dse_258

Name	Class	Family	Strand
DIVER2_LTR	LTR	Pao	+

CTATATACACTCAAAGAAAATATATGTCTTGTTGGGTCATGCAGCCGCCAAAACTGTGCAGTAGACTAATCTCATACTTGTTAATATTTAAGCCAAATTAGTCAGCGGTAGCAGTTGGGATGCCCATAGTCCAAACCGCTGCTCTCGCACGCATTTATCTGTACGGCG *********************************........((..((..((((((((.((.(((((((......((((........))))....))))))).)).))).))))).))..)).........**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V113 male body	V114 embryo	V115 head
..................................................AAACTGTGCAGTAGACTAATCTC...............................................................................................	23	0	20	4.80	96	94	0	0	2
...............................................................................................AATTAGTCAGCGGTAGCAGTTG...................................................	22	0	4	1.50	6	4	0	2	0
..................................................AAACTGTGCAGTAGACTAATCTCATA............................................................................................	26	0	20	1.40	28	28	0	0	0
...............................................................................................AATTAGTCAGCGGTAGCAGTTGG..................................................	23	0	3	1.00	3	1	2	0	0
...............................................................................................AATTAGTCAGCGGTAGCAGTT....................................................	21	0	4	0.75	3	3	0	0	0
...................................................AACTGTGCAGTAGACTAATCTC...............................................................................................	22	0	20	0.65	13	13	0	0	0
..................................................AAACTGTGCAGTAGACTAATCTCAT.............................................................................................	25	0	20	0.35	7	7	0	0	0
..................................................AAACTGTGCAGTAGACTAATCT................................................................................................	22	0	20	0.35	7	7	0	0	0
..............................................................................................AAATTAGTCAGCGGTAGCAGTTG...................................................	23	0	4	0.25	1	1	0	0	0
...............................................................................................AATTAGTCAGCGGTAGCAGTCC...................................................	22	2	5	0.20	1	1	0	0	0
..............................................................................................................................TAGTCCAAACCGCTGCTCTCG.....................	21	0	7	0.14	1	0	1	0	0
.........................................................................................................................GCCCATAGTCCAAACCGCTGCTC........................	23	0	7	0.14	1	1	0	0	0
..................................................AAACTGTGCAGTAGACTAATCTCATACTT.........................................................................................	29	0	20	0.10	2	2	0	0	0
..................................................AAAATGTGCAGTAGACTCATCTCA..............................................................................................	24	2	20	0.05	1	1	0	0	0
.............................................................................TTGTTAATATTTAAGCCAAATTAGTCA................................................................	27	0	20	0.05	1	1	0	0	0
.............................TGTTGGGTCATGCAGCCGCC.......................................................................................................................	20	0	20	0.05	1	1	0	0	0
..................................................................................................................................................GCACGCATTTATCTGTACGGC.	21	0	20	0.05	1	1	0	0	0
................................................................................TTAATATTTAAGCCAAATTAG...................................................................	21	0	20	0.05	1	1	0	0	0
.........................................................................ATACTTGTTAATATTTAAGCCAA........................................................................	23	0	20	0.05	1	1	0	0	0
.TATATACACTCAAAGAAAATATAA...............................................................................................................................................	24	1	20	0.05	1	1	0	0	0
.....................................................................TCTCATACTTGTTAATATTTAAGCCA.........................................................................	26	0	20	0.05	1	1	0	0	0
.....................................................CTGTGCAGTAGACTAATCTCA..............................................................................................	21	0	20	0.05	1	1	0	0	0
............................................................................................................................................GCTCTCGCACGCATTTATCTGTACGGC.	27	0	20	0.05	1	1	0	0	0
.............................................................................TTGTTAATGTTTAAGCCAAATTAGTCAG...............................................................	28	1	20	0.05	1	1	0	0	0
.....................................................CTGTGCAGTAGACTAATCTC...............................................................................................	20	0	20	0.05	1	1	0	0	0
......................................................TGTGCAGTAGACTAATCTCATA............................................................................................	22	0	20	0.05	1	1	0	0	0
.......................................................GTGCAGTAGACTAATCTCATAC...........................................................................................	22	0	20	0.05	1	1	0	0	0
..................................................AAACTGTCCAGTAGACTAATCTCA..............................................................................................	24	1	20	0.05	1	1	0	0	0
.............................................................................TTGTTAATATTTAAGCCAAA.......................................................................	20	0	20	0.05	1	1	0	0	0

GATATATGTGAGTTTCTTTTATATACAGAACAACCCAGTACGTCGGCGGTTTTGACACGTCATCTGATTAGAGTATGAACAATTATAAATTCGGTTTAATCAGTCGCCATCGTCAACCCTACGGGTATCAGGTTTGGCGACGAGAGCGTGCGTAAATAGACATGCCGC **********************************........((..((..((((((((.((.(((((((......((((........))))....))))))).)).))).))))).))..)).........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V115 head	V113 male body
...........................................................................................................................................ACGAGAGCGTGCGTAAATAGACAT.....	24	0	20	0.60	12	10	0	0	2
....................................TGTACGTCGGCGGTTTTGACACGT............................................................................................................	24	1	20	0.40	8	8	0	0	0
.......................................ACGTCGGCGGTTTTGACACGT............................................................................................................	21	0	20	0.20	4	0	0	4	0
.............................................................................................................................................GAGAGCGTGCGTAAATAGACAT.....	22	0	20	0.15	3	3	0	0	0
............................................................CATCTGATTAGAGTATGAACAATTATA.................................................................................	27	0	20	0.15	3	0	3	0	0
.........................................................................................................................................TGACGAGAGCGTGCGTAAATAGACAT.....	26	1	20	0.15	3	0	3	0	0
...........................................................................................................CATCGTCAACCCTACGGGTATCAG.....................................	24	0	7	0.14	1	1	0	0	0
..........................................................................................................CCATCGTCAACCCTACGGGTATCAG.....................................	25	0	7	0.14	1	1	0	0	0
................................................................................................................ACAACCCTACGGGTATCAGGTTTGGCGA............................	28	1	7	0.14	1	0	1	0	0
..............................................................................................................CGTCAACCCTACGGGTATCAGGTT..................................	24	0	7	0.14	1	1	0	0	0
.........................................................................................................TCCATCGTCAACCCTACGGGTATCAG.....................................	26	1	7	0.14	1	1	0	0	0
..............................................................................ACAATTATAAATTCGGTTTAATCAGTC...............................................................	27	0	20	0.10	2	2	0	0	0
........................................................................................................................CCGGGTATCAGGTTTGTC..............................	18	2	10	0.10	1	1	0	0	0
..............................................................TCTGATTAGAGTATGAACAATTA...................................................................................	23	0	20	0.05	1	0	1	0	0
............................................................CATCTGATTAGAGTATGAACAAT.....................................................................................	23	0	20	0.05	1	1	0	0	0
.....................................................................................................................................TTGGCGACGAGAGCGTGCGTAAAT...........	24	0	20	0.05	1	1	0	0	0
..................................................TTTGACACGTCATCTGATTAG.................................................................................................	21	0	20	0.05	1	1	0	0	0
....................................................................................................................CCCAACGGGTAACAGGTTA.................................	19	3	20	0.05	1	1	0	0	0
...................................................................................................................................GTTTGGCGACGAGAGCGTG..................	19	0	20	0.05	1	1	0	0	0
.................................................................................ATTATAAATTCGTTTTAATCAGTC...............................................................	24	1	20	0.05	1	1	0	0	0
............................................................................................................................................CGAGAGCGTGCGTAAATAGACATG....	24	0	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_139:3072-3239 +	dse_258	CTATATAC-------ACTCAAAGAAAATATATGTC-TTGTTGGGTCATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCTCATACTTGTTAATATT-TAAGCCAAATTAGTCAGCGGTAGCAGTTGGGATGCCCATAGTCCAAACCGCTGCTCTCGCACGCATTTATCTGTACGGCG
droSim2	node_4916:1139-1301 -		CAACAAAC-------AAAAAAAAA---TTTAT----TTGTTGGGTGATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCACATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTATCAGTTGCGATGCCCATAGTGCAAACCGCTGTTCTCGCACGCATTTATCTGTACGGCG
dm3	chr2R:261831-262001 -		TTAAATTAC------ACTTATCTAGAATTAATGCCCGTGTTGAGTCATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCTCATACTTTTTAATATTGTAAGCCGAATTAGTCAGTGGTAGCAGTTGCGATGCCCACATTGCAAAATGCTGTTCTCGCACGCATTTATCTGTACGGCG
droEre2	scaffold_3090:6282-6308 +		CTGAAAAC-------AAAAAACTAAAACAAAATA------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chrUn_6871:1698-1857 -		TACAGTAA-------TTAAAAG-----CATAT----CTGTTGGGTCATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCTCATACT-CTTAATATTGTAAGCCGAAGTAGTCAGTGGTAGCAGTTGCGATGCCCATAGTGCAAACCGCTGTTCTCGCACGCATTTATCTGTACGGCG
droBia1	scf7180000302349:3300-3303 +		ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000452485:5272-5300 +		CAAAATTCGAACGATACTGAAATAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302724:420032-420053 -		TTAAATAC-------AATTAAATAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12911:1533593-1533730 +		AAAAAATAT------ACA---------------GA-TTGTTGGGCCAAGCAGCCACCAAAGATTGCATATAAAA-TAAT---------AATAATATTCTAAGCTGCAGCTGTTGTTATCAGCATGTTTCGTCTCTATTTTGT----CCCCAGTTTCGCATGCGCTTTAT----TGTTA
droBip1	scf7180000395927:10321-10334 -		CTTTTCAT-------GCCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_singleton_2002:231-237 +		GTATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12769:2056-2076 -		AAATGTAT-------AAGTAAAGAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6541:231052-231073 +		TAAAATAA-------AATAAAATAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CTATATAC-------ACTCAAAGAAAATATATGTC-TTGTTGGGTCATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCTCATACTTGTTAATATT-TAAGCCAAATTAGTCAGCGGTAGCAGTTGGGATGCCCATAGTCCAAACCGCTGCTCTCGCACGCATTTATCTGTACGGCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................AA-ACTGTGCAGTAGACTAATCTC................................................................................................	23	20	4.80	96	94	0	0	2
.........................................................................................................AATTAGTCAGCGGTAGCAGTTG...................................................	22	4	1.50	6	4	0	2	0
..........................................................AA-ACTGTGCAGTAGACTAATCTCATA.............................................................................................	26	20	1.40	28	28	0	0	0
.........................................................................................................AATTAGTCAGCGGTAGCAGTTGG..................................................	23	3	1.00	3	1	2	0	0
.........................................................................................................AATTAGTCAGCGGTAGCAGTT....................................................	21	4	0.75	3	3	0	0	0
...........................................................A-ACTGTGCAGTAGACTAATCTC................................................................................................	22	20	0.65	13	13	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCTCAT..............................................................................................	25	20	0.35	7	7	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCT.................................................................................................	22	20	0.35	7	7	0	0	0
........................................................................................................AAATTAGTCAGCGGTAGCAGTTG...................................................	23	4	0.25	1	1	0	0	0
.........................................................................................................AATTAGTCAGCGGTAGCAGTCC...................................................	22	5	0.20	1	1	0	0	0
........................................................................................................................................TAGTCCAAACCGCTGCTCTCG.....................	21	7	0.14	1	0	1	0	0
...................................................................................................................................GCCCATAGTCCAAACCGCTGCTC........................	23	7	0.14	1	1	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCTCATACTT..........................................................................................	29	20	0.10	2	2	0	0	0
......................................................................................TTGTTAATATT-TAAGCCAAATTAGTCA................................................................	27	20	0.05	1	1	0	0	0
.....................................TGTTGGGTCATGCAGCCGCC.........................................................................................................................	20	20	0.05	1	1	0	0	0
............................................................................................................................................................GCACGCATTTATCTGTACGGC.	21	20	0.05	1	1	0	0	0
.........................................................................................TTAATATT-TAAGCCAAATTAG...................................................................	21	20	0.05	1	1	0	0	0
..................................................................................ATACTTGTTAATATT-TAAGCCAA........................................................................	23	20	0.05	1	1	0	0	0
.TATATAC-------ACTCAAAGAAAATATAA..................................................................................................................................................	24	20	0.05	1	1	0	0	0
..............................................................................TCTCATACTTGTTAATATT-TAAGCCA.........................................................................	26	20	0.05	1	1	0	0	0
..............................................................CTGTGCAGTAGACTAATCTCA...............................................................................................	21	20	0.05	1	1	0	0	0
......................................................................................................................................................GCTCTCGCACGCATTTATCTGTACGGC.	27	20	0.05	1	1	0	0	0
..............................................................CTGTGCAGTAGACTAATCTC................................................................................................	20	20	0.05	1	1	0	0	0
...............................................................TGTGCAGTAGACTAATCTCATA.............................................................................................	22	20	0.05	1	1	0	0	0
................................................................GTGCAGTAGACTAATCTCATAC............................................................................................	22	20	0.05	1	1	0	0	0
......................................................................................TTGTTAATATT-TAAGCCAAA.......................................................................	20	20	0.05	1	1	0	0	0

droSim2

CAACAAAC-------AAAAAAAAA---TTTAT----TTGTTGGGTGATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCACATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTATCAGTTGCGATGCCCATAGTGCAAACCGCTGTTCTCGCACGCATTTATCTGTACGGCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................CAGTAGACTAATCACATATTCTTTAATA...................................................................................	28	14	23.29	326	0	1	98	1	0	13	53	30	80	48	2	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGC.............................................	25	12	22.92	275	0	0	4	19	80	0	0	0	0	0	164	7	1	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCAC................................................................................................	23	20	18.70	374	0	0	0	0	0	0	0	0	0	0	0	0	226	148	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACATA.............................................................................................	26	16	17.25	276	0	0	0	0	0	0	0	0	0	0	0	0	239	37	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCA.................................................................................................	22	20	15.10	302	0	0	0	0	0	0	0	0	0	0	0	0	0	302	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGCC............................................	26	12	7.08	85	0	0	0	22	0	0	0	0	0	0	57	6	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTG...................................................	19	13	6.69	87	0	0	0	0	84	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGAT...............................................	23	12	5.58	67	0	0	3	0	20	0	1	0	2	0	27	0	7	7	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATG..............................................	24	12	4.83	58	0	0	3	2	0	0	0	0	0	0	46	2	5	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAAT...................................................................................................	20	20	4.65	93	0	0	0	0	0	0	0	0	0	0	0	0	0	93	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGA................................................	22	13	4.23	55	0	0	0	1	42	0	2	0	0	0	4	0	6	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGCCC...........................................	27	12	4.17	50	0	0	0	3	0	0	0	0	0	0	44	3	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACA...............................................................................................	24	20	3.80	76	0	0	0	0	0	0	0	0	0	1	0	0	0	75	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCAA................................................................................................	23	20	3.75	75	0	0	0	0	0	0	0	0	0	0	0	0	75	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGCCCA..........................................	28	12	3.58	43	0	0	0	3	0	0	0	0	1	1	37	1	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGC..................................................	20	13	3.54	46	0	0	0	0	42	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACATAT............................................................................................	27	16	3.38	54	0	0	0	0	0	0	0	0	0	0	0	0	47	7	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACGCATT.............	26	20	3.35	67	0	0	0	0	66	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................TCAGTGGTATCAGTTGCGATGCCC...........................................	24	12	3.33	40	0	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CAAATTAGTCAGTGGTATCAG......................................................	21	14	3.00	42	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACAT..............................................................................................	25	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	40	16	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACAA..............................................................................................	25	20	2.65	53	0	0	0	0	0	0	0	0	0	0	0	0	53	0	0	0	0
...............................................................TGTGCAGTAGACTAATCACATATTCTT........................................................................................	27	15	2.47	37	0	0	0	0	0	0	0	0	0	0	0	0	34	3	0	0	0
..................................................................................................TAAGCCAAATTAGTCAGTGGTATCAGT.....................................................	27	13	2.08	27	0	0	0	0	0	0	3	3	5	11	5	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTT....................................................	18	14	2.07	29	0	0	0	0	21	0	0	0	0	0	8	0	0	0	0	0	0
....................................................................................................AGCCAAATTAGTCAGTGGTATCAGT.....................................................	25	13	1.92	25	0	0	0	0	20	0	1	0	1	0	3	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACT...............................................................................................	24	20	1.85	37	0	0	0	0	0	0	0	0	0	0	0	0	20	17	0	0	0
...............................................................................................................TCAGTGGTATCAGTTGCGATG..............................................	21	12	1.83	22	0	0	0	0	20	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................TATTATAAGCCAAATTAGTCAGTGG............................................................	25	20	1.80	36	0	0	0	0	0	0	10	16	4	6	0	0	0	0	0	0	0
.............................................................................................................AGTCAGTGGTATCAGTTGCGATG..............................................	23	12	1.67	20	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TAATATTATAAGCCAAATTAGTCAGTGG............................................................	28	20	1.50	30	0	0	0	0	0	0	11	11	7	1	0	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACG...............................................................................................	24	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTTAAT....................................................................................	27	14	1.21	17	0	0	0	0	0	0	2	1	5	5	4	0	0	0	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACGCAT..............	25	20	1.20	24	0	0	0	0	0	0	0	0	0	0	0	0	19	5	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTTA......................................................................................	25	15	1.13	17	0	0	0	0	14	0	2	0	1	0	0	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGT.....................................................	17	14	1.07	15	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATATTCTT........................................................................................	23	15	1.07	16	0	0	0	2	14	0	0	0	0	0	0	0	0	0	0	0	0
...............AAAAAAAAA---TTTAT----TTGTTGGGTGA...................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................AAAAAAA---TTTAT----TTGTTGGGTGAA..................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................TTGTTGGGTGATGCA...............................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCG.................................................	21	13	1.00	13	0	0	0	0	0	0	1	0	0	0	8	0	0	4	0	0	0
.....................................TGTTGGGTGATGCAGCCGCCAAA-.....................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................TGCCCATAGTGCAAACCGCTGTTCT.......................	25	20	0.95	19	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTATAAGCCAAATTAGTCAGTGGTA..........................................................	25	20	0.80	16	0	0	0	0	0	0	2	5	1	8	0	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACA...............................................................................................	16	20	0.75	15	0	0	0	0	0	0	0	1	1	0	13	0	0	0	0	0	0
........................................................CAAA-ACTGTGCAGTAGACTAATCACA...............................................................................................	26	20	0.75	15	0	0	0	0	0	0	3	1	0	1	0	0	9	1	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTTAATAT..................................................................................	29	14	0.71	10	0	0	0	2	0	0	2	4	1	1	0	0	0	0	0	0	0
..................................................................................................TAAGCCAAATTAGTCAGTGGTA..........................................................	22	20	0.70	14	0	0	0	0	0	0	1	1	0	11	1	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACATAA............................................................................................	27	16	0.69	11	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGCACGCAT..............	28	20	0.65	13	0	0	0	1	0	0	0	0	0	0	0	0	12	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACAC..............................................................................................	25	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	7	6	0	0	0
.............................................................................................TATTATAAGCCAAATTAGTCAGTGGTA..........................................................	27	20	0.65	13	0	0	0	0	0	0	4	0	3	6	0	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTTAA.....................................................................................	26	14	0.64	9	0	0	0	0	0	0	2	2	2	3	0	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACATATT...........................................................................................	28	16	0.63	10	0	0	0	0	0	0	0	0	0	0	0	0	9	1	0	0	0
...............................................................TGTGCAGTAGACTAATCACATATT...........................................................................................	24	18	0.61	11	0	0	0	0	0	0	0	0	0	0	0	0	9	2	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACTA..............................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	5	7	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGCACGC................	26	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0
........................................................CAAA-ACTGTGCAGTAGACTAATCAC................................................................................................	25	20	0.55	11	0	0	0	0	0	0	0	0	1	1	0	0	9	0	0	0	0
................................................................................................................................GATGCCCATAGTGCAAACCGCTGTTCT.......................	27	20	0.55	11	0	0	0	0	0	0	0	0	9	0	2	0	0	0	0	0	0
...............................................................TGTGCAGTAGACTAATCACATAT............................................................................................	23	18	0.50	9	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACATATTC..........................................................................................	29	13	0.46	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
..........................................................................................TAATATTATAAGCCAAATTAGTCAGT..............................................................	26	20	0.45	9	0	0	0	0	0	0	3	1	2	1	2	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATAT............................................................................................	19	18	0.39	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.....................................................CGCCAAA-ACTGTGCAGTAGACTAATCACA...............................................................................................	29	19	0.37	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
...............................................................................................TTATAAGCCAAATTAGTCAGTGG............................................................	23	20	0.35	7	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGCACGCATT.............	29	20	0.35	7	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CGCCAAA-ACTGTGCAGTAGACTA.....................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
.............................................................................................................AGTCAGTGGTATCAGTTGCGATGC.............................................	24	12	0.33	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TGTGCAGTAGACTAATCACATATTCT.........................................................................................	26	15	0.33	5	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0
....................................................................................................................GGTATCAGTTGCGATG..............................................	16	12	0.33	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................................................TCAGTTGCGATGCCCATAGTGCAAA.................................	25	12	0.33	4	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0
.............................................................................................................AGTCAGTGGTATCAGTTGCGATGCC............................................	25	12	0.33	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TGCCCATAGTGCAAACCGCTGTT.........................	23	20	0.30	6	0	0	0	0	0	0	1	0	2	3	0	0	0	0	0	0	0
...............................................TGCAGCCGCCAAA-ACTGTG...............................................................................................................	19	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACG.................	22	20	0.30	6	0	0	0	0	0	0	3	0	0	0	3	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATA.............................................................................................	18	18	0.28	5	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0
........................................................................................................................TCAGTTGCGATGCCCATAGTGCAAAC................................	26	11	0.27	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................ATCAGTTGCGATGCCCATAGTGCAAAC................................	27	11	0.27	3	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0
................................................................................................TATAAGCCAAATTAGTCAGTGGTA..........................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGT.............................................	25	12	0.25	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
................................................................................................TATAAGCCAAATTAGTCAGTGGTATCAGT.....................................................	29	12	0.25	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...........................................................A-ACTGTGCAGTAGACTAATCACA...............................................................................................	23	20	0.25	5	0	0	0	0	0	0	3	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................TGCCCATAGTGCAAACCGCTGTTCTCGC....................	28	20	0.25	5	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0
...........................................................................................................TTAGTCAGTGGTATCAGTTGCGATGC.............................................	26	12	0.25	3	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGCCT...........................................	27	13	0.23	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................TAAGCCAAATTAGTCAGTGGTATCAGTT....................................................	28	13	0.23	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.....................................................CGCCAAA-ACTGTGCAGTAGACTAATCAC................................................................................................	28	19	0.21	4	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0
.....................................................CGCCAAA-ACTGTGCAGTAGACTAATC..................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................CATAGTGCAAACCGCTGTTCTCGCA...................	25	20	0.20	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGC....................	22	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACGCA...............	24	20	0.20	4	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0
.................................................................TGCAGTAGACTAATCACATATTCTT........................................................................................	25	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGCACGT................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCAAT...............................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
........................................................................................................................................................TCTCGCACGCATTTATCTGTACGGC.	25	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
...........................................................A-ACTGTGCAGTAGACTAATCACAT..............................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACGA..............................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
..................................................................................................TAAGCCAAATTAGTCAGT..............................................................	18	20	0.20	4	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0
.............................................................................................TATTATAAGCCAAATTAGTCAGTGGT...........................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGCA...................	23	20	0.20	4	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................TGTGCAGTAGACTAATCACATATTC..........................................................................................	25	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................TCAGTTGCGATGCCCATAGTGCAAACC...............................	27	11	0.18	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
..................................................................................................................GTGGTATCAGTTGCGATG..............................................	18	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................TTAGTCAGTGGTATCAGTTGCGATGCC............................................	27	12	0.17	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATA..............................................	24	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.................................................................................................................AGTGGTATCAGTTGCGATG..............................................	19	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................TTATAAGCCAAATTAGTCAGTGGTATCAGT.....................................................	30	12	0.17	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGCCA...........................................	27	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................CAGTGGTATCAGTTGCGATGC.............................................	21	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGA.............................................	25	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACGCATA.............	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
....................................................................................................................................................CTGTTCTCGCACGCA...............	15	20	0.15	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
...................................................................................................AAGCCAAATTAGTCAGT..............................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................CGCCAAA-ACTGTGCAGTAGACTAATCA.................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
...................................................................CAGTAGACTAATCAC................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0
.....................................................CGCCAAA-ACTGTGCAGTAGACT......................................................................................................	22	20	0.15	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
........................................................CAAA-ACTGTGCAGTAGACTAAT...................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACAAC.............................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCG.....................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACGC................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.....................................................................................................................................................TGTTCTCGCACGCATTTATCTGTACGGC.	28	20	0.15	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCACTC..............................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.............................................................................................................................TGCGATGCCCATAGTGCAAACCGC.............................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTTAAA....................................................................................	27	14	0.14	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................AAATTAGTCAGTGGTATCAGT.....................................................	21	14	0.14	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................AGTAGACTAATCACATATTCTTTAATA...................................................................................	27	14	0.14	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
........................................................................................................AAATTAGTCAGTGGTATC........................................................	18	14	0.14	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................ACTGTGCAGTAGACTAATCACATATT...........................................................................................	26	16	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...............................................................TGTGCAGTAGACTAATCACATA.............................................................................................	22	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.................................................................TGCAGTAGACTAATCACATATAA..........................................................................................	23	19	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................AGTGCAAACCGCTGTTCTCGCACGCA...............	26	20	0.10	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
...........................................................A-ACTGTGCAGTAGACTAATCAC................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................TAATATTATAAGCCAAATTAGTCAG...............................................................	25	20	0.10	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
...............................................................................................TTATAAGCCAAATTAGTCAGTGGT...........................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
........................................................CAAA-ACTGTGCAGTAGACTAATC..................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................CATAGTGCAAACCGCTGTTCTCGCAC..................	26	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................CCAAA-ACTGTGCAGTAGACTTT....................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................TTAATATTATAAGCCAAATTAGTCAGT..............................................................	27	20	0.10	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
............................................................................................ATATTATAAGCCAAATTAGTCAGTGGTA..........................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................ATATTATAAGCCAAATTAGTCAGTGG............................................................	26	20	0.10	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.......................................................CCAAA-ACTGTGCAGTAGACTAATCACA...............................................................................................	27	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................CGATGCCCATAGTGCAAACCG..............................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................AATATTATAAGCCAAATTAGTCAGTGG............................................................	27	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TAGTGCAAACCGCTGTTCTCGCACGCA...............	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
......................................................GCCAAA-ACTGTGCAGTAGACTAATCA.................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................AGCCGCCAAA-ACTGTGCAGTAGACTAAT...................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................TGCAAACCGCTGTTCTCGCACGCAA..............	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................AGTTGCGATGCCCATAGT......................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................GATGCCCATAGTGCAAACCGCTGTTC........................	26	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGCGATGCCCATAGT......................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................AGCCAAATTAGTCAGT..............................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................TCAGTTGCGATGCCCATAGTGCAAACCT..............................	28	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................ATTAGTCAGTGGTATCAGTTGCGAT...............................................	25	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................CAGTGGTATCAGTTGCGAT...............................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATT..............................................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................GTATCAGTTGCGATGCCCA..........................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................GTATCAGTTGCGATG..............................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................ATCAGTTGCGATGCCCATAGT......................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................CAGTGGTATCAGTTGCGATG..............................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................TATCAGTTGCGATGCCCATAGTGCAAA.................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................AGTGGTATCAGTTGCGATGCC............................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................GTGGTATCAGTTGCGAT...............................................	17	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................TTAGTCAGTGGTATCAGTTGCGATG..............................................	25	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................ATTAGTCAGTGGTATCAGTTGCGATG..............................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGCAA...........................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................AGCCAAATTAGTCAGTGGTATCAGTTGCGA................................................	30	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGAT............................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................ATCAGTTGCGATGCCC...........................................	16	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................ATCAGTTGCGATGCCCATAGTGCAAAA................................	27	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................TATAAGCCAAATTAGTCAGTGGTATC........................................................	26	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GTATCAGTTGCGATGC.............................................	16	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGATGGT............................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................TCAGTTGCGATGCCCA..........................................	16	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................TGGTATCAGTTGCGATGC.............................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................GTGGTATCAGTTGCGATGC.............................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................AGCCAAATTAGTCAGTGGTATCAGA.....................................................	25	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GTGGTATCAGTTGCG.................................................	15	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TAAGCCAAATTAGTCAGTGGTATCA.......................................................	25	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................AGCCAAATTAGTCAGTGGTATCAAA.....................................................	25	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................AGCCAAATTAGTCAGTGGTATCAGTA....................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGA..................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TAAGCCAAATTAGTCAGTGGTATCAGA.....................................................	27	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAGTTGCGG................................................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................TAGTCAGTGGTATCAG......................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................AAATTAGTCAGTGGTATCA.......................................................	19	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................AATTAGTCAGTGGTATCAGT.....................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTTAATATGTG...............................................................................	32	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................TAGTCAGTGGTATCA.......................................................	15	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................CTGTGCAGTAGACTAATCACATATTC..........................................................................................	26	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................CTAATCACATATTCTT........................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................CAGTAGACTAATCACATATTC..........................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................TGTGCAGTAGACTAATCACATATTCTTT.......................................................................................	28	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................CAGTAGACTAATCACATATTCTTT.......................................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

dm3

TTAAATTAC------ACTTATCTAGAATTAATGCCCGTGTTGAGTCATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCTCATACTTTTTAATATTGTAAGCCGAATTAGTCAGTGGTAGCAGTTGCGATGCCCACATTGCAAAATGCTGTTCTCGCACGCATTTATCTGTACGGCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................TATTGTAAGCCGAATTAGTCAGTGG............................................................	25	7	125.86	881	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	6	1	0	0	14	1	6	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	2	10	0	0	0	0	9	1	2	5	16	8	3	3	1	6	2	1	27	28	15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	4	5	21	0	2	0	1	1	2	15	0	0	0	0	0	6	9	0	0	2	0	0	0	0	0	0	3	0	1	3	35	1	59	9	23	19	26	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	1	0	1	0	0	2	78	1	33	0	0	0	0	0	0	211	7	24	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	31	15	11	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAGT..............................................................	23	9	117.89	1061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	8	0	2	1	1	0	1	3	3	0	4	0	3	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	1	4	8	23	20	2	4	4	6	9	0	14	27	26	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	10	1	19	0	10	1	2	0	1	23	0	2	2	0	4	4	16	0	0	0	0	0	0	0	0	0	4	1	9	6	49	0	156	24	64	30	66	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	3	0	0	8	34	12	44	0	0	0	0	0	0	93	61	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	4	7	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAGTGGT...........................................................	26	6	28.33	170	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	2	0	0	3	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	22	0	24	7	13	11	14	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	3	12	3	6	0	0	0	0	0	0	8	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAGTGGTA..........................................................	27	6	23.00	138	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	2	4	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0	0	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	2	0	0	0	16	0	14	5	9	5	13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	3	0	0	0	0	0	0	25	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAGTG.............................................................	24	9	22.44	202	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	19	0	2	3	2	2	0	3	12	6	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	0	0	0	0	0	3	1	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	1	0	0	3	3	0	18	16	3	2	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	4	5	2	2	0	0	0	0	0	0	32	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAG...............................................................	22	9	8.67	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	2	0	0	1	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	2	0	3	0	0	5	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	4	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	11	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGTTCTCGCACGCATTTATCTGTACGGC.	28	20	4.75	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................TAATATTGTAAGCCGAATTAGTC.................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTAATATTGTAAGCCGAATTAGTCAGTG.............................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAGTTT............................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTAATATTGTAAGCCGAATTAGTCA................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TATTGTAAGCCGAATTAGTCAGC..............................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TTGTAAGCCGAATTAGTCAGTG.............................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TGTAAGCCGAATTAGTCAGT..............................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ATATTGTAAGCCGAATTAGTCAG...............................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTGAAAAC-------AAAAAACTAAAACAAAATA------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TACAGTAA-------TTAAAAG-----CATAT----CTGTTGGGTCATGCAGCCGCCAAA-ACTGTGCAGTAGACTAATCTCATACT-CTTAATATTGTAAGCCGAAGTAGTCAGTGGTAGCAGTTGCGATGCCCATAGTGCAAACCGCTGTTCTCGCACGCATTTATCTGTACGGCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................AA-ACTGTGCAGTAGACTAATCTCATAC............................................................................................	27	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
................................................................................................TGTAAGCCGAAGTAGTCAGTGGTA..........................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..........................................................AA-ACTGTGCAGTAGACTAATCTCATA.............................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
....................................CTGTTGGGTCATGCAGCCGCCAAA-AC...................................................................................................................	26	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................CCATAGTGCAAACCGCTGTTCTCGCA...................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TGCCCATAGTGCAAACCGCTGTTC........................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TCAGTGGTAGCAGTTGCGA................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CCATAGTGCAAACCGCTGTTCTCGCACG.................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................TAGACTAATCTCATACT-CTTAATATTG................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGTTCTCGCACGCATTTATCTGTACG...	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droBia1

ATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAAATTCGAACGATACTGAAATAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTAAATAC-------AATTAAATAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAAAAATAT------ACA---------------GA-TTGTTGGGCCAAGCAGCCACCAAAGATTGCATATAAAA-TAAT---------AATAATATTCTAAGCTGCAGCTGTTGTTATCAGCATGTTTCGTCTCTATTTTGT----CCCCAGTTTCGCATGCGCTTTAT----TGTTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................TGTTATCAGCATGTTTCGTCTCTATT........................................	26	20	0.10	2	1	1	0	0	0	0
...................................................................................................AAGCTGCAGCTGTTGTTATCA..........................................................	21	20	0.10	2	2	0	0	0	0	0
.............................................................................................................TGTTGTTATCAGCATGTTTCGTCTC............................................	25	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................TTTGT----CCCCAGTTTCGCATGCGCTT............	25	20	0.05	1	1	0	0	0	0	0
...........................................................................................................GCTGTTGTTATCAGCATGTTTCGT...............................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................TTTTGT----CCCCAGTTTCGCATGCGCTT............	26	20	0.05	1	0	1	0	0	0	0
....................................................CCACCAAAGATTGCATATAAAA-TAA....................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................TCAGCATGTTTCGTCTCTATTTTGT----CC..............................	27	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................TGT----CCCCAGTTTCGCATGCGCTTTAT----T....	27	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................TCAGCATGTTTCGTCTCTATTTTGT----C...............................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................................................GTTATCAGCATGTTTCGTCTCTAT.........................................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................AATAATATTCTAAGCTGCAGCTGTTG................................................................	26	20	0.05	1	1	0	0	0	0	0
...................................................................................................AAGCTGCAGCTGTTGTTAT............................................................	19	20	0.05	1	0	0	0	0	0	1
.............................................................................................TATTCTAAGCTGCAGCTGTTGTTATC...........................................................	26	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................TATTTTGT----CCCCAGTTTCGCATGCGC..............	26	20	0.05	1	0	1	0	0	0	0

droBip1

CTTTTCAT-------GCCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droVir3

AAATGTAT-------AAGTAAAGAAAAT------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

TAAAATAA-------AATAAAATAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

dse_258

scaffold_139:3122-3189 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.5	-19.4	-19.3