ID:

dse_28

 Coordinate:

scaffold_145:8232-8299 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.0 -32.9 -32.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy8_LTRLTRGypsy-
mature
  1. scaffold_440:756-779 -
  2. scaffold_459:2917-2940 -
  3. scaffold_836:4971-4994 -
  4. scaffold_838:3455-3478 -
  5. scaffold_970:4457-4480 -
  6. scaffold_238:12169-12192 -
  7. scaffold_870:6371-6394 -
  8. scaffold_1180:608-631 -
  9. scaffold_1298:2388-2411 -
  10. scaffold_1856:374-397 -
  11. scaffold_2074:3588-3611 -
  12. scaffold_3555:2209-2232 -
  13. scaffold_10313:975-998 -
  14. scaffold_5352:278-301 -
  15. scaffold_6198:1497-1520 -
  16. scaffold_6719:1141-1164 -
  17. scaffold_111:53065-53088 -
  18. scaffold_193:52617-52640 -
  19. scaffold_232:118-141 -
  20. scaffold_378:5321-5344 -
  21. scaffold_705:4050-4073 +
  22. scaffold_1029:3142-3165 +
  23. scaffold_1941:518-541 +
  24. scaffold_1941:4082-4105 +
  25. scaffold_4455:3953-3976 +
  26. scaffold_1697:4190-4213 +
  27. scaffold_2083:3555-3578 +
  28. scaffold_2103:1197-1220 +
  29. scaffold_2517:1897-1920 +
  30. scaffold_3015:1916-1939 +
  31. scaffold_3094:2442-2465 +
  32. scaffold_5206:969-992 +
  33. scaffold_5593:1719-1742 +
  34. scaffold_7894:1322-1345 +
  35. scaffold_10804:911-934 +
  36. scaffold_7:2443640-2443663 +
  37. scaffold_42:38792-38815 +
  38. scaffold_6987:361-384 +
  39. scaffold_201:39633-39656 +
  40. scaffold_9092:935-958 +
  41. scaffold_2493:466-489 -
  42. scaffold_10041:756-779 -
  43. scaffold_6:16236-16259 -
  44. scaffold_12473:714-737 -
  45. dse_28  scaffold_145:8276-8299 -
  46. scaffold_297:300-323 -
star
  1. dse_28  scaffold_145:8233-8255 -
  2. dse_29  scaffold_197:10208-10230 +

Sense Strand Reads

GACCATGAGTTAACGGTACCGCTGTGGACCTTGGACTCCGCTGGCCAAGGGCGAAGAGGTCGAACGGTAACGGTGCGGGCACAAAGAGGACGCACCGTGAACTAATGGGTACCGCTGTTGACCTTGGACCCCAGCGAGTCAAGGGCAAACAGGTCAAACGGTAACGGT
***********************************.............(((....((((((((.(((((((((((((.............))))))))...........)))))...))))))))...))).************************************ 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
 V115
head
 V113
male body
..................................................GCGAAGAGGTCGAACGGTAACGGT.............................................................................................. 24 0 20 48.55 971 863 0 108 0
................TACCGCTGTGGACCTTGGACTCCGC............................................................................................................................... 25 0 2 7.50 15 2 13 0 0
..............................................................................................CCGTGAACTAATGGGTACCGCTG................................................... 23 0 2 4.00 8 3 4 1 0
..............................................................................................CCGTGAACTAATGGGTACCGCT.................................................... 22 0 2 2.50 5 1 4 0 0
..............................................................................................CCGTGAACTAATGGGTACCGCTGT.................................................. 24 0 2 2.00 4 0 4 0 0
..................................................GCGAAGAGGTCGAACGGTAAC................................................................................................. 21 0 20 1.60 32 0 31 0 1
..................................................GCGAAGAGGTCGAACGGTAACGGTGA............................................................................................ 26 1 20 1.30 26 0 26 0 0
.................................................................................................TGAACTAATGGGTACCGCTGTTGACCT............................................ 27 0 2 1.00 2 0 2 0 0
......................TGTGGACCTTGGACTCCGCTGGCCAA........................................................................................................................ 26 0 2 1.00 2 0 2 0 0
................TACCGCTGTGGACCTTGGACTCCGCT.............................................................................................................................. 26 0 2 1.00 2 0 2 0 0
.................ACCGCTGTGGACCTTGGACTCCGC............................................................................................................................... 24 0 2 1.00 2 0 2 0 0
.................ACCGCTGTGGACCTTGGACTCCGCTGG............................................................................................................................ 27 0 2 1.00 2 0 2 0 0
.................................................................................................TGAACTAATGGGTACCGCTGTTGA............................................... 24 0 2 1.00 2 1 1 0 0
...................................................CGAAGAGGTCGAACGGTAACGGTGC............................................................................................ 25 0 20 0.80 16 0 16 0 0
...................................................................TAACGGTGCGGGCACAAAGAGGACGC........................................................................... 26 0 20 0.80 16 16 0 0 0
.................................................................................................TGAACTAATGGGTACCGCTGTTG................................................ 23 0 2 0.50 1 0 1 0 0
..............................................................................................CCGTGAACTAATGAGTACCGCTG................................................... 23 1 2 0.50 1 0 1 0 0
.................ACCGCTGTGGACCTTGGACTCCGCTG............................................................................................................................. 26 0 2 0.50 1 0 1 0 0
.....TGAGTTAACGGTACCGCTGTGGA............................................................................................................................................ 23 0 2 0.50 1 0 1 0 0
...........................................................................................................................TTGGACCCCAGCGAGTCAAGGGCAAAC.................. 27 0 2 0.50 1 0 1 0 0
...........................................................................................................................TTGGACCCCAGCGAGTCAAGGGCAAACA................. 28 0 2 0.50 1 0 1 0 0
.................ACCGCTGTGGACCTTGGACTGCGCTG............................................................................................................................. 26 1 2 0.50 1 0 1 0 0
.................................................................................................TGAACTAATGGGTACCGCTGTTGACC............................................. 26 0 2 0.50 1 0 1 0 0
.................ACCGTTGTGGACCTTGGACTCCGCTG............................................................................................................................. 26 1 2 0.50 1 1 0 0 0
.......................................................................................................AATGCGTACCGATGTTGAC.............................................. 19 2 2 0.50 1 0 1 0 0
............................................................................................CACCGTGAACTAATGGGTACCGCT.................................................... 24 0 2 0.50 1 0 1 0 0
.....TGAGTTAACGGTACCGCTGTGGC............................................................................................................................................ 23 1 2 0.50 1 1 0 0 0
..............................................................................................TCGTGAACTAATGGGTACCGCTGT.................................................. 24 1 2 0.50 1 0 1 0 0
..............................................................................................CCGTGAACTAATGGGTACCGCTGTTG................................................ 26 0 2 0.50 1 0 1 0 0
..............................................................................................CCGTGAACTAATGGGTACCGCTGA.................................................. 24 1 2 0.50 1 0 1 0 0
............................................................................................................................TGGACCCCAGCGAGTCAAGGGCAAACA................. 27 0 2 0.50 1 0 1 0 0
................................................................................................GTGAACTAATGGGTACCGCTGTTGA............................................... 25 0 2 0.50 1 1 0 0 0
.....TGAGTTAACGGTACCGCTGTG.............................................................................................................................................. 21 0 2 0.50 1 1 0 0 0
.............................................................................................ACCGTGAACTAATGGGTACCGCTG................................................... 24 0 2 0.50 1 0 1 0 0
..................CCGCTGTGGACCTTGGACTCCGCTG............................................................................................................................. 25 0 2 0.50 1 0 1 0 0
..............................................................................................CCGTGAACTAATGGGTACCGC..................................................... 21 0 2 0.50 1 0 1 0 0
.................................................................................................................................CCCAGCGAGTCAAGGGCAAACAGGTCA............ 27 0 2 0.50 1 0 1 0 0
....................................................GAAGAGGTCGAACGGTAACGG............................................................................................... 21 0 20 0.50 10 0 10 0 0
.....TGAGTTGACGGTACCGCTGTGGA............................................................................................................................................ 23 1 2 0.50 1 1 0 0 0
..................................................GCGAAGAGGACGAACGGTAACGG............................................................................................... 23 1 20 0.35 7 0 7 0 0
.................AGCGCTGTGGACCTTGGACTCCG................................................................................................................................ 23 1 3 0.33 1 0 1 0 0
...........................................................TCGAACGGTAACGGTGCGGGCA....................................................................................... 22 0 20 0.30 6 0 6 0 0
..................................................GCGAAGCGGTCGAACGGTAACGGTG............................................................................................. 25 1 20 0.30 6 0 6 0 0
........................TGGACCTTGGACTCCGCTGGCCAAGG...................................................................................................................... 26 0 20 0.30 6 0 6 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGTC............................................................................................. 25 1 20 0.25 5 0 4 1 0
............................................................................................................................TGGACCCCAGCGAGTCAAGGGCAATCT................. 27 2 4 0.25 1 0 0 1 0
..........TAACGGTACCGCTGTGGACCTTGGA..................................................................................................................................... 25 0 20 0.25 5 0 5 0 0
..................................................GCGCAGAGGTCGAACGGTAACGGT.............................................................................................. 24 1 20 0.25 5 0 5 0 0
...........................................................TCGAACGGTAACGGTGAGGGC........................................................................................ 21 1 20 0.20 4 4 0 0 0
..................................................GCGAAGAGGTCGAACGGTAACGT............................................................................................... 23 1 20 0.20 4 0 4 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGTGT............................................................................................ 26 1 20 0.20 4 4 0 0 0
....................................TCCGCTGGCCAAGGGCGAAGAGGT............................................................................................................ 24 0 20 0.20 4 0 4 0 0
..................................................GCGAAGAGGGCGAACGGTAACGGTG............................................................................................. 25 1 20 0.20 4 0 4 0 0
.................................................................................CGAAGAGGACGCACCGTGAACTAAT.............................................................. 25 1 5 0.20 1 0 1 0 0
..............GGTACCGCTGTGGACCTTGGACTC.................................................................................................................................. 24 0 6 0.17 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTGACGGTG............................................................................................. 25 1 20 0.15 3 3 0 0 0
..................................................GCGAAGAGGTTGAACGGTAACGG............................................................................................... 23 1 20 0.15 3 3 0 0 0
..................................................GCGAAGAGGTCAAACGGTAACGGTG............................................................................................. 25 1 20 0.15 3 0 3 0 0
..................................................GCGAAGAGGTTGAACGGTAACGGTG............................................................................................. 25 1 20 0.15 3 3 0 0 0
....................................................................AACGGTGCGGGCACAAAGAGGACGCAC......................................................................... 27 0 20 0.15 3 3 0 0 0
..................................................GCGAAGAGGTCGAACGGTAACGTT.............................................................................................. 24 1 20 0.15 3 0 3 0 0
...............................TGGACTCCGCTGGCCAAGGGCGAAGA............................................................................................................... 26 0 20 0.15 3 0 3 0 0
..........................................GGCCAAGGGCGAAGAGGTCGAACGG..................................................................................................... 25 0 20 0.15 3 0 3 0 0
....................................................................AACGGTGCGGGCACAAAGAGGACGC........................................................................... 25 0 20 0.15 3 2 0 1 0
..................................................GCGAAGAGGTCTAACGGTAACGGTG............................................................................................. 25 1 20 0.15 3 0 3 0 0
..................................................GCGAAGAGGTCGGACGGTAACGGTG............................................................................................. 25 1 20 0.15 3 0 3 0 0
..................................................GCGAAGAGGTCGAACGGTAACTGTGC............................................................................................ 26 1 20 0.10 2 1 1 0 0
...................................................CGAAGAGGTCGAACGGTAACGGTGTT........................................................................................... 26 2 20 0.10 2 0 2 0 0
..................................................GCGAAGAGGTCGAACGGTACCGGTG............................................................................................. 25 1 20 0.10 2 2 0 0 0
....................................................GAAGAGGTCGAACGGTAACGGTGC............................................................................................ 24 0 20 0.10 2 0 1 0 1
...........................................................TCGAACGGTAACGGTGCGGGCACAAA................................................................................... 26 0 20 0.10 2 0 2 0 0
..................................................CCGAAGAGGTCGAACGGTAACGGT.............................................................................................. 24 1 20 0.10 2 1 1 0 0
.....TGAATTAACGGTACCGCTGTGGA............................................................................................................................................ 23 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGTACGGTAACGGTGT............................................................................................ 26 2 20 0.05 1 1 0 0 0
.........................................................................................................................CCTTGGACCCCAGCGAGTCAAGGGC...................... 25 0 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACGGTAGCGGTG............................................................................................. 25 1 20 0.05 1 0 1 0 0
.............................................................................GGCACAAAGAGGACGCACCGTGAAC.................................................................. 25 0 20 0.05 1 0 0 1 0
..................................................GCGAAGCGCTCGAACGGTAACGGTGC............................................................................................ 26 2 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCAAACGGTAACGGT.............................................................................................. 24 1 20 0.05 1 0 0 1 0
..................................................GCGAAGAGGTCGAACGGCAACGG............................................................................................... 23 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGCCGAACGGTAACGGTGA............................................................................................ 26 2 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGTGCAC.......................................................................................... 28 2 20 0.05 1 0 1 0 0
..............................TTGGACTCCGCTGGCCAATA...................................................................................................................... 20 2 20 0.05 1 0 1 0 0
..................................................GCTAAGAGTTCGAACGGTAACGGTG............................................................................................. 25 2 20 0.05 1 0 1 0 0
.........................................TGGCCAAGGGCGAAGAGGTCGAACGC..................................................................................................... 26 1 20 0.05 1 0 1 0 0
..................................ACTCCGCTGGCCAAGGGCGAAG................................................................................................................ 22 0 20 0.05 1 0 1 0 0
..................................................GCGAAGGGGTCGAACGGTAACG................................................................................................ 22 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACCGTAACGGTG............................................................................................. 25 1 20 0.05 1 1 0 0 0
...........................................................................AGGGCACAAAGAGGACGCACC........................................................................ 21 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTAACAGTGC............................................................................................ 26 1 20 0.05 1 0 1 0 0
.....TGAGCTAACGGTACCGCTGGGGA............................................................................................................................................ 23 2 20 0.05 1 0 1 0 0
.........................................................................TGCGGGCACAAAGAGGACGCAC......................................................................... 22 0 20 0.05 1 0 1 0 0
........................................................AGGTCGAACGGTAACGGTTCGGGC........................................................................................ 24 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGTGAG........................................................................................... 27 1 20 0.05 1 0 0 1 0
............................................................................GGGCACAAAGAGGACGCA.......................................................................... 18 0 20 0.05 1 0 1 0 0
...................................................CGAAGAGGTCGAACGGTAACGGTCCC........................................................................................... 26 2 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGACGAACGGTAACGGTGC............................................................................................ 26 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGACGAACGGTAACGGTGCGCC......................................................................................... 29 3 20 0.05 1 0 0 0 1
..................................................GCGAAGAGGTCGAATGGTAACGGT.............................................................................................. 24 1 20 0.05 1 0 1 0 0
................................................GGGCGAAGAGGTCGAACGGTAACG................................................................................................ 24 0 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTACGG................................................................................................ 22 2 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTATCGGT.............................................................................................. 24 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGGAACGGT.............................................................................................. 24 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGGCGAACGGTAACGGTGC............................................................................................ 26 1 20 0.05 1 0 1 0 0
..................................................GCGAAGCGGTCGAACGGTAACGGG.............................................................................................. 24 2 20 0.05 1 0 1 0 0
...................................................CGAAGTGGTCGAACGGTAACGGTG............................................................................................. 24 1 20 0.05 1 0 1 0 0
..........................................................................................................................CTTGGACCCCAGCGAGTCAAGGGA...................... 24 1 20 0.05 1 1 0 0 0
...........................................................................AGGGCACAAAGAGGACGCACCGTG..................................................................... 24 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGCTCGAACGGTAACGGT.............................................................................................. 24 1 20 0.05 1 1 0 0 0
................................................TTGCGAAGAGGTCGAACGGTAACGGTG............................................................................................. 27 2 20 0.05 1 0 1 0 0
...........................................................................................................................TTGGACCCCAGCGAGTCAAGGGCAA.................... 25 0 20 0.05 1 0 1 0 0
..........................................................................................................................CTTGGACCCCAGCGAGTCAAGGG....................... 23 0 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGGACGGTAACGGT.............................................................................................. 24 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACGTTAACGGT.............................................................................................. 24 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGACCGGTAACGG............................................................................................... 23 1 20 0.05 1 1 0 0 0
.........................................................................TGCGGGCACAAAGAGGACGCACC........................................................................ 23 0 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGTTAACGGTG............................................................................................. 25 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCAAGCGGTAACGGTG............................................................................................. 25 2 20 0.05 1 0 1 0 0
...........................................................TCGAACGGTACCGGTGCGGG......................................................................................... 20 1 20 0.05 1 0 1 0 0
.........................................GGGCCAAGGGCGAAGAGGTCGAACGG..................................................................................................... 26 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGCA............................................................................................. 25 2 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCAAACGGTAACG................................................................................................ 22 1 20 0.05 1 0 1 0 0
..............................................................................................................................GACCCCAGCGAGTCAAGGGAGA.................... 22 2 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTAACGTTTC............................................................................................ 26 2 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAGCGGTAACGGTG............................................................................................. 25 1 20 0.05 1 0 0 0 1
..................................................GCGAAGAGGTCTAACGGTAACGGTGCG........................................................................................... 27 1 20 0.05 1 0 1 0 0
..................................................GGGAAGAGGTCGAACGGTAACGGTG............................................................................................. 25 1 20 0.05 1 0 1 0 0
...........................................................................................................................TTGGACCCCAGCGAGACAAGGGC...................... 23 1 20 0.05 1 1 0 0 0
...................................................CGAAGAGGTCGAACGGTAACGG............................................................................................... 22 0 20 0.05 1 1 0 0 0
...............................TGGACTCCGCTGGTCAAGGGCGAAGA............................................................................................................... 26 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAAGTCGAACGGTAACGGT.............................................................................................. 24 1 20 0.05 1 0 1 0 0
..................................................GCCAAGAGGTCGAACGGTAACGGTGC............................................................................................ 26 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAAGTCGAACGGTAACGGTG............................................................................................. 25 1 20 0.05 1 1 0 0 0
..................................................GCGATGAGGTCGAACGGTAACGGT.............................................................................................. 24 1 20 0.05 1 0 1 0 0
...............................TGGACTCCGCTGGCCAAGGGGGAAGA............................................................................................................... 26 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGTCCC........................................................................................... 27 2 20 0.05 1 0 0 1 0
...................................................GCAAGAGGTCGAACGGTAACGG............................................................................................... 22 2 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACGGTAACGGTGCT........................................................................................... 27 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGCCCAACGGTAACGGT.............................................................................................. 24 2 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGGACGGTAACG................................................................................................ 22 1 20 0.05 1 0 1 0 0
..............................TTGGACTCCGCTGGCCAAGGGCGAAG................................................................................................................ 26 0 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTAGAACGGTAACGGT.............................................................................................. 24 1 20 0.05 1 1 0 0 0
.................................................CGCGAAGAGGTCGAACGGTAACGGT.............................................................................................. 25 1 20 0.05 1 0 0 1 0
...............................TGGACTCCGCTGGCCAAGGGCGAAGAGC............................................................................................................. 28 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGGCGAACGGTAACG................................................................................................ 22 1 20 0.05 1 0 1 0 0
...................................................GCAAGAGGTCGAACGGTAACGGT.............................................................................................. 23 2 20 0.05 1 1 0 0 0
.................................................TGCGAAGAGGTCGAACGGTAACGGTGCG........................................................................................... 28 1 20 0.05 1 0 1 0 0
...................................................CGAAGAGGCCGAACGGTAACGGT.............................................................................................. 23 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAACGGTCACGG............................................................................................... 23 1 20 0.05 1 1 0 0 0
..................................................GCGAAGACGTCGAACGGTAACGG............................................................................................... 23 1 20 0.05 1 0 1 0 0
............................................CCAAGGGCGAAGAGGTCGAACGG..................................................................................................... 23 0 20 0.05 1 1 0 0 0
..................................................GCGAAGCGGTCGAACGGTAACG................................................................................................ 22 1 20 0.05 1 0 1 0 0
..................................................GCGAAGACGTCGAACGGTAACGGTGA............................................................................................ 26 2 20 0.05 1 0 1 0 0
...................................................................TAACGGTGCGGGCACAAGGAGGACGC........................................................................... 26 1 20 0.05 1 0 0 1 0
..................................................GCGAAGAGGTCGACCGGTACCGGTT............................................................................................. 25 3 20 0.05 1 1 0 0 0
...................................................................TAACGGTGCGGGCACAAAGAGGA.............................................................................. 23 0 20 0.05 1 0 0 1 0
..................................................GCGAAGAGGTAGAACGGTAACGT............................................................................................... 23 2 20 0.05 1 0 1 0 0
...............................TGGACTCCGCTGGCCAAGGGCGAA................................................................................................................. 24 0 20 0.05 1 0 1 0 0
...........................................GCCAAGGGCGAAGAGGTCGAACGG..................................................................................................... 24 0 20 0.05 1 0 1 0 0
..................................................GCCAAGAGGTCGAACGGTAACGGTG............................................................................................. 25 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACTGTAACGGTG............................................................................................. 25 1 20 0.05 1 0 1 0 0
.........................................TGGCCAAGGGCGAATAGGTCGAACGG..................................................................................................... 26 1 20 0.05 1 0 1 0 0
..................................................GCGAAGAGGTCGAGCGGTAACGG............................................................................................... 23 1 20 0.05 1 0 1 0 0
..............................................................................GCACAAAGAGGACGCACCGTGAACTAA............................................................... 27 0 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCAAACGGTAACGGG.............................................................................................. 24 2 20 0.05 1 0 1 0 0
..................................................................GTAACGGTGCGGGCACAAAGAG................................................................................ 22 0 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGGACGGTAACGG............................................................................................... 23 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTGGAACGGTAACGGTG............................................................................................. 25 1 20 0.05 1 1 0 0 0
..................................................GCGAAGAGGTCGAACGCTAACGGTG............................................................................................. 25 1 20 0.05 1 0 1 0 0
...................................................................TAACGGTGCGGGCACAAAGAGGACGCAC......................................................................... 28 0 20 0.05 1 0 0 1 0
....................................TCCGCTGGCCAAGGGCGAAGAGGTCGA......................................................................................................... 27 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

CTGGTACTCAATTGCCATGGCGACACCTGGAACCTGAGGCGACCGGTTCCCGCTTCTCCAGCTTGCCATTGCCACGCCCGTGTTTCTCCTGCGTGGCACTTGATTACCCATGGCGACAACTGGAACCTGGGGTCGCTCAGTTCCCGTTTGTCCAGTTTGCCATTGCCA
************************************.............(((....((((((((.(((((((((((((.............))))))))...........)))))...))))))))...))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
 V115
head
 V113
male body
....................................AGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 24 0 20 7.10 142 136 0 5 1
................................................................................TGTTTCTCCTGCGTGGCACTTGAT................................................................ 24 0 20 4.20 84 82 0 2 0
.................................................................................GTTTCTCCTGCGTGGCACTTGAT................................................................ 23 0 20 4.05 81 81 0 0 0
...............................................................................GTGTTTCTCCTGCGTGGCACTTGAT................................................................ 25 0 20 2.45 49 49 0 0 0
.........................................................................................................................................CAGTTCCCGTTTGTCCAGTTTGCCAT..... 26 0 2 2.00 4 4 0 0 0
.................................CTGAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 27 0 20 1.95 39 39 0 0 0
.............................................................................................TGGCACTTGATTACCCATGGCGACAA................................................. 26 0 2 1.00 2 2 0 0 0
..GGTACTCAATTGCCATGGCGACACCT............................................................................................................................................ 26 0 2 1.00 2 2 0 0 0
...................................TAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 25 1 20 0.90 18 18 0 0 0
...................................CAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 25 1 20 0.55 11 11 0 0 0
.....................................TGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 23 1 20 0.55 11 6 4 1 0
....................................................................................................TGATTACCCATGGCGACAACTGGAACCT........................................ 28 0 2 0.50 1 1 0 0 0
.....................................................................................................................................CGCTCAGTTCCCGTTTGTCCAGT............ 23 0 2 0.50 1 1 0 0 0
......................................................................................................CTTATCCATGGCGACACCTGGAACCT........................................ 26 3 2 0.50 1 1 0 0 0
...............................................................................................GCACTTGATTACCCATGGCGACAACT............................................... 26 0 2 0.50 1 1 0 0 0
................................................................................................................................GGGGTCGCTCAGTTCCCGTTCGTCCAGT............ 28 1 2 0.50 1 1 0 0 0
..................................................................................................................TACAACTGGAACCTGGGGTCGCTCAGTT.......................... 28 1 2 0.50 1 1 0 0 0
...............................................................................................................AGCGACAACTGGAACCTGGGGTCGCT............................... 26 1 2 0.50 1 1 0 0 0
................................................................................................................................GGGGTCGCTCAGTTCCCGTTTGTCCAGT............ 28 0 2 0.50 1 1 0 0 0
.............................................................................................TGGCACTTGATTACCCATGGCGACAAAT............................................... 28 1 2 0.50 1 0 1 0 0
.............................................................................................................................CCTGGGGTCGCTCAGTTCCCGTTTT.................. 25 1 2 0.50 1 1 0 0 0
............................................................................................................................................TTCCCGTTTGTCCAGTTTGCCAT..... 23 0 2 0.50 1 1 0 0 0
.................................................................................................................CGACAACTGGAACCTGGGGTCGCT............................... 24 0 2 0.50 1 1 0 0 0
...........................................................................................................................................GTTCCCGTTTGTCCAGTTTGCCAT..... 24 0 2 0.50 1 1 0 0 0
............................................................................................GTGGCACTTGATTACCCATGGCGACAA................................................. 27 0 2 0.50 1 1 0 0 0
.....................................................................................CTCCTGCGTGGCACTTGATTACCCAT......................................................... 26 0 2 0.50 1 0 1 0 0
..................................................................................................................................GGTCGCTCAGTTCCCGTTTGTCCA.............. 24 0 2 0.50 1 1 0 0 0
..............................................................................................................................CTGGGGTCGCTCAGTTCCCGTTTGT................. 25 0 2 0.50 1 1 0 0 0
CTGATACTCAATTGCCATGGCGACAC.............................................................................................................................................. 26 1 2 0.50 1 0 0 1 0
..............................................................................................................................................CCCGTTTGTCCAGTTTGCCATTGCCA 26 0 2 0.50 1 1 0 0 0
.....................................................................................................................AACTGGAACCTGGGGTCGCTCAGT........................... 24 0 2 0.50 1 1 0 0 0
..............................................................................................GGCACTTGATTACCCATGGCGACAACT............................................... 27 0 2 0.50 1 1 0 0 0
..............................................................................................................TGGCGACAACTGCACCTTGG...................................... 20 3 5 0.40 2 0 1 1 0
...............CATGGCGACACCTGGAACCT..................................................................................................................................... 20 0 20 0.35 7 0 4 3 0
.....................................GGCGACCGGTTCCCGCTTCTCC............................................................................................................. 22 0 20 0.35 7 7 0 0 0
.............GCCATGGCGACACCTGGAACCT..................................................................................................................................... 22 0 20 0.30 6 6 0 0 0
...........................................CGGTTCCCGCTTCTCCAGCTTGCCAT................................................................................................... 26 0 20 0.30 6 6 0 0 0
...................................AAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 25 1 20 0.25 5 5 0 0 0
................................................................................TGTTTCTCCTGCGTGGCACTTGA................................................................. 23 0 20 0.25 5 5 0 0 0
.....................................GGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 23 0 20 0.25 5 0 0 5 0
............................................................GCTTGCCATTGCCACGCCCGTGT..................................................................................... 23 0 20 0.25 5 0 3 2 0
....................................GGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 24 1 20 0.20 4 3 1 0 0
..............................................................................CGTGTTTCTCCTGCGTGGCACTTGAT................................................................ 26 0 20 0.20 4 0 4 0 0
....................................................................................TCTCCTGCGTGGCACTTGAT................................................................ 20 0 20 0.20 4 3 1 0 0
............................................................GCTTGCCATTGCCACGCCCGTGTTT................................................................................... 25 0 20 0.20 4 0 2 2 0
..............CCATGGCGACACCTGGAACCT..................................................................................................................................... 21 0 20 0.20 4 3 1 0 0
.............................................................CTTGCCATTGCCACGCCCGTGTTT................................................................................... 24 0 20 0.20 4 4 0 0 0
................ATGGCGACACCTGGAACCT..................................................................................................................................... 19 0 20 0.20 4 4 0 0 0
............................................................GCTTGCCATTGCCACGCCCG........................................................................................ 20 0 20 0.15 3 2 1 0 0
....................................................CTTCTCCAGCTTGCCATTGCCACGC........................................................................................... 25 0 20 0.15 3 2 1 0 0
........................................GACCGGTTCCCGCTTCTCCA............................................................................................................ 20 0 20 0.15 3 3 0 0 0
...............................................................TGCCATTGCCACGCCCGTGTTT................................................................................... 22 0 20 0.15 3 0 3 0 0
.............................................................................CCGTGTTTCTCCTGCGTGGCACTTGAT................................................................ 27 0 20 0.15 3 0 0 3 0
................................................................................TGTTTCTCCTGCGTGGCACTTGATT............................................................... 25 0 20 0.15 3 3 0 0 0
..............................................................................CGTGTTTCTCCTGCGTGGCACTTGA................................................................. 25 0 20 0.10 2 2 0 0 0
.................................................CCGCTTCTCCAGCTTGCCATT.................................................................................................. 21 0 20 0.10 2 0 2 0 0
......................................GCGACCGGTTCCCGCTTCTCC............................................................................................................. 21 0 20 0.10 2 2 0 0 0
.............................................................................CCGTGTTTCTCCTGCGTGGCACTTGA................................................................. 26 0 20 0.10 2 2 0 0 0
..................................................................................TTTCTCCTGCGTGGCACTTGAT................................................................ 22 0 20 0.10 2 0 2 0 0
..................................TTAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 26 1 20 0.10 2 2 0 0 0
............................................................GCTTGCCATTGCCACGCCC......................................................................................... 19 0 20 0.10 2 2 0 0 0
....................................................................................TCTCCTGCGTGGCACTTGATT............................................................... 21 0 20 0.10 2 2 0 0 0
..............................................................................CGTGTTTCTCCTGCGTGGCACTTG.................................................................. 24 0 20 0.10 2 2 0 0 0
..............................................................................CGTGTTTCTCCTGCGTGGCACT.................................................................... 22 0 20 0.10 2 0 2 0 0
..............CCATGGCGACACCTGGAACC...................................................................................................................................... 20 0 20 0.10 2 2 0 0 0
................................................CCCGCTTCTCCAGCTTGCCAT................................................................................................... 21 0 20 0.10 2 2 0 0 0
.......................................................CTCCAGCTTGCCATTGCCACGCCCGT....................................................................................... 26 0 20 0.10 2 2 0 0 0
....................................AGGCGACCGGTTCCCGCTTCTCCAGCT......................................................................................................... 27 0 20 0.10 2 2 0 0 0
.............................................................................CCGTGTTTCTCCTGCGTGGCACTTG.................................................................. 25 0 20 0.10 2 2 0 0 0
............................GGAACCTGAGGCGACCGGTTCCCGCTT................................................................................................................. 27 0 20 0.10 2 2 0 0 0
.............................................GTTCCCGCTTCTCCAGCTTGCCAT................................................................................................... 24 0 20 0.10 2 2 0 0 0
............................................................................................................................ACCTGGGGTCGCTCAGTTCCCGT..................... 23 0 20 0.10 2 2 0 0 0
.............................................................CTTGCCATTGCCACGCCCGTGT..................................................................................... 22 0 20 0.10 2 1 1 0 0
.................................................................................GTTTCTCCTGCGTGGCACTTGA................................................................. 22 0 20 0.10 2 2 0 0 0
...................................TAGGCGACCGGTTCCCGCTTCTC.............................................................................................................. 23 1 20 0.10 2 2 0 0 0
.....................................................TTCTCCAGCTTGCCATTGCCACGC........................................................................................... 24 0 20 0.10 2 2 0 0 0
.........................................................TTTGCTTGCCATTGCCACGCCCGTGT..................................................................................... 26 3 20 0.05 1 1 0 0 0
.................................TTAAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 27 2 20 0.05 1 1 0 0 0
.................................................................................TTTTCTCCTGCGTGGCACTTGAT................................................................ 23 1 20 0.05 1 0 1 0 0
........................................................TCCAGCTTGCCATTGCCACGCCCGT....................................................................................... 25 0 20 0.05 1 0 1 0 0
....................................AGGCGACCGGTTCCCGCTTCCCCA............................................................................................................ 24 1 20 0.05 1 0 1 0 0
..........................................CCGGTTCCCGCTTCTCCAGCTTGCCATT.................................................................................................. 28 0 20 0.05 1 1 0 0 0
.....................................GGCGACCGGTTCCCGCTTCTCCAC........................................................................................................... 24 1 20 0.05 1 0 1 0 0
...........TTGCCATGGCGACACCTGGAACCTG.................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
........................ACCTGGAACCTGAGGCGACCGGTT........................................................................................................................ 24 0 20 0.05 1 0 1 0 0
...................................................................ATTGCCACGCCCGTCTTTCTCCT.............................................................................. 23 1 20 0.05 1 1 0 0 0
....................................AGGCGACCGGTTCCCGCTTCTCGA............................................................................................................ 24 1 20 0.05 1 1 0 0 0
...................................CATGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 25 2 20 0.05 1 1 0 0 0
................ATGGCGACACCTGGAACTT..................................................................................................................................... 19 1 20 0.05 1 0 1 0 0
........................................................TTCAGCTTGCCATTGCCACGCCCGT....................................................................................... 25 1 20 0.05 1 1 0 0 0
....................................CGGCGACCGGTTCCCGCTTCTCC............................................................................................................. 23 1 20 0.05 1 1 0 0 0
.........ATCTGCCATGGCGACACCT............................................................................................................................................ 19 2 20 0.05 1 0 1 0 0
..........................................CCGGTTCCCGCTTCTCCA............................................................................................................ 18 0 20 0.05 1 1 0 0 0
........................................................................CACGCCCGTGTTTCTCCTGC............................................................................ 20 0 20 0.05 1 1 0 0 0
.................TGGCGACACCTGGAACCTG.................................................................................................................................... 19 0 20 0.05 1 0 1 0 0
.............................................................................CCGTGTTTCTCCTGCGTGGCACTT................................................................... 24 0 20 0.05 1 1 0 0 0
.......................................................CTCTAGCTTGCCATTGCCACGCCCGTGT..................................................................................... 28 1 20 0.05 1 1 0 0 0
.................................................CCGCTTCTCCAGCTTGCCATTGCCACG............................................................................................ 27 0 20 0.05 1 1 0 0 0
..............................................................................TACGTTTCTCCTGCGTGGCACTTGAT................................................................ 26 3 20 0.05 1 0 0 1 0
.......................................................CTCCAGCTTGCCATTGCCACGC........................................................................................... 22 0 20 0.05 1 1 0 0 0
....................................AGGCGACCGGTTCCCGATTCTCCA............................................................................................................ 24 1 20 0.05 1 1 0 0 0
.......................CACCTGGAACCTGAGGCGACCGGT......................................................................................................................... 24 0 20 0.05 1 0 1 0 0
.................................................................................GTTTCTCCTGCGTGGCACTTCAT................................................................ 23 1 20 0.05 1 1 0 0 0
....................................CTGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 24 2 20 0.05 1 1 0 0 0
...............................................................TGCCATTGCCACGCCCGTGTT.................................................................................... 21 0 20 0.05 1 0 1 0 0
..........................................................................CGCCCGTGTTTCTCCTGCGTGGCACTT................................................................... 27 0 20 0.05 1 1 0 0 0
...............................................TCCCGCTTCTCCAGCTTGCCAT................................................................................................... 22 0 20 0.05 1 1 0 0 0
.......................................................CTCCAGCTTGCCATTGCCACG............................................................................................ 21 0 20 0.05 1 0 1 0 0
...................................................................ATTGCCACGCCCGTGTTTCTCCT.............................................................................. 23 0 20 0.05 1 1 0 0 0
.........................................................CCAGCTTGCCATTGCCACGCCCGTGTTT................................................................................... 28 0 20 0.05 1 1 0 0 0
......................................GCGACCGGTTCCCGCTTCTCCT............................................................................................................ 22 1 20 0.05 1 1 0 0 0
....................................AGGCGACCGGTTCCCCCTTCTCCA............................................................................................................ 24 1 20 0.05 1 1 0 0 0
......................................GGGACCGGTTCCCGCTTCTCCA............................................................................................................ 22 1 20 0.05 1 1 0 0 0
........................................GACCGGTTCCCGCTTCTCC............................................................................................................. 19 0 20 0.05 1 1 0 0 0
.........................................................CCAGCTTGCCATTGCCACGCCCGTGTT.................................................................................... 27 0 20 0.05 1 1 0 0 0
..............................................................................AGTGTTTCTCCTGCGTGGCACTTGAT................................................................ 26 1 20 0.05 1 0 1 0 0
............................................................................TCCGTGTTTCTCCTGCGTGGCACTTGAT................................................................ 28 1 20 0.05 1 0 0 1 0
.......................................................CTCCAGCTTGCCATTGCCACGCCCGTGT..................................................................................... 28 0 20 0.05 1 1 0 0 0
.......TCAATTGCCATGGCGACACCTGGAACCT..................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
..............................AACCTGAGGCGACCGGTTCCCGCTTCT............................................................................................................... 27 0 20 0.05 1 1 0 0 0
...............CATGGCGACACCTGGAACTT..................................................................................................................................... 20 1 20 0.05 1 0 1 0 0
..............TAATGGCGACACCTGGAACCT..................................................................................................................................... 21 2 20 0.05 1 0 1 0 0
........................................................................CACGCCCGTGTTTCTCCTGCGTGGCAC..................................................................... 27 0 20 0.05 1 1 0 0 0
...........................................................TGCTTGCCATTGCCACGCCCGTGTT.................................................................................... 25 1 20 0.05 1 0 1 0 0
...........................TGGAACCTGAGGCGACCGGTTCCCGCT.................................................................................................................. 27 0 20 0.05 1 1 0 0 0
....................................................CTTCTCCAGCTTGCCATTGCCCCGC........................................................................................... 25 1 20 0.05 1 1 0 0 0
.....................................GGCGACCGGTTCCCGCTTCTC.............................................................................................................. 21 0 20 0.05 1 0 1 0 0
...........TCGCCATGGCGACACCTGGAACCT..................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
................................................................................TGTTTCTCCTGCGTGGCACTTTAT................................................................ 24 1 20 0.05 1 1 0 0 0
.................................TTGAGGCGACCGGTTCCCCCTTCTCCA............................................................................................................ 27 2 20 0.05 1 1 0 0 0
........................ACCTGGAACCTGAGGCGACCG........................................................................................................................... 21 0 20 0.05 1 1 0 0 0
..............................................................TTGCCATTGCCACGCCCGTGT..................................................................................... 21 0 20 0.05 1 0 1 0 0
................................................CCCGCTTCTCCAGCTTGCCATTGCCA.............................................................................................. 26 0 20 0.05 1 1 0 0 0
.......................................CGACCGGTTCCCGCTTCTCC............................................................................................................. 20 0 20 0.05 1 1 0 0 0
...................................................................TTTGCCACGCCCGTGTTTCT................................................................................. 20 1 20 0.05 1 1 0 0 0
........AAATTTTCATGGCGACACCTGGAACCT..................................................................................................................................... 27 3 20 0.05 1 1 0 0 0
........................ACCTGGAACCTGAGGCGAC............................................................................................................................. 19 0 20 0.05 1 0 0 1 0
............................................................GCTTTCCATTGCCACTCCCGTGTT.................................................................................... 24 2 20 0.05 1 1 0 0 0
.................................................................................GTTTCTCCTGCGCGGCACTTGAT................................................................ 23 1 20 0.05 1 1 0 0 0
....................................AGGCGACCGGTTCACGCTTCTCCA............................................................................................................ 24 1 20 0.05 1 1 0 0 0
..............CCATGGCGACACATGGAACCT..................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
..................................................................................TTTCTCCTGCGTGACACTTGAT................................................................ 22 1 20 0.05 1 1 0 0 0
.....................................GGCGACCGGTTCCCGCCTCTCCA............................................................................................................ 23 1 20 0.05 1 1 0 0 0
...............................................................TGCCATTGCCACGCCCGTGT..................................................................................... 20 0 20 0.05 1 0 0 1 0
.........................................................TTGGCTTGCCATTGCCACGCCCGTGT..................................................................................... 26 3 20 0.05 1 1 0 0 0
....................................AGGCGACCGGTTCCCGCTTCGCC............................................................................................................. 23 1 20 0.05 1 1 0 0 0
...................................................................ATTGCCACGCCCGTGTTTCTC................................................................................ 21 0 20 0.05 1 1 0 0 0
......................................................................................TCCTGCGTGGCACTTGAT................................................................ 18 0 20 0.05 1 1 0 0 0
...................................................................TTTGCCACGCCCGTGTTT................................................................................... 18 1 20 0.05 1 0 1 0 0
........CAATTGCCATGGCGACACCTGGAACCT..................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.............................................................CTTGCCATTGCCACGCCCGT....................................................................................... 20 0 20 0.05 1 0 1 0 0
............................................................GCTTGCCATTGCCACTCCCGTGTTT................................................................................... 25 1 20 0.05 1 0 1 0 0
........................................GACCGGTTCCCGCTTCTCCAGCTTGCC..................................................................................................... 27 0 20 0.05 1 1 0 0 0
.................................CTGAGGCGACTGGTTCCCGCTTCTCCA............................................................................................................ 27 1 20 0.05 1 1 0 0 0
.......................................CGACCGGTTCCCGCTTCTCCA............................................................................................................ 21 0 20 0.05 1 0 0 1 0
................................................................................GGTTTCTCCTGCGTGGCACTTGAT................................................................ 24 1 20 0.05 1 1 0 0 0
..........................................................................CGCCCGTGTTTCTCCTGCGTGGCACT.................................................................... 26 0 20 0.05 1 1 0 0 0
...............................ACCTGGGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 29 1 20 0.05 1 1 0 0 0
..............TTATGGCGACACCTGGAACCT..................................................................................................................................... 21 2 20 0.05 1 1 0 0 0
...................................GAGGCGACCGGTTCCCGCTTCTCCA............................................................................................................ 25 0 20 0.05 1 0 0 1 0
................................................................................TGTTTCTCCTGCGTTGCACTTGAT................................................................ 24 1 20 0.05 1 1 0 0 0
.............................................................................CCGTGTTTCTCCTGCGTGGCACT.................................................................... 23 0 20 0.05 1 0 1 0 0
...................................AAGGCGACCGGTTCCCGCTTCTCC............................................................................................................. 24 1 20 0.05 1 1 0 0 0
...........................................................AGCTTGCCATTGCCACGCCCGT....................................................................................... 22 0 20 0.05 1 0 1 0 0
.....................................................................TGCCACGCCCGTGTTTCTCCT.............................................................................. 21 0 20 0.05 1 0 1 0 0
......CTCAATTGCCATGGCGACACCTGGAACCT..................................................................................................................................... 29 0 20 0.05 1 1 0 0 0
...........................................................TGCTTGCCATTGCCACGCCCGT....................................................................................... 22 1 20 0.05 1 1 0 0 0
............TGCCATGGCGACACCTGGAACCTG.................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
.................................CTGAGTCGACCGGTTCCCGCTTCTCCA............................................................................................................ 27 1 20 0.05 1 1 0 0 0
............................................................GCTTGCCTTTGCCACGCCCGTGTTT................................................................................... 25 1 20 0.05 1 1 0 0 0
.................................................................................GTTTCTCCTGCGTGGCACTTGATT............................................................... 24 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_145:8182-8349 - dse_28 GACCATG---------AGTTAACGGTACCGCTGTGGACCTTGGACTCC-GC----------TGGCCAAGGGCGAAGAGGTCGAA---CGGTAACGGTGCG-----------------------------------------GGCACAAAGAGGACGCACCGTGAACTAATGGGTACCG-CTGTTGACCTTGGACCCC---AGC----GAGTCA-----AGGGC---AAACAGGT-CAAACGGTAACGGT
droSim2 2r:2000991-2001157 + GACCGTG---------AGTTAACGGTACCGCGGTGGACCTTGGACTCC-GC----------TGGCCAAGGGCGAAGAGGTCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAAGAGGACGCACCGTGAACTAACTG-TACCG-CTGTGTACCTTGGACCCC---AGC----GAGTCA-----AGGGC---AGACAGGT-CAAACGGTAACGGT
dm3 chr3LHet:1406221-1406388 - GACCGTG---------AATTAACGGTACCGCACTGAACCTTGGACTCTAGC----------GGGCCAAAGGCGAAGGGGTCGAA---CGGTAACGGTGCG-----------------------------------------TGCACAAAGAAGACGCACCGTGAACTAACGG-TATCG-CTCTGGACCTTGGACTCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-CAAACGGTAACGGT
droEre2 scaffold_4197:2527-2695 + GACCGTG---------AAATAACGGTACCGCACTGGACCTTGGACTCAAGC----------CGGCCAAGGGAACAGAGGTCAAA---CGGTAACGGTGC-------------------------------------GGACAAGCACAAAGAGGACGCACCGTGAACTAACGG-GACCTGGGTTGGATCTTGTACCCA---AGC----GGGCCG-----TGCGC---AAAAGGGGGAAA----TAACGG-
droYak3 v2_chrUn_002:41980-42153 + GACCGTG---------AGTTAACGGTACCGCGCTGGACCTTGGACTCAAGC----------CAGCCAAGGGCACAAAGGTCGAA---CGGTAACGGTGC------------------------------GGACTTTGGACAGGCACAAAGAGGACGCACCGTGAACTAACGG-GACAT-GTTTGGACCTTGTACCCG---AGC----GAGCCG-----TGTGC---AAAAAGGG-AAA----TAACGG-
droBia1 scf7180000300117:14647-14850 + TGCCGTGTGCAAAAAGGAGTAACGGGACGCCGCTGGACTTTGGACGCG-GCAGTGAACTTTGGACTGAGAAGGAAGGTGCCACATCTCGGCAGCGGTGCGGCACACAAACATGCCACATGCGTCTCCGTGATCAGCGGAACG--------------------------GCAG-CATCA-GGATGGACGGGGGCGGCAAGCAGT----GCGTCA-----AGGAC---AAGAGGGT-CAAACAGGAAC---
droTak1 scf7180000416004:11642-11814 - GACCGTG---------AAGTAACGGTACCGCGCTGGACCTTGGACCCACGC----------CGCCAAAGGGCAATGAGGTCGAA---CGGTGAATCCGT------------------------------GGACTTCGGACCGGCACAAAGAGGATGCACCGTGAACTAACGG-GACAT--TTTGGACATTGGACCCT---AGC----GAGCCG-----TGTGC---AAAAAGGG-AAA----TAACGG-
droEle1 scf7180000490733:95172-95351 + CACCGTG---------AATTAACGGTACCGCGATGGACATTGGACCCTCAC----------ACGGCAAGGGCATTAGGGTCGAA---TT-------GGC------------------------------GGAC-TCGGACCCGCACAAAGAGGACGCACCGTGAACTAACGG-TGCGG-CAGTGGACCTTGGACCCG---ATCACGCGAGCTGGCGCAAGCGCAGCACACAGGGGAAG----TAATAGT
droRho1 scf7180000777116:1062-1240 - CACCGTG---------AATGAACGGTACCTCGATGGACCTTGGACCCGCGC----------CCGGCAAGGGCAACGAGGTCATA---CGGTAAATTGAC------------------------------GGACTTCGGACCCGCCTAAAGAGGACACACCGTGAATTAACGG-TACCT-CGATGAACCTTGGACCCG---CGC----CCGGCA-----AGGCC---AACGAGGT-CATACGGTAAATTG
droFic1 scf7180000451752:38456-38613 + GACCGTG---------AAATAACGGTACCTCTGCGGACCCTGGACCCG------------------------------TTATAA---CGGTGAA-----------------------------------GAACTTCGGAGCCGCACAAAGACGAGAGACCGTGAACTAACGG-AACCT--TTTGTATTTTGGAAACG---ATCACGAGATCGGTCTGAAAGAAAGTTACGAGAC--------CAAGTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GACCATG---------AGTTAACGGTACCGCTGTGGACCTTGGACTCC-GC----------TGGCCAAGGGCGAAGAGGTCGAA---CGGTAACGGTGCG-----------------------------------------GGCACAAAGAGGACGCACCGTGAACTAATGGGTACCG-CTGTTGACCTTGGACCCC---AGC----GAGTCA-----AGGGC---AAACAGGT-CAAACGGTAACGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................GCGAAGAGGTCGAA---CGGTAACGGT........................................................................................................................................................242048.5597100863108
.........................TACCGCTGTGGACCTTGGACTCC-GC----------............................................................................................................................................................................................2527.501513020
..............................................................................................................................................................CCGTGAACTAATGGGTACCG-CTG...................................................................2324.0084031
..............................................................................................................................................................CCGTGAACTAATGGGTACCG-CT....................................................................2222.5054010
..............................................................................................................................................................CCGTGAACTAATGGGTACCG-CTGT..................................................................2422.0044000
......................................................................GCGAAGAGGTCGAA---CGGTAAC...........................................................................................................................................................21201.603231100
......................................................................GCGAAGAGGTCGAA---CGGTAACGGTGA......................................................................................................................................................26201.302626000
.................................................................................................................................................................TGAACTAATGGGTACCG-CTGTTGACCT............................................................2721.0022000
...............................TGTGGACCTTGGACTCC-GC----------TGGCCAA.....................................................................................................................................................................................2621.0022000
.........................TACCGCTGTGGACCTTGGACTCC-GC----------T...........................................................................................................................................................................................2621.0022000
..........................ACCGCTGTGGACCTTGGACTCC-GC----------............................................................................................................................................................................................2421.0022000
..........................ACCGCTGTGGACCTTGGACTCC-GC----------TGG.........................................................................................................................................................................................2721.0022000
.................................................................................................................................................................TGAACTAATGGGTACCG-CTGTTGA...............................................................2421.0021010
.......................................................................CGAAGAGGTCGAA---CGGTAACGGTGC......................................................................................................................................................25200.801616000
..........................................................................................TAACGGTGCG-----------------------------------------GGCACAAAGAGGACGC............................................................................................26200.801600160
.................................................................................................................................................................TGAACTAATGGGTACCG-CTGTTG................................................................2320.5011000
..........................ACCGCTGTGGACCTTGGACTCC-GC----------TG..........................................................................................................................................................................................2620.5011000
.....TG---------AGTTAACGGTACCGCTGTGGA....................................................................................................................................................................................................................2320.5011000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AAAC...................2720.5011000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AAACA..................2820.5011000
.................................................................................................................................................................TGAACTAATGGGTACCG-CTGTTGACC.............................................................2620.5011000
............................................................................................................................................................CACCGTGAACTAATGGGTACCG-CT....................................................................2420.5011000
.....TG---------AGTTAACGGTACCGCTGTGGC....................................................................................................................................................................................................................2320.5010010
..............................................................................................................................................................CCGTGAACTAATGGGTACCG-CTGTTG................................................................2620.5011000
..............................................................................................................................................................CCGTGAACTAATGGGTACCG-CTGA..................................................................2420.5011000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AAACA..................2720.5011000
................................................................................................................................................................GTGAACTAATGGGTACCG-CTGTTGA...............................................................2520.5010010
.....TG---------AGTTAACGGTACCGCTGTG......................................................................................................................................................................................................................2120.5010010
.............................................................................................................................................................ACCGTGAACTAATGGGTACCG-CTG...................................................................2420.5011000
...........................CCGCTGTGGACCTTGGACTCC-GC----------TG..........................................................................................................................................................................................2520.5011000
..............................................................................................................................................................CCGTGAACTAATGGGTACCG-C.....................................................................2120.5011000
..................................................................................................................................................................................................CCC---AGC----GAGTCA-----AGGGC---AAACAGGT-CA............2720.5011000
........................................................................GAAGAGGTCGAA---CGGTAACGG.........................................................................................................................................................21200.501010000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCA........................................................................................................22200.3066000
.................................TGGACCTTGGACTCC-GC----------TGGCCAAGG...................................................................................................................................................................................26200.3066000
......................................................................GCGAAGAGGTCGAA---CGGTAACGGTC.......................................................................................................................................................25200.2554001
...................TAACGGTACCGCTGTGGACCTTGGA.............................................................................................................................................................................................................25200.2555000
......................................................................GCGAAGAGGTCGAA---CGGTAACGT.........................................................................................................................................................23200.2044000
......................................................................GCGAAGAGGTCGAA---CGGTAACGGTGT......................................................................................................................................................26200.2040040
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGT.........................................................................................................................................................................24200.2044000
.......................GGTACCGCTGTGGACCTTGGACTC..........................................................................................................................................................................................................2460.1711000
...........................................................................................AACGGTGCG-----------------------------------------GGCACAAAGAGGACGCAC..........................................................................................27200.1530030
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................26200.1533000
..............................................................GGCCAAGGGCGAAGAGGTCGAA---CGG...............................................................................................................................................................25200.1533000
...........................................................................................AACGGTGCG-----------------------------------------GGCACAAAGAGGACGC............................................................................................25200.1530021
.......................................................................CGAAGAGGTCGAA---CGGTAACGGTGTT-----------------------------------------............................................................................................................26200.1022000
........................................................................GAAGAGGTCGAA---CGGTAACGGTGC......................................................................................................................................................24200.1021100
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACAAA....................................................................................................26200.1022000
..........................................................................................................................................................................................CCTTGGACCCC---AGC----GAGTCA-----AGGGC---.......................25200.0510010
.............................................................................................................................................GGCACAAAGAGGACGCACCGTGAAC...................................................................................25200.0510001
......................................................................GCGAAGAGGTCGAA---CGGTAACGGTGCA-----------------------------------------C...........................................................................................................28200.0511000
.......................................TTGGACTCC-GC----------TGGCCAATA...................................................................................................................................................................................20200.0511000
.............................................................TGGCCAAGGGCGAAGAGGTCGAA---CGC...............................................................................................................................................................26200.0511000
...........................................ACTCC-GC----------TGGCCAAGGGCGAAG.............................................................................................................................................................................22200.0511000
................................................................................................TGCG-----------------------------------------GGCACAAAGAGGACGCAC..........................................................................................22200.0511000
...................................................................................................G-----------------------------------------GGCACAAAGAGGACGCA...........................................................................................18200.0511000
....................................................................GGGCGAAGAGGTCGAA---CGGTAACG..........................................................................................................................................................24200.0511000
...........................................................................................................................................................................................CTTGGACCCC---AGC----GAGTCA-----AGGGA---.......................24200.0510010
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AA.....................25200.0511000
...........................................................................................................................................................................................CTTGGACCCC---AGC----GAGTCA-----AGGG...........................23200.0510010
................................................................................................TGCG-----------------------------------------GGCACAAAGAGGACGCACC.........................................................................................23200.0511000
......................................................................GCGAAGAGGTCGAA---CGGTAACGGCA.......................................................................................................................................................25200.0511000
.......................................................................CGAAGAGGTCGAA---CGGTAACGG.........................................................................................................................................................22200.0510010
......................................................................GCGAAGAGGTCGAA---CGGTAACGGTGCT-----------------------------------------............................................................................................................27200.0511000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAG.............................................................................................................................................................................26200.0510010
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGAGC..........................................................................................................................................................................28200.0510010
................................................................CCAAGGGCGAAGAGGTCGAA---CGG...............................................................................................................................................................23200.0510010
..........................................................................................TAACGGTGCG-----------------------------------------GGCACAAAGAGGA...............................................................................................23200.0510001
........................................TGGACTCC-GC----------TGGCCAAGGGCGAA..............................................................................................................................................................................24200.0511000
...............................................................GCCAAGGGCGAAGAGGTCGAA---CGG...............................................................................................................................................................24200.0511000
..............................................................................................................................................GCACAAAGAGGACGCACCGTGAACTAA................................................................................27200.0510010
.........................................................................................GTAACGGTGCG-----------------------------------------GGCACAAAGAG.................................................................................................22200.0510010
..........................................................................................TAACGGTGCG-----------------------------------------GGCACAAAGAGGACGCAC..........................................................................................28200.0510001
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTCGA......................................................................................................................................................................27200.0511000
droSim2
GACCGTG---------AGTTAACGGTACCGCGGTGGACCTTGGACTCC-GC----------TGGCCAAGGGCGAAGAGGTCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAAGAGGACGCACCGTGAACTAACTG-TACCG-CTGTGTACCTTGGACCCC---AGC----GAGTCA-----AGGGC---AGACAGGT-CAAACGGTAACGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................274117.504700011800112126767853150000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGC.........................................................................................................21699.3359600210120010781003281577000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................26487.00348000900345166671090120000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTAACGGT23982.56743001110039259640385110000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCAC.......................................................................................................23670.334220031600037461176011510000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................23460.25241000470058627145120000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCA........................................................................................................22653.00318000722011412872015815000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAA..............................................................................................................................................................................25443.7517500430018331235210463000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GG..........................................................................................................20640.67244000426016275784120000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AGA....................26128.002800020021688010000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGA....................25128.0028000100065312010000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGG...........................22927.5624800060030671720108000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGA.....................................................................................................25227.50550004000120390270000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTC........................................................................................................................................................................25427.001080003000000105000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGG...........................21926.3323700011003442517128000000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAG.............................................................................................................................................................................26423.5094004400861014341121000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGA...............................................................................................................................................................................24421.508600220071414750350000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCAT.......................................................................................................23618.3311000020004032706311000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAA..............................................................................................................................................................................24418.00720002004546300210000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGT.........................................................................................................................................................................24417.5070000200010064030000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGAG...........................................................................................................................................................................27417.5070000300455837080000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACT......................................................................................................24616.009600020001501230532000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTAACGG.22915.11136000316033012360000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAG.............................................................................................................................................................................25415.0060000200020547130000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACG......................................................................................................24214.5029000310030350140000
........................................TGGACTCC-GC----------TGGCCAAGGGCGA...............................................................................................................................................................................23414.00560000003319130261000
.............................................................TGGCCAAGGGCGAAGAGGTCGAA---CGG...............................................................................................................................................................26813.8811100030095113227060000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAG...........................................................................................................................................................................22412.00480004100000030022000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCACGA.....................................................................................................2429.501900000082800010000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAA....................................................................................................2529.5019000000101611000000
..CCGTG---------AGTTAACGGTACCGCGG........................................................................................................................................................................................................................2249.5038000100454816000000
..............................................................GGCCAAGGGCGAAGAGG..........................................................................................................................................................................1799.2283000000000083000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGACA..................2719.00900000020322000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGT.....................................................................................................2529.0018000100020010140000
..................................................................................................................................................................................................CCC---AGC----GAGTCA-----AGGG...........................1698.7879000000320074000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2848.7535000700073440100000
.....TG---------AGTTAACGGTACCGCGGTGGAC...................................................................................................................................................................................................................2448.0032000000010000265000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAGAG...........................................................................................................................................................................2848.0032000300910233020000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCAA.......................................................................................................2367.83470000000401450213000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2947.75310004001011410010000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTCGAA---..................................................................................................................................................................2847.5030000000113870010000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTAACG..2197.1164000180012151000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------G...........................................................................................................19207.001400000410000098010000
.....TG---------AGTTAACGGTACCGCGGTGGACCT.................................................................................................................................................................................................................2647.002800010037460061000
........................................TGGACTCC-GC----------TGGCCAAGGGCG................................................................................................................................................................................2246.7527000100114018020000
.................GTTAACGGTACCGCGGTGGACCTTGGA.............................................................................................................................................................................................................2736.3319000000111106000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---.......................2396.2256008500050236000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------............................................................................................................18206.051210000000000121000000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTGTACC.............................................................2716.00600020001003000000
.............................................................TGGCCAAGGGCGAAGAGGTCGAA---C.................................................................................................................................................................2496.00540000000532270170000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACTT.....................................................................................................2566.0036000100010030301000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTG.................................................................2316.00600000002031000000
................................................................................................................................................................................................ACCCC---AGC----GAGTCA-----AGGG...........................1896.0054000100000053000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---A......................2386.0048000000167425050000
...............................................................GCCAAGGGCGAAGAGG..........................................................................................................................................................................1695.7852000000045007000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................2145.7523000200100118010000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---A......................2485.1341000100426721000000
.............................................TCC-GC----------TGGCCAAGGGCGAAG.............................................................................................................................................................................2045.0020000100000019000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGACAGG................2915.00500000020300000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AG.....................2545.0020000000100118000000
.............................................TCC-GC----------TGGCCAAGGGCGAA..............................................................................................................................................................................1945.0020000110001017000000
........................................TGGACTCC-GC----------TGGCCAAGGGC.................................................................................................................................................................................2144.751900000013111093000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGC.........................................................................................................2064.6728000100210510000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGAA...........................................................................................................................................................................2744.5018000000001140102000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGCACC.........................................................................................2124.50900000018000000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAA.............................................................................................................................................................................2544.5018000000000100170000
..CCGTG---------AGTTAACGGTACCGCGGT.......................................................................................................................................................................................................................2344.5018000000431010000000
.................................................................................................................................................................................................CCCC---AGC----GAGTCA-----AGGG...........................1794.4440000000010039000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCT........................................................................................................22124.17500001000203120275000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AGACA..................2814.00400000020200000000
.....TG---------AGTTAACGGTACCGCGGTGGA....................................................................................................................................................................................................................2344.0016000000021010111000
.............................................................TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................1894.0036000000000135000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTA........................................................................................................................................................................2544.001600020010238000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AG.....................2444.0016000000010014010000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTGT................................................................2414.00400000000003010000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTA.....1893.7834000080130220000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGA.........................................................................................................................................................................2443.7515000100111010010000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCG................................................................................................................................................................................2343.7515000100010110011000
.............................................................TGGCCAAGGGCGAAGAGGTCGAA---CG................................................................................................................................................................2583.6329000000145212131000
..........................................................................................TAACGGTGCG-----------------------------------------GGCACGAAGAGGACG.............................................................................................2523.50700000010002040000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAA....................................................................................................2623.50700000001004020000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAAG...................................................................................................2723.50700000012002020000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAAGA..................................................................................................2823.50700000005010010000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAA.............................................................................................................................................................................2643.2513000000000000112000
.................GTTAACGGTACCGCGGTGGACCTTG...............................................................................................................................................................................................................2543.2513000000010012000000
...CGTG---------AGTTAACGGTACCGCGGTGGA....................................................................................................................................................................................................................2543.251300000044202010000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AGACAGG................3013.00300000030000000000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGCAC..........................................................................................2023.00600000006000000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGACAGGT-..............3013.00300000030000000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGAC...................2613.00300000000012000000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTGTACCT............................................................2813.00300101000000010000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGG............................2192.8926000200010122000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGAGGT.........................................................................................................................................................................2942.751100020060200010000
.................GTTAACGGTACCGCGGTGGACC..................................................................................................................................................................................................................2242.751100000007004000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCATT......................................................................................................24122.7533000100000140270000
.....TG---------AGTTAACGGTACCGCGGTGGACC..................................................................................................................................................................................................................2542.751100000002010062000
.................GTTAACGGTACCGCGGTGGACCTTGG..............................................................................................................................................................................................................2642.751100000007004000000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGT...............................................................................................................................................................................2442.751100000001131041000
.......................................TTGGACTCC-GC----------TGGCCAAGGGC.................................................................................................................................................................................2242.751100000008002010000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTAAC...2092.6724000024000000000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGA---.......................2292.672400000056346000000
........................................TGGACTCC-GC----------TGGCCAAG....................................................................................................................................................................................1852.6013000012000001000000
...CGTG---------AGTTAACGGTACCGCGGTGG.....................................................................................................................................................................................................................2442.501000000000441010000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACTTT....................................................................................................2662.5015000000000000141000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTCGA......................................................................................................................................................................2742.501000000003042010000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCACG......................................................................................................2322.50500010020200000000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAAGA..................................................................................................2722.50500000030020000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---.......................2292.4422001200140113000000
..................TTAACGGTACCGCGGTGGACCTTGGAC............................................................................................................................................................................................................2732.33700010001023000000
.....TG---------AGTTAACGGTACCGCGGTGGACT..................................................................................................................................................................................................................2542.25900000000000081000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTT........................................................................................................................................................................2542.25900010000007010000
.................GTTAACGGTACCGCGGTGGA....................................................................................................................................................................................................................2042.25900000018000000000
..CCGTG---------AGTTAACGGTACCGCGGTGGA....................................................................................................................................................................................................................2642.25900030033000000000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GG..........................................................................................................1962.171300000050512000000
.....TG---------AGTTAACGGTACCGCGGTGGAT...................................................................................................................................................................................................................2442.00800000000000044000
.......................................TTGGACTCC-GC----------TGGCC.......................................................................................................................................................................................1652.001000000000019000000
..................................................................................................................................................................................................CCC---AGC----GAGTCA-----AGGGC---AG.....................1942.00800008000000000000
.................GTTAACGGTACCGCGGTGGACCTT................................................................................................................................................................................................................2442.00800000000008000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCAAT......................................................................................................2462.001200000000013071000
........................................TGGACTCC-GC----------TGGCCAAGGGCGT...............................................................................................................................................................................2342.00800000010022030000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGA.........................................................................................................2172.001400000003038000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAT....................................................................................................2622.00400010000000030000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAGT............................................................................................................................................................................2742.00800000000007100000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGC............................................................................................1822.00400000003001000000
.....TG---------AGTTAACGGTACCGCGGTGGATT..................................................................................................................................................................................................................2542.00800000000000044000
...............................................................................TCGAA---CGGTAACGGTGC......................................................................................................................................................17201.95390000000110721000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCATTT.....................................................................................................25131.9225000000000000223000
...................................................................................................................................................................................................................................GACAGGT-CAAACGGTAACGGT21111.9121000000120040140000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTAA....1991.8917000016000010000000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCA........................................................................................................2161.831100000040510010000
..................................................................................................................................................................................................................................AGACAGGT-CAAACGGTAACGGT22111.822000010041206060000
............................................CTCC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................2241.75700000000007000000
.................GTTAACGGTACCGCGGTGGACCT.................................................................................................................................................................................................................2341.75700000003004000000
...CGTG---------AGTTAACGGTACCGCGGTGGACCT.................................................................................................................................................................................................................2841.75700000031003000000
...CGTG---------AGTTAACGGTACCGCGGT.......................................................................................................................................................................................................................2241.75700000010024000000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCAC.......................................................................................................2261.671000000010311040000
.................GTTAACGGTACCGCGGTGGACCTTGGAC............................................................................................................................................................................................................2831.67500000004001000000
..................................................................................................................................................................................................CCC---AGC----GAGTCA-----AGG............................1591.671500000076101000000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACG........15101.6016000000000016000000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGG.......1691.5614000000040010000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGA---.......................2391.561400000023432000000
..............................................................GGCCAAGGGCGAAGAGGT.........................................................................................................................................................................1891.5614000000000014000000
..........................................................................................TAACGGTGCG-----------------------------------------GGCACGAAGAGGAC..............................................................................................2421.50300000000002010000
...........................................ACTCC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2541.50600000000006000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGC.........................................................................................................................................................................2441.50600000000006000000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCACT......................................................................................................2361.50900000010101033000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGCACCGTGA.....................................................................................2521.50300000003000000000
.....TG---------AGTTAACGGTACCGCGGTGGAAT..................................................................................................................................................................................................................2541.50600000000000042000
................................................................................CGAA---CGGTAACGGTGCG-----------------------------------------GGCACGAAG...................................................................................................2621.50300000020000010000
.....TG---------AGTTAACGGTACCGCGGTGGACA..................................................................................................................................................................................................................2541.50600000000000060000
.........................TACCGCGGTGGACCTTGGACTCC-GC----------............................................................................................................................................................................................2521.50300000011100000000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGCACCGTG......................................................................................2421.50300000003000000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGT---.......................2391.4413000100001011000000
..............................................................GGCCAAGGGCGAAGAGGTC........................................................................................................................................................................1991.4413000000000013000000
..............................................................................................................................................GCACGAAGAGGACGCAC..........................................................................................1731.33400000000004000000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGT......1791.3312000000000012000000
..............................................................................................................................................................................................................................C---AGACAGGT-CAAACGGTAACGGA2391.331200000019020000000
..................................................C----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................1991.3312000100000011000000
.............................................................TGGCCAAGGGCGAAGAGGTC........................................................................................................................................................................2091.3312000000000012000000
................................................................CCAAGGGCGAAGAGGT.........................................................................................................................................................................16111.2714000000104000000000
..CCGTG---------AGTTAACGGTACCGCGGTGG.....................................................................................................................................................................................................................2541.25500000013100000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAT..............................................................................................................................................................................2441.25500010000011020000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGT............................................................................................................................................................................2641.25500000000005000000
...............................................C-GC----------TGGCCAAGGGCGAAGAGGTC........................................................................................................................................................................2341.25500000000005000000
.............................................TCC-GC----------TGGCCAAGGGCGA...............................................................................................................................................................................1841.25500000000005000000
........................................TGGACTCC-GC----------TGGCCAAGGG..................................................................................................................................................................................2041.25500010011002000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGA..........................................................................................................................................................................2341.25500020000111000000
..........................................................................AGAGGTCGAA---CGGTAACGGTG.......................................................................................................................................................21121.251500000024102033000
........................................TGGACTCC-GC----------TGGCCAAGGGCGAAGAGT..........................................................................................................................................................................2841.25500010000004000000
.................................................GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2091.2211000000000011000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGT---.......................2291.2211000100000010000000
.............................................TCC-GC----------TGGCCAAGGGCG................................................................................................................................................................................1751.20600000000006000000
.................................TGGACCTTGGACTCC-GC----------TGGCC.......................................................................................................................................................................................2251.20600000031200000000
.................................................................................GAA---CGGTAACGGTGCG-----------------------------------------GGC.........................................................................................................1961.17700000000007000000
.............................................................TGGCCAAGGGCGAAGAGGTCGAA---..................................................................................................................................................................2391.111000000011105020000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCAAC......................................................................................................2461.00600000002004000000
.........................................GGACTCC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................2541.00400010000003000000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGCAA..........................................................................................2021.00200000000000011000
................................................................................................TGCG-----------------------------------------GGCACGAAGAGGACG.............................................................................................1921.00200000001001000000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTGTAAT.............................................................2711.00100000000000010000
..............................................................................................................................................................................................GGACCCC---AGC----GAGTCA-----AGGGC---AGA....................2411.00100000000001000000
..................................................................................................CG-----------------------------------------GGCACGAAGAGGACGCACCGT.......................................................................................2321.00200000000000011000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTGTA...............................................................2511.00100010000000000000
.....TG---------AGTTAACGGTACCGCGGTGGAA...................................................................................................................................................................................................................2441.00400000000000040000
...CGTG---------AGTTAACGGTACCGCGGTG......................................................................................................................................................................................................................2341.00400000000002020000
...............................................................................................................................................................CGTGAACTAACTG-TACCG-CTGTGTT...............................................................2511.00100000000000010000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAGAGGT.........................................................................................................................................................................3041.00400000040000000000
.................................TGGACCTTGGACTCC-GC----------TGGCCAAGGGC.................................................................................................................................................................................2841.00400010002000010000
.................................................................................................................................................................TGAACTAACTG-TACCG-CTGTGTACCT............................................................2611.00100100000000000000
................................................................................................TGCG-----------------------------------------GGCACGAAGAGGACGCT...........................................................................................2121.00200000000001010000
...............................GGTGGACCTTGGACTCC-GC----------TGGCCAA.....................................................................................................................................................................................2621.00200000000110000000
..............................................................GGCCAAGGGCGAAGAGGTCGAA---CGG...............................................................................................................................................................2581.00800000004103000000
........................................TGGACTCC-GC----------TGGCCAAGGGCA................................................................................................................................................................................2241.00400000000101011000
................................................................................................................................................................................................ACCCC---AGC----GAGTCA-----AGGGC---AGACAGG................2611.00100000000010000000
..............................................CC-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................2041.00400000000004000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGAA...................2611.00100000000100000000
.................................................................................................................................................................................................CCCC---AGC----GAGTCA-----AGGGC---AGACAGG................2511.00100000010000000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAA...........................................................................................................................................................................2241.00400010000001020000
.................................................GC----------TGGCCAAGGGCGAAGAG...........................................................................................................................................................................1991.00900000000009000000
...............................................C-GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................1941.00400000000004000000
.................................................................................................................................................................................................CCCC---AGC----GAGTCA-----AGGGC---AGACAGGT-C.............2711.00100000000001000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTC.....................................1791.00900000000009000000
.................................TGGACCTTGGACTCC-GC----------TGGCCA......................................................................................................................................................................................2351.00500000002010002000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCAATT.....................................................................................................2561.00600000000003030000
............................................CTCC-GC----------TGGCCAAGGGCGAAGAGGT.........................................................................................................................................................................2541.00400000000004000000
....................................................................................................................................................................ACTAACTG-TACCG-CTGT..................................................................1711.00100000000001000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGC.....................................................................................................2521.00200000000001010000
............................................CTCC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2441.00400000000004000000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAAGAA...........................................................................................................................................................................2841.00400100001000020000
..............................................CC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2241.00400020000002000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AGGGC---AGAC...................2711.00100000001000000000
.................................................................................................................................................................................................CCCC---AGC----GAGTCA-----AGGGC---AGACAGGT-..............2611.00100000000001000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGGGC---AGACAGT................2911.00100000000100000000
........................................................................GAAGAGGTCGAA---CGGTAACGGTGCG-----------------------------------------............................................................................................................25101.001000000042101020000
.................................................................................................................................................................................................CCCC---AGC----GAGTCA-----AGGGC---AGA....................2111.00100000000001000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACGTT....................................................................................................2621.00200000000001010000
.......................................................................................................................................................................................................................................GGT-CAAACGGTAACGGT17120.9211000000000011000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGT.........................................................................................................21200.9018000000020412000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------GGCACTCT....................................................................................................2660.83500000000000041000
.............................................................TGGCCAAGGGCGAAGAGGTCGAA---CGGT..............................................................................................................................................................2760.83500000012000020000
........................................TGGACTCC-GC----------TGGCCAAGGGGA................................................................................................................................................................................2250.80400000002020000000
.............................................................................................................................................................................................TGGACCCC---AGC----GAGTCA-----AGG............................2090.78700010000006000000
............................................................................................................................................................................................TTGGACCCC---AGC----GAGTCA-----AG.............................2090.78700000000007000000
............................................CTCC-GC----------TGGCCAAGGGCGAAGAG...........................................................................................................................................................................2340.75300000000003000000
...................TAACGGTACCGCGGTGGACCTTGGA.............................................................................................................................................................................................................2540.75300000010011000000
........................................TGGACTCC-GC----------TGGCCAAGGGCGTT..............................................................................................................................................................................2440.75300000000001020000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGAA........................................................................................................................................................................2540.75300000000003000000
.....TG---------AGTTAACGGTACCGCGGTG......................................................................................................................................................................................................................2140.75300000000000030000
...............................................C-GC----------TGGCCAAGGGCGAAGAGGT.........................................................................................................................................................................2240.75300000000003000000
.....TG---------AGTTAACGGTACCGCGGTGG.....................................................................................................................................................................................................................2240.75300000000000003000
.......................................TTGGACTCC-GC----------TGGCCAAGGGCGAG..............................................................................................................................................................................2540.75300100000000020000
.............................................TCC-GC----------TGGCCAAGGGCGAAA.............................................................................................................................................................................2040.75300000000003000000
.................GTTAACGGTACCGCGGTGGAC...................................................................................................................................................................................................................2140.75300000000003000000
...............................................C-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2140.75300000000002010000
...............................................................................TCGAA---CGGTAACGGTG.......................................................................................................................................................16200.7515000000200112000000
.............................................TCC-GC----------TGGCCAAGGGCGAAGAGGTCGAA---C.................................................................................................................................................................2940.75300000003000000000
.........................................GGACTCC-GC----------TGGCCAAGGGCGAAGAGG..........................................................................................................................................................................2740.75300030000000000000
...CGTG---------AGTTAACGGTACCGCGG........................................................................................................................................................................................................................2140.75300000000001020000
........................................................................................GGTAACGGTGCG-----------------------------------------GGCAT.......................................................................................................1770.71500000000005000000
........................................................................................GGTAACGGTGCG-----------------------------------------GGCAC.......................................................................................................1770.71500000000005000000
..................TTAACGGTACCGCGGTGGACCTTGGA.............................................................................................................................................................................................................2630.67200000010010000000
.................................................GC----------TGGCCAAGGGCGAAGA............................................................................................................................................................................1890.67600000000006000000
..................................................................................AA---CGGTAACGGTGCG-----------------------------------------GGC.........................................................................................................1860.67400000000004000000
dm3
GACCGTG---------AATTAACGGTACCGCACTGAACCTTGGACTCTAGC----------GGGCCAAAGGCGAAGGGGTCGAA---CGGTAACGGTGCG-----------------------------------------TGCACAAAGAAGACGCACCGTGAACTAACGG-TATCG-CTCTGGACCTTGGACTCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-CAAACGGTAACGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................TAACGG-TATCG-CTCTGGACCTTGGA........................................................255118.40592000000000000000000000000000000000000000000000010000000000001000000000000000000000020001000000000000000000000000000000000000000000010713301070010000001000000000000000000000000000000000000000010000000906069171340100000000010002504002618720000000000001000000000000000000000000000000000000000000000000000000200000000010000000000000000301000000
......................................................................................................................................................................TAACGG-TATCG-CTCTGGACCTTGGAC.......................................................265101.00505000000000000000000000000000000000000102010001020000011000012000000000000000000000010010000000000000000000000000000010000000000000051411120001800000000000000000000000000000000000000000000000000000100001431314000100000001000590102134361683000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001401000000
......................................................................................................................................................................TAACGG-TATCG-CTCTGGACCTTGGACT......................................................27576.60383000000000000000000000010000000000000100000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000200020000000010000000000000000000000000000000000000001000000000174401300000004000000055047525271632000000000100000000000000000000000000000000000000000000000000000000010000000100000000000000000102000000
..................................................................................................................................................................................................TCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-C.............26264.00128000000000000000000000000000000000000001000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001004000022020000000000000000000000000000000000000030020008000000330060000030101060411010000000001000000000000000000000000000000000000000000000000000000003240000006860000000000000031386000000
.......................................................................................................................................................................AACGG-TATCG-CTCTGGACCTTGGACT......................................................26555.4027700000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000030002000000000000000000000000000000000000000000000000000000000013044150000000000000004404701924970000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
..................................................................................................................................................................................................TCC---AGC----GGGCCA-----AGGGC---AAAGAGG................24241.00820000000000000000000000000000000000001000100011000000000000000000000000000000000000300010000000000000000000000000200000000000000000100100010300000000010000000000000000000000000000000000000000100000002000200010200000200170001860000000000000000000001000000000000000000000000000000000000000000000301000000273000000000000000654000000
..................................................................................................................................................................................................TCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-..............25235.007000000000000000000000002000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000101000000020008000100050501370000000000000000000000000000000000000000000000000000000000000000000101000000212000000000000001344000000
...............................................................................................................................................................CGTGAACTAACGG-TATCG-CTCTGG................................................................24534.201710000000000000000000000000000000000000000001000201000000000010000000000000000000000000000000000000000000000000010000000000000000000700170001110010010010000000000000000000000000000000000000003100000200001000200000000000001102013514100000000000100000000000000000000000000000000000000000000000000000923010000004721000000000000000000000005
.......................................................................................................................................................................AACGG-TATCG-CTCTGGACCTTGGAC.......................................................25530.4015200000000000000000000000000000000000000001000000000100000002000000000000000000000000000000000000000000000000000000000000000000000000010140104000000000000000000000000000000000000000000000000000000000078609000000000001000250201316400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................CGTGAACTAACGG-TATCG-CTCTGGA...............................................................25527.8013900000000000000000000000000000000000000001000102010000000002200000000000000000000000000000000000010000000000000000000000000000000001000201100000000002000000000000000000000000000000000000000000000010000001000000000000000280240105340000000000001000000000000000000000000000000000000000000000000000004200000000311000000000000000010000006
.......................................................................................................................................................................AACGG-TATCG-CTCTGGACCTTGGA........................................................24525.601280000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000100023000100000000000000000000000000000000000000000000000000000000001481083300000000000001010070105130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TAACGG-TATCG-CTCTGGACCTTGG.........................................................24524.0012000000000000000000000001000000000000000001020000001000000000000000000000000000000000030000000000000000000000000000000000000000000002030240301000000000000000100000000000000000000000000000000000000000006170180000000000000008110088160000000001000000000000000000000000000000000000000000000000000000000000000000110000000000000000001000000
...............................................................................................................................................................CGTGAACTAACGG-TATCG-CTCTG.................................................................23519.409700000000000000000000000000000000000000000100003000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002400300000000000000000000000000000000000100000013000000002200000000000130201180000000000000000000000000000000000000000000000000000000000000000001111210000005513000000000000000000000000
..........................................................................................TAACGGTGCG-----------------------------------------TGCACAAAGAAGACGC............................................................................................26318.33550000000000000000000000000000000000000000001010000000010000000000000000000000000000000000000000000000000000000000100100000000000000000003000000160210000100000000000000000000000000000000000000000200010000000030104000101000000000000000000000000000001000000000000000000000000000000000000007000000002000000330000000000001000132000000
.............................................................................................................................................TGCACAAAGAAGACGCACCGTGAACT..................................................................................26615.6794000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010011013100000000000000000000000000000000002090000200140000019000200000900010700010000000001100000000000000000000000000000000000000000000000000000001001000000121000000000000000020000000
..................................................................................................................................................................................................TCC---AGC----GGGCCA-----AGGGC---AAAGAG.................23215.50310000000000000000000000000000000000010000000010000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000200000000000000000006000000000102210000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000003232000000
...............................................TAGC----------GGGCCAAAGGCGAAGGG...........................................................................................................................................................................21114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000200101010000000000000000000000000000000000000000000000000000000000000000001100000000121000000000000000000000000
...............................................TAGC----------GGGCCAAAGGCGAAGG............................................................................................................................................................................20114.00140000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000211000000350000000000000000000000000
..................................................................................................................................................................................................TCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-CA............27213.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000200020110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTAACGGTACCGCACTGAACCTTGGAC............................................................................................................................................................................................................27113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100300000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000200000001220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAACGGTACCGCACTGAACCTTGGAC............................................................................................................................................................................................................26113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000010101420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCTAGC----------GGGCCAAAGGCGAAGGGG..........................................................................................................................................................................24112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000001010201220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTGGACTCTAGC----------GGGCCAAAGGCGAA..............................................................................................................................................................................26112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000100000000000000000000000000000000000000000300000000000000200000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................TCTAGC----------GGGCCAAAGGCGAAGGG...........................................................................................................................................................................23111.00110000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000100000101100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000
..................................................................................................................................................................................................................CCA-----AGGGC---AAAGAGGT-CAAACGGT......24211.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000040000001000300000100000000010000000000000000000000000000000000000000000000000000000000001000000110000000320000000000000000000000000
...............................................................................................................................................................CGTGAACTAACGG-TATCG-CTCTGGACC.............................................................27510.60530000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000100000000000000000000000000000000000000000000000000000000000000000000000000000013070122150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CA-----AGGGC---AAAGAGGT-CAAACGGTAAC...2629.50190000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000511000000000000002011000000
.............................................................................................................................................................................TATCG-CTCTGGACCTTGGACTCC---AGC----..........................................2639.332800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110010002000000000000000000000000000000000000000000000000000000000001000000000000000000601101040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TGCACAAAGAAGACGCACCGTGA.....................................................................................2389.13730000000000000000000000000000000000000000101000000000000004110000000000000000000000000000000000000000000000000000000700000000000000000000000000100001120080000000000000000000000000000000000000400008080000012000000000300200100000000000000000000000000000000000000000000000000000000000000000000000501000000253000000000000000000000000
.............................................TCTAGC----------GGGCCAAAGGCGAAGG............................................................................................................................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000
..................................................................................................CG-----------------------------------------TGCACAAAGAAGACGCACCGT.......................................................................................2348.25330000000000000000000000000000000000000010000020101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000810000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000004703000000
....................................................................................................................................................................ACTAACGG-TATCG-CTCTGGACCTTGGA........................................................2758.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000098801300000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCTAGC----------GGGCCAAAGGCGAAGGGGTC........................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010100010000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000001000000
.............................................TCTAGC----------GGGCCAAAGGCGAAGGGGT.........................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000110000000000000300000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
.............................................TCTAGC----------GGGCCAAAGGCGAAG.............................................................................................................................................................................2118.0080000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000100000020000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGAACTAACGG-TATCG-CTCTGGACCT............................................................2657.603800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000071201700000000000000110303100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CGG-TATCG-CTCTGGACCTTGGACT......................................................2457.203600000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000110101000000000000000704051120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AACGG-TATCG-CTCTGGACCTTGG.........................................................2357.00350000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001011034300000000000010000000000000000000000000000000000000000000000230300000000000000020500310000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................CA-----AGGGC---AAAGAGGT-CAAACGGT......2327.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000301000000000000000000000000000000000000000000000000000000000000000000000000001101000000112000000000000000000000000
......................................................................................................................................................................TAACGG-TATCG-CTCTGGACC.............................................................2056.803400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000042421000000000000000010201010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000103000000
..................................................C----------GGGCCAAAGGCGAAGGGGTC........................................................................................................................................................................2126.50130000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000020000000000000200000000100000000100000000000000000000000000000000000000000000000000000000000000000000001000000020000000000000000001000010
....................................................................................................................................................................................TCTGGACCTTGGACTCC---AGC----GGGC......................................2446.25250000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000003132000200000000000000000000000000000000000000000000000000000000000000400010000000000000400210000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...CGTG---------AATTAACGGTACCGCACTGAACC..................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AACTAACGG-TATCG-CTCTGGACCTT...........................................................2556.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001140100000000000000080301380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGAACTAACGG-TATCG-CTCTGGACC.............................................................2556.003000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000053401000000000000000010200210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CG-----------------------------------------TGCACAAAGAAGACGCACCGTG......................................................................................2446.00240000000000000000000000000000000000001020000010000010000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000700000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000011000000
.......................................................................................................................................................................AACGG-TATCG-CTCTGGACCTTGGACTC.....................................................2726.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000010201150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAGC----------GGGCCAAAGGCGAAGGGG..........................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000100000000
........................................................................................................................................................................ACGG-TATCG-CTCTGGACCTTGGACT......................................................2556.00300000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000400000000000000020314290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAGC----------GGGCCAAAGGCGAAGGGGTC........................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000013000000000000000000000000
..................TTAACGGTACCGCACTGAACCTTGG..............................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000010000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CTCC---AGC----GGGCCA-----AGGGC---AAAGAGG................2525.50110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010301210000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................C---AGC----GGGCCA-----AGGGC---AAAGAGGT-C.............2425.50110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000100000100000000010000001000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000100000000
....................................................................................................................................................................ACTAACGG-TATCG-CTCTGGACCTTGG.........................................................2655.20260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000003310600000000000000030102040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................TGCACAAAGAAGACGCACCGTGAAC...................................................................................2565.17310000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100100500000000000000000000000000000000000000000000005000000002000000000200140401000000000000000000000000000000000000000000000000000000000000000000000100000000101000000000000000000000000
.................................................................................................................................................................TGAACTAACGG-TATCG-CTCTG.................................................................2165.17310000000000000000000000000000000000000000000010000020210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002000000000000000000000000000000000000000000000000002004000000100000000000000000000000000000000000000000000000000000010100240000000000000001410000000100000000000000000000000000
.............................................................................................................................................................................................TGGACTCC---AGC----GGGCCA-----AGGGC---AAA....................2575.143600000000000000000000000000000000000000001000000000000000000000000000000000000000000000200000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000100000300030000000000000000000000000000000000000000000000000000000000000000000101000000642000000000000000000000000
..........................................................................................TAACGGTGCG-----------------------------------------TGCACAAAGAAGACG.............................................................................................2545.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000001000000000000000000000000000000000000000000000000000000000000000000000000000000004000001001000000140000000000000001200000000
...................................................................................................................................................................................................CC---AGC----GGGCCA-----AGGGC---AAAGAGGT-C.............2525.00100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100010101200000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000
....................AACGGTACCGCACTGAACCTTGGACTC..........................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCTAGC----------GGGCCAAAGGCGAAA.............................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TCGAA---CGGTAACGGTGCG-----------------------------------------TGC.........................................................................................................21184.948900000000000000000000000100000000000010000110000122111200000100000000000000000000001001000000000000000000000000000000000000000000001000000022221011000100041000000000000000000000000000000000000120002020000300511000000330000000010000000000000000000000000000010000000000000000000010000000000000000103000000460000000000000002111000000
.............................................................................................................................................................................TATCG-CTCTGGACCTTGGACT......................................................2164.83290000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103101010000000010130202001000000000000000000000000000000000000000000001000240000000000000000400000000000000000000000000000000000
..........................................................................AGGGGTCGAA---CGGTAACGGTG.......................................................................................................................................................2164.83290000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000200000000000000000000000000000000000020001000000000031000000000310000000220000000000000000000000000000000000000000000000000000000000000000000102000000300003000000000000100000000
..................................................................................................CG-----------------------------------------TGCACAAAGAAGACGCACCGTGA.....................................................................................2544.751900000000000000000000000000000000000010000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001121000000
.............................................................................................................................................TGCACAAAGAAGACGCACCGTG......................................................................................2284.63370000000000000000000000010000000000000000100000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000130000000000000000000000000000000000000020002007030000001000000000102000000000000000000000000000000000000000000000000000000300000000000001000002000000000010000000000000000000000000
..................................................................................................CG-----------------------------------------TGCACAAAGAAGACGCACCGTGAAC...................................................................................2744.50180000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030802010000000000000000000000000000000000000000000000000000000000000000000001000000002000000000000000000000000
.....................................................................................................................................................................CTAACGG-TATCG-CTCTGGACC.............................................................2154.40220000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000010212106000000000000000000000000000000000000000000000100020000000000000000000000000001000000000000001000000000
.............................................................................................................................................................................TATCG-CTCTGGACCTTGGACTCC---AGC----G.........................................2734.33130000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000010000300000000100000000000100000300000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AACTAACGG-TATCG-CTCTGGACCTTG..........................................................2654.20210000000000000000000000000000000000000000000020000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100010301160000000000001000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
......................................................................................................................................................................TAACGG-TATCG-CTCTGGAC..............................................................1954.20210000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002630700000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................TCC---AGC----GGGCCA-----AGGGC---AAAGA..................2224.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000001000000
.........................................................................AAGGGGTCGAA---CGGTAACGGT........................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................CTCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-C.............2724.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001040000000000010000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................AAGGGGTCGAA---CGGTAACGGTGC......................................................................................................................................................2314.0040000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GG-TATCG-CTCTGGACCTTGGA........................................................2174.002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050661100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAACGGTACCGCACTGAACCTTGG..............................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................GAAGGGGTCGAA---CGGTAACGGTG.......................................................................................................................................................2314.0040000000000000000000000000000000000000000000010000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AAGGGGTCGAA---CGGTAACGGTG.......................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................CGTGAACTAACGG-TATCG-CTCTGGAC..............................................................2654.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040502180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGAACCTTGGACTCTAGC----------GG..........................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TG---------AATTAACGGTACCGCACTGAACC..................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CGAAGGGGTCGAA---CGGTAACGGTGCG-----------------------------------------............................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................CTCC---AGC----GGGCCA-----AGGGC---AAAGAGGT-..............2624.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................GGCCA-----AGGGC---AAAGAGGT-CAAACGGT......2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCGCACTGAACCTTGGACTCTAGC----------GGG.........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTGAACCTTGGACTCTAGC----------GGGCC.......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GCCA-----AGGGC---AAAGAGGT-CAAACGG.......2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
...............................................TAGC----------GGGCCAAAGGCGAAGGGGTCGA......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACCGTG---------AAATAACGGTACCGCACTGGACCTTGGACTCAAGC----------CGGCCAAGGGAACAGAGGTCAAA---CGGTAACGGTGC-------------------------------------GGACAAGCACAAAGAGGACGCACCGTGAACTAACGG-GACCTGGGTTGGATCTTGTACCCA---AGC----GGGCCG-----TGCGC---AAAAGGGGGAAA----TAACGG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................CAAGCACAAAGAGGACGCACCGTG......................................................................................24201.402850001022
............................................................................................................................................................................................TTGTACCCA---AGC----GGGCCG-----TGCGC---AA.....................25201.152300000023
.........................................................................................................................................GACAAGCACAAAGAGGACGCACCG........................................................................................24200.751515000000
.........................................................................................................................................GACAAGCACAAAGAGGACGCACC.........................................................................................23200.551111000000
.........................................................................................................................................GACAAGCACAAAGAGGACGCACCGTG......................................................................................26200.551111000000
...........................................................................................................................................CAAGCACAAAGAGGACGCACCGT.......................................................................................23200.2555000000
.........................................................................................................................................GACAAGCACAAAGAGGACGCACCGTGA.....................................................................................27200.2043000100
.................................................................................................................................................................TGAACTAACGG-GACCTGGGTTGGATCT............................................................2750.2010000100
...........................................................................................................................................................................................CTTGTACCCA---AGC----GGGCCG-----TGCG...........................23200.2044000000
...................TAACGGTACCGCACTGGACCTTGGACT...........................................................................................................................................................................................................2770.1411000000
...................TAACGGTACCGCACTGGACCTTGGAC............................................................................................................................................................................................................2670.1410000001
.....................ACGGTACCGCACTGGACCTTGGACT...........................................................................................................................................................................................................2570.1411000000
....................AACGGTACCGCACTGGACCTTGGAC............................................................................................................................................................................................................2570.1411000000
.........................................................................................................................................GACAAGCACAAAGAGGACGCACCGT.......................................................................................25200.1022000000
...........................................................................................................................................................................................CTTGTACCCA---AGC----GGGCCG-----TGCGC---A......................25200.1022000000
...........................................................................................................................................................................................CTTGTACCCA---AGC----GGGCCG-----TGCGC---.......................24200.1022000000
........................................................................................................................................GGACAAGCACAAAGAGGACGCACC.........................................................................................24200.1022000000
.............................................................................................................................................AGCACAAAGAGGACGCACCGTG......................................................................................22200.1021000010
...............................................................................................................................................................CGTGAACTAACGG-GACCTGGGTTG.................................................................24200.1022000000
...................................................................................................................................................................................................CA---AGC----GGGCCG-----TGCGC---AAAAGGGGGA.............26180.0611000000
........................................................................................................................................GGACAAGCACAAAGAGGACGCACCGTG......................................................................................27200.0511000000
...........................................................................................................................................CAAGCACAAAGAGGACGCACCGTGAAT...................................................................................27200.0511000000
.................................TGGACCTTGGACTCAAGC----------CGG.........................................................................................................................................................................................21200.0510000100
.........................................GGACTCAAGC----------CGGCCAAGGG..................................................................................................................................................................................20200.0510000010
...............................................................................................................................................................CGTGAACTAACGG-GACCTGGG....................................................................21200.0511000000
................................................................................................................................................ACAAAGAGGACGCACCGTGAACT..................................................................................23200.0511000000
.................................................................................................................................................................TGAACTAACGG-GACCTGGGTTGT................................................................23200.0511000000
..............................................................................................................................................................................................GTACCCA---AGC----GGGCCG-----TGCGC---AAAAT..................26200.0511000000
.................................................................................................................................................CAAAGAGGACGCACCGTGAACTAACGG-............................................................................27200.0511000000
.................................................................................................................................................................TGAACTAACGG-GACCTGGGTTGG................................................................23200.0511000000
............................................................................................................................................................................................TTGTACCCA---AGC----GGGCCG-----TGC............................21200.0511000000
............................................................................................................................................AAGCACAAAGAGGACGCACCGTGAA....................................................................................25200.0511000000
........................................................................................................................................................GACGCACCGTGAACTAACGG-GACCTGG.....................................................................27200.0511000000
................................................................................................................................................ACAAAGAGGACGCACCGTGAACTAACG..............................................................................27200.0511000000
..........................................................................................................................................ACAAGCACAAAGAGGACGCACC.........................................................................................22200.0511000000
..........................................................................................................................................................CGCACCGTGAACTAACGG-GACCTGGGT...................................................................27200.0511000000
............................................................................................................................................AAGCACAAAGAGGACGCACCGTG......................................................................................23200.0511000000
...........................................................................................................................................................................................CTTGTACCCA---AGC----GGGCCG-----TG.............................21200.0511000000
...............................................................................................................................................................................................................GGGCCG-----TGCGC---AAAAGGGGGA.............21200.0511000000
.............................................................................................................................................AGCACAAAGAGGACGCACCGTGAACT..................................................................................26200.0511000000
...........................................................................................................................................CAAGCACAAAGAGGACGCACCG........................................................................................22200.0511000000
.........................................................................................................................................GACAAGCACAAAGAGGACGCACCC........................................................................................24200.0511000000
.......................................TTGGACTCAAGC----------CGGCCAAGGG..................................................................................................................................................................................22200.0511000000
............................................................................................................................................AAGCACAAAGAGGACGCACCGTGAACT..................................................................................27200.0510100000
...........................................................................................................................................................GCACCGTGAACTAACGG-GACCTGG.....................................................................24200.0511000000
.............................................................................................................................................AGCACAAAGAGGACGCACCGTGAACTA.................................................................................27200.0511000000
............................................................................................................................................AAGCACAAAGAGGACGCACCGTGAAC...................................................................................26200.0511000000
.........................................................................................................................................GACAAGCACAAAGAGGACGCAC..........................................................................................22200.0510000100
droYak3
GACCGTG---------AGTTAACGGTACCGCGCTGGACCTTGGACTCAAGC----------CAGCCAAGGGCACAAAGGTCGAA---CGGTAACGGTGC------------------------------GGACTTTGGACAGGCACAAAGAGGACGCACCGTGAACTAACGG-GACAT-GTTTGGACCTTGTACCCG---AGC----GAGCCG-----TGTGC---AAAAAGGG-AAA----TAACGG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................CTTTGGACAGGCACAAAGAGGACGC............................................................................................25202.5050046000000004
....................................................................................................................................CTTTGGACAGGCACAAAGAGGACG.............................................................................................24202.1042042000000000
....................................................................................................................................CTTTGGACAGGCACAAAGAGGACGCA...........................................................................................26201.8036036000000000
.............................................................................................................................................GGCACAAAGAGGACGCACCGTGAACC..................................................................................26201.1523002300000000
.................................................................................................................................GGACTTTGGACAGGCACAAAGAGGA...............................................................................................25200.9018018000000000
.................................................................................................................................GGACTTTGGACAGGCACAAAGAGGACG.............................................................................................27200.9018080000000010
...............................................................................................................................................................CGTGAACTAACGG-GACAT-GTTTGG................................................................24200.8016016000000000
.............................................................................................................................................GGCACAAAGAGGACGCACCGTGAA....................................................................................24200.8016021400000000
.......................................................................................................................................................................................GGACCTTGTACCCG---AGC----GAGCCG-----TG.............................25200.8016016000000000
.................................................................................................................................................................TGAACTAACGG-GACAT-GTTTGGACC.............................................................25200.7515001300020000
...................................................................................................................................ACTTTGGACAGGCACAAAGAGGACG.............................................................................................25200.7014014000000000
......................................CTTGGACTCAAGC----------CAGCCAAGGG..................................................................................................................................................................................2380.63505000000000
....................AACGGTACCGCGCTGGACCTTGGACTC..........................................................................................................................................................................................................27200.5511000000000011
...................................................................................................................................ACTTTGGACAGGCACAAAGAGGA...............................................................................................23200.5511011000000000
.................................................................................................................................GGACTTTGGACAGGCACAAAGAGG................................................................................................24200.5010010000000000
...............................................................................................................................................................................................TACCCG---AGC----GAGCCG-----TGTGC---AAAAAGGG-A.............2990.44400000000004
.....................................................................................................................................TTTGGACAGGCACAAAGAGGACGCA...........................................................................................25200.35707000000000
.................................................................................................................................................CAAAGAGGACGCACCGTGAACTAACGG-............................................................................27200.35700700000000
....................AACGGTACCGCGCTGGACCTTGGAT............................................................................................................................................................................................................25200.30600000000006
....................................................................................................................................................AGAGGACGCACCGTGAACTAACGG-GA..........................................................................26200.30600600000000
.................................................................................................................................GGACTTTGGACAGGCACAAAGAGGAC..............................................................................................26200.30606000000000
....................................................................................................................................................AGAGGACGCACCGTGAACTAACGG-............................................................................24200.30600600000000
...............................................................................................................................................................CGTGAACTAACGG-GACAT-GTTTGGAC..............................................................26200.25505000000000
..........................................................................................TAACGGTGC------------------------------GGACTTTGGACAGGCA........................................................................................................25200.25505000000000
.......................................TTGGACTCAAGC----------CAGCCAAGGGCACA..............................................................................................................................................................................2680.25202000000000
.....................................................................................................................................................GAGGACGCACCGTGAACTAACGG-GA..........................................................................25200.25500500000000
................................................................................................................................................ACAAAGAGGACGCACCGTGAACTAACG..............................................................................27200.25505000000000
.......................................................................................................................................TGGACAGGCACAAAGAGGACGCACC.........................................................................................25200.25505000000000
..........................................................................................................................................ACAGGCACAAAGAGGACGCACC.........................................................................................22200.20400400000000
..................................................................................................................................................AAAGAGGACGCACCGTGAACTAACGG-GA..........................................................................28200.20400400000000
...................TAACGGTACCGCGCTGGACCTTGGACTC..........................................................................................................................................................................................................28200.20410300000000
......................................................................................................................................................................................TGGACCTTGTACCCG---AGC----GAGCCG-----TG.............................26200.20404000000000
.............................................................................................................................................GGCACAAAGAGGACGCACCGTGA.....................................................................................23200.20404000000000
...........................................................................................................................................CAGGCACAAAGAGGACGCACCGTG......................................................................................24200.20404000000000
...................................................................................................................................................................AACTAACGG-GACAT-GTTTGGACCTTG..........................................................26200.20404000000000
.........................................................................................................................................GACAGGCACAAAGAGGACGCACC.........................................................................................23200.20402200000000
.................................................................................................................................................CAAAGAGGACGCACCGTGAACTAACG..............................................................................26200.20404000000000
.........................TACCGCGCTGGACCTTGGACTCAAGC----------C...........................................................................................................................................................................................27110.18200200000000
...................................................................................................................................ACTTTGGACAGGCACAAAGAGGACGC............................................................................................26200.15300200010000
......................................................................................................................................TTGGACAGGCACAAAGAGGACGCA...........................................................................................24200.15303000000000
.........................................................................................................................................GACAGGCACAAAGAGGACGCACCGT.......................................................................................25200.15300300000000
....................................................................................................................................CTTTGGACAGGCACAAAGAGGACGCAT..........................................................................................27200.15303000000000
...............................................................................................................................................................CGTGAACTAACGG-GACAT-GTTTGGACC.............................................................27200.15300300000000
.............................................................................................................................................GGCACAAAGAGGACGCACCGTGAACTA.................................................................................27200.15302100000000
..................................................................................................................................................AAAGAGGACGCACCGTGAACTAACGG-............................................................................26200.15300300000000
......................................................................................................................................................................TAACGG-GACAT-GTTTGGACCTTGTACC......................................................27200.15300300000000
........................................TGGACTCAAGC----------CAGCCAAGGGCACAAA............................................................................................................................................................................2770.14100100000000
........................................TGGACTCAAGC----------CAGCCAAGGGCACAA.............................................................................................................................................................................2670.14101000000000
.....TG---------AGTTAACGGTACCGCGCTGGACC..................................................................................................................................................................................................................2570.14101000000000
........................................TGGACTCAAGC----------CAGCCAAGGGCACAT.............................................................................................................................................................................2680.13100100000000
........................................TGGACTCAAGC----------CAGCCAAGGGCACA..............................................................................................................................................................................2580.13101000000000
.....TG---------AGTTAACGGTACCGCGCTGGATT..................................................................................................................................................................................................................2580.13101000000000
.........................................GGACTCAAGC----------CAGCCAAGGGCACA..............................................................................................................................................................................2480.13101000000000
........................................TGGACTCAAGC----------CAGCCAAGGGCAC...............................................................................................................................................................................2480.13100100000000
........................................TGGACTCAAGC----------CAGCCAAGGGC.................................................................................................................................................................................2280.13101000000000
......................................CTTGGACTCAAGC----------CAGCCAAGGGC.................................................................................................................................................................................2480.13101000000000
........................................TGGACTCAAGC----------CAGCCAAGGG..................................................................................................................................................................................2180.13101000000000
........................................................................................................................................................................................................AGC----GAGCCG-----TGTGC---AAAAAGGG-A.............2390.11101000000000
.................................................................................................................................................................................................CCCG---AGC----GAGCCG-----TGTGC---AAAAAGG................2590.11101000000000
................................................................................................................................................................................................ACCCG---AGC----GAGCCG-----TGTGC---AAAAAG.................2590.11100000010000
................................................................................................................................................................................................ACCCG---AGC----GAGCCG-----TGTGC---AAAAAGGT-..............2790.11101000000000
......................................................................................................................................TTGGACAGGCACAAAGAGGACGCACCG........................................................................................27200.10200200000000
....................................................................................................................................................AGAGGACGCACCGTGAACTAAC...............................................................................22200.10200200000000
.......................................................................................................................................................................................GGACCTTGTACCCG---AGC----GAGCCG-----TGTG...........................27200.10202000000000
.............................................................................................................................................................................................TGTACCCG---AGC----GAGCCG-----TGTGC---A......................23200.10202000000000
................................................................................................................................................................GTGAACTAACGG-GACAT-GTTTGGA...............................................................24200.10202000000000
.................................................................................................................................................................................T-GTTTGGACCTTGTACCCG---AGC----GAGC......................................26200.10201100000000
.........................................................................................................................................GACAGGCACAAAGAGGACGCACCGTGA.....................................................................................27200.10200200000000
.......................................................................................................................................TGGACAGGCACAAAGAGGACGC............................................................................................22200.10200200000000
.................................................................................................................................................CAAAGAGGACGCACCGTGAACT..................................................................................22200.10200200000000
...........................................................................................................................................CAGGCACAAAGAGGACGCACCGTGA.....................................................................................25200.10202000000000
..................................................................................................................................GACTTTGGACAGGCACAAAGAGGA...............................................................................................24200.10202000000000
.......................GGTACCGCGCTGGACCTTGGAC............................................................................................................................................................................................................22200.10200000000002
.........................................................................................................................................GACAGGCACAAAGAGGACGCA...........................................................................................21200.10202000000000
.......................................................................................................................................................................................GGACCTTGTACCCG---AGC----GAGCC.....................................22200.10202000000000
....................AACGGTACCGCGCTGGACCTTGGAC............................................................................................................................................................................................................25200.10200200000000
.......................................................................................................................................TGGACAGGCACAAAGAGGACGCAC..........................................................................................24200.10200200000000
................................................................................................................................................................................................ACCCG---AGC----GAGCCG-----TGTGC---AAAAAA.................25130.08101000000000
.........................................................................CAAAGGTCGAA---CGGTAACGGTGC------------------------------........................................................................................................................23190.05101000000000
..........................................................................AAAGGTCGAA---CGGTAACGGTGC------------------------------GG......................................................................................................................24190.05100000010000
..................TTAACGGTACCGCGCTGGACC..................................................................................................................................................................................................................21200.05100100000000
..................................................................................................................................GACTTTGGACAGGCACAAAGAGGACGC............................................................................................27200.05100100000000
.........................................................................................................................................................................CGG-GACAT-GTTTGGACCTTGTACC......................................................24200.05100100000000
.....................................................................................................................................TTTGGACAGGCACAAAGAGGAC..............................................................................................22200.05101000000000
................................................................................................................................................................GTGAACTAACGG-GACAT-GTTTG.................................................................22200.05101000000000
.........................................................................................................................................GACAGGCACAAAGAGGACGCACCG........................................................................................24200.05101000000000
................................................................................................TGC------------------------------GGACTTTGGACAGGCACAAAGA..................................................................................................25200.05100100000000
.........................................................................................................................................................................................ACCTTGTACCCG---AGC----GAGCCG-----TGTGC---.......................26200.05101000000000
.......................................................................................CGGTAACGGTGC------------------------------GGACTTTGG...............................................................................................................21200.05100100000000
............................................................................................................................................AGGCACAAAGAGGACGCACCGTGAAC...................................................................................26200.05100100000000
.......................................................................................................................................................................................GGACCTTGTACCCG---AGC----GAGCCA-----...............................23200.05101000000000
.....................................................................................................................................TTTGGACAGGCACAAAGAGG................................................................................................20200.05101000000000
...........................................................................................................................................CAGGCACAAAGAGGACGCAAT.........................................................................................21200.05101000000000
................................................................................CGAA---CGGTAACGGTGC------------------------------GGACT...................................................................................................................21200.05101000000000
...........................................................................................................................................................GCACCGTGAACTAACGG-GACAT-GT....................................................................24200.05101000000000
............................................................................................................................................AGGCACAAAGAGGACGCACCG........................................................................................21200.05101000000000
...............................................................................................................................................CACAAAGAGGACGCACCGTGA.....................................................................................21200.05101000000000
............................................................................................................................................AGGCACAAAGAGGACGCACCGTG......................................................................................23200.05101000000000
..........................................................................................................................................................................GG-GACAT-GTTTGGACCTTGTACCCG---A................................................26200.05101000000000
..........................................................................................................................................................CGCACCGTGAACTAACGG-GACAT-GC....................................................................25200.05100100000000
...................................................................................................................................................................AACTAACGG-GACAT-GTTTGGACCTTT..........................................................26200.05101000000000
.....................................................................................................................................TTTGGACAGGCACAAAGAGGACG.............................................................................................23200.05100100000000
............................................................................................ACGGTGC------------------------------GGACTTTGGACAGGC.........................................................................................................22200.05101000000000
............................CGCGCTGGACCTTGGACT...........................................................................................................................................................................................................18200.05100100000000
...............................................................................................................................................CACAAAGAGGACGCACCGTGAAC...................................................................................23200.05101000000000
...............................................................................................................................................................CGTGAACTAACGG-GACAT-GTTTGGACA.............................................................27200.05101000000000
.............................................................................................................................................GGCACAAAGAGGACGCACCGTG......................................................................................22200.05100100000000
.........................................................................................................................................GACAGGCACAAAGAGGACGCACCGTGAA....................................................................................28200.05100100000000
...................................................................................A---CGGTAACGGTGC------------------------------GGACTTTGGAC.............................................................................................................24200.05100100000000
.........................................................................................................................................GACAGGCACAAAGAGGACG.............................................................................................19200.05101000000000
...................................................................................................................................ACTTTGGACAGGCACAAAGAGGAC..............................................................................................24200.05100000010000
..................................................................................................C------------------------------GGACTTTGGACAGGCACAAAGAGG................................................................................................25200.05100100000000
.............................................................................................................................................GGCACAAAGAGGACGCACCGTGAACTAA................................................................................28200.05100100000000
...........................CCGCGCTGGACCTTGGACTCA.........................................................................................................................................................................................................21200.05100100000000
.....................................................................................................................................TTTGGACAGGCACAAAGAGGACGCAC..........................................................................................26200.05100100000000
....................................................................................................................................................................................TTTGGACCTTGTACCCG---AGC----GAGC......................................24200.05101000000000
..................................................................................................................................................AAAGAGGACGCACCGTGAACTAACGG-GAC.........................................................................29200.05100100000000
.........................................................................................GTAACGGTGC------------------------------GGACTTTGGACAGGCAC.......................................................................................................27200.05100100000000
............................CGCGCTGGACCTTGGACTCAA........................................................................................................................................................................................................21200.05100100000000
..........................ACCGCGCTGGACCTTGGACTC..........................................................................................................................................................................................................21200.05100100000000
...................................................................................................................................................AAGAGGACGCACCGTGAACT..................................................................................20200.05100100000000
.......................................................................................CGGTAACGGTGC------------------------------GGACTTTGGAC.............................................................................................................23200.05101000000000
..............................................................................................................................................................CCGTGAACTAACGG-GACAT-GTTTGGACA.............................................................28200.05101000000000
.............................................................................................................................................................ACCGTGAACTAACGG-GACAT-GTTTGGA...............................................................27200.05101000000000
................................................................................................................................................ACAAAGAGGACGCACCGTGAACT..................................................................................23200.05100100000000
.....................................................................................................................................................................................TTGGACCTTGTACCCG---AGC----GAGC......................................23200.05101000000000
...................................................................................................................................ACTTTGGACAGGCACAAA....................................................................................................18200.05101000000000
...........................................................................................................................................................GCACCGTGAACTAACGG-GACAT-GTT...................................................................25200.05101000000000
.................................................................................................................................................................TGAACTAACGG-GACAT-GTTTGGACCTT...........................................................27200.05101000000000
............................................................................................ACGGTGC------------------------------GGACTTTGGACAGGCAC.......................................................................................................24200.05101000000000
................................................................................................................................................................................AT-GTTTGGACCTTGTACCCG---AGC----GA........................................25200.05100100000000
........................GTACCGCGCTGGACCTTGGACT...........................................................................................................................................................................................................22200.05100100000000
.......................................................................................................................................................................................GGACCTTGTACCCG---AGC----GAGCCG-----TGT............................26200.05100100000000
................................................................................................................................................................GTGAACTAACGG-GACAT-GTTTGGAC..............................................................25200.05101000000000
...............................................................GCCAAGGGCACAAAGGTCGAA---CGGT..............................................................................................................................................................25200.05100100000000
..........................................................................................TAACGGTGC------------------------------GGACTTTGGACAGGC.........................................................................................................24200.05100010000000
..........................................................................................................................................ACAGGCACAAAGAGGACGCACCGT.......................................................................................24200.05101000000000
................................................................................................................................................ACAAAGAGGACGCACCGTGAACTA.................................................................................24200.05101000000000
.......................................................................................................................................TGGACAGGCACAAAGAGGACGCACCA........................................................................................26200.05101000000000
.............................................................................................................................................GGCACAAAGAGGACGCACC.........................................................................................19200.05100100000000
..........................................................................................................................................ACAGGCACAAAGAGGACGCA...........................................................................................20200.05101000000000
................................................................................................................................................ACAAAGAGGACGCACCGTGAACTAAC...............................................................................26200.05100000010000
............................................................................................ACGGTGC------------------------------GGACTTTGGACAGGCACAA.....................................................................................................26200.05101000000000
...............................................................................................................................................................CGTGAACTAACGG-GACAT-GTTTGGACCC............................................................28200.05100100000000
...........................................................................................AACGGTGC------------------------------GGACTTTGGA..............................................................................................................18200.05100100000000
...................................................................................................................................ACTTTGGACAGGCACAAAGAGG................................................................................................22200.05100000000001
...............................................................................TCGAA---CGGTAACGGTGC------------------------------GGACTTTGG...............................................................................................................26200.05101000000000
....................................................................................................................................................................ACTAACGG-GACAT-GTTTGGACCTTG..........................................................25200.05101000000000
.............................................................................................................................................GGCACAAAGAGGACGCAC..........................................................................................18200.05101000000000
...................TAACGGTACCGCGCTGGACCTTGG..............................................................................................................................................................................................................24200.05101000000000
................................................................................................................................................................GTGAACTAACGG-GACAT-GTTTGGACC.............................................................26200.05100100000000
..................................................................................AA---CGGTAACGGTGC------------------------------GGACTTTGGACA............................................................................................................26200.05100100000000
.........................................................................................GTAACGGTGC------------------------------GGACTTTGGAC.............................................................................................................21200.05100100000000
............................................................................................................................................................CACCGTGAACTAACGG-GACAT-GTTT..................................................................25200.05101000000000
..................................................................................................C------------------------------GGACTTTGGACAGGCACAAAGAGGAC..............................................................................................27200.05100100000000
...............................................................................................GTGC------------------------------GGACTTTGGAC.............................................................................................................15200.05100000000001
...................TAACGGTACCGCGCTGGACC..................................................................................................................................................................................................................20200.05100100000000
.........................................................................................GTAACGGTGC------------------------------GGACTTTGGTA.............................................................................................................21200.05101000000000
droBia1
TGCCGTGTGCAAAAAGGAGTAACGGGACGCCGCTGGACTTTGGACGCG-GCAGTGAACTTTGGACTGAGAAGGAAGGTGCCACATCTCGGCAGCGGTGCGGCACACAAACATGCCACATGCGTCTCCGTGATCAGCGGAACG--------------------------GCAG-CATCA-GGATGGACGGGGGCGGCAAGCAGT----GCGTCA-----AGGAC---AAGAGGGT-CAAACAGGAAC---SizeHit CountTotal NormTotal
No Reads
droTak1
GACCGTG---------AAGTAACGGTACCGCGCTGGACCTTGGACCCACGC----------CGCCAAAGGGCAATGAGGTCGAA---CGGTGAATCCGT------------------------------GGACTTCGGACCGGCACAAAGAGGATGCACCGTGAACTAACGG-GACAT--TTTGGACATTGGACCCT---AGC----GAGCCG-----TGTGC---AAAAAGGG-AAA----TAACGG-SizeHit CountTotal NormTotal
No Reads
droEle1
CACCGTG---------AATTAACGGTACCGCGATGGACATTGGACCCTCAC----------ACGGCAAGGGCATTAGGGTCGAA---TT-------GGC------------------------------GGAC-TCGGACCCGCACAAAGAGGACGCACCGTGAACTAACGG-TGCGG-CAGTGGACCTTGGACCCG---ATCACGCGAGCTGGCGCAAGCGCAGCACACAGGGGAAG----TAATAGTSizeHit CountTotal NormTotal
No Reads
droRho1
CACCGTG---------AATGAACGGTACCTCGATGGACCTTGGACCCGCGC----------CCGGCAAGGGCAACGAGGTCATA---CGGTAAATTGAC------------------------------GGACTTCGGACCCGCCTAAAGAGGACACACCGTGAATTAACGG-TACCT-CGATGAACCTTGGACCCG---CGC----CCGGCA-----AGGCC---AACGAGGT-CATACGGTAAATTGSizeHit CountTotal NormTotal
No Reads
droFic1
GACCGTG---------AAATAACGGTACCTCTGCGGACCCTGGACCCG------------------------------TTATAA---CGGTGAA-----------------------------------GAACTTCGGAGCCGCACAAAGACGAGAGACCGTGAACTAACGG-AACCT--TTTGTATTTTGGAAACG---ATCACGAGATCGGTCTGAAAGAAAGTTACGAGAC--------CAAGTCTSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:20 PM