................	22	20	0.40	8	0	8	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................T------------------------------AC-------------CGGGCCCCCAGCCAGGCTGA..........	23	20	0.40	8	0	8	0	0	0	0	0	0	0	0
........................................................................................................................TTGCCCGGATAAGGCA-TACTTAG----AAC.........................................................................................................................................................	26	20	0.40	8	0	5	1	0	0	0	0	2	0	0
.............................................................................................................................................................................................................TAACGACTGGGCTAGTTTTAT-AT------------------------------A............................................	24	20	0.40	8	0	4	0	0	0	0	0	4	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCA................	22	20	0.40	8	0	7	1	0	0	0	0	0	0	0
..C------------------------------------------------------------------------------------------------------------------ACGTTGCCCGGATAAGGCA-TACT...................................................................................................................................................................	24	20	0.40	8	0	4	0	0	0	0	0	4	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGGCT......................................................................................	25	20	0.40	8	0	7	0	0	1	0	0	0	0	0
................................................................................................................................................................................................CTGAGCTCTCCGTTAACGACTGG.........................................................................................	23	20	0.40	8	0	4	0	0	0	0	0	3	1	0
................................................................................................................................................................................................CTGAGCTCTCCGTTAACGACTGGG........................................................................................	24	20	0.40	8	0	5	0	0	0	0	2	0	1	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACGAC............................................................................................	23	20	0.35	7	0	5	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCT............	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGA..........	27	20	0.35	7	0	6	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGAC.........	28	20	0.35	7	0	7	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CTGAGCTCTCCGTTAACGACTGGGC.......................................................................................	25	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTTTAT-.............................................................................	25	20	0.35	7	0	6	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCC.................	21	20	0.35	7	0	6	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCTAGT...................................................................................	24	20	0.35	7	0	5	0	0	0	0	0	2	0	0
.........................................................................................................................TGCCCGGATAAGGCA-TACTTAG----AACAG.......................................................................................................................................................	27	20	0.35	7	0	4	0	0	0	0	0	3	0	0
........................................................................................................................................................................................................................................................................................CCCAGCCAGGCTGACT-CTCGGCA	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGT.............	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTTTTAT-A............................................................................	27	20	0.30	6	0	0	0	0	0	0	0	5	1	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGTTAAC...............................................................................................	27	20	0.30	6	0	5	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CCCCCAGCCAGGCTGACT-CTCGGCA	25	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGC.......................................................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAG...............	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CTGAGCTCTCCGTTAACGACTG..........................................................................................	22	20	0.25	5	0	2	0	0	0	0	0	0	3	0
.................................................................................................................................................................................................................................T-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACA-.......	27	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGTTAAA...............................................................................................	27	20	0.25	5	0	4	1	0	0	0	0	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTC......................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAG....................................................................................	19	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCCGTTAACGACTGGGCTAGTTT.................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACT-.......	29	20	0.25	5	0	3	2	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGG..............	22	20	0.25	5	0	0	4	0	1	0	0	0	0	0
.............................................................................................................................................................CTGCCAAGTCC------------------------CTGAGCTCTCCGT...................................................................................................	24	20	0.25	5	0	4	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGGCA......................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TAGTTTTAT-AT------------------------------AC-------------CGGGCCCCCAGCC.................	26	20	0.25	5	0	3	2	0	0	0	0	0	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACGACTGGG........................................................................................	27	20	0.25	5	0	4	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................CTCCGTTAACGACTGGGCTAG....................................................................................	21	20	0.25	5	0	5	0	0	0	0	0	0	0	0
......................................................................................................................................................................CC------------------------CTGAGCTCTCCGTTAACGACTGGG........................................................................................	26	20	0.20	4	0	3	0	0	1	0	0	0	0	0
.......................................................................................................................................................................C------------------------CTGAGCTCTCCGTTAACGACTGG.........................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGTTTTA...............................................................................	27	20	0.20	4	0	3	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................CCAGCCAGGCTGACT-CTCGGC.	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AT------------------------------AC-------------CGGGCCCCCAGCCAGGC.............	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................GTCC------------------------CTGAGCTCTCCGTTAACGACT...........................................................................................	25	20	0.20	4	0	3	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................T------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACA-.......	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTAACGACTGGGCTAGTTTT................................................................................	20	20	0.20	4	0	2	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................TTAACGACTGGGCTAGTTTTAT-AT------------------------------A............................................	25	20	0.20	4	0	1	0	0	0	0	0	3	0	0
....................................................................................................................................................................................................................................................................C-------------CGGGCCCCCAGCCAGGCTGACT-C......	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCTCTCCGTTAACGACTGGGC.......................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGA.......................................................................................	19	20	0.20	4	0	2	0	0	0	0	0	2	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACGACTGGGC.......................................................................................	28	20	0.20	4	0	3	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGT...................................................................................	21	20	0.20	4	0	2	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGC..................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTGCCAAGTCC------------------------CTGAGCTCTC......................................................................................................	21	20	0.20	4	0	3	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CCCCAGCCAGGCTGACT-CTCGG..	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................CC------------------------CTGAGCTCTCCGTTAACGACTGG.........................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGAT.........	27	20	0.20	4	0	3	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................CCCAGCCAGGCTGACT-CTCGGC.	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................TGCCCGGATAAGGCA-TACTTAG----AACA........................................................................................................................................................	26	20	0.20	4	0	2	0	0	0	0	0	0	2	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCC.................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCA......................................................................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGTTAACGACTGGGCTAGTTTT................................................................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTAACGACTGGGCTAGTTTT................................................................................	21	20	0.15	3	0	1	0	0	0	0	0	2	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGTTAACGA.............................................................................................	29	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGT..............	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CCCAGCCAGGCTGACT-CTCGG..	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................C------------------------CTGAGCTCTCCGTTAACGACT...........................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------C.............................	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0
........................................................................................................................TTGCCCGGATAAGGCA-TACTTAG----............................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	3	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTT...........	25	20	0.15	3	0	1	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGTTAACGACTGGGCTAGTTT.................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTTA.................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGTA..................................................................................	24	20	0.15	3	0	1	0	0	0	0	0	2	0	0
....................................................................................................................................................................................................................TGGGCTAGTTTTAT-AT------------------------------AC-------------CGGGCC........................	24	20	0.15	3	0	1	0	0	2	0	0	0	0	0
..........................................................................................................................GCCCGGATAAGGCA-TACTTAG----AAC.........................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................AAGTCC------------------------CTGAGCTCTCCGTTAACGACT...........................................................................................	27	20	0.15	3	0	1	1	0	0	0	0	1	0	0
...............................................................................................................................................................GCCAAGTCC------------------------CTGAGCTCTCCGTT..................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------C.............................	26	20	0.15	3	0	0	1	0	0	0	0	2	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCT......................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CAGCCAGGCTGACT-CTCGGCA	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGT..........	26	20	0.15	3	0	2	1	0	0	0	0	0	0	0
.........................................................................................................................TGCCCGGATAAGGCA-TACTTAG----AA..........................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCA............	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGTTAACGACTGGGCTAGTTTTA...............................................................................	23	20	0.15	3	0	1	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTA.....................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAGCTCTCCGTTAACGACTGGG........................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGGT.......................................................................................	24	20	0.15	3	0	2	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCTAGTTTT................................................................................	27	20	0.15	3	0	1	0	0	0	0	0	1	1	0
..................................................................................................................................................................................................GAGCTCTCCGTTAACGACTGG.........................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAACG..............................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	2	0	0
................................................................................................................................................................CCAAGTCC------------------------CTGAGCTCTCCGT...................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CCCCCAGCCAGGCTGACT-CTCGGC.	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTA...........	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------CGG...........................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCCGTTAACGACTGGGCTAGTAA.................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................CGTTAACGACTGGGCTAGTTTC................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTAA................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................CAAGTCC------------------------CTGAGCTCTCCGTTAACGA.............................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................ACGTTGCCCGGATAAGGCA-TAC....................................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACC-.......	28	20	0.10	2	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------C.............................	25	20	0.10	2	0	1	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAG....................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................C------------------------CTGAGCTCTCCGTTAACGACTGGG........................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTG...........	27	20	0.10	2	0	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTGA................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGGG.......................................................................................	24	20	0.10	2	0	0	0	0	2	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGAC............................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................CAGCCAGGCTGACT-CTCGG..	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AT------------------------------AC-------------CGGGCCCCCAGCCAGG..............	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..C------------------------------------------------------------------------------------------------------------------ACGTTGCCCGGATAAGGCA-TA.....................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTAACGACTGGGCTAGTTTTAT-AT------------------------------A............................................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................TGCCCGGATAAGGCA-TACTTAG----AAA.........................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCTAGTTTTAT-AT------------------------------AC-------------CGGGCC........................	21	20	0.10	2	0	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGAGCTCTCCGTTAACGACTGGGCTAG....................................................................................	27	20	0.10	2	0	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTAAA................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTTT..........	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGACC-.......	29	20	0.10	2	0	0	1	0	0	0	0	0	1	0
.......................................................................................................................................................................C------------------------CTGAGCTCTCCGTTAACGACTGGGC.......................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGTCC------------------------CTGAGCTCTCCGTTAACGAC............................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCAA...........	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTTTAT-AT------------------------------A............................................	28	20	0.10	2	0	1	0	0	0	0	1	0	0	0
.......................................................................................................................GTTGCCCGGATAAGGCA-TACT...................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCC------------------------CTGAGCTCTCCGTTAAC...............................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AC-------------CGGGCCCCCAGCCAGGCTGA..........	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCCGTTAACGACTGGGC.......................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGC.............	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................T------------------------------AC-------------CGGGCCCCCAGCCAGGCA............	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGGCTGATA-.......	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AT-AT------------------------------AC-------------CGGGCCCCCAGCCAGA..............	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAG...................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAA...............	23	20	0.10	2	0	1	1	0	0	0	0	0	0	0
................................................................................................................................................................CCAAGTCC------------------------CTGAGCTCTCCGTTAACGAC............................................................................................	28	20	0.10	2	0	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................TAGTTTTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGG..............	29	20	0.10	2	0	1	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................TCCGTTAACGACTGGGCTAGTTTTAT-.............................................................................	26	20	0.10	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................CCCCCAGCCAGGCTGACT-CTC....	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCCAAGTCC------------------------CTGAGCTCT.......................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGC...................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAT-AT------------------------------AC-------------CGGGCCCCCAGCC.................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGTTAACGACTGGGCTAGTTTTAT-A............................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................GCCCGGATAAGGCA-TACTTAG----AACAG.......................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTAACGACTGGGCTAGTTTTAT-AT------------------------------AC-------------CG............................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CGTTAACGACTGGGCTAGTT..................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................TAAGGCA-TACTTAG----AACAG.......................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGG..............	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTAT-AT------------------------------AC-------------CGGGCCCCCAGCCAGA..............	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................TGCCAAGTCC------------------------CTGAGCTCTCCGTTAACG..............................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CCGTTAACGACTGGGCTAGTTTTAT-AT------------------------------.............................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..C------------------------------------------------------------------------------------------------------------------ACGTTGCCCGGATAAGGCA-TT.....................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGTCC------------------------CTGAGCTCTCCGTTAA................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTGCCAAGTCC------------------------CTGAGCTA........................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTCTCCGTTAACGACTGGGCA......................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CCAGCCAGGCTGACT-CTCGGCA	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCCGTTAACGACTGGGCTAGTTTTA...............................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................C-------------CGGGCCCCCAGCCAGGCTGAC.........	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TG----------------------CGGTGTTGT----TTGATTTTATGTTTTTGGTAGATTGCATTTTGTTCCCACGAGTAAGCGGGAAGGGGTTGGTCA-CCCGAGGC-ATAGCCCGCTT-GCCCCGGGAAGCC--TAATTTA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCCCCGGCCATAC-ATCC-CTCGGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCC.........................	21	1	8.00	8	4	4	0	0	0	0
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCC........................	22	1	7.00	7	3	3	1	0	0	0
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCC.......................	23	1	6.00	6	4	2	0	0	0	0
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCCCC.....................	25	1	4.00	4	0	4	0	0	0	0
........................................................................CCACGAGTAAGCGGGAAGGGG...................................................................................................................................................................................................................	21	2	3.00	6	0	3	0	0	0	3
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCCCCGG...................	27	1	3.00	3	0	2	0	0	0	1
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCCC......................	24	1	3.00	3	0	3	0	0	0	0
...............................................................................................................................................A----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCC.........................	20	1	2.00	2	0	1	0	0	0	1
..............................................................................................................................................TA----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGG...........................	19	1	2.00	2	0	2	0	0	0	0
................................................................TTTTGTTCCCACGAGTAAGCGGG.........................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
....................................................TGGTAGATTGCATTTTGTTCCCACGAG.................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
................................................................TTTTGTTCCCACGAGTAAGCGG..........................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
........................................................................CCACGAGTAAGCGGGAAGG.....................................................................................................................................................................................................................	19	2	1.50	3	0	3	0	0	0	0
...............................................................................................................................................A----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGCCCCCC.....................	24	1	1.00	1	0	1	0	0	0	0
...........................................................TTGCATTTTGTTCCCACGAG.................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................CCACGAGTAAGCGGGAAGGGGTTG................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................TTTTGTTCCCACGAGTAAGCGGGA........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................A----AACTGGATGTCGG---------------------------------------------------------------------------------------------------C-------------AGGC..........................	19	1	1.00	1	0	1	0	0	0	0
............................................................................GAGTAAGCGGGAAGGGGTTG................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............................................................................TAAGCGGGAAGGGGTTGGTCA-CCCGAG.....................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................CGAGTAAGCGGGAAGGGGT..................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1
........................................................................CCACGAGTAAGCGGGAAGGG....................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
........................................................................CCACGAGTAAGCGGGAAGGGGT..................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
.......................................................................CCCACGAGTAAGCGGGAAGGG....................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1
.........................................................................CACGAGTAAGCGGGAAGGG....................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1
........................................................................CCACGAGTAAGCGGGAAGGC....................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0

droVir3

C--------------------------------------------------------------------------------------------------------------------GCAGTACCCGAGCAAGGC--TACATAG----AACAGGCGTTCGCCACTTGC------------------------CTGAGCTCTCCGTTCGAAACTGGGCTTGTTTTGTTGAA-----------------------------CC-------------TGGGCCCCCAGCCAGGCTGACT-CTCGGCA

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

C--------------------------------------------------------------------------------------------------------------------GCAATACCCGAGCAAGGC--TGCATAG----AACAGGCGATCGCCACTTGC------------------------CTGAGCTCTCCGTTTGAAACTGGGCTAGTTTTGTTGAA-----------------------------CC-------------TGGGCCCCCAGCCGGGTTGACT-CTCGGCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ACAAGTTCCGCAG-GGAGATCCTGCGGTATCTT----TATATTT-------AGAAAC--TTATTCATG---------------------------GATCTACCCG-GGCAGAGATCCGCAATACCCGGGTAAGGTT-GAATTAG----AACAGGCGGTCGCCATTTGC------------------------CTGAGCCCACCGTTAAAGACTGGGCTAGTTT--TTGA------------------------------TC-------------CGGGCCCCCAGCCAGGATTACT-CTCAGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................TAGTTT--TTGA------------------------------TC-------------CGGGCCCCCA....................	22	20	0.05	1	0	1

dse_306

scaffold_8974:1078-1139 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.7	-33.7	-33.6