dse_212

########################################################################################################################################################## CAGAACGTTGCAATCGTTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGGCGGCCAACACCGGACCCGGCCAGAAACTG *********************************(((((((((..(((((...(((((.(((...((((((........))))))..))).))))))))))..))))..)))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	M054 female body	V115 head	V114 embryo
.................................................................................ACTGGTAGCGTCTGGTGTGGCG...................................................	22	0	1	7.00	7	7	0	0	0
.................................................................................ACTGGTAGCGTCTGGTGTGGCGA..................................................	23	0	1	5.00	5	4	1	0	0
.................................................................................ACTGGTAGCGTCTGGTGTGGC....................................................	21	0	1	5.00	5	3	0	2	0
................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCC...............................................	27	0	1	3.00	3	3	0	0	0
.................................................................................ACTGGTAGCGTCTGGTGTGGCGAGCC...............................................	26	0	1	2.00	2	2	0	0	0
................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCCA..............................................	28	0	1	2.00	2	2	0	0	0
...................................................................................TGGTAGCGTCTGGTGTGGCG...................................................	20	0	1	2.00	2	1	0	1	0
................................................................................AACTGGTAGCGTCTGGTGTGGC....................................................	22	0	1	2.00	2	1	0	1	0
....................................................................................GGTAGCGTCTGGTGTGGCG...................................................	19	0	1	2.00	2	2	0	0	0
................................................................................AACTGGTAGCGTCTGGTGAGGCG...................................................	23	1	1	1.00	1	1	0	0	0
.....................................................................................GTAGCGTCTGGTGTGGCGAGCC...............................................	22	0	1	1.00	1	1	0	0	0
....................................................................................GGTAGCGTCTGGTGTGGCGAGC................................................	22	0	1	1.00	1	1	0	0	0
.................................................................................ACTGGTAGCGTCTGGTGTGGCGAG.................................................	24	0	1	1.00	1	0	1	0	0
............................................................................AACAAACTGGTAGCGTCTGG..........................................................	20	0	1	1.00	1	0	0	0	1
.................................................................................ACTGGTAGCGTCTGGTGTTGCG...................................................	22	1	1	1.00	1	1	0	0	0
.................................................................................ACTGGTAGCGTCTGGTGTGG.....................................................	20	0	1	1.00	1	1	0	0	0
..........................................................................................................................GGGCGGCCAACACCGGACCCG...........	21	0	1	1.00	1	0	1	0	0
.................................................................................................................................CAACACCGGACCCGGCCAGA.....	20	0	1	1.00	1	1	0	0	0
................................................................................AACTGGTAGCGTCTGGTGTGGCGAG.................................................	25	0	1	1.00	1	1	0	0	0
...................................................................................TGGTAGCGTCTGGTGTGGCGAT.................................................	22	1	1	1.00	1	1	0	0	0
...............................................................................................................AAAGGCTGGCAGGGCGGCCAACA....................	23	0	1	1.00	1	0	1	0	0
.................................................................................ACTGGTAGCGTCTGGTGTGGCAGCC................................................	25	3	1	1.00	1	1	0	0	0
....................................................................................GGTAGCGTCTGGTGTGGCGCGCC...............................................	23	1	1	1.00	1	1	0	0	0
.............................................................................................................CAAAAGGCTGGCAGGGCGGC.........................	20	0	1	1.00	1	0	1	0	0
...................................................................................................................GCTGGCAGGGCGGCCAACACCGGA...............	24	0	1	1.00	1	1	0	0	0
...........................................................................................................AACAAAAGGCTGGCAGGGCGGCCAAC.....................	26	0	1	1.00	1	1	0	0	0
.........................................................AGTCGTCAGTCAGTTGGCCAAC...........................................................................	22	0	1	1.00	1	1	0	0	0
......................................................................................TAGCGTCTGGTGTGGCGAGCCCCCA...........................................	25	2	1	1.00	1	1	0	0	0
...................................................................................TGGTAGCGTCTGGTGTGGTGAGCC...............................................	24	1	1	1.00	1	1	0	0	0
................................................................................AACTGGTAGCGTCTGGTGTGGCGAGC................................................	26	0	1	1.00	1	1	0	0	0
..................................................................................CTGGTAGCGTCTGGTGTGGCGAGCC...............................................	25	0	1	1.00	1	1	0	0	0
...........AATCGTTCGAGGGCCTCTGG...........................................................................................................................	20	0	1	1.00	1	1	0	0	0
............................................................................................................ACAAAAGGCTGGCAGGGCGGCC........................	22	0	1	1.00	1	1	0	0	0
..............................................................................................................AAAAGGCTGGCAGGGCGGC.........................	19	0	1	1.00	1	0	0	0	1
...AACGTTGCAATCGTTGGGC....................................................................................................................................	19	3	20	0.25	5	0	4	1	0
............................................................................................................ACAAAAGAATGGCAGGGC............................	18	2	8	0.13	1	0	1	0	0
...AACGTTGCCATCGTTCGGC....................................................................................................................................	19	3	20	0.05	1	0	1	0	0

GTCTTGCAACGTTAGCAAGCTCCCGGAGACCGAGCGAAAAACCGTCCGGCGCGCCGGTCAGCAGTCAGTCAACCGGTTGTTTGACCATCGCAGACCACACCGCTCGGTTGTTTTCCGACCGTCCCGCCGGTTGTGGCCTGGGCCGGTCTTTGAC *********************************(((((((((..(((((...(((((.(((...((((((........))))))..))).))))))))))..))))..)))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V115 head	V113 male body
.......................................................CGTCAGGAGTCAGTCGACCG...............................................................................	20	3	15	0.40	6	5	1	0
..........................................................................GGTTGATGGACCATCACAGA............................................................	20	3	11	0.36	4	3	1	0
.......................................................CGTCAGCAGTCAGTCGACCG...............................................................................	20	2	3	0.33	1	1	0	0
.........................................................TCAGGAGTCAGTCGACCG...............................................................................	18	2	10	0.30	3	2	0	1
............................................................................TTGATGGACCATCGCAGAAC..........................................................	20	3	11	0.09	1	0	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_7:506606-506759 +	dse_212	CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-AGAA-ACT----G
droSim2	2l:16427796-16427949 +		CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-AGAA-ACT----G
dm3	chr2L:16869409-16869562 +		CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGAG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-ACT----G
droEre2	scaffold_4845:7364102-7364255 -		CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCACGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCT----G
droYak3	2R:4235504-4235657 -		CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCT----G
droEug1	scf7180000408961:431368-431513 +		------------------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCAGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAA-AGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCT----A
droBia1	scf7180000301468:1039127-1039265 +		CTGAACG-----------CTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAA-AGGCTGGCAGGG-------------CGGCCAACACCGGA--C--------------------
droTak1	scf7180000415914:623771-623924 +		CTGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCTGGCC-CGAA-AGC----G
droEle1	scf7180000490579:479631-479779 -		T-GAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA---------
droRho1	scf7180000780103:108914-109066 -		T-GAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGA-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCC----A
droFic1	scf7180000454078:792835-792983 +		T-GAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CAGA---------
droKik1	scf7180000302472:139294-139444 +		GGGAACG-----------CTG-------------CACTCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAA-AGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGACACGGA--C------
droAna3	scaffold_12916:7429485-7429633 +		CGGCAAG-----------TTGCA--ATC------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGCG-------------TGGCCAACACCGGA--CTTGG----------------
droBip1	scf7180000396554:47199-47347 +		CAGCAAG-----------TTGCA--ATC------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CTTGG----------------
dp5	4_group3:2902716-2902866 -		CAGAGAG-----------AAG-------------C-AGCG---TTCGAGGGCCTCTGGTGCGCTTTTTGGCAGCCCGTGCGAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTTGCGAGCCAACAAAAGGCTGGCAG------------------CCAACACCGGA--CCGGACC--GGG-GCTACACG
droPer2	scaffold_1:4387277-4387427 -		CAGAGAG-----------AAG-------------C-AGCG---TTCGAGGGCCTCTGGTGCGCTTTTTGGCAGCCCGTGCGAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTTGCGAGCCAACAAAAGGCTGGCAG------------------CCAACACCGGA--CCGGACC--GGG-GCTACACG
droWil2	scf2_1100000004577:1252244-1252396 +		GACAACGACGACGACAAATT-----------------TCG--TTTCGAGGGCTTCTGGTTCGCTTTTTGGCAGCACAAACGAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTTTGGAGCCAACAAAAGGCTGGCAA------------------CCGTCACCGGTTGGCCGGA--------CC----G
droMoj3	scaffold_6500:21142713-21142862 -		A-CAACG-----------TC-GA--CTG------CTGCCG---GCTGAGGGCTGCTGCTGCTGCTGCTGGCTGACTG--CGAGCAGTCGTCAGTCAGTTGGCGAAGAAACTGGTAGCGTC-GGTGTTGCGAGCCAACAAAAGGCTGGCAG---------------CTGGCAGCTGGGCA--GCTGGCA-CA---GTC----A
droGri2	scaffold_15126:5912830-5913009 -		CAGCAGC-----------T-GTCTGCTGCTGCTGCTATTGCTGGCTGAGGGCTTCTGCTTCTGCTGTTGGCTGACTGC--GAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTC-GGTGTTGTGAGCCAACAAAAGGCTGGCAACTGGCAAACTGGCAGCTGGCAGCTGGGCA--GCTGGCA-CAGTTACC----G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-AGAA-ACT----G	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................ACTGGTAGCGTCTGGTGTGGCG........................................................................	22	1	7.00	7	0	7	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGA.......................................................................	23	1	5.00	5	1	4	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGC.........................................................................	21	1	5.00	5	0	3	0	2
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	27	1	3.00	3	0	3	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	26	1	2.00	2	0	2	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCCA...................................................................	28	1	2.00	2	0	2	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCG........................................................................	20	1	2.00	2	0	1	0	1
...........................................................................................................AACTGGTAGCGTCTGGTGTGGC.........................................................................	22	1	2.00	2	0	1	0	1
...............................................................................................................GGTAGCGTCTGGTGTGGCG........................................................................	19	1	2.00	2	0	2	0	0
................................................................................................................GTAGCGTCTGGTGTGGCGAGCC....................................................................	22	1	1.00	1	0	1	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGC.....................................................................	22	1	1.00	1	0	1	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAG......................................................................	24	1	1.00	1	1	0	0	0
.......................................................................................................AACAAACTGGTAGCGTCTGG...............................................................................	20	1	1.00	1	0	0	1	0
............................................................................................................ACTGGTAGCGTCTGGTGTGG..........................................................................	20	1	1.00	1	0	1	0	0
.....................................................................................................................................................GGG-------------CGGCCAACACCGGA--CCCG.................	21	1	1.00	1	1	0	0	0
.........................................................................................................................................................................CAACACCGGA--CCCGGCC-AGA..........	20	1	1.00	1	0	1	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAG......................................................................	25	1	1.00	1	0	1	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAT......................................................................	22	1	1.00	1	0	1	0	0
..........................................................................................................................................AAAGGCTGGCAGGG-------------CGGCCAACA............................	23	1	1.00	1	1	0	0	0
........................................................................................................................................CAAAAGGCTGGCAGGG-------------CGGC.................................	20	1	1.00	1	1	0	0	0
..............................................................................................................................................GCTGGCAGGG-------------CGGCCAACACCGGA--.....................	24	1	1.00	1	0	1	0	0
......................................................................................................................................AACAAAAGGCTGGCAGGG-------------CGGCCAAC.............................	26	1	1.00	1	0	1	0	0
....................................................................................AGTCGTCAGTCAGTTGGCCAAC................................................................................................	22	1	1.00	1	0	1	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	26	1	1.00	1	0	1	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	25	1	1.00	1	0	1	0	0
...................................AATCG---TTCGAGGGCCTCTGG................................................................................................................................................	20	1	1.00	1	0	1	0	0
.......................................................................................................................................ACAAAAGGCTGGCAGGG-------------CGGCC................................	22	1	1.00	1	0	1	0	0
.........................................................................................................................................AAAAGGCTGGCAGGG-------------CGGC.................................	19	1	1.00	1	0	0	1	0

droSim2

CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-AGAA-ACT----G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................CAACACCGGA--CCCGGCC-AGAA-A.......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................G---TTCGAGGGCCTCTGGCT..............................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................GCCAACAAACTGGTAGCGTCTGGTG.............................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CCAGTCGTCAGTCAGTTGGCC...................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GGCTGGCAGGG-------------CGGCCAACAC...........................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GCAGGG-------------CGGCCAACACCGGA--CCCGGCC-.............	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCCAAC.................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGAG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-ACT----G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................TGGTGTGGCGAGCCAACA................................................................	18	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCG........................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................CCGGA--CCCGGCC-CGAA-ACT----.	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCG........................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AAAGGCTGGCAGAG-------------CGGCCAACA............................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGA--CCCGGCC-CGAA-ACT----.	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CGTCTGGTGTGGCGAGCC....................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................GTCTGGTGTGGCGAGCCAAC.................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AGTCAGTTGGCCAACAAACT...........................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GGCCAACAAACTGGTAGCGTCT.................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGG.........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CCAGTCGTCAGTCAGTTGG.....................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................G---TTCGAGGGCCTCTGGCTCGCTT.........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAAAGGCTGGCAGAG-------------CGGC.................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................GCCAACAAACTGGTAGCGTCTGGTGTG...........................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CGTCAGTCAGTTGGCCAACAAA.............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCATC......................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCACGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCT----G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCG........................................................................	23	1	4.00	4	2	0	0	0	2	0	0
..........................................................................................................................................................................AACACCGGA--CCCGGCC-CGAA-TC......	22	1	3.00	3	3	0	0	0	0	0	0
..........................................................................................................AAACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	28	1	3.00	3	2	0	0	0	1	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	27	1	3.00	3	2	0	0	0	1	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	26	1	3.00	3	1	0	0	0	2	0	0
..........................................................................................................AAACTGGTAGCGTCTGGTGTGGCG........................................................................	24	1	2.00	2	1	0	0	0	0	1	0
..........................................................................................................................................AAAGGCTGGCAGGG-------------CGGCCAAC.............................	22	1	2.00	2	1	0	0	0	0	1	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGA.......................................................................	24	1	2.00	2	2	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGCC....................................................................	24	1	2.00	2	2	0	0	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	25	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................AGTCAGTTGGCCAACAAACT...........................................................................................	20	1	2.00	2	2	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGC.........................................................................	19	1	2.00	2	1	0	0	0	0	1	0
...................................................................................................................GCGTCTGGTGTGGCGAGCC....................................................................	19	1	2.00	2	2	0	0	0	0	0	0
..........................................................................................................................................AAAGGCTGGCAGGG-------------CGGCC................................	19	1	2.00	2	2	0	0	0	0	0	0
..........................................................................................................................................AAAGGCTGGCAGGG-------------CGGC.................................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTGGCGAGCCA...................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................CAACAAAAGGCTGGCAGGG-------------C....................................	20	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTGGCGAGC.....................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTGGCGAGCCAACAA...............................................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................AAGGCTGGCAGGG-------------CGGCCAACACC..........................	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................GGCCAACACCGGA--CCCGGCC-.............	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................AACAAACTGGTAGCGTCTGGTGTGGCGA.......................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................CAACACCGGA--CCCGGCC-CGAA-TC......	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................CAAAAGGCTGGCAGGG-------------CGGCCAAC.............................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................CTGGCAGGG-------------CGGCCAACACCGGA--.....................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGT............................................................................	19	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................AACAAAAGGCTGGCAGGG-------------CGGCCAACA............................	27	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................AACAAAAGGCTGGCAGGG-------------CGGCC................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................AAGGCTGGCAGGG-------------CGGCCAACA............................	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCG........................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................CACCGGA--CCCGGCC-CGAA-TC......	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................CGAGCCAACAAAAGGCTGGCAGGG-------------C....................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGC.........................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................AGCGTCTGGTGTGGCGAGCCAACA................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................CCGGA--CCCGGCC-CGAA-TC......	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................CGAGCCAACAAAAGGCTGGCAGGG-------------CA...................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................GAGCCAACAAAAGGCTGGCAGGG-------------C....................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCCAACA................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................ACACCGGA--CCCGGCC-CGAA-TCT----G	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................AGCGTCTGGTGTGGCGAG......................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................ACACCGGA--CCCGGCC-CGAA-TC......	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGCCAACA................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCCAA..................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................AGGCTGGCAGGG-------------CGGCCAAC.............................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................CCAACACCGGA--CCCGGCC-CGA..........	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGC.....................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCG........................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....................................................................................AGTCGTCAGTCAGTTGGCCAA.................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................CGTCTGGTGTGGCGAGCCAACA................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................AAGGCTGGCAGGG-------------CGGCCAAC.............................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................GGCCACGCGGCCAGTCGTCAGT............................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................GGCTGGCAGGG-------------CGGCCAACACCG.........................	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGCG.........................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................AACAAAAGGCTGGCAGGG-------------CGGCCAACACC..........................	29	1	1.00	1	0	0	0	0	0	1	0
......G-----------TTG-------------CAATCG---TTCGAGGGC......................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................................TCG---TTCGAGGGCCTCTGGCT..............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAG......................................................................	24	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................ACAAACTGGTAGCGTCTGGTGTGGCGA.......................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................ACAAACTGGTAGCGTCTGGTGTGGCG........................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................AACACCGGA--CCCGGCC-CGAA-........	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................ACAAACTGGTAGCGTCTGGTGTG...........................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................CCGGA--CCCGGCC-CGAA-TCT----.	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................CGTCTGGTGTGGCGAGCCAAC.................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................CG---TTCGAGGGCCTCTGGCTCGCT..........................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................................................CGCTTTTTGGCAGGCCACGCG.........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGCCA...................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................GCTGGCAGGG-------------CGGCCAACA............................	19	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................CCGGA--CCCGGCC-CGAA-TCT----G	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................GTTGGCCAACAAACTGGTA.......................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................GCAGGG-------------CGGCCAACACCG.........................	18	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCG........................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGG..........................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................AACAAAAGGCTGGCAGGG-------------.....................................	18	2	0.50	1	0	0	0	0	1	0	0

droYak3

CAGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCT----G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................TGGTAGCGTCTGGTGTGGCG........................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................CAAACTGGTAGCGTCTGGTGTGGCG........................................................................	25	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCG........................................................................	22	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGCC....................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCG........................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGC.....................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGC.........................................................................	22	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCG........................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGC.........................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................ACAAACTGGTAGCGTCTGGTGTGGC.........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCCAACAA...............................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................AGCGTCTGGTGTGGCGAGCCAACA................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................TGGCCAACAAACTGGTAGCGTCTGGTG.............................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................GGCTGGCAGGG-------------CGGCCAACA............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................AAACTGGTAGCGTCTGGTGTGGCG........................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TCTGGTGTGGCGAGCCAACAAA..............................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGT............................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................CAAACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCCAACA................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................GTTGGCCAACAAACTGGTAGCGTCTGGT..............................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................TGGTGTGGCGAGCCAACAAA..............................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................CAACAAACTGGTAGCGTCTGGT..............................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................ACAAACTGGTAGCGTCTGGTGTGGCG........................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................GCAGGG-------------CGGCCAACACCGGA--.....................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................GG-------------CGGCCAACACCGGA--CCCGGCC-C............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCC....................................................................	17	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGC.........................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................CAACAAACTGGTAGCGTCTGGTGT............................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GCGTCTGGTGTGGCGAGC.....................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................AGCGTCTGGTGTGGCGAGCC....................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................CAACAAACTGGTAGCGTC..................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGCC....................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGG..........................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................TTG-------------CAATCG---TTCGAGGGCC.....................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

------------------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCAGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAA-AGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCT----A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGAACG-----------CTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAA-AGGCTGGCAGGG-------------CGGCCAACACCGGA--C--------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCTGGCC-CGAA-AGC----G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-GAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CGAA---------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-GAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGA-------------CGGCCAACACCGGA--CCCGGCC-CGAA-TCC----A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-GAACG-----------TTG-------------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAACAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGCC-CAGA---------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGAACG-----------CTG-------------CACTCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCGCGGCCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAA-AGGCTGGCAGGG-------------CGGCCAACACCGGA--CCCGGACACGGA--C------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGGCAAG-----------TTGCA--ATC------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGCG-------------TGGCCAACACCGGA--CTTGG----------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGCC....................................................................	23	1	9.00	9	4	0	0	0	4	1
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGC.....................................................................	22	1	6.00	6	3	0	0	0	3	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCG........................................................................	20	1	6.00	6	3	0	0	0	2	1
..........................................................................................................................................AAAGGCTGGCAGCG-------------TGGCCAACA............................	23	1	5.00	5	3	0	0	1	1	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGC.....................................................................	23	1	5.00	5	2	0	0	0	3	0
..........................................................................................................................................AAAGGCTGGCAGCG-------------TGGCC................................	19	1	5.00	5	4	0	0	1	0	0
..........................................................................................................................................AAAGGCTGGCAGCG-------------TGGCCAACACC..........................	25	1	5.00	5	3	0	0	0	0	2
...............................................................................................................GGTAGCGTCTGGTGTGGCG........................................................................	19	1	4.00	4	2	0	0	0	2	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	26	1	4.00	4	1	0	0	0	3	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGAGCCA...................................................................	26	1	3.00	3	0	0	0	0	3	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCG........................................................................	22	1	3.00	3	1	0	0	0	2	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCG........................................................................	23	1	3.00	3	0	0	0	0	0	3
..........................................................................................................................................AAAGGCTGGCAGCG-------------TGGCCA...............................	20	1	3.00	3	3	0	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGC.........................................................................	20	1	3.00	3	1	0	0	1	1	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	26	1	3.00	3	1	0	0	0	2	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGAGCC....................................................................	24	1	3.00	3	3	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGA.......................................................................	23	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................GGCAGCG-------------TGGCCAACACCGGA--CT...................	23	1	2.00	2	2	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTGGCGAGCC....................................................................	19	1	2.00	2	2	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGC.........................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................AGCGTCTGGTGTGGCGAGCCAACA................................................................	24	1	2.00	2	2	0	0	0	0	0
................................................................................................................GTAGCGTCTGGTGTGGCGAGCCA...................................................................	23	1	2.00	2	1	0	0	0	1	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	25	1	2.00	2	1	0	0	0	1	0
................................................................................................GTTGGCCAAGAAACTGGTAGCGTCT.................................................................................	25	1	2.00	2	1	1	0	0	0	0
..................................................................................................................AGCGTCTGGTGTGGCGAGC.....................................................................	19	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................GCTGGCAGCG-------------TGGCCAACACCGGA--CT...................	26	1	2.00	2	2	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	25	1	2.00	2	2	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGAGCC....................................................................	27	1	2.00	2	0	0	0	1	0	1
...........................................................................................................AACTGGTAGCGTCTGGTGTGGC.........................................................................	22	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................CTGGCAGCG-------------TGGCCAACACCGGA--CT...................	25	1	2.00	2	0	0	0	0	0	2
........................................................................................................AGAAACTGGTAGCGTCTGGTGTGGCG........................................................................	26	1	2.00	2	0	0	0	0	0	2
..........................................................................................................AAACTGGTAGCGTCTGGTGTGGCG........................................................................	24	1	2.00	2	1	0	0	0	0	1
.......................................................................................CGTCAGTCAGTTGGCCAAG................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................AAAAGGCTGGCAGCG-------------TGGCCA...............................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................GTAGCGTCTGGTGTGGCGAGC.....................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................AAGAAACTGGTAGCGTCTGGT..............................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................GGCTGGCAGCG-------------TGGCCAACACC..........................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGA.......................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................GTCTGGTGTGGCGAGCCA...................................................................	18	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................AAGGCTGGCAGCG-------------TGGCCAACACC..........................	24	1	1.00	1	0	0	0	0	0	1
..........................................................................................................AAACTGGTAGCGTCTGGT..............................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTGGCGAGC.....................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................CAACAAAAGGCTGGCAGCG-------------T....................................	20	1	1.00	1	0	0	1	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGCCAACA................................................................	27	1	1.00	1	0	0	0	0	1	0
..................................................................................................................AGCGTCTGGTGTGGCGAGCCA...................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................AAAAGGCTGGCAGCG-------------TGGCCAACAC...........................	25	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................GTCTGGTGTGGCGAGCCAAC.................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................................................................................................AGCGTCTGGTGTGGCGAGCC....................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................ACAAAAGGCTGGCAGCG-------------TGGCCAAC.............................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................AACAAAAGGCTGGCAGCG-------------TGGCC................................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGCGAGCCA...................................................................	27	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................AAAGGCTGGCAGCG-------------TGGCCAACAC...........................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGTGGC.........................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................ACAAAAGGCTGGCAGCG-------------TGGCCAACA............................	26	1	1.00	1	0	0	0	0	0	1
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGCCAAC.................................................................	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................GTAGCGTCTGGTGTGGCGAGCC....................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGA.......................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................AAGGCTGGCAGCG-------------TGGCCA...............................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................AGGCTGGCAGCG-------------TGGCCAACA............................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................ACAAAAGGCTGGCAGCG-------------TGGCCA...............................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................TCAGTTGGCCAAGAAACTGGTAG......................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................AAACTGGTAGCGTCTGGTGTGGCGAGC.....................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................AAAAGGCTGGCAGCG-------------TGGCC................................	20	1	1.00	1	0	0	0	0	1	0
................................................................................................................GTAGCGTCTGGTGTGGCGAGCCC...................................................................	23	1	1.00	1	0	0	0	1	0	0
....................................................................................................................................CCAACAAAAGGCTGGCAGCG-------------TGGCC................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTGGCGA.......................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGC.........................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................ACTGGTAGCGTCTGGTGT............................................................................	18	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................AAAGGCTGGCAGCG-------------TGGC.................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................GCG-------------TGGCCAACACCGGA--CT...................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGGCGT.......................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGAG......................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................AACAAAAGGCTGGCAGCG-------------TGGCCA...............................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................TTGGCCAAGAAACTGGTAG......................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTGGCGAGCCA...................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................GCGAGCCAACAAAAGGCTGGCAGCG-------------TGGC.................................	29	1	1.00	1	0	1	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTGGCGA.......................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTGG..........................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

CAGCAAG-----------TTGCA--ATC------CAATCG---TTCGAGGGCCTCTGGCTCGCTTTTTGGCAGGCCGCACGGCCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGGG-------------CGGCCAACACCGGA--CTTGG----------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGAGAG-----------AAG-------------C-AGCG---TTCGAGGGCCTCTGGTGCGCTTTTTGGCAGCCCGTGCGAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTTGCGAGCCAACAAAAGGCTGGCAG------------------CCAACACCGGA--CCGGACC--GGG-GCTACACG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................G------------------CCAACACCGGA--CCGGACC--GG..........	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................CACCGGA--CCGGACC--GGG-GCTAC...	22	1	2.00	2	0	1	0	0	0	1	0	0	0	0
.............................................................................................................................................GGCTGGCAG------------------CCAACACCGGA--CCGGACC--G...........	28	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACACCGGA--CCGGACC--GGG-GCTACAC.	25	1	2.00	2	0	1	0	1	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTTGCG........................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.................................................................................................................................................................................GA--CCGGACC--GGG-GCTACAC.	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TCTGGTGTTGCGAGCCAACA................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................GAAACTGGTAGCGTCTGGTGTT...........................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAACACCGGA--CCGGACC--GGG-G.......	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTTGCGAGC.....................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTTGCG........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................AAACTGGTAGCGTCTGGTG.............................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................GCCAAGAAACTGGTAGCGTCT.................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GTTGGCCAAGAAACTGGTAGCGTCTGG...............................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................TGGTAGCGTCTGGTGTTGCGAGCCAACA................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TGGCAG------------------CCAACACCGGA--CCGGA................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACACCGGA--CCGGACC--GGG-GCTAC...	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................GTAGCGTCTGGTGTTGCGAGCCAACA................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................GCTGGCAG------------------CCAACACCGGA--CCGGAC...............	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTTGCGAGCCAACAAA..............................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTTGCGAGCCA...................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................GGTAGCGTCTGGTGTTGCG........................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGA--CCGGACC--GGG-GCTAC...	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................AG------------------CCAACACCGGA--CCGGACC--GGG-G.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GA--CCGGACC--GGG-GCTACACG	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................AAACTGGTAGCGTCTGGTGTTGC.........................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................CACCGGA--CCGGACC--GGG-GCTACACG	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGA--CCGGACC--GGG-GCTACAC.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................GCGTCTGGTGTTGCGAGCCAACA................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

CAGAGAG-----------AAG-------------C-AGCG---TTCGAGGGCCTCTGGTGCGCTTTTTGGCAGCCCGTGCGAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTTGCGAGCCAACAAAAGGCTGGCAG------------------CCAACACCGGA--CCGGACC--GGG-GCTACACG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................AGCGTCTGGTGTTGCGAGC.....................................................................	19	1	2.00	2	2	0	0	0	0	0
.........................................................................................................GAAACTGGTAGCGTCTGGTGTT...........................................................................	22	1	2.00	2	0	0	0	0	0	2
..............................................................................................................................................................................CCGGA--CCGGACC--GGG-GCTACACG	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................GCCAAGAAACTGGTAGCGTCTGGT..............................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................GGCAG------------------CCAACACCGGA--CCG..................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................CCGGA--CCGGACC--GGG-GCTACA..	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................G------------------CCAACACCGGA--CCGGACC--............	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................GTTGCGAGCCAACAAAAGGCT.........................................................	21	1	1.00	1	0	0	1	0	0	0
...........................................................................................................AACTGGTAGCGTCTGGTGTTGCG........................................................................	23	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................TGGCAG------------------CCAACACCGGA--CCGGA................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................CACCGGA--CCGGACC--GGG-GCTA....	21	1	1.00	1	0	0	0	0	1	0
....................................................................................................................CGTCTGGTGTTGCGAGCCAACA................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................CTGGTAGCGTCTGGTGTTGCGAGCC....................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................TGGTAGCGTCTGGTGTTGCG........................................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

GACAACGACGACGACAAATT-----------------TCG--TTTCGAGGGCTTCTGGTTCGCTTTTTGGCAGCACAAACGAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTCTGGTGTTTGGAGCCAACAAAAGGCTGGCAA------------------CCGTCACCGGTTGGCCGGA--------CC----G	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................GTCACCGGTTGGCCGGA--------CC----.	19	1	5.00	5	5	0	0	0	0
.................................................................................................................TAGCGTCTGGTGTTTGGAGCCA...................................................................	22	1	1.00	1	1	0	0	0	0
..................................................................................................................AGCGTCTGGTGTTTGGAGC.....................................................................	19	1	1.00	1	0	0	0	0	1
....................................................................................................................................................AA------------------CCGTCACCGGTTGGCCGGA--------C......	22	1	1.00	1	1	0	0	0	0
....................................................................................AGTCGTCAGTCAGTTGGCCA..................................................................................................	20	1	1.00	1	0	0	1	0	0

droMoj3

A-CAACG-----------TC-GA--CTG------CTGCCG---GCTGAGGGCTGCTGCTGCTGCTGCTGGCTGACTG--CGAGCAGTCGTCAGTCAGTTGGCGAAGAAACTGGTAGCGTC-GGTGTTGCGAGCCAACAAAAGGCTGGCAG---------------CTGGCAGCTGGGCA--GCTGGCA-CA---GTC----A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................GAGCCAACAAAAGGCTGGCAG---------------CTG..................................	24	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................AAAAGGCTGGCAG---------------CTGGCA...............................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................TGTTGCGAGCCAACAAAAGGCT.........................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................AAGAAACTGGTAGCGTC-GGTGTTGC.........................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................AACTGGTAGCGTC-GGTGTTGC.........................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................GTTGGCGAAGAAACTGGTAGCGTC-.................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................................................................................................AAACTGGTAGCGTC-GGTG.............................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................AAACTGGTAGCGTC-GGTGTTGCG........................................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................GTCAGTTGGCGAAGAAACTGGT........................................................................................	22	1	1.00	1	0	0	0	0	0	1

droGri2

CAGCAGC-----------T-GTCTGCTGCTGCTGCTATTGCTGGCTGAGGGCTTCTGCTTCTGCTGTTGGCTGACTGC--GAGCAGTCGTCAGTCAGTTGGCCAAGAAACTGGTAGCGTC-GGTGTTGTGAGCCAACAAAAGGCTGGCAACTGGCAAACTGGCAGCTGGCAGCTGGGCA--GCTGGCA-CAGTTACC----G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................AACTGGCAGCTGGCAGCTGGGCA--.....................	23	1	1.00	1	1	0

dse_212

scaffold_7:506656-506709 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.0	-34.5	-34.2