dse_282

AGATTCCATTTCATCAAGTCCAAAAAGTAGCACCTTGTAGGGTTTAACATTTTTATCAGCGTAGGAGAAGAATTCGAATTTCCCCTTTAATGAAGCACACGCGGATTCATAGTCTTTTATGTCCATACAGAAAAGTTTAATTCCAATAGACATTTTTTTAATAGAGTATTTGGAGCAATTAA *********************************....(((((.(((.(((((((..((((((((((.(((((((........((((...))))......)))))))....))))))))))..)))..)))).))).)))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V115 head	V113 male body
..................................................TTTTATCAGCGTAGGAGAAGAATTC...........................................................................................................	25	0	2	37.50	75	68	7	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATT............................................................................................................	24	0	3	14.67	44	32	10	2	0
..................................................TTTTATCAGCGTAGGAGAAGAAT.............................................................................................................	23	0	3	12.33	37	22	15	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGAGT...............	25	0	4	9.75	39	6	27	5	1
..............................................................................................................................................CCAATAGACATTTTTTTAATAGAGTA..............	26	0	4	6.25	25	9	15	1	0
...................................................TTTATCAGCGTAGGAGAAGAATTC...........................................................................................................	24	0	2	6.00	12	12	0	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGAGTATT............	28	0	3	1.33	4	3	0	0	1
..................................................TTTTATCAGCGTAGGAGAAGAA..............................................................................................................	22	0	3	1.33	4	2	2	0	0
..............................................................................TTTCCCCTTTAATGAAGCACACGCGGA.............................................................................	27	0	1	1.00	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTCG..........................................................................................................	26	0	1	1.00	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATT............................................................................................................	25	0	3	1.00	3	3	0	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGAG................	24	0	4	0.75	3	1	2	0	0
...................................................TTTATCAGCGTAGGAGAAGAAT.............................................................................................................	22	0	3	0.67	2	1	1	0	0
.........TTCATCAAGTCCAAAAAGTAGCACCTTG.................................................................................................................................................	28	0	2	0.50	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATTC...........................................................................................................	26	0	2	0.50	1	0	1	0	0
........TTTCATCAAGTCCAAAAAGTAGCACCTTG.................................................................................................................................................	29	0	2	0.50	1	1	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTC...........................................................................................................	23	0	2	0.50	1	1	0	0	0
..................................................TTTTATCAGCGCAGGAGAAGAATTC...........................................................................................................	25	1	2	0.50	1	1	0	0	0
...................................................TTTATTAGCGTAGGAGAAGAATTC...........................................................................................................	24	1	2	0.50	1	1	0	0	0
.............................................................................................................................................TCCAATAGACATTTTTTTAATAGAGT...............	26	0	4	0.50	2	0	2	0	0
...................................................TTTATCAGCGTAGGAGAATAATTC...........................................................................................................	24	1	2	0.50	1	1	0	0	0
..................................................TTTTATCACCGTAGGAGAAGAATTC...........................................................................................................	25	1	2	0.50	1	1	0	0	0
..................................................TTTTGTCAGCGTAGGAGAAGAAT.............................................................................................................	23	1	3	0.33	1	0	1	0	0
.........................................................................................................TTCATAGTCTTTTATGTCCATACAGA...................................................	26	0	3	0.33	1	1	0	0	0
..................................................CTTTATCAGCGTAGGAGAAGAATT............................................................................................................	24	1	3	0.33	1	0	0	1	0
.................................................TTTTTATCAGCGTAGGAGAAGAAT.............................................................................................................	24	0	3	0.33	1	1	0	0	0
...............................................................................................................................................CAATAGACATTTTTTTAATAGAGTAT.............	26	0	3	0.33	1	0	1	0	0
...................................................TTCATCAGCGTAGGAGAAGAAT.............................................................................................................	22	1	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATC............................................................................................................	24	1	3	0.33	1	1	0	0	0
...................................................TTTATCAGCGTAGGAGAAGAATT............................................................................................................	23	0	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGATAAGAATT............................................................................................................	24	1	3	0.33	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAA..............................................................................................................	23	0	3	0.33	1	0	1	0	0
.....................................................TATCAGCGTAGGAGAAGAATT............................................................................................................	21	0	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAG................................................................................................................	20	0	3	0.33	1	1	0	0	0
.........................................................................................................................TCCATACAGAAAAGTTTAATT........................................	21	0	3	0.33	1	1	0	0	0
......................................................ATCAGCGTAGGAGAAGAATT............................................................................................................	20	0	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTT...........................................................................................................	25	1	3	0.33	1	1	0	0	0
.............................................AACATTTTTATCAGCGTAGGAGAAGAAT.............................................................................................................	28	0	3	0.33	1	1	0	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGAGTAT.............	27	0	3	0.33	1	1	0	0	0
...................................................TTTATCAGCGTAGGAGAAGA...............................................................................................................	20	0	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGA...............................................................................................................	21	0	3	0.33	1	0	1	0	0
.................................................................................................................................................ATAGACATTTTTTTAATAGAGTA..............	23	0	4	0.25	1	1	0	0	0
................................................................................................................................................AATAGACATTTTTTTAATAGAGT...............	23	0	4	0.25	1	0	1	0	0
...............................................................................................................................................CAATAGACATTTTTTTAATAGA.................	22	0	4	0.25	1	1	0	0	0
..............................................................................................................................................CCAATAGACATTTTTTTA......................	18	0	4	0.25	1	0	1	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGA.................	23	0	4	0.25	1	1	0	0	0
..................................................................................................................................................TAGACATTTTTTTAATAGAGT...............	21	0	4	0.25	1	0	1	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGTGT...............	25	1	4	0.25	1	1	0	0	0
..............................................................................................................................................CCAATAGACATTTTTTTAATAGAGTC..............	26	1	4	0.25	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAA................................................................................................................	20	1	4	0.25	1	0	1	0	0
...................................................................................................................TTTATGTCCGTACAGAAAAGTTTTTT.........................................	26	3	4	0.25	1	1	0	0	0
................................................ATTTTTATCACAGTAGGAG...................................................................................................................	19	2	7	0.14	1	0	1	0	0

TCTAAGGTAAAGTAGTTCAGGTTTTTCATCGTGGAACATCCCAAATTGTAAAAATAGTCGCATCCTCTTCTTAAGCTTAAAGGGGAAATTACTTCGTGTGCGCCTAAGTATCAGAAAATACAGGTATGTCTTTTCAAATTAAGGTTATCTGTAAAAAAATTATCTCATAAACCTCGTTAATT **********************************....(((((.(((.(((((((..((((((((((.(((((((........((((...))))......)))))))....))))))))))..)))..)))).))).)))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V115 head
...................................ACATCCCAAATTGTAAAAATAGTCG..........................................................................................................................	25	0	1	2.00	2	2	0	0
.............................................................................................................................ATGTCTTTTCAAATTAAGGTTATCTGT..............................	27	0	3	2.00	6	6	0	0
..............................................................................................................................TGTCTTTTCAAATTAAGGTTATCTGT..............................	26	0	3	1.67	5	5	0	0
................................AGAACATCCCAAATTGTAAAAATAGTCG..........................................................................................................................	28	1	1	1.00	1	1	0	0
..........................................................................................ACTTCGTGTGCGCCTAAGTCTCAGAA..................................................................	26	1	2	0.50	1	1	0	0
.............................................................................................TCGTGTGCGCCTAAGTATCAGAAAATA..............................................................	27	0	2	0.50	1	1	0	0
................................................................................................................................TCTTTTCAAATTAAGGTTATCTGT..............................	24	0	3	0.33	1	0	0	1
....................................................................................................................................................CTGTAAAAAAATTATCTCATAAACCT........	26	0	3	0.33	1	1	0	0
.............................................................................................................................ATGTCTTTTAAAATTAAGGTTATCTGT..............................	27	1	3	0.33	1	1	0	0
.......TAAAGTAGTTCAGGTTTTTCATCGT......................................................................................................................................................	25	0	3	0.33	1	0	1	0
...............................................................................................................................GTCTTTTCAAATTAAGGTTATCTG...............................	24	0	3	0.33	1	1	0	0
..............................................................................................................................................GGTTATCTGTAAAAAAATTATCTCAT..............	26	0	4	0.25	1	1	0	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_3480:1373-1554 -	dse_282	AGATTCCATTTCATCAAGTCCAAAAAGTAGCACCTTGTAGGGTTTAACATTTTTATCAGCGTAGGAGAAGAATTCGAATTTC---CCCTTTAATGAAGCACACGCGGATTCATAGTCTTTTA--TGTCCATACAGAAAAGTTTAATTCCAATAGACATTTTTTTAATAGAGTATTTGGAGCAATTA-A
droSim2	node_14946:1386-1567 +		AGGGTCCATTTCATCAAGTCCAAAAAGTAGGACCTTGTAGGGTTTAACATTTTTATCAGCGTAGGAGAAGAATTCAAATTTC---CCCTTTAATGAAGCACACGCGTATTCATAGTCTTTTA--TGTCCATACAGAAAAGTTTAATTCCAATAGACATTTTTTTAATAGAGTATTTGGAGCAATTA-A
dm3	chr2L:22696915-22697010 +		TTC-----------------------------------------------------------------------------------TTTTTAGATGAGTTCAGATTGCTTCAAAGCTTTTAA--TATCAGTGAAGTGCAGCTTTACTTCACTAGAAATTTTTTTGATGGAGTAATC--T----TGA-A
droEre2	scaffold_4845:115140-115319 -		ACAGGGT-ATTTATCAAGGCCCGAAAGTACTGCCTTATATGGCTTATTGTTTTTAGAGATATAAGAAAAGAACTCATATTTAAGCATTTTAAGCTTGGCACAGATTAGATCAAACATTTTTG--CGCCATTAAGAAATATCTTAATACCAATGGAAATGGTTTTGAAGCAATAAT-----CAGTTATA
droEug1	scf7180000407629:1051-1227 +		GGGT---AGTTTGTCAAGACCAGAAAGTACCGCCTTGTAAGGTTTGATATTTTTGCAATCGTACGAATAGAATTTGCATTTGAGATCACGCAGCTGAGTGCAAATTTTATTGTAGTTTTCTT--CACCTGTGGTAAATATTTTGATACCAATAGATATGGTTTTGATATAGTAGT-----CACTTA-T
droFic1	scf7180000453918:7612-7791 -		ATTTGGTAGTTTGTCAAGACCAGAGAGTACCGCCTTGTAAGGTTTGGTCTTTTTGCAATCGTACGAAGAGAATTCGCATTTGAGATCACGCAGCTGAGTGCAAATTTTATTGTAGTTTTCTT--CACCTGTGGTGAATATTTTAATACCAATAGATATGGTTTTGATTTAGTAGT-----CACTTA-T
droBip1	scf7180000394942:9480-9646 +		GGAT-GGTCACTATCAAGATCCATAAGAATAGCTTTATACGGTTTTTCATTTTAAATTGCATAGGAAAAGAATTCATATTT-----------------TGCAGGCTTTCATGTAGTCACTCATCGCTCATCACAGTAAAGTTTGATTCCAAGCGGAATTTTTTTAATTGAATAGT--GTTCCATAA-A
dp5	Unknown_group_143:4931-5110 +		GGGATCCTCCTTATCCAAACCCGATAGCAATGCTTTATAGGGCTTATATTTTTTATCGGCAAAAGAGAAATATTGAAATTTG---CCCTTCATCATGTTACAAGCGGCTTCATAGTCTGTAA--AGTCCACACAGTGGAACTTAATACCAATTAAAATCTTTTTAATGGAGTATT--GAGTAATTT-A
droPer2	scaffold_2006:7146-7325 -		GGGATCCTCCTTATCCAAACCCGATAGCAATGCTTTATAGGGCTTATATTTTTTATCGGCAAAAGAGAAATATTGAAATTTG---CCCTTCATCATGTTACAAGCGGCTTCATAGTCTGTAA--AGTCCACACAGTGGAACTTAATACCAATTAAAATCTTTTTAATGGAGTATT--GAGTAATTT-A
droWil2	scf2_1100000004949:2139573-2139754 -		AGGGTCTAATCTATCCAGTCGAAACAGAAGAGCTTTGTAGGGCTTTTCATCTTTGTTGGCGTAGGAAAAAAATGCATGCTTT---CCCTTTAGCATTGTGCAAGCTGCTTCGTAGTCTTTCA--AGTCAGCACAATGAAGTTTAACACCAATTGATATTTTTTTAATCGAATATTTTGTGCAGTTT-A
droMoj3	scaffold_6540:7254485-7254666 +		GGGATCCATTTTATCTAGCCCCAACAGCAGTGCTTTGTATGGCCTGTCATTTTTATCGGCGTAGGAGAAATATTCAAATTTT---CCATGCATTACACTGCACGCGGCTTTATGGTCATTTA--TATCGACGCAGTGGAGCTTGATTCCAATTGAAATCTTTTTGATGGAATATTTAGTGCAATTA-A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

AGATTCCATTTCATCAAGTCCAAAAAGTAGCACCTTGTAGGGTTTAACATTTTTATCAGCGTAGGAGAAGAATTCGAATTTC---CCCTTTAATGAAGCACACGCGGATTCATAGTCTTTTA--TGTCCATACAGAAAAGTTTAATTCCAATAGACATTTTTTTAATAGAGTATTTGGAGCAATTA-A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................TTTTATCAGCGTAGGAGAAGAATTC.................................................................................................................	25	2	37.50	75	68	0	7	0
..................................................TTTTATCAGCGTAGGAGAAGAATT..................................................................................................................	24	3	14.67	44	32	0	10	2
..................................................TTTTATCAGCGTAGGAGAAGAAT...................................................................................................................	23	3	12.33	37	22	0	15	0
...................................................................................................................................................CCAATAGACATTTTTTTAATAGAGT................	25	4	9.75	39	6	1	27	5
...................................................................................................................................................CCAATAGACATTTTTTTAATAGAGTA...............	26	4	6.25	25	9	0	15	1
...................................................TTTATCAGCGTAGGAGAAGAATTC.................................................................................................................	24	2	6.00	12	12	0	0	0
...................................................................................................................................................CCAATAGACATTTTTTTAATAGAGTATT.............	28	3	1.33	4	3	1	0	0
..................................................TTTTATCAGCGTAGGAGAAGAA....................................................................................................................	22	3	1.33	4	2	0	2	0
..............................................................................TTTC---CCCTTTAATGAAGCACACGCGGA................................................................................	27	1	1.00	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTCG................................................................................................................	26	1	1.00	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATT..................................................................................................................	25	3	1.00	3	3	0	0	0
...................................................................................................................................................CCAATAGACATTTTTTTAATAGAG.................	24	4	0.75	3	1	0	2	0
...................................................TTTATCAGCGTAGGAGAAGAAT...................................................................................................................	22	3	0.67	2	1	0	1	0
.........TTCATCAAGTCCAAAAAGTAGCACCTTG.......................................................................................................................................................	28	2	0.50	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATTC.................................................................................................................	26	2	0.50	1	0	0	1	0
........TTTCATCAAGTCCAAAAAGTAGCACCTTG.......................................................................................................................................................	29	2	0.50	1	1	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTC.................................................................................................................	23	2	0.50	1	1	0	0	0
..................................................................................................................................................TCCAATAGACATTTTTTTAATAGAGT................	26	4	0.50	2	0	0	2	0
............................................................................................................TTCATAGTCTTTTA--TGTCCATACAGA....................................................	26	3	0.33	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAAT...................................................................................................................	24	3	0.33	1	1	0	0	0
....................................................................................................................................................CAATAGACATTTTTTTAATAGAGTAT..............	26	3	0.33	1	0	0	1	0
..................................................TTTTATCAGCGTAGGAGAAGAATC..................................................................................................................	24	3	0.33	1	1	0	0	0
...................................................TTTATCAGCGTAGGAGAAGAATT..................................................................................................................	23	3	0.33	1	1	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAA....................................................................................................................	23	3	0.33	1	0	0	1	0
.....................................................TATCAGCGTAGGAGAAGAATT..................................................................................................................	21	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAG......................................................................................................................	20	3	0.33	1	1	0	0	0
..............................................................................................................................TCCATACAGAAAAGTTTAATT.........................................	21	3	0.33	1	1	0	0	0
......................................................ATCAGCGTAGGAGAAGAATT..................................................................................................................	20	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTT.................................................................................................................	25	3	0.33	1	1	0	0	0
.............................................AACATTTTTATCAGCGTAGGAGAAGAAT...................................................................................................................	28	3	0.33	1	1	0	0	0
...................................................................................................................................................CCAATAGACATTTTTTTAATAGAGTAT..............	27	3	0.33	1	1	0	0	0
...................................................TTTATCAGCGTAGGAGAAGA.....................................................................................................................	20	3	0.33	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGA.....................................................................................................................	21	3	0.33	1	0	0	1	0
......................................................................................................................................................ATAGACATTTTTTTAATAGAGTA...............	23	4	0.25	1	1	0	0	0
.....................................................................................................................................................AATAGACATTTTTTTAATAGAGT................	23	4	0.25	1	0	0	1	0
....................................................................................................................................................CAATAGACATTTTTTTAATAGA..................	22	4	0.25	1	1	0	0	0
...................................................................................................................................................CCAATAGACATTTTTTTA.......................	18	4	0.25	1	0	0	1	0
...................................................................................................................................................CCAATAGACATTTTTTTAATAGA..................	23	4	0.25	1	1	0	0	0
.......................................................................................................................................................TAGACATTTTTTTAATAGAGT................	21	4	0.25	1	0	0	1	0
...................................................................................................................................................CCAATAGACATTTTTTTAATAGAGTC...............	26	4	0.25	1	1	0	0	0
..................................................TTTTATCAGCGTAGGAGAAA......................................................................................................................	20	4	0.25	1	0	0	1	0

droSim2

AGGGTCCATTTCATCAAGTCCAAAAAGTAGGACCTTGTAGGGTTTAACATTTTTATCAGCGTAGGAGAAGAATTCAAATTTC---CCCTTTAATGAAGCACACGCGTATTCATAGTCTTTTA--TGTCCATACAGAAAAGTTTAATTCCAATAGACATTTTTTTAATAGAGTATTTGGAGCAATTA-A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................TATCAGCGTAGGAGAAGAATTCAAATT............................................................................................................	27	2	529.50	1059	0	0	0	0	0	0	12	921	16	104	1	0	5	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAATAGA.................................	28	3	163.33	490	0	0	0	0	0	0	334	47	100	9	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAATTT...........................................................................................................	28	2	155.00	310	0	0	0	0	0	0	5	250	4	49	1	0	1	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAAT.............................................................................................................	26	2	118.50	237	0	2	2	0	0	0	0	154	5	60	4	0	8	2	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAA..............................................................................................................	25	2	99.50	199	0	0	0	0	0	0	3	98	4	76	2	0	12	4	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	26	3	54.67	164	0	0	0	1	0	0	21	22	60	57	1	0	2	0	0	0	0
........TTTCATCAAGTCCAAA....................................................................................................................................................................	16	3	51.00	153	0	0	0	0	0	0	21	124	8	0	0	0	0	0	0	0	0
..................................................................................................................................TACAGAAAAGTTTAATTCCAATAGA.................................	25	3	41.00	123	0	0	0	0	0	0	3	107	0	13	0	0	0	0	0	0	0
........TTTCATCAAGTCCAAAAAGTAGGA............................................................................................................................................................	24	1	31.00	31	0	0	0	0	0	0	15	11	5	0	0	0	0	0	0	0	0
...................................TGTAGGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	28	3	26.33	79	0	0	0	0	0	0	10	3	46	20	0	0	0	0	0	0	0
............................................TAACATTTTTATCAGCGTAGGAGAAGAA....................................................................................................................	28	2	21.00	42	0	0	0	0	0	0	1	21	2	18	0	0	0	0	0	0	0
.................................................................................................................................ATACAGAAAAGTTTAATTCCAATAGA.................................	26	3	17.00	51	0	0	0	0	0	0	0	48	0	3	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAA...............................................................................................................	24	2	16.00	32	0	0	0	0	0	0	0	12	1	11	0	0	4	4	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTC.................................................................................................................	22	2	15.00	30	0	0	0	0	0	0	1	8	0	10	0	0	4	7	0	0	0
......................................AGGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	25	3	14.00	42	0	0	0	0	0	0	14	9	12	7	0	0	0	0	0	0	0
.......................................................TCAGCGTAGGAGAAGAATTCAAATTT...........................................................................................................	26	2	13.50	27	0	0	0	0	0	0	4	8	5	10	0	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAGC................................................................................................................................	26	3	13.33	40	0	0	0	0	0	0	8	3	24	5	0	0	0	0	0	0	0
............................................................................................................TTCATAGTCTTTTA--TGTCCATACAGA....................................................	26	3	12.67	38	0	0	0	0	0	0	7	4	19	8	0	0	0	0	0	0	0
......................................AGGGTTTAACATTTTTATCAGCGTAGGA..........................................................................................................................	28	3	12.67	38	0	0	0	0	0	0	12	15	7	4	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCA................................................................................................................	23	2	11.50	23	0	0	0	0	0	0	0	7	2	7	0	0	2	5	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	29	3	11.33	34	0	0	0	0	0	0	8	3	20	3	0	0	0	0	0	0	0
......................................................ATCAGCGTAGGAGAAGAATTCAAATTT...........................................................................................................	27	2	10.00	20	0	0	0	0	0	0	4	1	3	12	0	0	0	0	0	0	0
......................................................ATCAGCGTAGGAGAAGAATTCAAATT............................................................................................................	26	2	9.00	18	0	0	0	0	0	0	1	2	2	13	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAAA.............................................................................................................	26	2	9.00	18	0	0	0	0	0	0	0	1	1	4	0	0	6	6	0	0	0
..............................................................................................................................................................TTTTTTAATAGAGTATTTGGAGCAATT...	27	3	8.00	24	0	0	0	0	0	0	1	6	13	3	0	0	1	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAGAAGAA....................................................................................................................	29	2	7.00	14	0	0	0	0	0	0	0	8	2	4	0	0	0	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAATA...................................	26	3	6.33	19	0	0	0	0	0	0	14	1	4	0	0	0	0	0	0	0	0
................................................................................................................................................................TTTTAATAGAGTATTTGGAGCAATT...	25	3	6.00	18	0	0	0	0	0	0	0	4	8	6	0	0	0	0	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATTC.................................................................................................................	26	2	6.00	12	0	0	0	0	0	0	1	2	2	7	0	0	0	0	0	0	0
.....................................................................................................................TTTTA--TGTCCATACAGAAAAGTTTAA...........................................	26	4	5.75	23	0	0	0	0	0	0	0	7	1	15	0	0	0	0	0	0	0
.............................................................................................................TCATAGTCTTTTA--TGTCCATACAGA....................................................	25	3	5.67	17	0	0	0	0	0	0	0	2	0	15	0	0	0	0	0	0	0
................................................................................................................................CATACAGAAAAGTTTAATTCCAATAGA.................................	27	3	5.00	15	0	0	0	0	0	0	2	9	4	0	0	0	0	0	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTCAAATT............................................................................................................	28	2	3.50	7	0	0	0	0	0	0	1	4	0	2	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAAAA............................................................................................................	27	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATT..................................................................................................................	21	3	3.33	10	0	0	0	0	0	0	0	1	0	0	1	0	0	8	0	0	0
...............................................................................................................................................................TTTTTAATAGAGTATTTGGAGCAATT...	26	3	3.00	9	0	0	0	0	0	0	1	3	1	4	0	0	0	0	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTCAAAT.............................................................................................................	27	2	3.00	6	0	0	0	0	0	0	1	2	1	2	0	0	0	0	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTAGGA..........................................................................................................................	29	3	3.00	9	0	0	0	0	0	0	4	1	4	0	0	0	0	0	0	0	0
..................TCCAAAAAGTAGGACCTTGTAGGGTT................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
.............................................................................................................................................................TTTTTTTAATAGAGTATTTGGAGCAA.....	26	1	3.00	3	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0
..............................................................................TTTC---CCCTTTAATGAAGCACACGCGTA................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
.............................................AACATTTTTATCAGCGTAGGAGAAGAA....................................................................................................................	27	2	3.00	6	0	0	0	0	0	0	0	3	1	2	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAAAAA...........................................................................................................	28	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	0	0
..............................................................................................................................................TAATTCCAATAGACATTTTTTTAATAGA..................	28	1	3.00	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
........TTTCATCAAGTCCAAAAAGTAGGACC..........................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGTTTAATTCCAATA...................................	16	3	2.67	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
...................................................TTTATCAGCGTAGGAGAAGAATTC.................................................................................................................	24	2	2.50	5	0	0	0	0	0	0	0	1	1	2	0	0	1	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAGAAGA.....................................................................................................................	28	2	2.50	5	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0
.......................................................TCAGCGTAGGAGAAGAATTCAAATT............................................................................................................	25	2	2.50	5	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0
....TCCATTTCATCAAGTCCAAA....................................................................................................................................................................	20	2	2.50	5	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAA.....................................	24	3	2.33	7	0	0	0	0	0	0	6	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................TCCATACAGAAAAGTTTAATTCCAATAGA.................................	29	3	2.33	7	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAAT...................................................................................................................	20	3	2.33	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGAGCAATTA-.	23	3	2.33	7	0	0	0	0	0	0	1	0	0	1	5	0	0	0	0	0	0
......................................................ATCAGCGTAGGAGAAGAATTCAAAT.............................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTC.................................................................................................................	25	2	2.00	4	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	0	0
.......................................GGGTTTAACATTTTTATCAGCGTAGGA..........................................................................................................................	27	3	2.00	6	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAATA............................................................................................................	27	2	2.00	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................TACAGAAAAGTTTAATTCCAATAGACA...............................	27	3	2.00	6	0	0	0	0	0	0	1	3	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................CATTTTTTTAATAGAGTATTTGGAGCAA.....	28	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................TTTTTTAATAGAGTATTTGGAGCAAT....	26	3	2.00	6	0	0	0	0	0	0	3	1	1	1	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGA........................................................................................................................	15	6	2.00	12	0	0	0	0	0	0	0	1	0	0	11	0	0	0	0	0	0
........................................................CAGCGTAGGAGAAGAATTCAAATTT...........................................................................................................	25	2	2.00	4	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAT..............................................................................................................	25	2	2.00	4	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0
......................................................ATCAGCGTAGGAGAAGAATTCAAA..............................................................................................................	24	2	2.00	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
...................................TGTAGGGTTTAACATTTTTATCAGC................................................................................................................................	25	3	1.67	5	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0
..................................................................................................................................................................TTAATAGAGTATTTGGAGCAATTA-.	24	3	1.67	5	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTC.................................................................................................................	23	2	1.50	3	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0
....TCCATTTCATCAAGTCCAAAAAGT................................................................................................................................................................	24	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................AGGGTTTAACATTTTTATCAGCGTAGGAGA........................................................................................................................	30	3	1.33	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TTTTAATAGAGTATTTGGAGCAAT....	24	3	1.33	4	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAGCGT..............................................................................................................................	28	3	1.33	4	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0
.........TTCATCAAGTCCAAA....................................................................................................................................................................	15	3	1.33	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.......................................GGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	24	3	1.33	4	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................TTTTTAATAGAGTATTTGGAGCAATTA-.	27	3	1.33	4	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0
....................................GTAGGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	27	3	1.33	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
...................................TGTAGGGTTTAACATTTTTATCAGCG...............................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
...............................................................................................................................................AATTCCAATAGACATTTTTTTAATAGA..................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....TCCATTTCATCAAGTCCAAAAAGTAGGA............................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTCAAATTT...........................................................................................................	29	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................................................TAGGAGAAGAATTCAAATTT...........................................................................................................	20	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................TTTA--TGTCCATACAGAAAAGTTTAA...........................................	25	4	1.00	4	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0
...............................................................................TTC---CCCTTTAATGAAGCACACGCGTATT..............................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGTTTAATTCCAAT....................................	15	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................TTTTA--TGTCCATACAGAA...................................................	18	4	1.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAGCG...............................................................................................................................	27	3	1.00	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
........TTTCATCAAGTCCAAAAAGTAGGACCT.........................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATAGAGTATTTGGAGCAAT....	19	3	1.00	3	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................TAGACATTTTTTTAATAGAGTATTTGG..........	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGAGCA......	19	3	1.00	3	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAG......................................................................................................................	17	3	1.00	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
.................................................................................................................................................TTCCAATAGACATTTTTTTAATAGAGTA...............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGAGCAATTA-A	24	3	1.00	3	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0
.......................................................TCAGCGTAGGAGAAGAATTCAAATTTC---.......................................................................................................	27	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...................................................TTTATCAGCGTAGGAGAAGAATTCAAATT............................................................................................................	29	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTCAAA..............................................................................................................	28	2	1.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TAACATTTTTATCAGCGTAGGAGAAGA.....................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................TTAATTCCAATAGACA...............................	16	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.................GTCCAAAAAGTAGGACCTTGTAGGGTT................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TAATTCCAATAGACATTTTTTTAATAGAG.................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................TTTTTTAATAGAGTATTTGGAGCAA.....	25	3	1.00	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
.............................................................................................TGAAGCACACGCGTATTC.............................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................C---CCCTTTAATGAAGCACACGCGTA................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAATAGACA...............................	30	3	1.00	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TTTAATAGAGTATTTGGAGCAATTA-.	25	3	1.00	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAA....................................................................................................................	19	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0
......................................................................................................................................................................TAGAGTATTTGGAGC.......	15	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................TTTTATCAGCGTAGGAGAA.......................................................................................................................	19	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGTTTAATTCCAATAGACATTTTT..........................	25	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAGAA.......................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................................AAGTTTAATTCCAATAGACATTT............................	23	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TTTAATAGAGTATTTGGAGCAATT...	24	3	0.67	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................TTAATTCCAATAGACATTA............................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................TTTAACATTTTTATCAGCGTAGGAGA........................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAGAGTATTTGGAGCA......	16	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................GAAAAGTTTAATTCCAATAGACA...............................	23	3	0.67	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATT..................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.............................................................................................................TCATAGTCTTTTA--TGTCCATACAGAA...................................................	26	3	0.67	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................TA--TGTCCATACAGAAAAGTTTAATTCCAA.....................................	29	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................ACCTTGTAGGGTTTAACATTTTTATC...................................................................................................................................	26	3	0.67	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TACAGAAAAGTTTAATTCCAATAG..................................	24	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAATAGT.................................	28	3	0.67	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TGTCCATACAGAAAAGTTTAATTCCAA.....................................	27	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTT.......................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................TTTTTTAATAGAGTATTTGGAGCA......	24	3	0.67	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................CAGAAAAGTTTAATTCCAA.....................................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAGCGA..............................................................................................................................	28	3	0.67	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTTTTAATAGAGTATTTGGAGCAA.....	24	3	0.67	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGAGCAA.....	20	3	0.67	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAG.................................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................TTAATAGAGTATTTGGAGCAATT...	23	3	0.67	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
................................................................................................................................................................TTTTAATAGAGTATTTGGAGCAATTA-.	26	3	0.67	2	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGAGCAATT...	22	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAAAAA.................................................................................................................	22	5	0.60	3	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAAC.............................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................TTTTA--TGTCCATACAGAAAAGTTTAAA..........................................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................GAAGAATTCAAATTTC---C......................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................TAACATTTTTATCAGCGTAGGAGAAGAAA...................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAAATTTC---C......................................................................................................	30	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................TTTAACATTTTTATCAGCGTAGGAGAAGAA....................................................................................................................	30	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTCAA...............................................................................................................	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................AGCGTAGGAGAAGAATTCAAAT.............................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TTTATCAGCGTAGGAGAAGAATTCAAA..............................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAGAAA......................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....TCCATTTCATCAAGTCCAAAAAGTA...............................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................ATTCAAATTTC---CCCTTTAATGAAGCA........................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................ATCAGCGTAGGAGAAGAATTCAAAA.............................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................CGTAGGAGAAGAATTCAAATT............................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................TTTTTATCAGCGTAGGAGAAGAATTCAAAT.............................................................................................................	30	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................TAACATTTTTATCAGCGTAGGAGAA.......................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATTCA................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AACATTTTTATCAGCGTAGGAGAA.......................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................TTATCAGCGTAGGAGAAGAATTCAAA..............................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................TTTAACATTTTTATCAGCGTAGGAGAAGA.....................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................TAGGAGAAGAATTCAAATTTC---C......................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAGAAGAAA...................................................................................................................	30	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCT................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................ATCAGCGTAGGAGAAGAATTCAAATTTC---.......................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................TAGGAGAAGAATTCAAAT.............................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................CAGCGTAGGAGAAGAATTCAAATT............................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAT...............................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................CAAATTTC---CCCTTTAATGAAGCACACGC...................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................AGCGTAGGAGAAGAATTCAAATTT...........................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................GTAGGAGAAGAATTCAAATTTC---CCC....................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGAATTCAC...............................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................CATACAGAAAAGTTTAA...........................................	17	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTAA............................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATAGAGTATTTGGAGCA......	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAGA........................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................TAACATTTTTATCAGCGTAGGAA.........................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATCAGCA...............................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................GAGTATTTGGAGCAATT...	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................GGTTTAACATTTTTATCAGCGTAGG...........................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTTTTAATAGAGTATTTGGAGCAAT....	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................GTTTAACATTTTTATCAGCGTAGGAGA........................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................GGGTTTAACATTTTTATCAGCGTAGGAGA........................................................................................................................	29	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAAT....................................	25	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTAGG...........................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTAGGAGA........................................................................................................................	31	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGTTTAATTCCAATAGAC................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................AGAAAAGTTTAATTC........................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................TTTTATCAGCGTAGGAGAAGAATT..................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGAGC.......	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................TATCAGCGTAGGAGAAGA.....................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................GTCTTTTA--TGTCCATACAGAAAAGTT..............................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................TAGAGTATTTGGAGCAATTA-.	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................GAAAAGTTTAATTCCAA.....................................	17	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAGAGTATTTGGAGCAA.....	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................TTAATTCCAATAGACAT..............................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................TTAATAGAGTATTTGGAGCAAT....	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................TTTTTTAATAGAGTATTTGGA.........	21	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCATACAGAAAAGTTTAATTCCAATAGC.................................	28	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GAAAAGTTTAATTCCAATAGACAT..............................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................TAATAGAGTATTTGGA.........	16	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTAGGG..........................................................................................................................	29	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................TACAGAAAAGTTTAATTC........................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................TTA--TGTCCATACAGAAAAGTTTAATTC........................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTGTAGGGTTTAACATTTTTATC...................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TTCATAGTCTTTTA--TGTCCA..........................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................AGGGTTTAACATTTTTATCA..................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................CTTGTAGGGTTTAACATTTTTATCAGCGTA.............................................................................................................................	30	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................TTAACATTTTTATCAGCGTAGGAG.........................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAGAGTATTTGGAGCAATTA-A	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................TTTAATAGAGTATTTGGAGCA......	21	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................AGGGTTTAACATTTTTATCAGCGTAGGAA.........................................................................................................................	29	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................TGTAGGGTTTAACATTTTTATCAGCGTAAA...........................................................................................................................	30	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................TAGGGTTTAACATTTTTATCAGCGTAGGAG.........................................................................................................................	30	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................TTTC---CCCTTTAATGAAGCACACGC...................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TCATAGTCTTTTA--TGTC............................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................TTATCAGCGTAGGAGAAGA.....................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

TTC-----------------------------------------------------------------------------------TTTTTAGATGAGTTCAGATTGCTTCAAAGCTTTTAA--TATCAGTGAAGTGCAGCTTTACTTCACTAGAAATTTTTTTGATGGAGTAATC--T----TGA-A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................GTTCAGATTGCTTCAAAGCTT......................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................TATCAGTGAAGTGCAGCTTTA...........................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................TTTAA--TATCAGTGAAGTGCAGCTTTA...........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTGCTTCAAAGCTTTTAA--TATCAGT.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TTTTTTGATGGAGTAATC--T----TG...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACAGGGT-ATTTATCAAGGCCCGAAAGTACTGCCTTATATGGCTTATTGTTTTTAGAGATATAAGAAAAGAACTCATATTTAAGCATTTTAAGCTTGGCACAGATTAGATCAAACATTTTTG--CGCCATTAAGAAATATCTTAATACCAATGGAAATGGTTTTGAAGCAATAAT-----CAGTTATA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................TAAGCATTTTAAGCTTGGCACAGAT...................................................................................	25	5	0.60	3	0	0	0	0	0	0	3
.......................................................................................................................................................TGGAAATGGTTTTGAAGCAATAAT-----CAGT....	28	3	0.33	1	1	0	0	0	0	0	0

droEug1

GGGT---AGTTTGTCAAGACCAGAAAGTACCGCCTTGTAAGGTTTGATATTTTTGCAATCGTACGAATAGAATTTGCATTTGAGATCACGCAGCTGAGTGCAAATTTTATTGTAGTTTTCTT--CACCTGTGGTAAATATTTTGATACCAATAGATATGGTTTTGATATAGTAGT-----CACTTA-T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATTTGGTAGTTTGTCAAGACCAGAGAGTACCGCCTTGTAAGGTTTGGTCTTTTTGCAATCGTACGAAGAGAATTCGCATTTGAGATCACGCAGCTGAGTGCAAATTTTATTGTAGTTTTCTT--CACCTGTGGTGAATATTTTAATACCAATAGATATGGTTTTGATTTAGTAGT-----CACTTA-T	Size	Hit Count	Total Norm	Total
No Reads

droBip1

GGAT-GGTCACTATCAAGATCCATAAGAATAGCTTTATACGGTTTTTCATTTTAAATTGCATAGGAAAAGAATTCATATTT-----------------TGCAGGCTTTCATGTAGTCACTCATCGCTCATCACAGTAAAGTTTGATTCCAAGCGGAATTTTTTTAATTGAATAGT--GTTCCATAA-A	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGGATCCTCCTTATCCAAACCCGATAGCAATGCTTTATAGGGCTTATATTTTTTATCGGCAAAAGAGAAATATTGAAATTTG---CCCTTCATCATGTTACAAGCGGCTTCATAGTCTGTAA--AGTCCACACAGTGGAACTTAATACCAATTAAAATCTTTTTAATGGAGTATT--GAGTAATTT-A

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GGGATCCTCCTTATCCAAACCCGATAGCAATGCTTTATAGGGCTTATATTTTTTATCGGCAAAAGAGAAATATTGAAATTTG---CCCTTCATCATGTTACAAGCGGCTTCATAGTCTGTAA--AGTCCACACAGTGGAACTTAATACCAATTAAAATCTTTTTAATGGAGTATT--GAGTAATTT-A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

AGGGTCTAATCTATCCAGTCGAAACAGAAGAGCTTTGTAGGGCTTTTCATCTTTGTTGGCGTAGGAAAAAAATGCATGCTTT---CCCTTTAGCATTGTGCAAGCTGCTTCGTAGTCTTTCA--AGTCAGCACAATGAAGTTTAACACCAATTGATATTTTTTTAATCGAATATTTTGTGCAGTTT-A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................CGAAACAGAAGAGCTTTGTAGGGCT................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................AGTCTTTCA--AGTCAGCACAATGAAGT...............................................	26	3	0.33	1	0	1	0	0	0

droMoj3

GGGATCCATTTTATCTAGCCCCAACAGCAGTGCTTTGTATGGCCTGTCATTTTTATCGGCGTAGGAGAAATATTCAAATTTT---CCATGCATTACACTGCACGCGGCTTTATGGTCATTTA--TATCGACGCAGTGGAGCTTGATTCCAATTGAAATCTTTTTGATGGAATATTTAGTGCAATTA-A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................TATTCAAATTTT---CCATGCATTACAC..........................................................................................	25	11	6.64	73	63	0	0	0	10	0
.........TTTATCTAGCCCCAACAGCAGTGCTT.........................................................................................................................................................	26	10	4.20	42	38	0	0	0	4	0
.........TTTATCTAGCCCCAACAGCAGTGCTTTG.......................................................................................................................................................	28	10	1.30	13	13	0	0	0	0	0
......................................................................TATTCAAATTTT---CCATGCATTACACTGC.......................................................................................	28	11	1.27	14	13	0	0	0	1	0
......................................................................TATTCAAATTTT---CCATGCATTACA...........................................................................................	24	11	0.91	10	4	0	0	0	6	0
........................................................................................................................................................TGAAATCTTTTTGATGGAATATTTAG..........	26	12	0.67	8	8	0	0	0	0	0
......................................................................TATTCAAATTTT---CCATGCATTACACT.........................................................................................	26	11	0.64	7	6	0	0	0	1	0
.........TTTATCTAGCCCCAACAGCAGTGC...........................................................................................................................................................	24	10	0.60	6	4	0	0	0	2	0
.......................................................................ATTCAAATTTT---CCATGCATTACAC..........................................................................................	24	11	0.55	6	6	0	0	0	0	0
......................................................................TATTCAAATTTT---CCATGCATTACACTG........................................................................................	27	11	0.55	6	6	0	0	0	0	0
..........TTATCTAGCCCCAACAGCAGTGCTT.........................................................................................................................................................	25	10	0.50	5	5	0	0	0	0	0
.........TTTATCTAGCCCCAACAGCAGTGCT..........................................................................................................................................................	25	10	0.50	5	3	0	0	0	1	1
.............................................................................................................TTATGGTCATTTA--TATCGACGCAGTGG..................................................	27	7	0.43	3	3	0	0	0	0	0
..................................................................................................TGCACGCGGCTTTATGGTCATTTA--TA..............................................................	26	11	0.36	4	4	0	0	0	0	0
....TCCATTTTATCTAGCCCCAACAGCAG..............................................................................................................................................................	26	10	0.30	3	3	0	0	0	0	0
..........TTATCTAGCCCCAACAGCAGTGCTTTG.......................................................................................................................................................	27	10	0.30	3	3	0	0	0	0	0
................................................................................................................TGGTCATTTA--TATCGACGCAGTGGAGC...............................................	27	7	0.29	2	2	0	0	0	0	0
........................................................................................................................TA--TATCGACGCAGTGGAGCTTGA...........................................	23	7	0.29	2	2	0	0	0	0	0
........................................................................................................................TA--TATCGACGCAGTGGAGCTTGAT..........................................	24	7	0.29	2	2	0	0	0	0	0
...................................................................................................................TCATTTA--TATCGACGCAGTGGAGC...............................................	24	7	0.29	2	1	0	0	0	1	0
.............TCTAGCCCCAACAGCAGTGCTTTGTA.....................................................................................................................................................	26	10	0.20	2	2	0	0	0	0	0
.........TTTATCTAGCCCCAACAGCAGTGCTTT........................................................................................................................................................	27	10	0.20	2	1	0	0	0	1	0
..........TTATCTAGCCCCAACAGCAGTGCT..........................................................................................................................................................	24	10	0.20	2	2	0	0	0	0	0
........TTTTATCTAGCCCCAACAGCAGTGC...........................................................................................................................................................	25	10	0.20	2	2	0	0	0	0	0
......................................................................TATTCAAATTTT---CCATGCATTA.............................................................................................	22	11	0.18	2	1	0	0	0	1	0
........................................................................TTCAAATTTT---CCATGCATTACAC..........................................................................................	23	11	0.18	2	1	0	0	0	1	0
......................................ATGGCCTGTCATTTTTATCGG.................................................................................................................................	21	11	0.18	2	2	0	0	0	0	0
.........................................................................................................................................................GAAATCTTTTTGATGGAATATTTAG..........	25	12	0.17	2	2	0	0	0	0	0
.......................................................................................................................TTA--TATCGACGCAGTGGAGCTTGATC.........................................	26	7	0.14	1	0	0	0	0	0	1
........................................................................................................................TA--TATCGACGCAGTGGAGCTTGATTCC.......................................	27	7	0.14	1	1	0	0	0	0	0
......................................................................................................................TTTA--TATCGACGCAGTGGAGCTTGA...........................................	25	7	0.14	1	1	0	0	0	0	0
...................................................................................................................TCATTTA--TATCGACGCAGTGGAGCTTG............................................	27	7	0.14	1	1	0	0	0	0	0
............................................................................................................TTTATGGTCATTTA--TATCGACGCAG.....................................................	25	7	0.14	1	1	0	0	0	0	0
...............................................................................................................................CGACGCAGTGGAGCTTGATTCCA......................................	23	7	0.14	1	1	0	0	0	0	0
............................................................................................................TTTATGGTCATTTA--TATCGACGCAGT....................................................	26	7	0.14	1	1	0	0	0	0	0
............................................................................................................TTTATGGTCATTTA--TATCGACGCAGTGG..................................................	28	7	0.14	1	1	0	0	0	0	0
...................................................................................................................TCATTTA--TATCGACGCAGTGGAGCT..............................................	25	7	0.14	1	0	0	0	0	1	0
.............................................................................................................................ATCGACGCAGTGGAGCTTGATTCCAA.....................................	26	7	0.14	1	1	0	0	0	0	0
......................................................................................................................TTTA--TATCGACGCAGTGGAGCTTGAT..........................................	26	7	0.14	1	1	0	0	0	0	0
............................................................................................................................TATCGACGCAGTGGAGCTTGATTCCAA.....................................	27	7	0.14	1	1	0	0	0	0	0
..............................................................................................................TATGGTCATTTA--TATCGACGCAGTGG..................................................	26	7	0.14	1	1	0	0	0	0	0
...................................................................................................................TCATTTA--TATCGACGCAGTGGAGCTT.............................................	26	7	0.14	1	1	0	0	0	0	0
........................................................................................................................TA--TATCGACGCAGTGGAGCTTGATTC........................................	26	7	0.14	1	0	0	0	0	0	1
....TCCATTTTATCTAGCCCCAACAGCAGT.............................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0
........TTTTATCTAGCCCCAACAGCAGTGCTTC........................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
.........TTTATCTAGCCCCAACAGCAGTGCTTTGT......................................................................................................................................................	29	10	0.10	1	1	0	0	0	0	0
..........TTATCTAGCCCCAACAGCAGTGCTTTGT......................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
..........TTATCTAGCCCCAACAGCA...............................................................................................................................................................	19	10	0.10	1	1	0	0	0	0	0
...................CCCAACAGCAGTGCTTTGTATGGCCT...............................................................................................................................................	26	10	0.10	1	1	0	0	0	0	0
......CATTTTATCTAGCCCCAACAGCAGTG............................................................................................................................................................	26	10	0.10	1	1	0	0	0	0	0
.........TTTATCTAGCCCCAACAGCAGTG............................................................................................................................................................	23	10	0.10	1	1	0	0	0	0	0
...........TATCTAGCCCCAACAGCAGTGCTTTG.......................................................................................................................................................	26	10	0.10	1	1	0	0	0	0	0
.....CCATTTTATCTAGCCCCAACAGCAGTGC...........................................................................................................................................................	28	10	0.10	1	1	0	0	0	0	0
.........TTTATCTAGCCCCAACAGCAGTGCTC.........................................................................................................................................................	26	10	0.10	1	0	0	0	0	1	0
..........................................................................CAAATTTT---CCATGCATTACACT.........................................................................................	22	11	0.09	1	0	0	0	0	1	0
.............................................................TAGGAGAAATATTCAAATTTT---CC.....................................................................................................	23	11	0.09	1	0	0	0	0	1	0
.................................................................................T---CCATGCATTACACTGCACGCGGC................................................................................	24	11	0.09	1	1	0	0	0	0	0
...............................................................................TTT---CCATGCATTACACTGCACGCG..................................................................................	24	11	0.09	1	1	0	0	0	0	0
.............................................................TAGGAGAAATATTCAAATTTT---CCATG..................................................................................................	26	11	0.09	1	1	0	0	0	0	0
..............................................................................TTTT---CCATGCATTACACTGC.......................................................................................	20	11	0.09	1	0	0	0	0	1	0
.....................................................................ATATTCAAATTTT---CCATGCATTACACTGC.......................................................................................	29	11	0.09	1	1	0	0	0	0	0
..................................................................................................TGCACGCGGCTTTATGGT........................................................................	18	11	0.09	1	1	0	0	0	0	0
.................................TTTGTATGGCCTGTCATTTTTATCGGC................................................................................................................................	27	11	0.09	1	1	0	0	0	0	0
..............................TGCTTTGTATGGCCTGTCATTTTTATC...................................................................................................................................	27	11	0.09	1	1	0	0	0	0	0
..................................................................................................TGCACGCGGCTTTATGGTCATTTA--T...............................................................	25	11	0.09	1	1	0	0	0	0	0
...........................................................................AAATTTT---CCATGCATTACAC..........................................................................................	20	11	0.09	1	0	0	0	0	1	0
...............................................................................TTT---CCATGCATTACACTGC.......................................................................................	19	11	0.09	1	1	0	0	0	0	0
......................................................................TATTCAAATTTT---CCATGCATTACACC.........................................................................................	26	11	0.09	1	1	0	0	0	0	0
.............................................................................................TACACTGCACGCGGCTTTATGGTCATT....................................................................	27	11	0.09	1	1	0	0	0	0	0
..........................................................................................................GCTTTATGGTCATTTA--TATCGACGCA......................................................	26	11	0.09	1	1	0	0	0	0	0
............................................TGTCATTTTTATCGGCGTAGGAGAA.......................................................................................................................	25	11	0.09	1	1	0	0	0	0	0
.......................................................................ATTCAAATTTT---CCATGCATTACA...........................................................................................	23	11	0.09	1	1	0	0	0	0	0
........................................................................TTCAAATTTT---CCATGCATTACACT.........................................................................................	24	11	0.09	1	1	0	0	0	0	0
..................................TTGTATGGCCTGTCATTTTTATCGGCG...............................................................................................................................	27	11	0.09	1	1	0	0	0	0	0
..............................TGCTTTGTATGGCCTGTCATTTTT......................................................................................................................................	24	11	0.09	1	1	0	0	0	0	0
..................................................................................................TGCACGCGGCTTTATGGTCATC....................................................................	22	11	0.09	1	1	0	0	0	0	0
.........................................................................TCAAATTTT---CCATGCATTACAC..........................................................................................	22	11	0.09	1	1	0	0	0	0	0
.....................................TATGGCCTGTCATTTTTATCGGCGTA.............................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
..................................................................................................TGCACGCGGCTTTATGGTCATTTA--TAA.............................................................	27	11	0.09	1	1	0	0	0	0	0
................................................................................TT---CCATGCATTACACTGCACGCGGCT...............................................................................	26	11	0.09	1	1	0	0	0	0	0
.............................................GTCATTTTTATCGGCGTAGGAGAAA......................................................................................................................	25	11	0.09	1	1	0	0	0	0	0
........................................................................................TGCATTACACTGCACGCGGCTTTATG..........................................................................	26	11	0.09	1	1	0	0	0	0	0
.......................................................................ATTCAAATTTT---CCATGCATTACACTGC.......................................................................................	27	11	0.09	1	1	0	0	0	0	0
.......................................................................ATTCAAATTTT---CCATGCATTACACC.........................................................................................	25	11	0.09	1	1	0	0	0	0	0
...................................................................................................GCACGCGGCTTTATGGTC.......................................................................	18	11	0.09	1	1	0	0	0	0	0
......................................ATGGCCTGTCATTTTTATCGGC................................................................................................................................	22	11	0.09	1	1	0	0	0	0	0
............................................................................AATTTT---CCATGCATTACACTCA.......................................................................................	22	11	0.09	1	1	0	0	0	0	0
.............................................................................ATTTT---CCATGCATTACACTGC.......................................................................................	21	11	0.09	1	1	0	0	0	0	0
......................................................................TATTCAAATTTT---CCATGCATTACAT..........................................................................................	25	11	0.09	1	0	0	0	0	1	0
..............................................................................................................................................TGATTCCAATTGAAATCTTTTTGAT.....................	25	12	0.08	1	0	0	0	0	1	0
........................................................................................................................................................TGAAATCTTTTTGATGGAATATTTAGC.........	27	12	0.08	1	1	0	0	0	0	0
................................................................................................................................................................TTTTGATGGAATATTTAGTGCAATTA-A	27	12	0.08	1	0	0	0	0	0	1
.............................................................................................................TTATGGTCATTTA--TATCGACGCA......................................................	23	12	0.08	1	1	0	0	0	0	0
..................................................................................................................................................................TTGATGGAATATTTAGTGCAATTA-.	24	12	0.08	1	1	0	0	0	0	0
.......................................................................................................................................................TTGAAATCTTTTTGATGGAATATTTAG..........	27	12	0.08	1	1	0	0	0	0	0

dse_282

scaffold_3480:1423-1504 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.3	-17.9	-17.9