dse_228

GTTCGCTGCTCGACGGGGCAGCTGCATTCTTTCTCGCTCCCACCCTGCCCCTGGAATCCCCTGCACCTGTTCGTTCTCGAGGTGCGAGCGAGAGGCCAAGAGGCAGAGGTAGAGCGGCACTTGCCACGCTTGACTTGCAGCAGGTCTGCAGGCGACGC *********************************((((..((((((((.((((..((..(((((((...(((....)))))))).))...))..)).)).))))).))).)))).......**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	V114 embryo	V113 male body	M054 female body
..................................................................................TGCGAGCGAGAGGCCAAGAGGCAGA...................................................	25	0	1	6.00	6	2	4	0	0
..................................................................................TGCGAGCGAGAGGCCAAGAGGC......................................................	22	0	1	4.00	4	1	0	3	0
..................................................................................TGCGAGCGAGAGGCCAAGAGG.......................................................	21	0	1	3.00	3	2	0	1	0
..................................................................................TGCGAGCGAGAGGCCAAGAGGCA.....................................................	23	0	1	2.00	2	1	0	1	0
..................................................CTGGAATCCCCTGCACCTGTTC......................................................................................	22	0	1	1.00	1	0	1	0	0
....................................................................................CGAGCGAGAGGCCAAGAGGCGGAGG.................................................	25	1	1	1.00	1	0	1	0	0
...............................................................................AGGTGCGAGCGAGAGGCCAAG..........................................................	21	0	1	1.00	1	1	0	0	0
..................................................................................TGCGAGCGAGAGGACAAGAGG.......................................................	21	1	1	1.00	1	1	0	0	0
..................................................................................TGCGAGCGAGAGGCCAAGA.........................................................	19	0	1	1.00	1	1	0	0	0
...................................................................................GCGAGCGAGAGGCCAAGAGGCAGAGGG................................................	27	1	1	1.00	1	1	0	0	0
...........................................................................CTCGAGGTGCGAGCGAGAGG...............................................................	20	0	1	1.00	1	0	1	0	0
......................................................AATCCCCTGCACCTGTTCGTT...................................................................................	21	0	1	1.00	1	0	0	0	1
...................................................................................GCGAGCGAGAGGCCAAGAGGC......................................................	21	0	1	1.00	1	0	1	0	0
.............................................................................................................TAGAGCGGCACTTGCCACGCT............................	21	0	1	1.00	1	1	0	0	0
..................................................................................TGCGAGCGAGATGCCAAGAGGT......................................................	22	2	2	0.50	1	0	0	1	0
...................................................................................GCAAGGGAGAGGCCAAGAGG.......................................................	20	2	2	0.50	1	0	1	0	0

CAAGCGACGAGCTGCCCCGTCGACGTAAGAAAGAGCGAGGGTGGGACGGGGACCTTAGGGGACGTGGACAAGCAAGAGCTCCACGCTCGCTCTCCGGTTCTCCGTCTCCATCTCGCCGTGAACGGTGCGAACTGAACGTCGTCCAGACGTCCGCTGCG **********************************((((..((((((((.((((..((..(((((((...(((....)))))))).))...))..)).)).))))).))).)))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	V113 male body	M054 female body	V115 head
..................................................................................................................GCCGTGAACGGTGCGAACTGAA......................	22	0	1	2.00	2	1	1	0	0
...........................................GGACGGGGACCTTAGGGGACGT.............................................................................................	22	0	1	1.00	1	1	0	0	0
..........................AAGAAAGAGGTAGAGTGGGAC...............................................................................................................	21	3	4	0.50	2	0	0	2	0
..........................AAGAAAGAGCGAAGGTGGA.................................................................................................................	19	2	3	0.33	1	0	0	0	1
.........................................................................................................................ACGGTGCGAAGTGAAGGTCA.................	20	3	11	0.09	1	0	1	0	0
....................................................................................................................CGTGAGTGGAGCGAACTGAA......................	20	3	11	0.09	1	1	0	0	0
.....................................TGGGTGGGACGGTGACCGTA.....................................................................................................	20	3	17	0.06	1	0	0	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_23:627206-627363 +	dse_228	GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------ATCCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC
droSim2	2r:21232656-21232813 +		GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------ATCCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC
dm3	chr2R:20770164-20770321 +		GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------TTCCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC
droEre2	scaffold_4845:22139668-22139825 +		GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTTTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------AACCC---------CTGCACCTGTTCGTTCT-CGTGGTGCGA----------------------------------GCGAGAG-GC-------------CAAAAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC
droYak3	2R:20732912-20733069 +		GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------AACCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC
droEug1	scf7180000409464:1131541-1131708 +		GTT-------------------------CGCTCC--TCGT-------CGG----------------TGCAG---CTGCATTCTTTCTCGTTCC--CA------CCC-------CT-----GTCCTGG------AAG-CCCC-----------------------------------TGGAAACCC---------CTGCACCTGTGCGTTCT-TGAAGTGCGA----------------------------------GCAAGAG-GC-------------ACACAGGCGAGGCC--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC
droBia1	scf7180000301754:5733693-5733853 +		GTT-------------------------CGCTGC--TCGT-------TGG----------------TGCAG---CTGCATTCTTTCTCGCTCC--CA------CCC-------CT-----GCCCCGG------AGG-CCCC-----------------------------------TGGAAACCCCAGCGAACCCTGCACCTGTGCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------------------------A--------------------------GAGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------AGCGACGC
droTak1	scf7180000415805:456807-456967 -		GTT-------------------------CGCTGC--TCGT-------TGC----------------TGCAG---CTGCATTCTTTCTCGCTCC--CA------CCC-------CG-----GCC----CCTGGA-AG-CCCC-----------------------------------TGCACACCC-TGCACACCCTGCACCTGTGCGTTCT-CGAGGTGCAA----------------------------------CAGAGAG--------------------------------AGA--------------------------GGGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------AGCAACGC
droEle1	scf7180000491214:2143121-2143299 +		GCT-------------------------CGCTCC--TCGT-------CGG----------------TGCAG---CTGCATTCTTTCTCGCTTC--CACTTCCACCCCCGGTCCCG-----GCC----CCTGGA-----------------------------------------------AACACCAGT--ACCTAGTACCTGTGCGTTAG-TTAGGTGCGA----------------------------------GCGAGAG-GC-------------CAACAGCC--------AGA--------------------------GCGGCACTTGCCACGCTTAACTT---------------GCAG---CAG------GTC-TGCAGGGGAAGGCGACAC
droRho1	scf7180000779661:65992-66148 -		GTT-------------------------CGCTCC--TCGT-------CGG----------------TGCAG---CTGCATTCTTTCCCGCTTC--CA------CCC--------C--CT-G------------AAC-CCCA-----------------------------------AGGAAACAC---------CAGTACCTGTGCGTTAT-TTAGGTGCGA----------------------------------GTGAGAG-GC-------------CAACAGCC--------AGA--------------------------CCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GTCGACGC
droFic1	scf7180000453858:728782-728920 -		GTT-------------------------CG-------------------G----------------TGCAG---CTGCATTCTTTCTCGCTCC--CA------CCC-------CT-----GCC----CCTGAA-----------------------------------------------AAC-----------CTGCACCTG--CGTTCT-TAAGGAGCGA----------------------------------ACGAGAG-GC---------------------AGAGATCCAGT--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCAAGGC
droKik1	scf7180000302366:904301-904459 +		TT---------------------------GTTGT--TCG----------GTGCAGCG--------CAGG--CAGCTGCATTCCTTCTCGCTCT--CT------CGC--------CCCCTGGCT----CCT---------------------------------------------------ACTC---------CTGCACCTGTGCGTTCT-CGACGG-CTA-----------------------------------------------------------------------------------GCTAGTGTGTGTGTGTGTGAGTGCACTTGCCACGCTTGACTT---------------GCAG---CAG--GGCTGTC-TGCA------GGCGACGC
droAna3	scaffold_13266:12057186-12057357 +		GTT-------------------------CGTTCC--TCGCTCCTCCTCAGTGCAGCA--------GTGCAG---CTGCATTCTTTCTCGCTCC-ACA------CC--------CC-----GCA----CCTTTC-CTC---AGCCCGA-----------------------------------------------GAGCACCTGTTTATTCT-AAAGGAGCAA----------------------------------AAGAGAC-GA-------------------AC--------AGA--------------------------AGTGCACTTGCCACGCTTGAATT---------------GGTGAAGCGG----CAGCC-TGCT------CTCCACGC
droBip1	scf7180000396547:422344-422525 -		GTT-------------------------CGTTCC--TCGCTCCTCCTCAGTGCAGCCGTGTAGCCGTGCAG---CTGCATTCTTTCTCGCTCC--AC------CCC--------C--CC-GCA----CCTTTC-CTC---GCTCCGA-----------------------------------------------GTGCACCTGTTTATTCT-GAAGGAGCAA----------------------------------AAGAGAC-GA-------------------AC--------AGA--------------------------AGTGCACTTGCCACGCTTGAATT---------------GCTG---GAGCTGGCTGCC-TGCT------CTCCACGC
dp5	3:1856084-1856280 +		GTT-------------------------C----------------------------------------AG---CTGCATTCTTTACC-CTCCAAG-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------CATACTTGAGTGTTCT--AAGGTGCAATAGCCATACATAGAGAGAGA--GAGAGAGAGCGAATGAGAG-AAAGAGGGAAAGGGACAAGTG---------------------------------------GCTGCACTTGCCACGCTTGACTTGACCACATTCAACTTGCAG---CAGCAGGCTGCC-TGCA------TGTAATGT
droPer2	scaffold_2:2039088-2039286 +		GTT-------------------------C----------------------------------------AG---CTGCATTCTTTACC-CTCCAAG-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------CATACTTGAGTGTTCT--AAGGTGCAATAGCCATACATAGAGAGAGAGAGAGAGAGAGCGAATGAGAG-AAAGAGGGAAAGGGACAAGTG---------------------------------------GCTGCACTTGCCACGCTTGACTTGACCACATTCAACTTGCAG---CAGCAGGCTGCC-TGCA------TGTAATGT
droWil2	scf2_1100000004510:1786027-1786233 +		TTT-------------------------T--------CCT-------TGT----------------TGCAG---CTGGCTCCTTTTTT-CTCCCTCA------CT--------CT-----CTC----TCTGTC-TTTCCCGCTCTGACTCGTTGTCGTGTCTCTTTCTGGCTCCTGCTGAAAGA-----------------------------ACGGTGCAA----------------------------------AAGAGTAGAA-------------CAAGTGGCAGGCAGGCAGGTCAGGTTGCCATCGCCTTTGCTC---GTTGCACTTGCCACGCTCGACCA-----CATT-------------TTC------TTCTTCTT------TGCGATAC
droVir3	scaffold_12823:2354272-2354374 +		GTC-------------------------AAGTGTTGTCCT-------CGC----------------TGCAG---CTGCATTACATTACATTTC--TT------CGT--------C-----TCC----CTT----------------------------------------------------------------TTGAGCGTATT-ATTCTGAAAGGTGCGA----------------------------------GAGGAGAGAA-------------CAAGTGACTGGG-------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:15714030-15714151 -		GCTACGAGCAACGCCAGCCAAACAGCTCAAGTGAAGTCCT-------CGT----------------TGCAG---CTGCATTGCATTACATTTC--TT------CGT--------C-----TCC----CTTTTA-----------------------------------------------A--------------------CATACGATTC-TAAGGTGCGA----------------------------------AAGAGA---A-------------CAAGTGGCAGAG-------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------ATCCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGA..............................................................................................................	25	1	6.00	6	0	0	4	2
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGC.................................................................................................................	22	1	4.00	4	0	3	0	1
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGG..................................................................................................................	21	1	3.00	3	0	1	0	2
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCA................................................................................................................	23	1	2.00	2	0	1	0	1
................................................................................................................................CTGGA-----------------------------------------------ATCCC---------CTGCACCTGTTC..................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................AGGTGCGA----------------------------------GCGAGAG-GC-------------CAAG.....................................................................................................................	21	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGA....................................................................................................................	19	1	1.00	1	0	0	0	1
..........................................................................................................................................................................................................................GCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGG--.........................................................................................................	27	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................CT-CGAGGTGCGA----------------------------------GCGAGAG-G.......................................................................................................................................	20	1	1.00	1	0	0	1	0
....................................................................................................................................A-----------------------------------------------ATCCC---------CTGCACCTGTTCGTT...............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................GCGA----------------------------------GCGAGAG-GC-------------CAAGAGGC.................................................................................................................	21	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................T--AGA--------------------------GCGGCACTTGCCACGCT...........................................................	21	1	1.00	1	0	0	0	1

droSim2

GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------ATCCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGA..............................................................................................................	25	1	4.00	4	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGG..................................................................................................................	21	1	3.00	3	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAG...............................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................CGA----------------------------------GCGAGAG-GC-------------CAAG.....................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................G-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGC.......................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CGGCACTTGCCACGCTTGACTT---------------GC....................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................T-----GCC----CCTGGA-----------------------------------------------ATCCC---------CTGCACC.......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GGCAGAGGT--AGA--------------------------GCGGCACTA...................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................CAAGAGGCAGAGGT--AGA--------------------------GCG.........................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................CCTGTTCGTTCT-CGA.........................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGAGGCAGAGGT--AGA--------------------------GCG.........................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------ATCC........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GGCAGAGGT--AGA--------------------------GCGGCACTTGCCA...............................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CTTGCCACGCTTGACTT---------------GCA...................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAGGCAGAGGT--AGA--------------------------GCGGCACTTG..................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................TCGCTCC--CA------CC--------CT-----GCC----CCT..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------......................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGA....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CAAGAGGCAGAGGT--AGA--------------------------GCGG........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................CGTTCT-CGAGGTGCGA----------------------------------GCGAGA..........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................TTCTCGCTCC--CA------CC--------A..............................................................................................................................................................................................................................................................................................	15	13	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GGCAGAGGT--AGA--------------------------GCGGTTT.....................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCAG---CAG------GTC-TGCA------A.......	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

dm3

GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------TTCCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGG..................................................................................................................	21	1	158.00	158	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	2	0	4	1	0	0	0	2	2	5	2	2	2	1	1	1	0	0	0	0	1	0	3	0	0	0	0	0	3	1	0	3	0	1	2	2	2	0	1	0	9	35	10	4	5	9	4	3	0	1	1	3	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGA..............................................................................................................	25	1	143.00	143	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	8	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	2	1	1	1	0	0	0	0	0	2	0	3	0	2	0	0	1	0	2	1	0	12	1	3	0	1	1	1	1	0	0	1	3	0	0	0	0	1	0	1	1	1	4	3	1	3	5	5	1	5	0	1	4	0	0	7	1	2	5	0	7	1	4	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAG...............................................................................................................	24	1	120.00	120	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	2	1	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	1	1	0	0	1	0	0	1	0	0	0	0	0	2	0	1	0	2	0	1	1	2	0	2	1	3	1	2	0	0	2	0	1	0	0	0	1	2	0	0	1	0	0	2	0	3	2	0	1	4	1	4	2	2	0	1	8	0	0	0	0	4	1	3	3	1	1	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGC.................................................................................................................	22	1	97.00	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	3	0	1	0	2	1	0	1	0	1	1	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	3	5	4	2	0	3	4	2	1	1	0	3	10	5	6	1	5	2	0	0	1	3	1	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCA................................................................................................................	23	1	96.00	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	6	1	0	0	0	2	2	0	0	0	0	0	3	0	0	0	0	0	0	1	1	0	0	0	1	0	1	1	2	2	1	1	1	3	5	0	6	0	2	4	4	3	3	2	3	2	4	1	3	3	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAG...................................................................................................................	20	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	2	1	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	1	1	2	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAT...............................................................................................................	24	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGA....................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	3	0	0	0	1	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................AAGAGGCAGAGGT--AGA--------------------------GCGGC.......................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................GAGGCAGAGGT--AGA--------------------------GCGGCACTTGC.................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................AAGAGGCAGAGGT--AGA--------------------------GC..........................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0
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..................................................................................................................................................................................................................T-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------C........................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................AG---CAG------GTC-TGCA------GGCGACGC	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................T--AGA--------------------------GCGGCACTTGCCACGCT...........................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCGA----------------------------------GCGAGAG-GC-------------CAAGAGG..................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................GTTCGTTCT-CGAGGTGCGA----------------------------------................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................A----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AG.......................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GGCAGAGGT--AGA--------------------------GCGGCACTTGCCA...............................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................C----CCTGGA-----------------------------------------------TTCCC---------CTGCACCTG.....................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................A----------------------------------GCGAGAG-GC-------------CAAGAGGCAGA..............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGA..................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GCAGAGGT--AGA--------------------------GCGGCACTTGCCACG.............................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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..................................................................................................................................................................................................................T-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------.........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
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........................................................................................................................................................................................................................................................................................................................................CACTTGCCACGCTTGACTT---------------......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................A--------------------------GCGGCACTTGCCACGCTTGACTT---------------......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGTT.................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CC---------CTGCACCTGTTCGTTC..............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GA----------------------------------GCGAGAG-GC-------------CAAGAGGC.................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--A........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CCTGGA-----------------------------------------------TTCCC---------CTGCACCTGTTCGT................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAA.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CAAGAGGCAGAGGT--AGA--------------------------GC..........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------TTCCC---------CTGCACC.......................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAGGCAGAGGT--AGA--------------------------GCGGC.......................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGGT.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGGCAGAGGT--AGA--------------------------GCGGCACTTGCC................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGC..................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------.........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................T-----GCC----CCTGGA-----------------------------------------------TTCCC---------CTGCAC........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGTTT...............................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTTTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------AACCC---------CTGCACCTGTTCGTTCT-CGTGGTGCGA----------------------------------GCGAGAG-GC-------------CAAAAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GC....................................	28	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................AGGCAGAGGT--AGA--------------------------GCGGCACTTGCC................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................CT-CGTGGTGCGA----------------------------------GCGAGAG-GC-------------C........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................GTGCGA----------------------------------GCGAGAG-GC-------------CAAAAGGCAGAG.............................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................G-GC-------------CAAAAGGCAGAGGT--AGA--------------------------GCGGCAC.....................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................GTTCT-CGTGGTGCGA----------------------------------GCGAGA..........................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................CTGGA-----------------------------------------------AACCC---------CTGCACCTGTTCG.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................A--------------------------GCGGCACTTGCCACGCTTGACTT---------------GC....................................	26	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AAAGGCAGAGGT--AGA--------------------------GCGGCA......................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................ACTTGCCACGCTTGACTT---------------GC....................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................G---CAG------GTC-TGCA------GGCGACGC	19	1	1.00	1	0	1	0	0	0	0	0

droYak3

GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---CTGCATTCTTTCTCGCTCC--CA------CC--------CT-----GCC----CCTGGA-----------------------------------------------AACCC---------CTGCACCTGTTCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................GCGGCACTTGCCACGCTTGACTT---------------GC....................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................G---CTGCATTCTTTCTCGCTCC--C................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCGA----------------------------------GCGAGAG-GC-------------CAAGAGGCAGA..............................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CC----CCTGGA-----------------------------------------------AACCC---------CTGCACC.......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
GTT-------------------------CGCTGC--TCGA-------CGG----------------GGCAG---C.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................G-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GCGG........................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GC....................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GTTCGTTCT-CGAGGTGCGA----------------------------------................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................CGA-------CGG----------------GGCAG---CTGCATTCTTTCT.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGAG-GC-------------CAAGAGGCAGAGGT--AGA--------------------------GC..........................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCACTTGCCACGCTTGACTT---------------GC....................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGTTCGTTCT-CGAGGTGCG...................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTT-------------------------CGCTCC--TCGT-------CGG----------------TGCAG---CTGCATTCTTTCTCGTTCC--CA------CCC-------CT-----GTCCTGG------AAG-CCCC-----------------------------------TGGAAACCC---------CTGCACCTGTGCGTTCT-TGAAGTGCGA----------------------------------GCAAGAG-GC-------------ACACAGGCGAGGCC--AGA--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTT-------------------------CGCTGC--TCGT-------TGG----------------TGCAG---CTGCATTCTTTCTCGCTCC--CA------CCC-------CT-----GCCCCGG------AGG-CCCC-----------------------------------TGGAAACCCCAGCGAACCCTGCACCTGTGCGTTCT-CGAGGTGCGA----------------------------------GCGAGAG-GC-------------------------------A--------------------------GAGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------AGCGACGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTT-------------------------CGCTGC--TCGT-------TGC----------------TGCAG---CTGCATTCTTTCTCGCTCC--CA------CCC-------CG-----GCC----CCTGGA-AG-CCCC-----------------------------------TGCACACCC-TGCACACCCTGCACCTGTGCGTTCT-CGAGGTGCAA----------------------------------CAGAGAG--------------------------------AGA--------------------------GGGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------AGCAACGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCT-------------------------CGCTCC--TCGT-------CGG----------------TGCAG---CTGCATTCTTTCTCGCTTC--CACTTCCACCCCCGGTCCCG-----GCC----CCTGGA-----------------------------------------------AACACCAGT--ACCTAGTACCTGTGCGTTAG-TTAGGTGCGA----------------------------------GCGAGAG-GC-------------CAACAGCC--------AGA--------------------------GCGGCACTTGCCACGCTTAACTT---------------GCAG---CAG------GTC-TGCAGGGGAAGGCGACAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTT-------------------------CGCTCC--TCGT-------CGG----------------TGCAG---CTGCATTCTTTCCCGCTTC--CA------CCC--------C--CT-G------------AAC-CCCA-----------------------------------AGGAAACAC---------CAGTACCTGTGCGTTAT-TTAGGTGCGA----------------------------------GTGAGAG-GC-------------CAACAGCC--------AGA--------------------------CCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GTCGACGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTT-------------------------CG-------------------G----------------TGCAG---CTGCATTCTTTCTCGCTCC--CA------CCC-------CT-----GCC----CCTGAA-----------------------------------------------AAC-----------CTGCACCTG--CGTTCT-TAAGGAGCGA----------------------------------ACGAGAG-GC---------------------AGAGATCCAGT--------------------------GCGGCACTTGCCACGCTTGACTT---------------GCAG---CAG------GTC-TGCA------GGCAAGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TT---------------------------GTTGT--TCG----------GTGCAGCG--------CAGG--CAGCTGCATTCCTTCTCGCTCT--CT------CGC--------CCCCTGGCT----CCT---------------------------------------------------ACTC---------CTGCACCTGTGCGTTCT-CGACGG-CTA-----------------------------------------------------------------------------------GCTAGTGTGTGTGTGTGTGAGTGCACTTGCCACGCTTGACTT---------------GCAG---CAG--GGCTGTC-TGCA------GGCGACGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GTT-------------------------CGTTCC--TCGCTCCTCCTCAGTGCAGCA--------GTGCAG---CTGCATTCTTTCTCGCTCC-ACA------CC--------CC-----GCA----CCTTTC-CTC---AGCCCGA-----------------------------------------------GAGCACCTGTTTATTCT-AAAGGAGCAA----------------------------------AAGAGAC-GA-------------------AC--------AGA--------------------------AGTGCACTTGCCACGCTTGAATT---------------GGTGAAGCGG----CAGCC-TGCT------CTCCACGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................G---CTGCATTCTTTCTCGCTCC-ACA------CC--------CC-----G.......................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................A----CCTTTC-CTC---AGCCCGA-----------------------------------------------GAGC..........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................TTCTTTCTCGCTCC-ACA------CC--------CC-----GCA----CCTTT............................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................CGA-----------------------------------------------GAGCACCTGTTTATTCT-AAAGGAGC....................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
................................................................................................................................CTTTC-CTC---AGCCCGA-----------------------------------------------GAGCACCTGT....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................CTCGCTCC-ACA------CC--------CC-----GCA----CCT..............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGA--------------------------AGTGCACTTGCCACGCTTGAATT---------------GGT...................................	29	1	1.00	1	0	1	0	0	0	0

droBip1

GTT-------------------------CGTTCC--TCGCTCCTCCTCAGTGCAGCCGTGTAGCCGTGCAG---CTGCATTCTTTCTCGCTCC--AC------CCC--------C--CC-GCA----CCTTTC-CTC---GCTCCGA-----------------------------------------------GTGCACCTGTTTATTCT-GAAGGAGCAA----------------------------------AAGAGAC-GA-------------------AC--------AGA--------------------------AGTGCACTTGCCACGCTTGAATT---------------GCTG---GAGCTGGCTGCC-TGCT------CTCCACGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTT-------------------------C----------------------------------------AG---CTGCATTCTTTACC-CTCCAAG-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------CATACTTGAGTGTTCT--AAGGTGCAATAGCCATACATAGAGAGAGA--GAGAGAGAGCGAATGAGAG-AAAGAGGGAAAGGGACAAGTG---------------------------------------GCTGCACTTGCCACGCTTGACTTGACCACATTCAACTTGCAG---CAGCAGGCTGCC-TGCA------TGTAATGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................AAGAGGGAAAGGGACAAGTG---------------------------------------G...........................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AG-AAAGAGGGAAAGGGACA.......................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGCCACGCTTGACTTGACCA................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GGTGCAATAGCCATACATAGAGAGA................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................G-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------CATACTTG.....................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GACTTGACCACATTCAACTTGC....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTGACTTGACCACATTCAACTTGCAG---...............................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................CTCCAAG-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------C............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GTT-------------------------C----------------------------------------AG---CTGCATTCTTTACC-CTCCAAG-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------CATACTTGAGTGTTCT--AAGGTGCAATAGCCATACATAGAGAGAGAGAGAGAGAGAGCGAATGAGAG-AAAGAGGGAAAGGGACAAGTG---------------------------------------GCTGCACTTGCCACGCTTGACTTGACCACATTCAACTTGCAG---CAGCAGGCTGCC-TGCA------TGTAATGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................CCAAG-CGTCTACCC----------------------CTCCC-CTT---------A---------------------------------G--------------C............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................GAGAGAGCGAATGAGAG-AAA.....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................TGAGAG-AAAGAGGGAAAGGGAC........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................ATAGAGAGAGAGAGAGAGA......................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droWil2

TTT-------------------------T--------CCT-------TGT----------------TGCAG---CTGGCTCCTTTTTT-CTCCCTCA------CT--------CT-----CTC----TCTGTC-TTTCCCGCTCTGACTCGTTGTCGTGTCTCTTTCTGGCTCCTGCTGAAAGA-----------------------------ACGGTGCAA----------------------------------AAGAGTAGAA-------------CAAGTGGCAGGCAGGCAGGTCAGGTTGCCATCGCCTTTGCTC---GTTGCACTTGCCACGCTCGACCA-----CATT-------------TTC------TTCTTCTT------TGCGATAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................GAA-------------CAAGTGGCAGGCAGGC.........................................................................................................	19	1	3.00	3	0	0	1	2	0
...................................................................................................................................................................................AAAGA-----------------------------ACGGTGCAA----------------------------------AAGAGTA.........................................................................................................................................	21	1	3.00	3	0	0	3	0	0
......................................................................................................................................................................................GA-----------------------------ACGGTGCAA----------------------------------AAGAGTAGAA-------------.........................................................................................................................	21	1	2.00	2	0	0	2	0	0
..................................................................................................................................................................................GAAAGA-----------------------------ACGGTGCAA----------------------------------AAGAGTAGAA-------------C........................................................................................................................	26	1	2.00	2	2	0	0	0	0
................................................................................CCTTTTTT-CTCCCTCA------CT--------CT-----........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................CTTGCCACGCTCGACCA-----CATG-------------...............................	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................TTCTGGCTCCTGCTGAAAGA-----------------------------ACGGTGCA...................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................GAAAGA-----------------------------ACGGTGCAA----------------------------------AAGAGTAGA.......................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................GAAAGA-----------------------------ACGGTGCAA----------------------------------AAGA............................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................AGAA-------------CAAGTGGCAGGCAGGCA........................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................AAAGA-----------------------------ACGGTGCAA----------------------------------AAGAGTAGAA-------------C........................................................................................................................	25	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................AA----------------------------------AAGAGTAGAA-------------CAAGTGGCAGGCAG...........................................................................................................	26	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................AAAGA-----------------------------ACGGTGCAA----------------------------------AAGA............................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................GCAA----------------------------------AAGAGTAGAA-------------CAAGTG...................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................TTTGCTC---GTTGCACTTGCCACGCTCGACC......................................................	29	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................A-----------------------------ACGGTGCAA----------------------------------AAGAGTAG........................................................................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

GTC-------------------------AAGTGTTGTCCT-------CGC----------------TGCAG---CTGCATTACATTACATTTC--TT------CGT--------C-----TCC----CTT----------------------------------------------------------------TTGAGCGTATT-ATTCTGAAAGGTGCGA----------------------------------GAGGAGAGAA-------------CAAGTGACTGGG-------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................TTCTGAAAGGTGCGA----------------------------------GAGGAG..........................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTATT-ATTCTGAAAGGTGCGA----------------------------------GAGGAGA.........................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................................GTATT-ATTCTGAAAGGTGCGA----------------------------------GA..............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................ATTCTGAAAGGTGCGA----------------------------------GAGGAGAGAA-------------C........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................CGT--------C-----TCC----CTT----------------------------------------------------------------TTGAGCGTATT-ATTCTGAA..........................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTGTTGTCCT-------CGC----------------TGCAG---CTGCA.................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GTGCGA----------------------------------GAGGAGAGAA-------------CAAGT....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGTCCT-------CGC----------------TGCAG---CTGCATTAC.............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GGTGCGA----------------------------------GAGGAGAGAA-------------C........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGTTGTCCT-------CGC----------------TGCAG---CTGC..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTATT-ATTCTGAAAGGTGCGA----------------------------------GAG.............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTCTGAAAGGTGCGA----------------------------------GAGGAGAGAA-------------CA.......................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ATT-ATTCTGAAAGGTGCGA----------------------------------GAGGA...........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................ACATTTC--TT------CGT--------C-----TCC----CTT----------------------------------------------------------------TTGAGC........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................GTATT-ATTCTGAAAGGTGCGA----------------------------------GAGG............................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TT----------------------------------------------------------------TTGAGCGTATT-ATTCTGAAA.........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCTACGAGCAACGCCAGCCAAACAGCTCAAGTGAAGTCCT-------CGT----------------TGCAG---CTGCATTGCATTACATTTC--TT------CGT--------C-----TCC----CTTTTA-----------------------------------------------A--------------------CATACGATTC-TAAGGTGCGA----------------------------------AAGAGA---A-------------CAAGTGGCAGAG-------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................GAAGTCCT-------CGT----------------TGCAG---CTGCATTG..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

dse_228

scaffold_23:627256-627313 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.2	-34.0	-33.7