dse_243

Name	Class	Family	Strand
DIVER2_LTR	LTR	Pao	-

TTGGGTCATGCAGCCGCACGATATCTCATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTAGCAGTTACGATGCCCATAGTGCAAACCGCTGCTCTCGCAAGCATTTATCTGTACGGCGCTCATTCCTTGTTTGTTGTTGTTAGCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT *********************************....................((..((((.((((((.....(((.......)))....)))))).))))..))..........****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V115 head	V113 male body
..................................................AATTAGTCAGTGGTAGCAGTTACGA............................................................................................................	25	0	4	4.50	18	11	6	1	0
.............................................................................................................................................TTGTTAGCTACCTACGTTAAGCT...................	23	0	20	2.30	46	46	0	0	0
..................................................AATTAGTCAGTGGTAGCAGTTACG.............................................................................................................	24	0	5	1.00	5	2	1	1	1
.....................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGC.........	25	0	20	0.30	6	6	0	0	0
........TGCAGCCGCACGATATCTCATATTCT.....................................................................................................................................................	26	0	4	0.25	1	1	0	0	0
.................................................AAATTAGTCAGTGGTAGCAGTTACGA............................................................................................................	26	0	4	0.25	1	1	0	0	0
........TGCAGCCGCACGATATCTCATATTCTT....................................................................................................................................................	27	0	4	0.25	1	1	0	0	0
..................................................AATTAGTCAGTGGTAGCAGTTA...............................................................................................................	22	0	5	0.20	1	1	0	0	0
..................................................ATTTAGTCAGTGGTAGCAGTTACGA............................................................................................................	25	1	5	0.20	1	0	1	0	0
..................................................AATTAGTCAGTGGTAGCAGTGACGA............................................................................................................	25	1	5	0.20	1	1	0	0	0
..................................................AATTAGTCAGCGGTAGCAGTTAC..............................................................................................................	23	1	6	0.17	1	1	0	0	0
..................................................AATTAGTCAGTGGTAGCAGTTATT.............................................................................................................	24	2	6	0.17	1	0	1	0	0
............................................................................GCCCATAGTGCAAACCGCTGCTCTCGT................................................................................	27	1	20	0.10	2	2	0	0	0
.................................................................................TAGTGCAAACCGCTGCTCTCG.................................................................................	21	0	20	0.05	1	1	0	0	0
..............................TTCATTAATATTATTAGCCAGA...................................................................................................................................	22	3	20	0.05	1	0	1	0	0
.............................................................................................................................................TTGTTAGCTACCTACGTTAAGCTCG.................	25	1	20	0.05	1	1	0	0	0
........................................................................................................................GCGCTCATTCCTTGTTTGTTG..........................................	21	0	20	0.05	1	1	0	0	0
.....................................................................................................................................................TACCTACGTTAAGCTTGGGCGCT...........	23	0	20	0.05	1	1	0	0	0
..........................................ATAAGCCAAATTAGTCAGTGGTAGCAGT.................................................................................................................	28	0	20	0.05	1	1	0	0	0
...........................................................................TGCCTATAGTGCAAACCGCTGCTCTCG.................................................................................	27	1	20	0.05	1	0	1	0	0
...........................................TAAGCCAAATTAGTCAGTGGTAGCAGT.................................................................................................................	27	0	20	0.05	1	0	1	0	0
.....................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGCATTT.....	29	0	20	0.05	1	1	0	0	0
..............................................................................................TGTTCTCGCAAGCATTTATCTGTACGG..............................................................	27	1	20	0.05	1	1	0	0	0
..........................................................................................................................................................ACGTTAAGCTTGGGCGCTGC.........	20	0	20	0.05	1	0	0	1	0

AACCCAGTACGTCGGCGTGCTATAGAGTATAAGAAATTATAATATTCGGTTTAATCAGTCACCATCGTCAATGCTACGGGTATCACGTTTGGCGACGAGAGCGTTCGTAAATAGACATGCCGCGAGTAAGGAACAAACAACAACAATCGATGGATGCAATTCGAACCCGCGACGTAAAGCCGA ****************************************************************....................((..((((.((((((.....(((.......)))....)))))).))))..))..........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V115 head	V114 embryo	V113 male body
............................................................................................CGACGAGAGCGTTCGTAAATAGACAT.................................................................	26	0	4	0.50	2	0	1	1	0
.............................................................................................................................GTAAGGAACAAACAACAACAATCGAT................................	26	0	20	0.35	7	0	6	0	1
............................................................................................................................AGTAAGGAACAAACAACAACAATCGAT................................	27	0	20	0.35	7	7	0	0	0
...........................................................CACCATCGTCAATGCTACGGGTATCAC.................................................................................................	27	0	3	0.33	1	1	0	0	0
............CGGCGTGCTATAGAGTATAAGAAAT..................................................................................................................................................	25	0	4	0.25	1	0	0	1	0
.................................................................................................................................GGAACAAACAACAACAATCGAT................................	22	0	20	0.25	5	5	0	0	0
............................................................................................TGACGAGAGCGTTCGTAAATAGACAT.................................................................	26	1	4	0.25	1	0	1	0	0
..........................................................................................TGCGACGAGAGCGTTCGTAAATAGACAT.................................................................	28	1	6	0.17	1	0	0	0	1
.............................................................................................................................GTAAGGAACAAACAACAACAATCGA.................................	25	0	20	0.15	3	3	0	0	0
...................................ATTATAATATTCGGTTTAATCAGTC...........................................................................................................................	25	0	20	0.15	3	3	0	0	0
............................................................................................CGACTAGAGCGTTCGTAAATAGACAT.................................................................	26	1	7	0.14	1	1	0	0	0
...............................................................................................................................AAGGAACAAACAACAACAATCGAT................................	24	0	20	0.10	2	0	2	0	0
...........................................................................................................................GAGTAAGGAACAAACAACAACAATCGAT................................	28	0	20	0.10	2	0	1	1	0
..................................AATTATAATATTCGGTTTAATCAGTC...........................................................................................................................	26	0	20	0.10	2	2	0	0	0
.....................................TATAATATTCGGTTTAATCAGTC...........................................................................................................................	23	0	20	0.10	2	2	0	0	0
.............................................................................................................................GTAAGGAACAAACAACAACAAT....................................	22	0	20	0.05	1	1	0	0	0
.......................................................................................................................................................GGATGCAATTCGAACCCGCGACGTAA......	26	0	20	0.05	1	0	1	0	0
.......................................................................TTCCACGCGTATCACGTTT.............................................................................................	19	3	20	0.05	1	1	0	0	0
.............................................................................................................................GTAAGGAACAAACAACAATAATCGAT................................	26	1	20	0.05	1	0	0	1	0
........................................................................GCTACGGGTATCACGTTTGGCGAC.......................................................................................	24	0	20	0.05	1	0	1	0	0
.............................................................................................................................GTAAGGAACAAACAACAACAATCGATC...............................	27	1	20	0.05	1	1	0	0	0
........................................................................GCTACGGGTATCACGTTTGGCGA........................................................................................	23	0	20	0.05	1	0	0	0	1
.............................................................................................................................GTAAGGAACAAACAACAACAGTCGAT................................	26	1	20	0.05	1	0	0	1	0
................................GAAATTATAATATTCGGTTTAATCAGT............................................................................................................................	27	0	20	0.05	1	1	0	0	0
............................................................................CGGGTATCACGTTTGGCGACGAGAGC.................................................................................	26	0	20	0.05	1	0	0	1	0
............................................................................................CGACAAGAGCGTTCGTAAATAGACAT.................................................................	26	1	20	0.05	1	0	0	1	0
..............................................................................................................................TAAGGAACAAACAACAACAATCGAT................................	25	0	20	0.05	1	0	0	1	0
.......................................................................................................................................................GGATGCAATTCGAACCCGCGACGT........	24	0	20	0.05	1	1	0	0	0
.......................................................................................................................................................GGATGCAATTCGAACCCG..............	18	0	20	0.05	1	0	0	1	0
...............................................................................................................................AAGGAACAAATAACAACAATCGAT................................	24	1	20	0.05	1	1	0	0	0
...........................................................................................................................GAGTAAGGAACAAACAACAACAACAGAT................................	28	2	20	0.05	1	0	0	1	0
............................................................................................................................AGTAAGGAACAAACAACAACAATCGA.................................	26	0	20	0.05	1	1	0	0	0
.............................................................................................................................GTAAGGAACAAACAACAACAATCTAT................................	26	1	20	0.05	1	0	0	1	0
.........................................................................CTACGGGTATCACGTTTGGCGA........................................................................................	22	0	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_137:52074-52256 -	dse_243	TTGG-GTCATGCAGCCGCACGA--TATC---------------TCATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTAGCAGTTACGATGCCCATAGTGCAA-ACCGCTGCTCTCGCAAGC----------ATTTATCTGTACGGCGCTCATTCCTTGTTTGTTGTTGTTAGCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT
droSim2	2r:16103-16285 -		TTGG-GTCATGCAGCCGCATGA--TATC---------------TCATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTAGCAGTTGCGCTGCCCATAGTGCAA-ACCGCTGCTCTCGCACGC----------ATTTATCTGTACGGCGCTCATTCCTTGTTTGTTGTTGTTAGCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT
dm3	chr2RHet:602143-602326 -		TTGG-GTCATGCAGCCGCTAAA--AC-TGT------------GCAGTACTCTTTAATATTGTAAGCCGAAGTAGTCAGTGGTAGCAGTTGCGATGCCCATAGTGCAA-ACCGCTGTTCTCGCACGC----------ATTTATCTGTACGGCGCTCATTCCTTGTTC-TTTTTGTTATCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT
droEre2	scaffold_4463:608-610 -		TCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chrUn_6748:150-329 +		TTGT-GTCATGCAGCCGCCTAA--TC-----------------TCATACTCT-TAATATTGTAAGCCGAAGTAGTCAGTGGTAGCAGTTGCGATGCCCATAGTGCAAAACCGCTGTTCTCGCTCGC----------ATTTATCTGTACGGCGCGCATTCCTTGTTC-TCTTTGTTATCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT
droEug1	scf7180000409876:21258-21274 -		TTGG-TACATCCAGACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301478:47979-47980 +		CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000410757:21127-21261 +		TCGG-GTCACGCAGCCGCAGCAGCTA---ATTAGCTTGTAAATCCGTACTCTTATATCAATTGCATCACGAAAG--------------------------------------------------GCATCTCTCTCTATTTATCT------C------------TCC-CATTTGTTGTATGCTTGCATT---TTTGGGCCCAGCAT-TCGGCT
droEle1	scf7180000488965:2780-2804 +		TGAC-TTTGTGCAGCCCGACAC--TATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000773915:13477-13521 -		GTAG----------CCACAATT--AATT---------------TTGTACCTTTAGATTTTGTACAACCAGAT--------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453567:13984-14001 -		TCGA-GTCATCCAGCCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000297692:840-852 +		TTGA-GTCGTGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12084:4060-4082 +		TTGG-GCTAAGCAGCCACCAGA--TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000393102:5814-5815 +		CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	4_group2:1022623-1022630 -		TCGA-GACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_174:97211-97279 -		GTCG-CTCATGCAACATCTTGG--TATT---------------GTATAGTCTTTGGTATTATGTATCAAAATAAAAAACTGTAGTGG-----------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000005086:1289-1333 -		GTTG-TTCTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTACGTTAAGCATACGCGATGTATGTTGGCC
droMoj3	scaffold_6468:19338-19346 -		TTGG-GTCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_4229:4935-4945 -		TTGCTGTCATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

TTGG-GTCATGCAGCCGCACGA--TATC---------------TCATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTAGCAGTTACGATGCCCATAGTGCAA-ACCGCTGCTCTCGCAAGC----------ATTTATCTGTACGGCGCTCATTCCTTGTTTGTTGTTGTTAGCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................AATTAGTCAGTGGTAGCAGTTACGA.......................................................................................................................	25	4	4.50	18	11	0	6	1
..........................................................................................................................................................................TTGTTAGCTACCTACGTTAAGCT...................	23	20	2.30	46	46	0	0	0
....................................................................AATTAGTCAGTGGTAGCAGTTACG........................................................................................................................	24	5	1.00	5	2	1	1	1
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGC.........	25	20	0.30	6	6	0	0	0
.........TGCAGCCGCACGA--TATC---------------TCATATTCT................................................................................................................................................................	26	4	0.25	1	1	0	0	0
...................................................................AAATTAGTCAGTGGTAGCAGTTACGA.......................................................................................................................	26	4	0.25	1	1	0	0	0
.........TGCAGCCGCACGA--TATC---------------TCATATTCTT...............................................................................................................................................................	27	4	0.25	1	1	0	0	0
....................................................................AATTAGTCAGTGGTAGCAGTTA..........................................................................................................................	22	5	0.20	1	1	0	0	0
....................................................................AATTAGTCAGTGGTAGCAGTTATT........................................................................................................................	24	6	0.17	1	0	0	1	0
..............................................................................................GCCCATAGTGCAA-ACCGCTGCTCTCGT..........................................................................................	27	20	0.10	2	2	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCG...........................................................................................	21	20	0.05	1	1	0	0	0
.....................................................................................................................................................GCGCTCATTCCTTGTTTGTTG..........................................	21	20	0.05	1	1	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCT...........	23	20	0.05	1	1	0	0	0
............................................................ATAAGCCAAATTAGTCAGTGGTAGCAGT............................................................................................................................	28	20	0.05	1	1	0	0	0
.............................................................TAAGCCAAATTAGTCAGTGGTAGCAGT............................................................................................................................	27	20	0.05	1	0	0	1	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGCATTT.....	29	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................ACGTTAAGCTTGGGCGCTGC.........	20	20	0.05	1	0	0	0	1

droSim2

TTGG-GTCATGCAGCCGCATGA--TATC---------------TCATATTCTTTAATATTATAAGCCAAATTAGTCAGTGGTAGCAGTTGCGCTGCCCATAGTGCAA-ACCGCTGCTCTCGCACGC----------ATTTATCTGTACGGCGCTCATTCCTTGTTTGTTGTTGTTAGCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTT...............................................	27	20	180.35	3607	0	0	0	0	0	0	0	3607	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCT...................................................	23	20	66.80	1336	0	0	0	0	0	0	0	820	0	480	36	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTG.....................................................................................................................	24	1	44.00	44	0	0	1	0	0	0	0	0	0	0	41	2	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGT................................................	26	20	42.90	858	0	0	0	0	0	0	0	636	0	0	0	0	0	222	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTT..................................................	24	20	35.85	717	0	0	0	0	0	0	0	0	717	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCATT......	24	20	18.90	378	0	0	0	0	0	0	0	273	0	0	0	0	105	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCACGC----------ATT.........................................................................	26	20	13.10	262	0	0	0	0	256	0	0	0	4	0	0	0	2	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGC.......................................................................................................................	22	1	12.00	12	0	0	0	0	3	0	0	0	0	0	2	0	4	3	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCG........................................................................................................................	21	20	11.60	232	0	0	0	0	141	0	1	0	0	0	18	0	27	45	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGC.........	25	20	9.25	185	0	0	0	0	0	0	0	0	0	3	182	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCT......................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	1	0	5	0	3	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGC----------A...........................................................................	27	20	8.30	166	0	0	0	0	0	0	0	0	156	10	0	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTTGTT...............................................	26	20	7.90	158	0	0	0	158	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGCTTGGGCGCTGCATTTCGGC.	24	20	7.70	154	0	0	6	3	0	0	0	0	129	0	0	0	16	0	0	0	0
...................................................................................................................................................CGGCGCTCATTCCTTGTTTGT............................................	21	20	7.45	149	0	0	0	0	149	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGC.........................................................................................................................	20	20	7.25	145	0	0	0	1	141	0	0	0	0	0	0	0	3	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTGC....................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTTT..............................................	28	20	6.70	134	0	0	0	0	0	0	0	0	0	0	0	0	134	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCACGC----------............................................................................	23	20	6.55	131	0	0	0	0	130	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................AGTGCAA-ACCGCTGCTCTCGCACGC----------A...........................................................................	26	20	6.45	129	0	0	0	0	0	0	55	4	68	0	1	0	0	1	0	0	0
...................................................................................................................CTCTCGCACGC----------ATTTATCT....................................................................	19	20	6.00	120	0	0	0	0	120	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGA................................................	26	20	5.55	111	0	0	0	0	0	0	0	0	44	0	0	0	0	67	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTTA..............................................	28	20	4.55	91	0	0	0	0	0	0	0	0	34	0	0	0	57	0	0	0	0
.................................................................................................................TGCTCTCGCACGC----------ATTTATCTGTACGGC.............................................................	28	20	3.95	79	0	0	0	1	0	0	18	25	18	16	1	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTT..................................................	23	20	3.55	71	0	0	0	0	0	0	0	0	0	0	71	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGT............................................................................................................................	17	20	3.40	68	0	0	0	0	0	0	0	0	0	0	68	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTTTG.............................................	29	20	3.35	67	0	0	0	0	0	0	0	63	0	4	0	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGC----------............................................................................	26	20	3.25	65	0	0	0	0	0	0	9	0	13	0	0	0	43	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTA.................................................	25	20	3.15	63	0	0	0	0	0	0	30	19	14	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCAT.......	23	20	3.10	62	0	0	0	0	0	0	0	0	0	60	0	0	0	0	0	2	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCT...................................................	22	20	2.55	51	0	0	0	0	0	0	0	0	0	0	51	0	0	0	0	0	0
TTGG-GTCATGCAGCCGCA.................................................................................................................................................................................................	18	11	2.36	26	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTGTTAGCTACCTACGTTAA......................	20	20	2.35	47	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGCTCTCGCACGC----------ATTTATCTGTACGG..............................................................	27	20	2.20	44	0	0	0	1	0	0	6	7	15	15	0	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGC----------ATT.........................................................................	29	20	2.20	44	0	0	0	40	0	0	2	0	1	0	0	1	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGC----------AT..........................................................................	28	20	2.15	43	0	0	0	4	0	0	0	0	0	0	0	0	37	2	0	0	0
...................................................................................................................................................................................ACCTACGTTAAGCTTGGGCGC............	21	20	2.10	42	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGAA...............................................	27	20	2.05	41	0	0	0	0	0	0	0	0	0	0	0	0	41	0	0	0	0
...........................................................................CAGTGGTAGCAGTTGCGCTG.....................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................GGTAGCAGTTGCGCTG.....................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTGCCC..................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................TTTATCTGTACGGCGCTCATTCCTT..................................................	25	20	1.95	39	0	0	0	0	0	0	0	0	0	0	0	0	39	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCATTTCGGC.	29	20	1.90	38	0	0	0	0	0	0	0	0	38	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCT...........	23	20	1.80	36	0	0	0	0	0	0	0	0	0	35	0	1	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCT..........................................................	15	20	1.80	36	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCAA..................................................	24	20	1.70	34	0	0	0	0	0	0	0	0	0	0	0	0	34	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTT...........................................................................................................................	18	20	1.65	33	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCA........................................................	17	20	1.60	32	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCAA.......	23	20	1.60	32	0	0	0	0	0	0	6	0	0	26	0	0	0	0	0	0	0
.............................................................TAAGCCAAATTAGTCAGTGGTAGCAGT............................................................................................................................	27	17	1.59	27	0	0	0	0	0	0	1	10	1	12	3	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCATTTCGG..	28	20	1.40	28	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTTG.................................................	24	20	1.35	27	0	0	0	0	0	0	0	0	16	4	0	7	0	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACGTTAAGC....................	27	19	1.21	23	0	0	0	1	0	0	1	0	4	2	15	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTTTGT............................................	30	20	1.20	24	0	0	0	0	0	0	15	9	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCC....................................................	21	20	1.05	21	0	0	5	0	0	0	0	0	0	0	0	0	16	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTC.....................................................	21	20	1.05	21	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0
........................................................................................................................................................................TGTTGTTAGCTACCTACGTTAAGCT...................	25	20	1.00	20	0	0	0	0	0	0	3	2	6	2	7	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTGCCA..................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTGCCCAA................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................AATTAGTCAGTGGTAGCAGTTGCGC.......................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTGCCCA.................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................TGGTAGCAGTTGCGCTG.....................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................TTAGTCAGTGGTAGCAGTTGCGCT......................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................TATTATAAGCCAAATTAGTCAGTGG...................................................................................................................................	25	20	1.00	20	0	0	0	0	0	0	10	0	4	6	0	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGCTA.....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................GTGGTAGCAGTTGCGCTG.....................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................ATCTGTACGGCGCTCATTCCTT..................................................	22	20	0.95	19	0	0	0	4	0	0	0	0	0	0	0	0	15	0	0	0	0
..........................................................................................................................................................................................TTAAGCTTGGGCGCTGCATTTCGGC.	25	20	0.90	18	0	0	0	0	0	0	0	0	12	3	3	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGCA........	26	20	0.90	18	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTGCGT.......................................................................................................................	22	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCA.........................................................................................	23	20	0.80	16	0	0	0	0	0	0	13	0	0	3	0	0	0	0	0	0	0
..........................................................TTATAAGCCAAATTAGTCAGTGGTA.................................................................................................................................	25	20	0.80	16	0	0	0	0	0	0	2	5	1	8	0	0	0	0	0	0	0
..............................................................................................................................................................................TAGCTACCTACGTTAAGCTTGGGCGC............	26	19	0.79	15	0	0	0	0	0	0	0	0	1	0	14	0	0	0	0	0	0
...............................................................AGCCAAATTAGTCAGTGGTAGCAGT............................................................................................................................	25	17	0.76	13	0	0	0	0	0	0	0	0	0	3	10	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGA----------............................................................................	26	20	0.75	15	0	0	0	0	0	0	4	0	11	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TGGGCGCTGCATTTCGGCT	19	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTG..........	20	20	0.70	14	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGCTTGGGCGCTGCATTTCGG..	23	20	0.70	14	0	0	0	0	0	0	0	4	10	0	0	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCA..............................................................................................................................	15	20	0.70	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACGTTA.......................	24	19	0.68	13	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0
........................................................TATTATAAGCCAAATTAGTCAGTGGTA.................................................................................................................................	27	20	0.65	13	0	0	0	0	0	0	4	0	3	6	0	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGC.........	21	20	0.65	13	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0
.....................................................TAATATTATAAGCCAAATTAGTCAGTGG...................................................................................................................................	28	20	0.60	12	0	0	0	0	0	0	11	0	0	1	0	0	0	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCACGT----------............................................................................	23	20	0.60	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCT...................	15	20	0.55	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
............................................................................................................................................ATCTGTACGGCGCTCATTCCT...................................................	21	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACGTTAAGCT...................	28	19	0.53	10	0	0	0	0	0	0	3	0	3	1	3	0	0	0	0	0	0
...............................................................................................................................................................................AGCTACCTACGTTAAGCTTGGGCGC............	25	19	0.53	10	0	0	0	1	0	0	0	0	0	0	9	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTAT....................................................	22	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGG...............	15	20	0.45	9	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTGGGCGCTGCATTTCGG..	18	20	0.45	9	0	0	0	0	0	0	0	1	0	0	8	0	0	0	0	0	0
.........................................................................................................................................................................................GTTAAGCTTGGGCGCTG..........	17	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCACGC----------AT..........................................................................	25	20	0.40	8	0	0	0	4	0	0	0	0	3	0	0	0	0	1	0	0	0
.........................................................................................................................................................................GTTGTTAGCTACCTACGTTAAGCT...................	24	20	0.40	8	0	0	0	0	0	0	2	0	5	0	1	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACG.......................................................................................	25	20	0.40	8	0	1	0	0	0	0	0	0	1	0	6	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCA........	22	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0
........................................................................................................................................................................................CGTTAAGCTTGGGCGCTG..........	18	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCATTTCGGCA	30	20	0.40	8	0	0	0	0	0	0	2	6	0	0	0	0	0	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCACGC----------A...........................................................................	24	20	0.40	8	0	0	0	0	0	0	0	3	0	4	0	0	1	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACGTTAAG.....................	26	19	0.37	7	0	0	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0
...................................................................................................................................................CGGCGCTCATTCCTTGTTTGTT...........................................	22	20	0.35	7	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CATTCCTTGTTTGTTGTTGTT.....................................	21	20	0.35	7	0	0	0	1	0	0	0	6	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCTGTACGGCGCTCATTCCTTGTT...............................................	24	20	0.35	7	0	0	3	0	0	0	4	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTG..................................................	24	20	0.35	7	0	0	0	0	0	0	1	0	0	0	1	0	5	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTTGT................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTAA....................................................	22	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGCAT.......	27	20	0.35	7	0	0	0	0	0	0	0	0	0	0	4	0	2	1	0	0	0
...........................................................................................................................................................ATTCCTTGTTTGTTGTTGTTA....................................	21	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
..................................................................................................ATAGTGCAA-ACCGCTGCTCTCGCACGC----------A...........................................................................	28	20	0.30	6	0	0	0	1	0	0	3	0	1	0	0	0	1	0	0	0	0
.......................................................................................................................................................................TTGTTGTTAGCTACCTACGTTAAGC....................	25	20	0.30	6	0	0	0	0	0	0	0	0	2	1	3	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTC...............................................	27	20	0.30	6	0	0	0	0	0	0	1	1	0	2	0	0	2	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACGTTAA......................	25	19	0.26	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................................................TATAAGCCAAATTAGTCAGTGGTA.................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0
.................................................................................................CATAGTGCAA-ACCGCTGCTCTCGCACG.......................................................................................	27	20	0.25	5	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AGTGGTAGCAGTTGCG........................................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.....................................................................................................................................................................................CTACGTTAAGCTTGGGCGCTGCATT......	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
...................................................................................................................................................................................ACCTACGTTAAGCTTGG................	17	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCTGCATTTC....	26	20	0.25	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
........................................................TATTATAAGCCAAATTAGTCAGTGGT..................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TTGTTGTTAGCTACCTACGTTAAGCT...................	26	20	0.25	5	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0
.........................................................................................................................................................TCATTCCTTGTTTGTTGTTGTT.....................................	22	20	0.25	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
.......................................................................................................GCAA-ACCGCTGCTCTCGCACGC----------A...........................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GTTAAGCTTGGGCGCTGCATT......	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGCTTGGGCGCTG..........	15	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.....................................................TAATATTATAAGCCAAATTAGTCAGT.....................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	0	0
.............................................................TAAGCCAAATTAGTCAGTGGTAGCAGA............................................................................................................................	27	17	0.24	4	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0
.............................................................TAAGCCAAATTAGTCAGTGGTAGCA..............................................................................................................................	25	17	0.24	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0
...............................................................................................................................................................................AGCTACCTACGTTAAGCTTGGGCGCT...........	26	18	0.22	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................................GTTGTTGTTAGCTACCTACGTTAA......................	24	19	0.21	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................................GTTGTTGTTAGCTACCTACGTTAAGC....................	26	19	0.21	4	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0
........................................................................................................................................................................TGTTGTTAGCTACCTACGTTAAGCTT..................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGT.........	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
....................................................................................................AGTGCAA-ACCGCTGCTCTCGCACGC----------AT..........................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGC----------T...........................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTG..........	24	20	0.20	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0
...............................................................................................................................................TGTACGGCGCTCATTCC....................................................	17	20	0.20	4	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0
.................................................................................................CATAGTGCAA-ACCGCTGCTCTCGCA.........................................................................................	25	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCTGTACGGCGCTCATTCCTTG.................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
.....................................................................................................................................................GCGCTCATTCCTTGTT...............................................	16	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACGT----------............................................................................	26	20	0.20	4	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTGGGCGCTGCATTTCGGC.	19	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................ATCTGTACGGCGCTCATTCCTTGT................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTACGTTAAGCTTGGGCGCTGC.........	22	20	0.20	4	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGCTTGGGCGCTGCATT......	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTTGTTTGT............................................	29	20	0.20	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCACG.......................................................................................	22	20	0.20	4	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................TCTCGCACGC----------ATTTATCTGTACGGC.............................................................	25	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTTGAA...............................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
........................................................................................................................................................................TGTTGTTAGCTACCTACGTTAAGC....................	24	20	0.20	4	0	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	0
.............................................................TAAGCCAAATTAGTCAGTGGTA.................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCA...................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGCATT......	28	20	0.20	4	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0
..............................................................AAGCCAAATTAGTCAGTGGTAGCAGT............................................................................................................................	26	17	0.18	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................................................................TGTTGTTAGCTACCTACG..........................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTTTA.............................................	29	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATT......................................................	19	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
........................................................................................................................................ATTTATCTGTACGGCGCTCAT.......................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.......................................................................................................................................................................................ACGTTAAGCTTGGGCGCTGCATTTCGGC.	28	20	0.15	3	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTA..........	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................AGTGCAA-ACCGCTGCTCTCGCA.........................................................................................	22	20	0.15	3	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACC..............................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................ATATTATAAGCCAAATTAGTCAGTGG...................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................TCATTCCTTGTTTGTTGTTGTTATA..................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
..........................................................................................................................ACGC----------ATTTATCTGTACGGCGCTCAT.......................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................................................TTTATCTGTACGGCGCTCATTCC....................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................TGCCCATAGTGCAA-ACCGCTGCTCTCG...........................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................TTTATCTGTACGGCGCTCATTCCTTGTT...............................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
...........................................................................CAGTGGTAGCAGTTGCG........................................................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................TCATTCCTTGTTTGTTGTTGTTA....................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCCTTGA................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................TAGTCAGTGGTAGCAGTTG..........................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
....................................................................................................AGTGCAA-ACCGCTGCTCTCGCACGC----------ATT.........................................................................	28	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCTA...................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...........................................................................................................................................................................TGTTAGCTACCTACGTTAAGCTTGGGCG.............	28	20	0.15	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................AGCCAAATTAGTCAGTGGTAGCAG.............................................................................................................................	24	17	0.12	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................AGCCAAATTAGTCAGTGGTAGCAGTT...........................................................................................................................	26	17	0.12	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
TTGG-GTCATGCAGCCGCATGA--TATC---------------.........................................................................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........TGCAGCCGCATGA--TATC---------------TCATAA...................................................................................................................................................................	23	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................TTATAAGCCAAATTAGTCAGTGGTAGCA..............................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........TGCAGCCGCATGA--TATC---------------TCATA....................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................TATAAGCCAAATTAGTCAGTGGTAGCAGTT...........................................................................................................................	30	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................TATAAGCCAAATTAGTCAGTGGTAGC...............................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TTGTTGTTGTTAGCTACCTACGTTAAGCT...................	29	19	0.11	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................GTTGTTGTTAGCTACCTACGTTAAGCT...................	27	19	0.11	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACGTT........................	23	19	0.11	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................TATCTGTACGGCGCTCATTCG....................................................	21	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTACGTTAAGCTTGGGCGCTGCAT.......	24	20	0.10	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................ATCTGTACGGCGCTCATTCCTTGTT...............................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................TGTACGGCGCTCATTCCTTGT................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................ATAGTGCAA-ACCGCTGCTCTCC...........................................................................................	22	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGTTAGCTACCTACGTTAAGCTTT.................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................AGTGCAA-ACCGCTGCTCTCGCACGC----------............................................................................	25	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................TTAAGCTTGGGCGCTGCATTTCGG..	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................TAGTGCAA-ACCGCTGCTCTCGCACA.......................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................GTGCAA-ACCGCTGCTCTCGCA.........................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACGTTAAGCTTGGGCGCTGCA........	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGA..............	16	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTCCTTGTG...............................................	27	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACGTTAAGCTTGGGCGCT...........	19	20	0.10	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................TTAGTCAGTGGTAGCAGT............................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................CTTGGGCGCTGCATTTCGGC.	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.....................................................................................................................................................................TGTTGTTGTTAGCTACCTACG..........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................CGCTCATTCCTTGTTTGTTGTTGT......................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................TTCCTTGTTTGTTGTTGTTA....................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGCTTGGGCGCTGCATTTCGGCT	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................CTGTACGGCGCTCATTCCTTG.................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................TGCAA-ACCGCTGCTCTCGCAA........................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0

dm3

TTGG-GTCATGCAGCCGCTAAA--AC-TGT------------GCAGTACTCTTTAATATTGTAAGCCGAAGTAGTCAGTGGTAGCAGTTGCGATGCCCATAGTGCAA-ACCGCTGTTCTCGCACGC----------ATTTATCTGTACGGCGCTCATTCCTTGTTC-TTTTTGTTATCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................TATTGTAAGCCGAAGTAGTCAGT.....................................................................................................................................	23	20	134.40	2688	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	17	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39	57	0	0	72	92	0	105	0	139	0	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	126	1186	0	0	0	0	0	77	0	0	0	0	0	0	1	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	61	0	0	0	126	0	118	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	291	3	0	0	0	0	0
........................................................TATTGTAAGCCGAAGTAGTCAGTGG...................................................................................................................................	25	20	104.40	2088	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	9	0	0	0	0	0	0	0	0	1	0	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	13	0	1	0	0	8	0	0	0	0	0	0	0	0	142	0	0	450	0	0	0	189	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	86	0	0	0	0	490	0	0	0	0	0	0	0	0	0	0	484	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0
........................................................TATTGTAAGCCGAAGTAGTCAGTG....................................................................................................................................	24	20	96.20	1924	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	0	2	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	107	0	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	368	0	0	0	0	162	0	30	0	0	0	0	0	0	0	0	0	207	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	66	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	428	0	367	0	0	0	0	0	0
...........................................................................................................................................................................TGTTATCTACCTACGTTAAGCTTGG................	25	20	38.20	764	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	269	0	301	157	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................TTTATCTGTACGGCGCTCATTCCTTGTTC-.............................................	29	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TTTAATATTGTAAGCCGAAGTAGTCAGT.....................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CAGTTGCGATGCCCATAGTGCAA-A.......................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TTATCTGTACGGCGCTCATTC.....................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CTCGCACGC----------ATTTATCTGTACGGC.............................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................C-TTTTTGTTATCTACCTACGTTAAGCT...................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GTAAGCCGAAGTAGTCAGTGG...................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0

droEre2

TCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TTGT-GTCATGCAGCCGCCTAA--TC-----------------TCATACTCT-TAATATTGTAAGCCGAAGTAGTCAGTGGTAGCAGTTGCGATGCCCATAGTGCAAAACCGCTGTTCTCGCTCGC----------ATTTATCTGTACGGCGCGCATTCCTTGTTC-TCTTTGTTATCTACCTACGTTAAGCTTGGGCGCTGCATTTCGGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................GTTCTCGCTCGC----------ATTTATCTGTACGG..............................................................	26	2	2.00	4	0	0	0	0	0	0	0	0	0	0	4
....................................................................AAGTAGTCAGTGGTAGCAGTTGCGA.......................................................................................................................	25	20	0.85	17	0	0	0	0	0	0	0	0	0	0	17
....................................................................AAGTAGTCAGTGGTAGCAGTTGCG........................................................................................................................	24	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGCTTGGGCGCTGCATTTCGGC.	24	20	0.25	5	0	3	2	0	0	0	0	0	0	0	0
...........................................................TGTAAGCCGAAGTAGTCAGTGGTAGC...............................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TACCTACGTTAAGCTTGGGCGCTGC.........	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGTTATCTACCTACGTTAAGCTTGGGC..............	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGTTATCTACCTACGTTAAGCTTGGG...............	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................CGAAGTAGTCAGTGGTAGCAGTTG..........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................AAGTAGTCAGTGGTAGCAGTTGCGATG.....................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TCAGTGGTAGCAGTTGCGATGCCC..................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TTATCTACCTACGTTAAGCTTGGGCGCT...........	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................TGTAAGCCGAAGTAGTCAGTGGTAGCA..............................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................TAATATTGTAAGCCGAAGTAGTCAG......................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................TCAGTGGTAGCAGTTGCGATGCCCA.................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGTTATCTACCTACGTTAAGCC...................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................GTTATCTACCTACGTTAAGCTTG.................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AAGCTTGGGCGCTGCATTTCGG..	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................AGCCGAAGTAGTCAGTGGTAGCA..............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................GTTATCTACCTACGTTAAGCTTGGGC..............	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTGG-TACATCCAGACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGG-GTCACGCAGCCGCAGCAGCTA---ATTAGCTTGTAAATCCGTACTCTTATATCAATTGCATCACGAAAG--------------------------------------------------GCATCTCTCTCTATTTATCT------C------------TCC-CATTTGTTGTATGCTTGCATT---TTTGGGCCCAGCAT-TCGGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGAC-TTTGTGCAGCCCGACAC--TATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTAG----------CCACAATT--AATT---------------TTGTACCTTTAGATTTTGTACAACCAGAT--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGA-GTCATCCAGCCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGA-GTCGTGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTGG-GCTAAGCAGCCACCAGA--TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCGA-GACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GTCG-CTCATGCAACATCTTGG--TATT---------------GTATAGTCTTTGGTATTATGTATCAAAATAAAAAACTGTAGTGG-----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................TTGG--TATT---------------GTATAGTCTTTGGTA..........................................................................................................................................................	23	20	0.60	12	0	12	0	0	0	0
..............CATCTTGG--TATT---------------GTATAGTCTTTGGT...........................................................................................................................................................	26	20	0.50	10	10	0	0	0	0	0
..................TTGG--TATT---------------GTATAGTCTTTGGTATT........................................................................................................................................................	25	20	0.25	5	0	4	0	0	0	1
..............CATCTTGG--TATT---------------GTATAGTCTT...............................................................................................................................................................	22	20	0.20	4	0	4	0	0	0	0
................TCTTGG--TATT---------------GTATAGTCTT...............................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................TGG--TATT---------------GTATAGTCTTTGGTAT.........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........TGCAACATCTTGG--TATT---------------GTATAGTC.................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0

droWil2

GTTG-TTCTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTACGTTAAGCATACGCGATGTATGTTGGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droMoj3

TTGG-GTCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TTGCTGTCATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_243

scaffold_137:52124-52206 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.7	-12.3	-12.3