ID:

dse_273

 Coordinate:

scaffold_8:3474419-3474483 -

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6

Flybase annnotation

intron [Dsec\GM22632-in]; utr3 [utr3_minus_11322]; CDS [Dsec\GM22632-cds]; CDS [Dsec\GM22632-cds]

No Repeatable elements found

Sense Strand Reads

GAACGGAGGCAGTGGATTCCGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTG

**************************************************(((((((((..((((.((..(((..((((....))))...))).)).))))...)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054

female body

 V115

head

 V114

embryo

 V113

male body
............................................................................................TAAGCTCAATTAACTGTTTGCA................................................... 22 0 1 164.00 164 89 62 8 5
............................................................................................TAAGCTCAATTAACTGTTTGCAG.................................................. 23 0 1 147.00 147 106 21 16 4
............................................................................................TAAGCTCAATTAACTGTTTGCAGT................................................. 24 1 1 91.00 91 65 4 21 1
............................................................................................TAAGCTCAATTAACTGTTTG..................................................... 20 0 1 79.00 79 8 64 1 6
............................................................................................TAAGCTCAATTAACTGTTTGC.................................................... 21 0 1 71.00 71 28 42 0 1
..................................................GTAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 0 1 61.00 61 50 0 6 5
............................................................................................TAAGCTCAATTAACTGTTTGCAGA................................................. 24 1 1 37.00 37 15 8 11 3
..................................................GTAAGCAGTGTTTGAACT................................................................................................. 18 0 1 23.00 23 0 5 18 0
............................................................................................TAAGCTCAATTAACTGTTTGCAC.................................................. 23 1 1 13.00 13 11 0 2 0
..................................................GTAAGCAGTGTTTGAACTC................................................................................................ 19 0 1 9.00 9 0 1 6 2
.............................................................................................AAGCTCAATTAACTGTTTGCAG.................................................. 22 0 1 9.00 9 9 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTT................................................ 25 2 1 8.00 8 2 5 0 1
..................................................GTAAGCAGTGTTTGAACTCGATC............................................................................................ 23 0 1 7.00 7 1 0 6 0
..................................................GTAAGCAGTGTTTGAACTCGATCTTG......................................................................................... 26 0 1 7.00 7 5 0 1 1
.............................................................................TTCTTGGACTCTTGATAAGCTCA................................................................. 23 0 1 7.00 7 2 1 2 2
...............................................................................CTTGGACTCTTGATAAGCTCA................................................................. 21 0 1 6.00 6 0 0 4 2
..................................................GTAAGCAGTGTTTGAACTCGATCTTGGT....................................................................................... 28 0 1 5.00 5 2 0 0 3
.............................................................................................AAGCTCAATTAACTGTTTGCAGT................................................. 23 1 1 5.00 5 5 0 0 0
.............................................................................................AAGCTCAATTAACTGTTTGCA................................................... 21 0 1 5.00 5 5 0 0 0
..........................................................TGTTTGAACTCGATCTTGG........................................................................................ 19 0 1 4.00 4 3 0 1 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTTA............................................... 26 3 1 3.00 3 0 0 2 1
........................................................AGTGTTTGAACTCGATCTTGG........................................................................................ 21 0 1 3.00 3 3 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 26 0 1 3.00 3 3 0 0 0
..................................................GTAAGCAGTGTTTGAACTCG............................................................................................... 20 0 1 3.00 3 0 0 1 2
..............................................................................................AGCTCAATTAACTGTTTGCAGT................................................. 22 1 1 3.00 3 2 1 0 0
..................................................GTAAGCAGTGTTTGAACTCGATCT........................................................................................... 24 0 1 3.00 3 0 2 0 1
..................................................GTAAGCAGTGTTTGAACTCGATCTT.......................................................................................... 25 0 1 2.00 2 2 0 0 0
.............................................................................................AAGCTCAATTAACTGTTTGC.................................................... 20 0 1 2.00 2 2 0 0 0
............................................................................................TATGCTCAATTAACTGTTTGCAGT................................................. 24 2 1 2.00 2 0 2 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTC.................................................................. 22 0 1 2.00 2 0 0 1 1
............................................................................................TAAGCTCAATTAACTGTTT...................................................... 19 0 1 2.00 2 0 1 1 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTA................................................ 25 2 1 2.00 2 0 2 0 0
......................................................GCAGTGTTTGAACTCGATCTTGG........................................................................................ 23 0 1 2.00 2 0 0 2 0
......................GGCGAGGATGACAACGAAT............................................................................................................................ 19 0 1 2.00 2 0 0 2 0
............................................................................................TAAGCCCAATTAACTGTTTG..................................................... 20 1 1 2.00 2 0 2 0 0
............................................................................................TGAGCTCAATTAACTGTTTG..................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTT....................................................... 18 0 1 1.00 1 1 0 0 0
.............................................................................TTCTTGGACTCTTGATAAGC.................................................................... 20 0 1 1.00 1 0 0 1 0
................................................................................................CTCAATTAACTGTTTGCAGT................................................. 20 1 1 1.00 1 1 0 0 0
.............................................................................................AATCTCAATTAACTGTTTG..................................................... 19 1 1 1.00 1 1 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATCTTG......................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................................................TTGGTTCTTGGACTCTTGA......................................................................... 19 0 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTTCAGT................................................. 24 2 1 1.00 1 1 0 0 0
....................................................AAGCAGTGTTTGAACTCGATCTTGGT....................................................................................... 26 0 1 1.00 1 0 0 0 1
............................................................................................TAAGCTCAATTAACTGTTTGCACT................................................. 24 2 1 1.00 1 1 0 0 0
...............ATTCCGTGGCGAGGATGACAACGAA............................................................................................................................. 25 0 1 1.00 1 1 0 0 0
...........................................................................................CTAAGCTCAATTAACTGTTTGCA................................................... 23 1 1 1.00 1 0 1 0 0
............................................................................................TAAGCTAAATTAACTGTTTGCATT................................................. 24 3 1 1.00 1 1 0 0 0
........................................................................................TTGATAAGCTCAATTAACTGTTT...................................................... 23 0 1 1.00 1 1 0 0 0
..................................................GTACGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0
............................................................................................TAAGCACAATTAACTGTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTC..................................................... 20 1 1 1.00 1 1 0 0 0
..................................................TTAAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 27 1 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCACTTAACTGTTTTCAG.................................................. 23 2 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGAA................................................ 25 2 1 1.00 1 0 0 0 1
............................................................................................TACGCTCAATTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 0 0 1
............................................................................................TAAGCTCAATTAACTGTTCG..................................................... 20 1 1 1.00 1 0 1 0 0
............................................................................................TAAGCTTAATTAACTGTTTGCA................................................... 22 1 1 1.00 1 0 1 0 0
..............................................................................TCTTGGACTCTTGATAAGCT................................................................... 20 0 1 1.00 1 0 0 0 1
..................................................GCAAGCAGTGTTTGAACTTGATCTTG......................................................................................... 26 2 1 1.00 1 0 0 0 1
...........................................................................................CTACGCTCAATTAACTGTTTGCAG.................................................. 24 2 1 1.00 1 1 0 0 0
........................................................................................TTGATAAGCTCAATTAACT.......................................................... 19 0 1 1.00 1 0 0 1 0
............................................................................................TAAGCTCAATTAACTCTTTG..................................................... 20 1 1 1.00 1 0 1 0 0
............................................................................................TAAGCTCAATTAACTTTTTGCA................................................... 22 1 1 1.00 1 1 0 0 0
...................................................TAAGCAGTGTTTGAACTCGATCT........................................................................................... 23 0 1 1.00 1 0 0 1 0
............................................................................................TAAGCTCAATTAGCTGTTTGCA................................................... 22 1 1 1.00 1 0 1 0 0
..................................................GTAAGCAGTGTTTGAACTCGAT............................................................................................. 22 0 1 1.00 1 0 0 1 0
............................................................................................TAAGCTCAATTAACTGCTTGCAGA................................................. 24 2 1 1.00 1 0 0 0 1
..................................................GTAAGCAGTTTTTGAACT................................................................................................. 18 1 1 1.00 1 0 0 1 0
............................................................................................TAAGCTCAATTAACTGTTTGCAA.................................................. 23 1 1 1.00 1 0 1 0 0
............................................................................................TAAGCTAAATTAACTGTTTGCA................................................... 22 1 1 1.00 1 0 1 0 0
.............................................................................TTCTTGGACTCTTGATAAGCTCAA................................................................ 24 0 1 1.00 1 0 0 0 1
.......GGCAGTGGATTCCGTGGCGAGGATGAC................................................................................................................................... 27 0 1 1.00 1 0 0 0 1
................................................................................TTGGACTCTTGATAAGCTCA................................................................. 20 0 1 1.00 1 0 0 1 0
..............................................................................................AGCTCAATTAACTGTTTG..................................................... 18 0 1 1.00 1 0 1 0 0
..................................................GTACGCAGTGTTGGAACTCGATCTTGG........................................................................................ 27 2 1 1.00 1 1 0 0 0
..............................................................................TCTTGGACTCTTGATAAGCTCA................................................................. 22 0 1 1.00 1 1 0 0 0
........................................................................CTTGGTTCTTGGACTCTTGATAAGCT................................................................... 26 0 1 1.00 1 1 0 0 0
...........................................................................................CTAAGCTCAATTAACTGTTTGC.................................................... 22 1 1 1.00 1 0 1 0 0
...........................................................................................CTAACCTCAATTAACTGTTTGCAG.................................................. 24 2 1 1.00 1 1 0 0 0
............................................................................................TAACCTCAATTAACTGTTTGC.................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................................................................................................CGACGACTGCTCCAGGGATTGC..... 22 0 1 1.00 1 0 0 1 0
............................................................................................TAAGCTCAATTAACTGTCTGCA................................................... 22 1 1 1.00 1 0 0 0 1
............................................................................................TAAGCTCAATTAACTTTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCAGTTT............................................... 26 3 1 1.00 1 1 0 0 0
.........................................................................TTGGTTCTTGGACTCTTG.......................................................................... 18 0 1 1.00 1 1 0 0 0
............................................................................................GAAGCTCAATTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 0 1 0 0
...............................................................................CTTGGACTCTTGATAAGCTC.................................................................. 20 0 1 1.00 1 0 0 0 1
............................................................................................TAAGCTTAATTAACTGTTTG..................................................... 20 1 1 1.00 1 0 1 0 0
............................................................................................TAAGCTCACTTAACTGTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0
.................................................................................................TCAATTAACTGTTTGCAG.................................................. 18 0 1 1.00 1 1 0 0 0
............................................................................................TAGGCTCAATTAACTGTTTGCAGT................................................. 24 2 1 1.00 1 1 0 0 0
..............................................................................................AGCTCAATTAACTGTTTGCAG.................................................. 21 0 1 1.00 1 1 0 0 0
..................CCGTGGCGAGGATGACAACGA.............................................................................................................................. 21 0 1 1.00 1 0 0 0 1
............................................................................................TAAGCTCAATTAACTGCTTGCA................................................... 22 1 1 1.00 1 0 1 0 0
....................................................................................ACTCTTGATAAGCTCAATTAACTGTT....................................................... 26 0 1 1.00 1 0 0 1 0
........................................................................................................................................ATCGACGACTGCTCCAGGGATTGC..... 24 0 1 1.00 1 0 0 1 0
..................................................GTAAGCAGTGTTTGAACTCGA.............................................................................................. 21 0 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGCACA................................................. 24 2 1 1.00 1 0 1 0 0
............................................................................................TAAGCTCAATTTACTGTTTGCAG.................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCAATTAACTGTTTGGAGT................................................. 24 2 1 1.00 1 1 0 0 0
....................................................AAGCAGTGTTTGAACTCGATCTTGG........................................................................................ 25 0 1 1.00 1 0 0 1 0
.........................................................................................ATATAAGCTCAATTAACTGCTTGCAG.................................................. 26 3 1 1.00 1 1 0 0 0
.........................................................GTTTTTGAACTCGATCTTGG........................................................................................ 20 1 1 1.00 1 1 0 0 0
...................................................................................................................CGGACGGCATCTTCTCGGCG.............................. 20 1 1 1.00 1 0 0 1 0
...........................................................................................ATAAGCTCAATTAACTGTTTGCATTT................................................ 26 3 1 1.00 1 1 0 0 0
...........................................................................................ATAAGCTCAATTAACTGT........................................................ 18 0 1 1.00 1 0 0 1 0
.....GAGGCAGTGGATTCCGTGGCG........................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
............................................................................................TAAGCTCACTTAACTGTTTGC.................................................... 21 1 1 1.00 1 0 1 0 0
...........................................................................................ATAAGCTCAATTAACTGTTTGCAGT................................................. 25 1 1 1.00 1 0 0 0 1
...............ATTCCGTGGCGAGGATGACAA................................................................................................................................. 21 0 1 1.00 1 0 0 1 0
......................................................GCAATGTTTGAACTCGATCTTGG........................................................................................ 23 1 1 1.00 1 0 0 1 0
....................GTGGCGAGGATGACAACGAA............................................................................................................................. 20 0 1 1.00 1 0 0 1 0
..................................................GTATGCAGTGTTTGAACT................................................................................................. 18 1 2 0.50 1 0 0 1 0
............................................................................................TAAGCTCAATTACCTGCTTG..................................................... 20 2 2 0.50 1 0 1 0 0
...........GAGAATCCCGTGGCGAGGA....................................................................................................................................... 19 3 20 0.10 2 1 0 0 1
............................................................................................TAAGCTCAATTAACTCTGC...................................................... 19 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

CTTGCCTCCGTCACCTAAGGCACCGCTCCTACTGTTGCTTAGACATGTCACATTCGTCACAAACTTGAGCTAGAACCAAGAACCTGAGAACTATTCGAGTTAATTGACAAACGTCGCCTGCCGTAGAAGAGCCTCTTAGCTGCTGACGAGGTCCCTAACGTCGAC

**************************************************(((((((((..((((.((..(((..((((....))))...))).)).))))...)))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054

female body

 V113

male body		 V115

head
.......................................................................................................................GGCGTAGAAGTGCCCCTTA........................... 19 3 11 3.36 37 29 6 2
................................................................................................................GTCGCCTACCATCGAAGAGCC................................ 21 3 1 1.00 1 1 0 0
.......................................................................................................................GGCGTAGAAGTGCCTGTTA........................... 19 3 20 0.65 13 9 0 4
............................................................................................................................AGAAGAGGCTTTTAGCTGC...................... 19 2 2 0.50 1 0 1 0
.....................................................................................................................CTGGCGTAGAAGTGCCCCTTA........................... 21 3 3 0.33 1 1 0 0
.......................................................................................................................GGCGTAGAAGTGCCCCTTAG.......................... 20 3 3 0.33 1 1 0 0
.........................................................................................................................CGTAGAAGTGCCTGTTATCT........................ 20 3 4 0.25 1 0 1 0
................................................CGCCCTCGTCACAAACTTG.................................................................................................. 19 3 17 0.24 4 4 0 0
.........................................................................................................................CGTAGAAGTGCCCCTTAG.......................... 18 2 5 0.20 1 0 0 1
............................CTACTGCTGCTTGGACAAGT..................................................................................................................... 20 3 6 0.17 1 1 0 0
.........................................................................................................................CGTAGAAGAGCCCCTTAAGT........................ 20 3 11 0.09 1 0 1 0
.......................................................................................................................GTCGTAGAAGTGCCCCTTA........................... 19 3 17 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_8:3474368-3474533 - dse_273 confident GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGC
droSim2 x:19899714-19899879 - dsi_283 candidate-rescued GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGC
dm3 chrX:21167361-21167526 - dme-mir-1007 Known_mirbase GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTGC
droEre2 scaffold_4690:17696718-17696883 - der_61 confident GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTGC
droYak3 X:20343085-20343250 - dya_95 confident GAACGGAGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGC
droEug1 scf7180000408193:314889-315054 + GAATGGAGGCAGTGGATTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTGC
droBia1 scf7180000302187:364098-364256 + GAACGGCGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TTG-----------GA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTGC
droTak1 scf7180000415158:280499-280664 + GAACGGCGGCAGCGGCTTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCGG-ATC---CTGAA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTGC
droEle1 scf7180000490214:749244-749409 + GAACGGAGGCAGTGGTTTCCGT------AACGAGGA---------------CGACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTGC
droRho1 scf7180000780082:45623-45788 + GAACGGTGGCAGCGGATTCCGT------GGCGAAGA---------------TGACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTAGA------TTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTGC
droFic1 scf7180000454077:618914-619078 - GAACGGCGGCAGCGGCTTCCGT------GGCGAGGA---------------TGACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTGG-ATC---TTGGA------C-CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTGC
droKik1 scf7180000302395:538326-538502 - GAACGGCGGCACCGGTTATCATCCATCGGGCGAGGA---CA---------ATGACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCGT-ATT-AATTGGT------CTTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTGC
droAna3 scaffold_13334:1054337-1054505 + dan_140 confident GAACGGCGGCACCGGCTACCGTGGTCCCGGGGACGA---------------CGACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTGC
droBip1 scf7180000396733:702495-702663 + GAACGGCGGCACTGGATACCGGGGACCTGGCGACGA---------------GGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTGC
dp5 XL_group1a:9060560-9060741 + dps_2595 GAACGGCGGCACTGGCTA---T------AGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTCC
droPer2 scaffold_15:1454016-1454196 + GAACGGCGGCACTGGCTA---T------GGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTCC
droWil2 scf2_1100000004515:162859-163016 - GAATGGCGGCACCGGC---TAT------GCCGATGA---------------GGACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG--T-----------TTAA------TTTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTAT
droVir3 scaffold_12970:7925689-7925858 - dvi-mir-1007 Known_mirbase AAAAGGAGGTGCTGTA---ACT------AATAATGT---------------TGACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTGG
droMoj3 scaffold_6482:1600606-1600770 + dmo_86 confident A----------GCGATTCCCCTAGCT--CCAAATAC---------------CGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTAC--TTGGC---CGTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTGA
droGri2 scaffold_15203:11134535-11134701 + dgr_50 confident AAAGGGCAGCACTGGCT------------ATGAAGA---------------TGACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................221164.00164895862
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................231147.0014710641621
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................24191.0091651214
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................20179.007986164
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................21171.0071281042
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................27161.006150560
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................24137.0037153118
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................18123.002300185
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................23113.001311020
.......................................................................GTAAGCAGTGTTTGAACTC.................................................................................................................1919.0090261
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG...................................................2219.0099000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................2518.0082105
.......................................................................GTAAGCAGTGTTTGAACTCGATC--...........................................................................................................2317.0071060
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................2617.0075110
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCA......................................................................2317.0072221
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA......................................................................2116.0060240
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T.....................................................................................................2815.0052300
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT..................................................2315.0055000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA....................................................2115.0055000
...............................................................................TGTTTGAACTCGATC--TTGG-......................................................................................................1914.0043010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA................................................2613.0030120
.............................................................................AGTGTTTGAACTCGATC--TTGG-......................................................................................................2113.0033000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2613.0033000
.......................................................................GTAAGCAGTGTTTGAACTCG................................................................................................................2013.0030210
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT..................................................2213.0032001
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T..........................................................................................................2413.0030102
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT.........................................................................................................2512.0022000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC.....................................................2012.0022000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTC.......................................................................2212.0020110
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................1912.0020011
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA.................................................2512.0020002
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2312.0020020
............................GGCGAGGA---------------TGACAACGAAT.............................................................................................................................................1912.0020020
.............................................................................................................................TAAGCTCAATTAACTGTT............................................................1811.0011000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGC.........................................................................2011.0010010
.................................................................................................................................CTCAATTAACTGTTT----GCAGT..................................................2011.0011000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................2511.0011000
................................................................................................TTGG-TTC---TTGGA------CTCTTGA..............................................................................1911.0011000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-T.....................................................................................................2611.0010100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT..................................................2411.0011000
...............ATTCCGT------GGCGAGGA---------------TGACAACGAA..............................................................................................................................................2511.0011000
.........................................................................................................................TTGATAAGCTCAATTAACTGTTT----.......................................................2311.0011000
.............................................................................................................................TAAGCTCAATTAACTGTTT----C......................................................2011.0011000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA.................................................2511.0010100
......................................................................................................TC---TTGGA------CTCTTGATAAGCT........................................................................2011.0010100
.........................................................................................................................TTGATAAGCTCAATTAACT...............................................................1911.0010010
........................................................................TAAGCAGTGTTTGAACTCGATC--T..........................................................................................................2311.0010010
.......................................................................GTAAGCAGTGTTTGAACTCGAT..............................................................................................................2211.0010010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA...................................................2311.0010001
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAA.....................................................................2411.0010100
.......GGCAGTGGATTCCGT------GGCGAGGA---------------TGAC....................................................................................................................................................2711.0010100
...........................................................................................................TTGGA------CTCTTGATAAGCTCA......................................................................2011.0010010
...............................................................................................................................AGCTCAATTAACTGTTT----G......................................................1811.0010001
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA......................................................................2211.0011000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCT........................................................................2611.0011000
...............................................................................................................................................................................CGACGACTGCTCCAGGGATTGC......2211.0010010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT................................................2611.0011000
................................................................................................TTGG-TTC---TTGGA------CTCTTG...............................................................................1811.0011000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTC.......................................................................2011.0010100
..................................................................................................................................TCAATTAACTGTTT----GCAG...................................................1811.0011000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG...................................................2111.0011000
..................CCGT------GGCGAGGA---------------TGACAACGA...............................................................................................................................................2111.0010100
...............................................................................................................A------CTCTTGATAAGCTCAATTAACTGTT............................................................2611.0010010
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGC......2411.0010010
.......................................................................GTAAGCAGTGTTTGAACTCGA...............................................................................................................2111.0011000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACA..................................................2411.0010001
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2511.0010010
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCATTT.................................................2611.0011000
............................................................................................................................ATAAGCTCAATTAACTGT.............................................................1811.0010010
.....GAGGCAGTGGATTCCGT------GGCG...........................................................................................................................................................................2111.0011000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT..................................................2511.0010100
...............ATTCCGT------GGCGAGGA---------------TGACAA..................................................................................................................................................2111.0010010
....................GT------GGCGAGGA---------------TGACAACGAA..............................................................................................................................................2011.0010010
droSim2
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................271348.00348327915500000000100000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................211183.00183137111312511210000000
.......................................................................GTAAGCAGTGTTTGAACTC.................................................................................................................19199.00997771130000000100000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................25169.0069160530000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCA......................................................................23165.0065063110000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................22156.00566017411521260200000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTC.......................................................................22150.00501371110000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................23148.004812121316101001001000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCT........................................................................21136.0036030510000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--...........................................................................................................23135.0035671911000001000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA......................................................................21133.0033028500000000000000
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................18126.0026018210000000500000
.............................................................................................................................TAAGCTCAATTAACTGTT............................................................18123.0023500031400001000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................24123.002300000056660000000
...............................................................................TGTTTGAACTCGATC--TTGG-......................................................................................................19121.0021018210000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCT........................................................................19120.0020019010000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA......................................................................22119.0019012420000000100000
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-......................................................................................................23118.0018014400000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTC.......................................................................20118.0018016200000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGCG.................................................25117.0017000051200000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T.....................................................................................................28116.001607180000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................26116.0016032110000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T..........................................................................................................24115.001536600000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................19114.0014100001300000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAATTAACT...............................................................28113.0013012100000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-......................................................................................................20113.0013010200000000100000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAATTAAC................................................................27113.0013010300000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................20112.001280010300000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCT........................................................................26111.001109110000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGC.........................................................................20110.001004600000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTC.......................................................................21110.001014500000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-......................................................................................................2119.00908100000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGC.........................................................................1818.00804400000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAATTAAC................................................................2918.00805030000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CT...................................................................................2217.00714200000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA...................................................2317.00700000000160000000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2617.00702050000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTC.......................................................................1917.00701600000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................2417.00701050000000100000
......................................................................................................TC---TTGGA------CTCTTGATAAGCT........................................................................2017.00705110000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAA.....................................................................2217.00703400000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-T.....................................................................................................2116.00603300000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCTC.......................................................................2316.00605100000000000000
..........................................................................................GATC--TTGG-TTC---TTGGA------CTCTTG...............................................................................2216.00604020000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................2315.00510010000120000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAA.....................................................................2415.00505000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAAC................................................................2815.00503200000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCT........................................................................1815.00503110000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCT........................................................................2215.00502300000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCC........................................................................2114.00403100000000000000
..........................................................................AGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2414.00403010000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGC.........................................................................1914.00401210000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAACT...............................................................2914.00403100000000000000
............................................................................CAGTGTTTGAACTCGATC--TTGG-......................................................................................................2213.00303000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGAT..............................................................................................................2213.00301020000000000000
.......................................................................................CTCGATC--TTGG-TTC---TTGGA------CTCTTGAT.............................................................................2713.00302100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCG................................................................................................................2013.00300010000100100000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCTCA......................................................................2813.00300120000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT.........................................................................................................2513.00302000000001000000
.....................................................................................................................................................................CTCGGAGAATCGACGACT....................1813.00301200000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGA..............................................................................1913.00310200000000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGAC.....................1912.00200200000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAAT....................................................................2512.00202000000000000000
........................................................................................................................................................CGGACGGCATCTTCTCGGA................................1912.00201100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-G.....................................................................................................2812.00202000000000000000
.......................................................................GTAAGCAGTGTTTGAACC..................................................................................................................1812.00202000000000000000
........................................................................................................................................................CGGACGGCATCTTCTCGGAG...............................2012.00202000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA.................................................2512.00200000010100000000
................................................................................GTTTGAACTCGATC--TTGG-......................................................................................................1812.00202000000000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGG............1812.00200200000000000000
...................................A---------------TGACAACGAATCTGTACAGT....................................................................................................................................2112.00202000000000000000
..........................................................................................GATC--TTGG-TTC---TTGGA------CTCTTGA..............................................................................2312.00201010000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGATAAGCT........................................................................2512.00220000000000000000
.......................................................................................................................................................................CGGAGAATCGACGACTGCTC................2012.00201100000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------C....................................................................................2112.00211000000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCTCA......................................................................2412.00202000000000000000
................................................................................GTTTGAACTCGATC--TTGG-T.....................................................................................................1912.00202000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-T.....................................................................................................2612.00201010000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGA......................1912.00201100000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA..................................................2412.00200000000110000000
...............................................................................TGTTTGAACTCGATC--TTGG-T.....................................................................................................2012.00202000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGCC........................................................................2612.00202000000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCTTGATA............................................................................2912.00202000000000000000
........................................................................................TCGATC--TTGG-TTC---TTGGA------CTCT.................................................................................2212.00220000000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-T.....................................................................................................2212.00201000000000100000
........................................................................................TCGATC--TTGG-TTC---TTGGA------CTCTTGAT.............................................................................2612.00220000000000000000
...................CGT------GGCGAGGA---------------TGACAACGAATCTGTA........................................................................................................................................2711.00100000000000010000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCT.................................................................................2411.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCG....................................................2211.00110000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAG..........................................................................2411.00100000100000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA.................................................2511.00100000000100000000
..........................................................................................GATC--TTGG-TTC---TTGGA------CT...................................................................................1811.00101000000000000000
...........................................................................GCAGTGTTTGAACTCGATC--TTG........................................................................................................2211.00100010000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAG..........................................................................1711.00100000001000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCC........................................................................2211.00100100000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-TT....................................................................................................2211.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA................................................2611.00100000000010000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GA.....................................................2111.00110000000000000000
....................................................................................GAACTCGATC--TTGG-TTC---TTGGA------CTC..................................................................................2511.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCT....................................................2211.00110000000000000000
........................................................................TAAGCAGTGTTTGAACTCGA...............................................................................................................2011.00110000000000000000
........................................................................TAAGCAGTGTTTGAACTCGATC--TT.........................................................................................................2411.00100010000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAA.....................................................................2311.00100100000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGG..............................................................................1911.00110000000000000000
......................................................................................................................CTCTTGATAAGCTCAATTAACTGTT............................................................2511.00100100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--C..........................................................................................................2411.00100100000000000000
......................................................................TGTAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................2711.00100010000000000000
............................................................................................TC--TTGG-TTC---TTGGA------CTCTTG...............................................................................2011.00101000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGG..............................................................................2011.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT..................................................2411.00100100000000000000
................................................................................................................................................................ATCTTCTCGGAGAATCGACGACT....................2311.00101000000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGACTGC..................2311.00100100000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--G..........................................................................................................2411.00101000000000000000
...........................................................................................................................GATAAGCTCAATTAACTGTTT----GCAG...................................................2511.00100010000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-G.....................................................................................................2211.00101000000000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGACTGC..................2211.00101000000000000000
.............................................................................................C--TTGG-TTC---TTGGA------CTCTTGATAAGC.........................................................................2511.00100010000000000000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................2511.00100010000000000000
.............................................................................AGTGTTTGAACTCGATC--TTGG-TT....................................................................................................2311.00101000000000000000
..............................................................................................................GA------CTCTTGATAAGCTCAATTAACT...............................................................2411.00100010000000000000
................................................................................................................................GCTCAATTAACTGTTT----GC.....................................................1811.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAAT....................................................................2311.00101000000000000000
........................................................................................TCGATC--TTGG-TTC---TTGGA------C....................................................................................1911.00110000000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCAATTAAC................................................................2611.00101000000000000000
.........................................................................................CGATC--TTGG-TTC---TTGGA------CTCTTGAT.............................................................................2511.00101000000000000000
...................................................................................................................................CAATTAACTGTTT----GCAGT..................................................1811.00100010000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGG......................1911.00100100000000000000
.....................................................................................AACTCGATC--TTGG-TTC---TTGGA------C....................................................................................2211.00101000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAG...................................................1911.00100000000001000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCG......................................................................2211.00100010000000000000
..............................CGAGGA---------------TGACAACGAATCT...........................................................................................................................................1911.00100010000000000000
........................................................................TAAGCAGTGTTTGAACTCGATC--...........................................................................................................2211.00100100000000000000
.........................................................................................CGATC--TTGG-TTC---TTGGA------CTC..................................................................................2011.00101000000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCAA.....................................................................2111.00100100000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTG.............................................................................................1811.00101000000000000000
..........................................................................................................................................................GACGGCATCTTCTCGGAGAATC...........................2211.00100010000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC..................................................2411.00100001000000000000
.........................................................................................CGATC--TTGG-TTC---TTGGA------CTCTTGATAAG..........................................................................2811.00100010000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCT......................................................................2311.00101000000000000000
................................................................................GTTTGAACTCGATC--TTGG-TT....................................................................................................2011.00101000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--...........................................................................................................2111.00101000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCC........................................................................2011.00101000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTG........................................................................................................2411.00100010000000000000
.......................................................................................................................................................................................GCTCCAGGGATTGCAGCTGC2011.00100010000000000000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTTT----.......................................................2511.00100010000000000000
.............................................................................................................GGA------CTCTTGATAAGCTCA......................................................................1811.00100000000000100000
......................................................................................................TC---TTGGA------CTCTTGATAAGCG........................................................................2011.00101000000000000000
...................................A---------------TGACAACGAATCTGTACAGTC...................................................................................................................................2211.00101000000000000000
.AACGGAGGCAGTGGATTCCGT------GG.............................................................................................................................................................................2311.00100001000000000000
......................................................................................ACTCGATC--TTGG-TTC---TTGGA------CTCTTGAT.............................................................................2811.00100100000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGC.........................................................................2111.00101000000000000000
...........................................................................................ATC--TTGG-TTC---TTGGA------CTC..................................................................................1811.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCC......................................................................2111.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCC........................................................................1911.00101000000000000000
............................................................................................TC--TTGG-TTC---TTGGA------CTCTTGATAAGCT........................................................................2711.00101000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAATT...................................................................2611.00101000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................2511.00100010000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCG......................................................................2311.00101000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCG........................................................................2111.00101000000000000000
.........................................................................................................................TTGATAAGCTCAATTAACTGTTT----.......................................................2311.00100010000000000000
.................................................................................TTTGAACTCGATC--TTGG-TTC---TTGGA------CT...................................................................................2711.00110000000000000000
...................................................TGACAACGAATCTGTACAGT....................................................................................................................................2011.00100100000000000000
..............................................................................GTGTTTGAACTCGATC--TTG........................................................................................................1911.00100010000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----G......................................................1911.00100001000000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC...............2511.00101000000000000000
...............................................................................................................A------CTCTTGATAAGCTCAATTAACTGT.............................................................2511.00100010000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCA......................................................................2011.00101000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCG........................................................................1911.00101000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TT.........................................................................................................2311.00100010000000000000
.......................................................................GTAAGCAGTGTTTGAA....................................................................................................................1620.50100000000001000000
...........................................................................................................TTGGA------CTCTTGATAAGCC........................................................................1820.50100100000000000000
dm3
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-TTC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCTCGGAGAATCGACGACTGCTTCAGGGATTGCAGCTGCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................2212690.002690000031000001010002000113000012315911001030002120013190000024000000000000000000131010800000093106130215517005266012111415010020234331280113200242283000000010000020000000220001000013000001411410124001965333171011950000053352000060300000024000000393525311328186792210599400631000020871213711122061823101430121479511225461015732420541000140592542014814120024202101361213022403410011000018602107165523860
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................2312396.0023960000000000000100061000000010238771100112400111221110020000741000000000000000002115131700044041113001211022312092510111100602300000120505300000031301200011100190000013002000003125019001884399261810001048114200010140000000000000101142211011311926113379682044300280000230141161847141291157619651244501826259111301020511851297817111061070110122724133110620012000212201201813980
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................2111510.00151000002000000000300100000200101144450100100001000000013010004100000000000000000041222000000100000032200002110020010000001191709016450652217000000010001000200008000000001200100761060450143481481880104700020890120000000000000000000000010500517152891934619002700000000610170830683611651212314001501020111004020112053001131720101001020051131300016010001300001601010052411150
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................241844.0084400000000000001000000000000000000000020010220002110421000000000000000000000009855000020101020032140011140369010060000072020101041210000001030027000595041005200000200000171501500160100200000000230400000030000003100000045065874131022501061040100200002300034400000657312011954660172813440020000002191640001024413003122624110923210600261002211310221215170
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................201464.0046400000000000000300000000000300000000000000000010000200000000000000000000000002000000000000000000010000000000000000000500002000406200000000000000000020110000000000000001521040051208080400102011802000030300000000000000031001001020001300000000001611103311131100150110210100311422370001013721023918300010020000401100002110001011020432301011316860
.......................................................................GTAAGCAGTGTTTGAACTCGATC--...........................................................................................................231229.002290000000000000000000000010000200000000000000000000000000000000000000000000000000102000000002000000000000000000001000001000000000000000001000000000000030000000000000003100000000230120000011120000101000000300000001210144212311019207000001010113000001012402222420000664100000100171310020302112135251110120232351200101102600101042840
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................241204.002040000000000000000000000000000000000001000011000101020000000000000000000000000000100000000000001001000090000000010000010020011010200000000100001001000000000000000000005206000602010200000000000000100000000000000000000320392168527200200000102000102000201020101110102002010210002011202021340013000101100103000614100130001100000035440
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................25179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001102000200000050000000000000000000000000000100000200000001000000001220101012000000000100010030000000020013300210200001000001000000003000001000001001021110570
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................18172.00720000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000001030400000000000000000000000000000000000010000000001000000000000000000010000020000000000010000000000000000204403220300000029000100000000000022102105000000
.......................................................................GTAAGCAGTGTTTGAACTC.................................................................................................................19170.0070000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000010000010000020000000030000000000000000000000300001100000000000000000300000000001000000000000000000000000000000000000101052050000004200400000000001008042822000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................27154.00540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182860000000000000000000000000000000000000000000000000000000000000000600000000000001010002040000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000010300000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGATC................................................26154.005400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA...................................................23146.00460000100010000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000010000001000000000000200000000000000001000000000000000000001002000102020000000011000000101000000000000000000000011024010000100000000000000000000000000000100000000010000000200000000010000000000000000000000000000000000000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT...................................................23138.0038000000000000000000000000000000000000001000000000000000000000000000000000000011000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020100020102010000001000000010000000000000000000000011010105200200000000001001100000100001000001001110000000000100000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................26134.0034000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000100000000000000000000000000000000000000000020000000000110000000000000000000000000000000000000000000100011000000001000000000303500001100000000000000000000000000000000000000000000000000000000000000001001200101100001000000000000000100000000
.............................................................................................................................TAAGCTCAATTAACTGTT............................................................18131.0031000000000000000000000100000010000000100000000100000000000000000000000000000000000000000000000100000000000000000000000000000000120011800000000000000001000000000000000000000000010000000301000000000000000000000000000011000010000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAATC.................................................25129.002900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA................................................26129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000100000110000000000000000000100000000000000000000000000030000000000000000000020011001000000000000000000000000000000000000012000020116000000000001000000000000000000000000000000000000010000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA....................................................21124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200010100000000000000000000000000000000000000000320300001103041000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCG................................................................................................................20123.0023000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010100000000000000020000000000000000000000000000011100000000000000000000000001000100000000001000001020000000000000000000010000101001000000000100000001000200000000
.......................................................................GTAAGCAGTGTTTGAACTCGA...............................................................................................................21123.0023000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000001300000000100000000000000200000000000000101000010001000000000010010010000000000000100010000000000000000000000110
.......................................................................GTAAGCAGTGTTTGAACTCGAT..............................................................................................................22121.0021000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000100001000000100000000000020000100011110000000000001000000010000000000000000100010000000000200000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCC....................................................22121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100010003114000000000000000000000000000000000000110200000000000000000000000000000000000000000000000000000000000000000000110000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................19120.0020000000000000000000000000000000010100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002200000000000000000000000000300000130000110000010000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA......................................................................21117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000001100000000000000000000000000000000000000000000000000000000000001000000000000000001010810000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................23117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000001000000000000000000000000000000000010203300000000000000000000000000100000000000000010002000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA.................................................25114.0014000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000010000000000000000000000000000001000000000000001100000000000000000000000000100000000000000002000020001000000000000000000000000000000000010000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC.....................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000320000010103000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGA..............................................................................19114.0014000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000001003000000000000000000000000000000000000000000100000000000000000100000000000101001001000100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT..................................................23111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000001110000000000000000000000000011000000000000000000200
.............................................................................................................................TAAGCTCAATTAACTGTTT----T......................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000100000100201000003000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T..........................................................................................................24110.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000010000000000000000000000000000000011000000000000000001000000000000000000000000010000000000000000000010000000000100000000000000000000000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT..................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001001000000000000000100000000000000000000000000000000000000000000010000000011010000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA......................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000002000300000010
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG...................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000020300000000000000000000000000000000000000000010001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCT....................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000420000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCA....................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000001000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCG....................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100010100000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG..................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC..................................................2417.007000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000010000000000000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GT.....................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATA--...........................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA.................................................2516.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000000000000000000000100100000000000000000000000100000000
........................................................................TAAGCAGTGTTTGAACTCGATC--...........................................................................................................2216.006000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000100000000000000000000
..............................................................................GTGTTTGAACTCGATC--TTGG-T.....................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----G......................................................1915.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GC.....................................................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT.........................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-T.....................................................................................................2815.005000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GATC...................................................2324.509000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000072000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCA......................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000010100000000
..................................................................................................................................TCAATTAACTGTTT----GCAG...................................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000
..........................................................................AGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT..................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA..................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG...................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCAATT...................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT..................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGACTG...................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTC---TTGGA------CTCTTGATAAGCTCAAT....................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GG.....................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CTTCAGGGATTGCAGCTGC1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--A..........................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GA.....................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACA..................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................GACTGCTTCAGGGATTGC......1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000
...................................................................................................G-TTC---TTGGA------CTCTTGATAAGCT........................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCT........................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001100000000
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TCTTCTCGGAGAATCGAC........................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAT................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAT..................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTGG-TTC---TTGGA------CTCTTGT..............................................................................1913.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATT--...........................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAA................................................2612.002000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT..................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCT........................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTA................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010
............................GGCGAGGA---------------TGACAACGAAT.............................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT..................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAA.....................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTA.................................................2312.002000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GAATCGACGACTGCTTCAGGGAT.........2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CTTCTCGGAGAATCGACGA......................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTG----C......................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAG...................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTAT-C.....................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAACGGAGGCAGTGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGTTGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................221488.004882051550172100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................231434.0043429376651170
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................211290.0029067316281940
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................201153.0015311113051230
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................241105.00105821340330
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................24128.002861402150
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG...................................................22120.002020000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-......................................................................................................27117.00178010800
.......................................................................GTAAGCAGTGTTTGAACTCGATC--...........................................................................................................23116.00164320160
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA....................................................21115.001515000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................25114.00143100370
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGG........................................................................................................26114.00148000420
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-A.....................................................................................................2817.0072000500
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TG.........................................................................................................2517.0073000310
.......................................................................GTAAGCAGTGTTTGAACTC.................................................................................................................1916.0060000510
.......................................................................GTAAGCAGTGTTTGAACTCG................................................................................................................2016.0060000330
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC..................................................2415.0052300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA...................................................2315.0051000040
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT..................................................2315.0055000000
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................1814.0040000040
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT...................................................2314.0042000020
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................2314.0043000010
...............................................................................................................................AGCTCAATTAACTGTTT----GCA....................................................2013.0033000000
........................................................................TAAGCAGTGTTTGAACTCGATC--...........................................................................................................2213.0030010020
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T..........................................................................................................2413.0032000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA.................................................2513.0030000030
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA......................................................................2112.0020000200
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT..................................................2212.0021010000
...........................................................................................................................GATAAGCTCAATTAACTGTTT----GCAGT..................................................2612.0020000110
..............................................................................................................................AAGCTCAATTAACTGTTT----GC.....................................................2012.0021000010
.............................................................................................................................TAAGCTCAATTAACTGTT............................................................1812.0020000020
.......................................................................GTAAGCAGTGTTTGAACTCGA...............................................................................................................2112.0020000020
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA................................................2612.0020000020
.............................................................................AGTGTTTGAACTCGATC--TGGG-......................................................................................................2111.0011000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................1911.0010000010
......................................................................................................TC---TTGGA------CTCTTGATAAGCT........................................................................2011.0010000100
....................GT------GGCGAGGA---------------TGACAACGA...............................................................................................................................................1911.0011000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA......................................................................2211.0010001000
..............GATTCCGT------GGCGAGGA---------------TGACAACGAAT.............................................................................................................................................2711.0010001000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TGGG-G.....................................................................................................2811.0011000000
..............................................................................................................................AAGCTCAATTAACTGTTT----G......................................................1911.0011000000
................................................................................................................................................................................GACGACTGCTCCAGGGATT........1911.0010000010
.......................................................................................................C---TTGGA------CTCTTGATAAGCT........................................................................1911.0010000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCG....................................................2211.0010000010
..........AGTGGATTCCGT------GGCGAGG........................................................................................................................................................................1911.0010000100
............................................................................CAGTGTTTGAACTCGATC--TGGG-......................................................................................................2211.0010000010
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCA....................................................2311.0010010000
.......................................................................GTAAGCAGTGTTTGAACTCGAT..............................................................................................................2211.0010001000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GC.....................................................2211.0010000010
...............................................................................................................................................................................CGACGACTGCTCCAGGGA..........1811.0010000010
............................................................................................................TGGA------CTCTTGATAAGCTCAA.....................................................................2011.0011000000
.........................................................................................CGATC--TGGG-ATC---TTGGA------CTCTTGATA............................................................................2611.0010000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACTT.................................................2511.0010000010
...........................................................................................ATC--TGGG-ATC---TTGGA------CTCTTGA..............................................................................2211.0010000100
..........AGTGGATTCCGT------GGCGAGGA---------------T.......................................................................................................................................................2111.0010000100
.........................................................................................................................................................GGACGGCATCTTCTCGGAGAATCGA.........................2511.0010000100
...................................................................................................................................CAATTAACTGTTT----GCAGT..................................................1811.0011000000
.................................GGA---------------TGACAACGAATCTGTTCAGT....................................................................................................................................2311.0011000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG...................................................2411.0011000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT..................................................2411.0010010000
...........GTGGATTCCGT------GGCGAGGA---------------TGACA...................................................................................................................................................2411.0010000010
.................................................................................................................................CTCAATTAACTGTTT----GCAG...................................................1911.0011000000
...........................................................................................................TTGGA------CTCTTGATAAGCTC.......................................................................1911.0010000100
...............ATTCCGT------GGCGAGGA---------------TGACAACG................................................................................................................................................2311.0010000100
..........AGTGGATTCCGT------GGCGAGGA---------------TGAC....................................................................................................................................................2411.0010000100
........GCAGTGGATTCCGT------GGCGAGGA---------------TGACA...................................................................................................................................................2711.0011000000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTCA......................................................................2311.0010000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAA.................................................2511.0011000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGA..................................................2311.0011000000
...........................................................................................................TTGGA------CTCTTGATAAGCTCA......................................................................2011.0010000010
........................................................................TAAGCAGTGTTTGAACTCGATC--TGG........................................................................................................2511.0011000000
........................................................................................................................................................................GGAGAATCGACGACTGCTCCAGGGAT.........2611.0010000100
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTC.......................................................................2211.0010000100
.........................................................................AAGCAGTGTTTGAACTCGAT..............................................................................................................2011.0011000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTC.......................................................................2011.0010000100
............................GGCGAGGA---------------TGACAACGAATCTGTTCAGT....................................................................................................................................2811.0010000100
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA..................................................2411.0010010000
.............................................................................................................................TAAGCTCAATTAACTGTTG----.......................................................1920.5010000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----CA.....................................................2120.5011000000
.............................................................................................................................TAAGCTCAATTAACTGTTC----A......................................................2040.2511000000
droYak3
GAACGGAGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAGG-ATC---TTGGA------CTCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGATTGCAGCTGCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................241427.004270183226231030000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................231306.0030652404491520000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................221164.00164811645111820000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................211112.0011244421007810000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC..................................................24185.0085018400000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--...........................................................................................................23148.00481452710010000
................................................................................................TAGG-ATC---TTGGA------CTCTTGA..............................................................................19133.0033192802100010
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG...................................................22127.0027027000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-A.....................................................................................................28122.0022060000200014
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................20122.002216006900000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT..................................................23120.0020019100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................24117.0017012101300000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA....................................................21116.0016016000000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAG........................................................................................................26115.0015010000050000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-AT....................................................................................................29115.0015000000000015
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TAGG-......................................................................................................27114.0014111100010000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................25113.001317311000000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T..........................................................................................................2418.00833100010000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCA......................................................................2218.00804000040000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTC.......................................................................2117.00713100020000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TA.........................................................................................................2517.00705000020000
.......................................................................GTAAGCAGTGTTTGAACTCGAT..............................................................................................................2216.00605100000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCA......................................................................2115.00503000020000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG...................................................2114.00404000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................2314.00402200000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC.....................................................2014.00404000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAG...................................................2014.00404000000000
.......................................................................GTAAGCAGTGTTTGAACTC.................................................................................................................1914.00402010010000
...................................................................................................G-ATC---TTGGA------CTCTTGATAAGCT........................................................................2214.00410200010000
.............................................................................................................................TAAGCTCAATTAACTGTT............................................................1814.00440000000000
......................................................................................................TC---TTGGA------CTCTTGATAAGC.........................................................................1913.00301200000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCT........................................................................2013.00311000010000
.......................................................................GTAAGCAGTGTTTGAACTCGA...............................................................................................................2113.00301100010000
.............................................................................AGTGTTTGAACTCGATC--TAGG-A.....................................................................................................2213.00302100000000
..................................................................................................................................TCAATTAACTGTTT----GCAGT..................................................1913.00302010000000
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................1813.00301010010000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAATTAACT...............................................................2913.00311100000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG...................................................2413.00303000000000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTCA......................................................................2313.00302000010000
.................................................................................................................................CTCAATTAACTGTTT----GCAGT..................................................2013.00302000010000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT..................................................2412.00201000100000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTC.......................................................................2212.00211000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT...................................................2312.00201000100000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTTT----GC.....................................................2712.00201100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA.................................................2512.00202000000000
.......................................................................GTAAGCAGTGTTTGAACTCG................................................................................................................2012.00201000010000
................................................................................................TAGG-ATC---TTGGA------CTCTTGG..............................................................................1912.00220000000000
.......................................................................................CTCGATC--TAGG-ATC---TTGGA------CTCTTGA..............................................................................2612.00201100000000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAA.....................................................................2312.00202000000000
...................................................................................................G-ATC---TTGGA------CTCTTGATAAGCTCA......................................................................2412.00201000010000
.......................................................................................................C---TTGGA------CTCTTGATAAGCTCAAT....................................................................2312.00202000000000
............................................................................................................................................................................AATCGACGACTGCTCCAGGGATTGC......2512.00201000010000
..............................................................................................................................AAGCTCAATTAACTGTTT----G......................................................1912.00202000000000
.....................................................................................................................................................................................CTGCTCCAGGGATTGCAGCTG.2112.00200000020000
...............................................................................................................................AGCTCAATTAACTGTTT----GC.....................................................1912.00202000000000
.......................................................................................CTCGATC--TAGG-ATC---TTGGA------CTCT.................................................................................2312.00202000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................1912.00220000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT..................................................2212.00202000000000
..........AGCGGATTCCGT------GGCGAGGA---------------T.......................................................................................................................................................2112.00201010000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TAGG-......................................................................................................2512.00202000000000
.............GGATTCCGT------GGCGAGGA---------------TGACAACG................................................................................................................................................2511.00101000000000
......................................................................................ACTCGATC--TAGG-ATC---TTGGA------CTCTTG...............................................................................2611.00101000000000
..............................................................................................................................................................................TCGACGACTGCTCCAGGGA..........1911.00100000010000
.......................................................................................................................................................................................GCTCCAGGGATTGCAGCTGC2011.00100000010000
.......................................................................................CTCGATC--TAGG-ATC---TTGGA------CTCTTG...............................................................................2511.00101000000000
...........................................................................................................................................................................GAATCGACGACTGCTCCAGGGAT.........2311.00101000000000
........................................................................................................................................................CGGACGGCATCTTCTCGGA................................1911.00101000000000
......................................................................................................................CTCTTGATAAGCTCAATTAAC................................................................2111.00101000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----.......................................................2011.00101000000000
.............................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGCTCA......................................................................2811.00100000010000
......................................................................................................TC---TTGGA------CTCTTGATAAGCTCAG.....................................................................2311.00100100000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCC....................................................2211.00100000100000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGTT.................................................2611.00101000000000
........................................................................TAAGCAGTGTTTGAACTCGA...............................................................................................................2011.00101000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGATT........2211.00100000010000
............................................................................................................................ATAAGCTCAATTAACTGTT............................................................1911.00101000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----T......................................................2111.00100000100000
......................................................................................................................................................................................TGCTCCAGGGATTGCAGCTG.2011.00101000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGA..........2011.00100000010000
............................GGCGAGGA---------------TGACAACGAAT.............................................................................................................................................1911.00100000010000
..................................................................................................................................................................CTTCTCGGAGAATCGACGACC....................2111.00100100000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGT..................................................2111.00101000000000
........................................................................TAAGCAGTGTTTGAACTCG................................................................................................................1911.00101000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT..................................................2411.00100100000000
............................................................................................................................................................CGGCATCTTCTCGGAGAATC...........................2011.00100000010000
......................................................................................................................CTCTTGATAAGCTCAATTAACTGTTT----GC.....................................................2811.00101000000000
................................................................................................TAGG-ATC---TTGGA------CTCTTGC..............................................................................1911.00110000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GC.....................................................2211.00110000000000
..............................................................................................................GA------CTCTTGATAAGCTCAATTAACTGTTT----.......................................................2811.00101000000000
...............................................................................................................................................................................CGACGACTGCTCCAGGGATTGCAGCT..2611.00100000010000
.....................................................................................................ATC---TTGGA------CTCTTGATAAGCTCAAT....................................................................2511.00101000000000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTT............................................................2411.00101000000000
...........GCGGATTCCGT------GGCGAGGA---------------T.......................................................................................................................................................2011.00101000000000
............................................................................CAGTGTTTGAACTCGATC--TAGG-A.....................................................................................................2311.00101000000000
.............................................................................................................................................................................ATCGACGACTGCTCCAGGGATTGCAGC...2711.00100000010000
...................................................................................................................................CAATTAACTGTTT----GCAGT..................................................1811.00101000000000
..............................................................................................................................................................................TCGACGACTGCTCCAGGGATTG.......2211.00101000000000
.......................................................................................................................TCTTGATAAGCTCAATTAACTGTTT----.......................................................2511.00101000000000
..........AGCGGATTCCGT------GGCGAGGA---------------........................................................................................................................................................2011.00100000010000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACA..................................................2411.00101000000000
................................................................................................................................................................................GACGACTGCTCCAGGGATTGCAGCTG.2611.00101000000000
.......................................................................................................C---TTGGA------CTCTTGATAAGCT........................................................................1911.00110000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGAAC................................................2611.00110000000000
.............................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGC.........................................................................2511.00100100000000
.................TCCGT------GGCGAGGA---------------TGACAA..................................................................................................................................................1911.00101000000000
.........................................................................AAGCAGTGTTTGAACTCGATC--TAGG-AT....................................................................................................2711.00101000000000
.............................................................................AGTGTTTGAACTCGATC--TA.........................................................................................................1911.00101000000000
................................................................................................TAGG-ATC---TTGGA------CTCTTGATAAGCT........................................................................2511.00100000100000
............................................................................................TC--TAGG-ATC---TTGGA------CTCT.................................................................................1811.00110000000000
.....GAGGCAGCGGATTCCGT------GGC............................................................................................................................................................................2011.00101000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCACT..................................................2311.00100100000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTT.................................................2311.00101000000000
.....................................................................................................................................................................................CTGCTCCAGGGATTGCAGCTGG2211.00101000000000
..........................................................................AGCAGTGTTTGAACTCGATC--TA.........................................................................................................2211.00101000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC.................................................2511.00100100000000
.....................................................................................................................................................................CTCGGAGAATCGACGACTGCTC................2211.00101000000000
.............................................................................................C--TAGG-ATC---TTGGA------CTCTTGATAAGCT........................................................................2611.00110000000000
....................................................................................GAACTCGATC--TAGG-ATC---TTGGA------CTCTTGG..............................................................................2911.00110000000000
.......................................................................GTAAGCAGTGTTTGAACTCGAC..............................................................................................................2211.00100100000000
....................................................................................GAACTCGATC--TAGG-ATC---TTGGA------.....................................................................................2211.00101000000000
...................................................................................................................................................................TTCTCGGAGAATCGACGACTGCTCC...............2511.00101000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCACTT.................................................2411.00101000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGG..................................................2411.00101000000000
.........................................................................AAGCAGTGTTTGAACTCGA...............................................................................................................1911.00101000000000
..........................................................................................................................................................GACGGCATCTTCTCGGAGAATCGACGA......................2711.00100000010000
................................................................................................................................................................................GACGACTGCTCCAGGGATT........1920.50101000000000
..................................................................................................................................TCAATTAACTGTTT----GCAGTT.................................................2020.50101000000000
...................................................................................................................................CAATTAACTGTTT----GCAGTT.................................................1950.20101000000000
.............GGATTCCGT------GGCGAGGA---------------CCT.....................................................................................................................................................2090.11100000100000
droEug1
GAATGGAGGCAGTGGATTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTTCGGAGAATCGAAGACTGCTCCAGGGAATGCAGCTGCSizeHit CountTotal NormTotal
No Reads
droBia1
GAACGGCGGCAGCGGATTCCGT------GGCGAGGA---------------TGACAACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TTG-----------GA------CTCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGTCGACTGCTCCAGGGACTGCAGCTGCSizeHit CountTotal NormTotal
No Reads
droTak1
GAACGGCGGCAGCGGCTTCCGC------GGCGAGGA---------------TGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCGG-ATC---CTGAA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTCCTCCAGGGTTTCCAGCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
GAACGGAGGCAGTGGTTTCCGT------AACGAGGA---------------CGACAACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTGGA------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGAATGCAGCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
GAACGGTGGCAGCGGATTCCGT------GGCGAAGA---------------TGACAGCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-ATC---TTAGA------TTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCTCGGAGAATCGACGACTGCTCCAGGGAATGCAGCTGCSizeHit CountTotal NormTotal
No Reads
droFic1
GAACGGCGGCAGCGGCTTCCGT------GGCGAGGA---------------TGACAACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTGG-ATC---TTGGA------C-CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGCCGCCTGCTCCAGGGACTCCAACTGCSizeHit CountTotal NormTotal
No Reads
droKik1
GAACGGCGGCACCGGTTATCATCCATCGGGCGAGGA---CA---------ATGACAACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCGT-ATT-AATTGGT------CTTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAACCGACGCCTGCTCCAGGGACTGCAGCTGCSizeHit CountTotal NormTotal
No Reads
droAna3
GAACGGCGGCACCGGCTACCGTGGTCCCGGGGACGA---------------CGACAACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGCTGCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................231266.0026615526117265
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................221226.002261416226843
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................211215.0021561231194107
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................201143.00143700265105
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................241101.0010146340885
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA....................................................21119.00191800100
.......................................................................GTAAGCAGTGTTTGAACTCGATC--...........................................................................................................23113.0013330007
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................25111.0011230213
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG...................................................22110.00101000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC..................................................2419.009090000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC.....................................................2018.008800000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................2414.004200110
.......................................................................GTAAGCAGTGTTTGAACTCGA...............................................................................................................2113.003300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA...................................................2313.003020001
.......................................................................GTAAGCAGTGTTTGAACTCG................................................................................................................2013.003000003
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................2313.003120000
.......................................................................GTAAGCAGTGTTTGAACTC.................................................................................................................1913.003001002
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2713.003100011
............................................................................................................................ATAAGCTCAATTAACTGTTT----G......................................................2113.003000003
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG...................................................2113.003300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTTT................................................2612.002000002
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCACT..................................................2412.002200000
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................1812.002000002
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT..................................................2312.002200000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GA.....................................................2112.002000101
................................................................................................TTGG-AAT-----A-G------CTCCCGATAAGCT........................................................................2211.001000001
.............................................................................................................................TAAGCTCAATTAACTGTTT----A......................................................2011.001100000
..........................................................................AGCAGTGTTTGAACTCGATC--TTGG-A.....................................................................................................2511.001100000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TT.........................................................................................................2511.001100000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAA...................................................2211.001100000
........................................................................TAAGCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2611.001100000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTA.................................................2511.001010000
.......GGCACCGGCTACCGTGGTCCCGGGGA..........................................................................................................................................................................2611.001100000
.......................................................................GTAAGCAGTGTTTGAACTCGAT..............................................................................................................2211.001000100
.....................................................................................................................................................................................CTCCTCAACGGCCTCCAGCT..2011.001001000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--T..........................................................................................................2411.001000001
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA................................................2511.001010000
.......................................................................GTAAGCAGTGTTTGAACTCGATC--TTG........................................................................................................2611.001100000
...............................................................................................................................AGCTCAATTAACTGTTT----G......................................................1811.001100000
...........................................................................................................................................................ATGGCATCTTCTCGGAGAAT............................2011.001000100
.......................................................................................CTCGATC--TTGG-AAT-----A-G------CTCC.................................................................................2011.001000010
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................1911.001000100
...........................................................................GCAGTGTTTGAACTCGATC--TTGG-......................................................................................................2311.001100000
...............................................................................................................................AGCTCAATTAACTGTTT----GCA....................................................2011.001100000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAG...................................................2411.001000001
.............GGCTACCGTGGTCCCGGGGA..........................................................................................................................................................................2011.001100000
..................................GA---------------CGACAACGAATCCGTACAGTCC..................................................................................................................................2411.001010000
.....................TGGTCCCGGGGACGA---------------CGACAAC.................................................................................................................................................2211.001100000
.................................................................................................................................CTCAATTAACTGTTT----GCA....................................................1811.001100000
..........................................................................................GATC--TTGG-AAT-----A-G------CTCCCGATAA...........................................................................2311.001000010
..........ACCGGCTACCGTGGTCCCGGGGA..........................................................................................................................................................................2311.001100000
......................................................................................ACTCGATC--TTGG-AAT-----A-G------CTCCCGATA............................................................................2611.001100000
.............................................................................................................................TAAGCTCAATTAACTGTTT----T......................................................2011.001000010
......................................................................................ACTCGATC--TTGG-AAT-----A-G------CTCCC................................................................................2211.001010000
...........................................................................................................................................................................GAATCGACGTCTCCTCAACGGCCT........2411.001100000
...............................................................................TGTTTGAACTCGATC--TTGG-......................................................................................................1911.001100000
................................................................................................TTGG-AAT-----A-G------CTCCCGATAAGC.........................................................................2111.001000100
droBip1
GAACGGCGGCACTGGATACCGGGGACCTGGCGACGA---------------GGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGG-AAT-----A-G------CTCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCTCGGAGAATCGACGTCTCCTCAACGGCCTCCAGTTGCSizeHit CountTotal NormTotal
No Reads
dp5
GAACGGCGGCACTGGCTA---T------AGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTTCAAGGAATGAAGCTCCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................CATCTTCTCCGAGAATCGTCGCCTGC..................2612.0020200000000
..ACGGCGGCACTGGCTA---T------AGCAAGGAG......................................................................................................................................................................2611.0010100000000
..........ACTGGCTA---T------AGCAAGGAGG.....................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGC..................2311.0010100000000
..................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTGCTT................2511.0010100000000
..........................................................................................................................................................................AGAATCGTCGCCTGCTTCAA.............2011.0010100000000
.......GGCACTGGCTA---T------AGCAAGG........................................................................................................................................................................1911.0010100000000
..........................................CAACCACCACGACAACGAATC............................................................................................................................................2111.0010100000000
...........................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGA..........2211.0010100000000
....................................GGACAACAACCACCACGACAAC.................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................CTCCGAGAATCGTCGCCTG...................1911.0010100000000
...........CTGGCTA---T------AGCAAGGAGGACAACAAC.............................................................................................................................................................2611.0010010000000
.....................................................................................................................................................................CTCCGAGAATCGTCGCCTGC..................2011.0010100000000
............................AGCAAGGAGGACAACAACCACC.........................................................................................................................................................2211.0010000010000
................................................................................................................................................................ATCTTCTCCGAGAATCGTCGCCTG...................2411.0010100000000
...............................AAGGAGGACAACAACCAC..........................................................................................................................................................1811.0010010000000
....................................................GACAACGAATCGATACAGT....................................................................................................................................1911.0010100000000
...........................................................................................................................................................................GAATCGTCGCCTGCTTCAAGGAATGAA.....2711.0010100000000
......................................................................................................................CGAATGATAAACTCCATGG..................................................................1940.2510010000000
droPer2
GAACGGCGGCACTGGCTA---T------GGCAAGGAGGACAACAACCACCACGACAACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGA-ATCGA-ATCGA----ATCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCTCCGAGAATCGTCGCCTGCTCCAAGGA-TGAAGCTCCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................A---T------GGCAAGGAGGACAACAACCACCAC.......................................................................................................................................................2612.002200000
.....................................................................................................................................................................CTCCGAGAATCGTCGCCTG...................1912.002200000
.................A---T------GGCAAGGAGGACAACAAC.............................................................................................................................................................2011.001010000
.......GGCACTGGCTA---T------GGCAAGGAGGA....................................................................................................................................................................2311.001010000
..................................................................................................................................................................CTTCTCCGAGAATCGTCGCCTG...................2211.001100000
..................................GAGGACAACAACCACCACGA.....................................................................................................................................................2011.001010000
.............................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTGC..................2811.001100000
.............................................................................................................................................................GGCATCTTCTCCGAGAATCGTCGCCTG...................2711.001100000
.......................................................................GTAAGCAGCGATTGA--TCAAT..............................................................................................................2011.001000001
droWil2
GAATGGCGGCACCGGC---TAT------GCCGATGA---------------GGACAATGAATCCATGCAATGTGAGTT--TTTTGATTTTCTTG--T-----------TTAA------TTTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCTCGGAGAATCGTCGTTTACTGCAGGGCATGCAATTATSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................GATGGCATCTTCTCGGAGAATCGTC........................2518.00800440
.............................................................................................................................................................................ATCGTCGTTTACTGCAGGGC..........2013.00301020
.............................................................................................................................................................GGCATCTTCTCGGAGAATCGT.........................2112.00200200
.............................................................................................................................................................................ATCGTCGTTTACTGCAGGGCATGC......2412.00200110
...............................................................................................................................................................................CGTCGTTTACTGCAGGGCA.........1911.00100010
........................................................................................................................................................CTGATGGCATCTTCTCGGA................................1911.00100010
...........................................................................................................................................................................GAATCGTCGTTTACTGCAGGGC..........2211.00100010
.................................................................................................................................................................TCTTCTCGGAGAATCGTCGTTTACTGC...............2711.00110000
...................................................................................................................................................................................GTTTACTGCAGGGCATGC......1811.00100010
.........................................................................................................................................................................GAGAATCGTCGTTTACTGCA..............2011.00110000
..........................................................................................................................................................GATGGCATCTTCTCGGAGAAT............................2111.00100001
.......................................................................................................................................................................CGGAGAATCGTCGTTTACTGCAGGGC..........2611.00100010
..........................................................................................................................................................GATGGCATCTTCTCGGAG...............................1811.00100010
.............................................................................................................................................................GGCATCTTCTCGGAGAATCGTC........................2211.00100100
............................................................................................................................................................................AATCGTCGTTTACTGCAGGGC..........2111.00100010
.........................................................................................................................................................TGATGGCATCTTCTCGGAGAATC...........................2311.00100010
...................................................................................................................................................................TTCTCGGAGAATCGTCGTTTACTGC...............2511.00110000
droVir3
AAAAGGAGGTGCTGTA---ACT------AATAATGT---------------TGACAACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-TTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCTCGAACAATACTCAACTGTTGCGCGGCATGAAACTGGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................GTAAGCAGTGCTTGAGCTTA................................................................................................................2011669.001669311150153310312120501014106167617181885061551935116804913014100000000000000000000081946800000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGT..................................................2211193.00119321192123115303000226301536175720491013121724451723514801657306630000000000000000112710422041900030426300000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCA....................................................221271.002710061003000000001085115319151012111491633000100050000000000000000000010301600000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGT..................................................231191.00191002411032101000072122201514315732628110100118000100000000020000123700000002000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAG...................................................231186.001860084500030000001223121010202073131711012000000000000000000010112000000021005000010
...............................................................................................................................AGCTCAATTAACTGTTT----GCAG...................................................211145.00145009320001000000120220032011012921001000001000000000000000000002000500000101000000
.......................................................................GTAAGCAGTGCTTGAGCTT.................................................................................................................191117.001170134101620000000110600015000102837080000015000000000000000000003100000010000000000
.......................................................................GTAAGCAGTGCTTGAGCTTAT...............................................................................................................21171.00710050020000100062023303500101973805000013000000000000000000001000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGA..................................................22166.0066001110100000000310010113221206102900000021000000000000000000005100000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GC.....................................................21157.00572870000000000022104202300001471101000000000000000000000000005000000002100000010
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTC.................................................23152.005200700100000000000010600000104106704000002000000000000000000002100000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAG...................................................22148.0048001900000000000000110013000003101501100000000000000000000000101000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCA....................................................20146.004600250000000000020002102000001052100000101000000000000000000003000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGT..................................................24138.003800158000200000000000000100000121301000000000000000000000000200100000000010000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----G......................................................20130.003000000000000000000000001000000332010000020000000000000000000018000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCA....................................................21129.00290060000000000023122202200000010500000000000000000000000000001000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATT..............................................................................................................22126.00260030010000000014000000100010234100000001000000000000000000004000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGT..................................................21120.002000170000000000000000000000000030000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCT..................................................................................................................18120.002000120000002100000001000000000001001000002000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTT.................................................23118.00180090000000000010001000000010110100000000000000000000000000003000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTT................................................................................................................20117.00170000010000000002001000200000021400000002000000000000000000001100000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTC.................................................24116.00160020000000000000000100000100440101000001000000000000000000000100000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTC.................................................25114.00140000000000000000000010000000012900000001000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTAA...............................................................................................................21114.00140010001010000000000001001010031100010001000000000000000000000100000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAG...................................................20111.001100110000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAA...................................................23111.00110010001000000001000000001000113100000000000000000000000000000000010000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GC.....................................................1919.0090090000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGA..................................................2419.0090060000000000000000000000000010000000000000000000000000000000200000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GC.....................................................2019.0090050000000000000000001100000000100000000000000000000000000001000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGC..................................................2218.0080005000000000000010000200000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGA..................................................2317.0070000000000000000000000000100040100000001000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTAA................................................2417.0070000000000000000000000000100000010031000000000000000000000000001000000000000000
........................................................................TAAGCAGTGCTTGAGCTTA................................................................................................................1916.0060040000002000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAT...................................................2316.0060010000000000000000000000000201100000001000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTA.................................................2315.0050010000000000000000000000001000110000000000000000000000000000001000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--TCT........................................................................................................2615.0050040000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAC...................................................2315.0050000000000000000000000000000102000110000000000000000000000000000000000000000000
.............................................................................................................................................................................ATACTCAACTGTTGCGCGGCATGA......2414.0040011000000000000000000000000000000000000000000000000000000000000000000002000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTA.................................................2414.0040000020000000000000100000000010000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTC................................................................................................................2014.0040000010000000000000010000000011000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTTC................................................2414.0040010000000000000000000000000000100000000000000000000000000000020000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATC..............................................................................................................2214.0040000000000000000000000000000011100000001000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCC................................................2614.0040010000000000000000000000010010001000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTCT................................................2414.0040010000000000000000000000000110000000001000000000000000000000000000000000000000
.........................................................................AAGCAGTGCTTGAGCTTA................................................................................................................1814.0040000000100000000000000000000000000000001000000000000000000000200000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTT............................................................1814.0040200000000000000000000000000000200000000000000000000000000000000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCA....................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTG................................................................................................................2013.0030010000000000000000000100000000000000000000000000000000000001000000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAGT..................................................2013.0030020000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCATT..................................................2213.0030010000000000001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CTCAATTAACTGTTT----GCAG...................................................1913.0030010000000000000000000000000001000000000000000000000000000001000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAAA.................................................2513.0030010000000000000000000000100000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................CAACTGTTGCGCGGCATGAAACT..2313.0030000000000000000000000000000000000000000000000000000000000000000000000003000000
.......................................................................GTAAGCAGTGCTTGAGCTTATA..............................................................................................................2213.0030000000000000000000000000000100100010000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCC................................................2513.0030000000000000000000000000000021000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTT.................................................2413.0030010000000000000000000000000100100000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTAAA..............................................................................................................2213.0030000000000000000000000000010010000000010000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAA...................................................2113.0030000000000000000000000000000100100001000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGC..................................................2313.0030012000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTAA................................................2613.0030010000000000000000000000010000000010000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTC.................................................................................................................1912.0020010000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................CAATTAACTGTTT----GCAGT..................................................1832.0060020000000000000000000010000100000000001000000000000000000000000000010000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGTC.................................................2212.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCC....................................................2212.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................CTGATAAGCTCAATTAACTGTTT----GC.....................................................2512.0020001000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................CGAACAATACTCAACTGTTGCGCGGC..........2612.0020000000000000000000000000000000000000000000000000000000000000000000001010000000
.....................................................................................................................................................................CTCGAACAATACTCAACT....................1812.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTCC................................................2412.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----.......................................................1912.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.......................................................................................................................................................................CGAACAATACTCAACTGTTGCGC.............2312.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTT.................................................2512.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTCA................................................2421.5030000000000000000000000000000200100000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCT....................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................TAAGCAGTGCTTGAGCTT.................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTTGAC--CATTTTCTGATAAG..........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--TC.........................................................................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTCT................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTA.................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCATTC.................................................2411.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAC...................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TC--TCTGGCTTCA-TTTGAC--CATTTT..................................................................................2411.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAA...................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................TC--TCTGGCTTCA-TTTGAC--CAT.....................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................GTGCTTGAGCTTATTC--TCT........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----T......................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................GAC--CATTTTCTGATAAGCTC.......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................CTCAATTAACTGTTT----GCAGTT.................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCACA..................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--...........................................................................................................2311.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................TGGCTTCA-TTTGAC--CATTTTCTGATA............................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGAAA................................................2511.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................ATAAGCTCAATTAACTGTTT----GCAGT..................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCATTA.................................................2311.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
....................CT------AATAATGT---------------TGACAACGAATC............................................................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGC..................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TTCTGATAAGCTCAATTAACTGTTT----GC.....................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................C--TCTGGCTTCA-TTTGAC--CAT.....................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ACTCAACTGTTGCGCGGCATGAAACT..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................CTGGCTTCA-TTTGAC--CATTTTCTGATA............................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGTGCTTGAGCTTATTC--TCT........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................CATTTTCTGATAAGCTCAATT...................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCAATTAACTGTTT----GCAGT..................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TTGAC--CATTTTCTGATAAG..........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----C......................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GCAGA..................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTATTC--TCTGGC.....................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................CATTTTCTGATAAGCTCAATTAACT...............................................................2511.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................AGCAGTGCTTGAGCTTATT..............................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................TGATAAGCTCAATTAACTGTTT----GCAGT..................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AATACTCAACTGTTGCGCGG...........2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GTTGCGCGGCATGAAACTG.1911.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGAT.................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................GCAGTGCTTGAGCTTATTC--TCT........................................................................................................2211.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TTCTGATAAGCTCAATTAACTGTT............................................................2411.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CATTTTCTGATAAGCTCAATTAAC................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................TCTGATAAGCTCAATTAACTGTTT----GCA....................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TATTC--TCTGGCTTCA-TTTGAC--........................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CTTCA-TTTGAC--CATTTTCTGATAA...........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................CTCTCGAACAATACTCAACT....................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAGTCT................................................2611.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................GAC--CATTTTCTGATAAGCT........................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCACT..................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTTA................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................................................C--CATTTTCTGATAAGCTCAATT...................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATACTCAACTGTTGCGCGGCATG.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAT...................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCATT..................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TGTAAGCAGTGCTTGAGCT..................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GGATGCCGCCCTCTCGAAC...............................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATTC--TCTGGCTTCA-TTTGAC--CATTTTC.................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TAAGCTCAATTAACTGTTT----GCAAA..................................................2411.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................AATACTCAACTGTTGCGCGGC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................TTCA-TTTGAC--CATTTTCTGATAAGC.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................AAGCTCAATTAACTGTTT----GCAGTAA................................................2511.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................GCTCAATTAACTGTTT----GC.....................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TAAGCAGTGCTTGAGCTTATT..............................................................................................................2111.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTTT................................................2420.5010000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGTAT................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................AAGCAGTGCTTGAGC...................................................................................................................1520.5010000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAAT..................................................2220.5010000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................AGCTCAATTAACTGTTT----GCAGAAA................................................2420.5010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTAAGCAGTGCTTGAGCTTTA...............................................................................................................2120.5010000000000000000000000010000000000000000000000000000000000000000000000000000000
droMoj3
A----------GCGATTCCCCTAGCT--CCAAATAC---------------CGACAATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTGGCTAC--TTGGC---CGTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGGCGCAGAGTGCTCAAATGTTGGACGGCATGAAGCTGASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCA....................................................221574.0057454746944
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGT..................................................241280.0028013144911913
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAG...................................................231255.00255220637145
.............................................................................................................................TAAGCTCAACTAACTGTTT----GC.....................................................211231.002311980111273
..............................................................................................................................AAGCTCAACTAACTGTTT----GCA....................................................21148.00484800000
.............................................................................................................................TAAGCTCAACTAACTGTTT----G......................................................20146.00463018403
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGC..................................................24141.00411001390
.......................................................................GTAAGCAGTGTTTGAACTAAATC--...........................................................................................................23130.003050001114
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAG...................................................22120.00202000000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAC...................................................23112.0012900030
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAGT..................................................23112.00121100010
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCACT..................................................24111.0011500060
...................................................................................................................CGTATATTGATAAGCTCAACTAACTGTT............................................................28110.00101000000
.......................................................................GTAAGCAGTGTTTGAACTAA................................................................................................................20110.0010100009
..............................................................................................................................AAGCTCAACTAACTGTTT----GC.....................................................20110.00101000000
.......................................................................GTAAGCAGTGTTTGAACTAAA...............................................................................................................2116.006200004
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TCT........................................................................................................2616.006300003
.......................................................................GTAAGCAGTGTTTGAACTAAAT..............................................................................................................2216.006200004
.....................................................................................................................TATATTGATAAGCTCAACTAACTGTT............................................................2615.005400001
...............................................................................................................................AGCTCAACTAACTGTTT----GCA....................................................2015.005500000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TCTGG......................................................................................................2815.005300002
........................................................................................TAAATC--TCTGGCTAC--TTGGC---........................................................................................2015.005500000
.............................................................................................................................TAAGCTCAACTAACTGTTT----.......................................................1915.005500000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCAG...................................................2414.004400000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAA...................................................2314.004300010
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAT...................................................2314.004300001
..............................................................................................................................AAGCTCAACTAACTGTTT----G......................................................1914.004400000
.......................................................................................CTAAATC--TCTGGCTAC--TTGGC---........................................................................................2114.004400000
..................................................................................................................................TCAACTAACTGTTT----GCAGT..................................................1913.003100110
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTT.................................................2513.003200010
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCA....................................................2313.003300000
.......................................................................GTAAGCAGTGTTTGAACTA.................................................................................................................1913.003110001
..........................................................................................................................TGATAAGCTCAACTAACTGTTT----GC.....................................................2413.003300000
...................................................................................................................CGTATATTGATAAGCTCAACTAACT...............................................................2513.003300000
.........................................................................................AAATC--TCTGGCTAC--TTGGC---........................................................................................1913.003300000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GC.....................................................2213.003200100
.............................................................................................................................TAAGCTCAACTAACTGTT............................................................1812.002200000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--T..........................................................................................................2412.002000002
.............................................................................AGTGTTTGAACTAAATC--TCTGGCTAC--T...............................................................................................2712.002200000
.............................................................................AGTGTTTGAACTAAATC--TCTGGC.....................................................................................................2312.002200000
....................................................................................GAACTAAATC--TCTGGCTAC--TTGG............................................................................................2312.002200000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TCTG.......................................................................................................2712.002200000
......................................................................................ACTAAATC--TCTGGCTAC--TTGG............................................................................................2112.002200000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GA.....................................................2112.002100100
...........................................................................................................................GATAAGCTCAACTAACTGTTT----GC.....................................................2312.002200000
...................................................................................................................CGTATATTGATAAGCTCAACT...................................................................2112.002200000
...............................................................................................................................AGCTCAACTAACTGTTT----GC.....................................................1912.002200000
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAGC..................................................2312.002000020
.....................................................................................AACTAAATC--TCTGGCTAC--TTGGC---........................................................................................2312.002200000
............................................................................................................................ATAAGCTCAACTAACTGTTT----.......................................................2012.002200000
............................................................................................................................................................CACCTATTTGGCGCAGAGTGCTC........................2312.002000002
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCATT..................................................2412.002200000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GT.....................................................2112.002101000
.........................................................................................AAATC--TCTGGCTAC--TTGG............................................................................................1812.002200000
...............................................................CATGAAATGTAAGCAGTGTTTGAA....................................................................................................................2411.001000001
......................................................................................................................ATATTGATAAGCTCAACTAACTGTTT----.......................................................2611.001100000
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAC...................................................2211.001100000
.....................................................................................................................................................................................ATGTTGGACGGCATGAAGC...1911.001100000
.......................................................................GTAAGCAGTGTTTGAACTAAATC--TC.........................................................................................................2511.001000001
.........................................................................AAGCAGTGTTTGAACTAAATC--TCTGG......................................................................................................2611.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGA..................................................2411.001100000
.......................................................................GTAAGCAGTGTTTGAACT..................................................................................................................1811.001100000
................................................................................................................................................................................CTCAAATGTTGGACGGCATGAAGCT..2511.001100000
................................................................................................TCTGGCTAC--TTGGC---CGTAT...................................................................................1911.001100000
...................................................................................................................CGTATATTGATAAGCTCAA.....................................................................1911.001100000
.........................................................................................................................TTGATAAGCTCAACTAACTGTTT----.......................................................2311.001100000
...................................................................................................................CGTATATTGATAAGCTCAACTAACTGTTT----.......................................................2911.001100000
......................................................................................................................ATATTGATAAGCTCAACTAACTGTTT----GC.....................................................2811.001100000
.....................................................................................................................TATATTGATAAGCTCAACTAACTGTTT----GC.....................................................2911.001100000
.......................................................................................................................TATTGATAAGCTCAACTAACTGTTT----.......................................................2511.001100000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGTT.................................................2611.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCT....................................................2211.001100000
.........................................................................................................................................................................................TGGACGGCATGAAGCTGA1811.001100000
................................................................................................TCTGGCTAC--TTGGC---CGTATATTGA..............................................................................2411.001000010
...............................................................................TGTTTGAACTAAATC--TCTGGC.....................................................................................................2111.001100000
...............................................................................................................C---CGTATATTGATAAGCTCAACTAACTGTT............................................................2911.001100000
........................................................................TAAGCAGTGTTTGAACTAAATC--TCT........................................................................................................2511.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAGTC.................................................2511.001000001
...................................................................................................................CGTATATTGATAAGCTCAACTAACTG..............................................................2611.001100000
........................................................................................................................................................................GCAGAGTGCTCAAATGTTGGAC.............2211.001000001
.................................................................................TTTGAACTAAATC--TCTGGCTAC--T...............................................................................................2311.001100000
..................................................................................................................................TCAACTAACTGTTT----GCAGC..................................................1911.001000010
....................................................................................GAACTAAATC--TCTGGCTAC--T...............................................................................................2011.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAAAA.................................................2511.001100000
...............................................................................................................................AGCTCAACTAACTGTTT----GCAGT..................................................2211.001000001
.......................GCT--CCAAATAC---------------CGACAATGAGTCC...........................................................................................................................................2411.001100000
................................ATAC---------------CGACAATGAGTCCATGAAATC...................................................................................................................................2511.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCAAA..................................................2411.001100000
.........................................................................AAGCAGTGTTTGAACTAAATC--TCTGGC.....................................................................................................2711.001100000
.........................................................................................................................TTGATAAGCTCAACTAACTGT.............................................................2111.001000001
.........................................................................................AAATC--TCTGGCTAC--TTGGC---CGT.....................................................................................2211.001100000
......................................................................................ACTAAATC--TCTGGCTAC--TTGGC---........................................................................................2211.001100000
..............................................................................................................................AAGCTCAACTAACTGTTT----GCAGTT.................................................2411.001100000
............................................................................................................................................................CACCTATTTGGCGCAGAGTGCTCA.......................2411.001000100
.......................................................................................CTAAATC--TCTGGCTAC--TTGG............................................................................................2011.001100000
.......................................................................................................................TATTGATAAGCTCAACTAACTGTTT----GC.....................................................2711.001100000
..........................................................................................................................TGATAAGCTCAACTAACTGT.............................................................2011.001100000
.......................................................................................CTAAATC--TCTGGCTAC--TTGGC---C.......................................................................................2211.001100000
.....................................................................................................................TATATTGATAAGCTCAACTAACTGT.............................................................2511.001000001
........................................................................TAAGCAGTGTTTGAACTAAATC--...........................................................................................................2211.001100000
....................................................................................GAACTAAATC--TCTGGCTAC--TTGGC---........................................................................................2411.001100000
.............................................................................................................................TAAGCTCAACTAACTGTTT----GCC....................................................2211.001100000
............................................................................................................................ATAAGCTCAACTAACTGTTT----GCAGT..................................................2511.001100000
.................................................................................................................................CTCAACTAACTGTTT----GCA....................................................1811.001100000
........................................................................................................................................................................GCAGAGTGCTCAAATGTTGGACGGCAT........2711.001000001
.........................................................................AAGCAGTGTTTGAACTAAATC--TCT........................................................................................................2411.001100000
................................................................................GTTTGAACTAAATC--TCTGGCTAC--TTGGC---........................................................................................2811.001100000
droGri2
AAAGGGCAGCACTGGCT------------ATGAAGA---------------TGACAGCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTGGTTA---TCCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCTCGGACAACCGTCGACCGCTGCAAGGGATGAAGCTTTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAG...................................................231122.001221220
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCA....................................................22143.0043412
.............................................................................................................................TAAGCTCAATTCACTGTTT----GC.....................................................21121.0021201
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAGT..................................................24115.0015114
..............................................................................................................................AAGCTCAATTCACTGTTT----GCAG...................................................2216.00660
..............................................................................................................................AAGCTCAATTCACTGTTT----GCAGT..................................................2316.00651
..............................................................................................................................AAGCTCAATTCACTGTTT----GCA....................................................2114.00440
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAC...................................................2313.00330
.............................................................................................................................TAAGCTCAATTCACTGTTT----G......................................................2013.00321
.......................................................................GTAAGCAGTGTTTGAACTGAATA--TC.........................................................................................................2512.00220
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAT...................................................2312.00220
..................................................................................................................................TCAATTCACTGTTT----GCAG...................................................1811.00110
..........................................................................................................................................................................ACAACCGTCGACCGCTGCAAG............2111.00110
..................................................................................................TGGTTA---TCCGACTTCATATACTGA..............................................................................2411.00110
............................................................................................................................ATAAGCTCAATTCACTGTTT----GCAGT..................................................2511.00101
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCATG..................................................2411.00110
.............................................................................................................................TAAGCTCAATTCACTGTTT----GCAGGCA................................................2611.00110
........GCACTGGCT------------ATGAAGA---------------TGACA...................................................................................................................................................2111.00101
................................................................................................................................................................................GTCGACCGCTGCAAGGGATGAA.....2211.00110
.............................................................................................................................TAAGCTCAATTCACTGTTT----.......................................................1911.00110

Generated: 10/20/2015 at 11:05 PM