ID:

dse_211

 Coordinate:

scaffold_14:872002-872090 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.8 -45.4 -45.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
G5_DMLINEJockey+

Sense Strand Reads

TGCTTCTGGCTGCCTTCTCATGGATACCCATCCCCTGAGCGGACACGATTGGCTGAACAACAGGCTAATCGCTTCCATCTTGGAAAGCTATCTTTTGCGACCACCCTAAGAGGCCATTAGCTTGTTGTTCAGCCACCTCTACTAACTCCAATCCAACTACCAACCAGGACTTCAAACTGGAACAGCCTA

***********************************.(((..........((((((((((((((((((((.(((((.....(((...((........))..)))......))))).))))))))))))))))))))..........))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 M054

female body

 V115

head

 V113

male body
....................................................................................................................TTAGCTTGTTGTTCAGCCACCT................................................... 22 0 1 1234.00 1234 599 581 27 27
..................................................................................................................CATTAGCTTGTTGTTCAGCCAC..................................................... 22 0 1 786.00 786 340 425 12 9
..................................................................................................................CATTAGCTTGTTGTTCAGCCA...................................................... 21 0 1 690.00 690 481 177 13 19
....................................................................................................................TTAGCTTGTTGTTCAGCCACC.................................................... 21 0 1 469.00 469 300 143 18 8
...................................................................................................................ATTAGCTTGTTGTTCAGCCACC.................................................... 22 0 1 197.00 197 113 48 13 23
..................................................................................................................CATTAGCTTGTTGTTCAGCCACA.................................................... 23 1 1 194.00 194 143 48 3 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCT................................................... 21 0 1 156.00 156 84 64 4 4
..................................................................................................................CATTAGCTTGTTGTTCAGCC....................................................... 20 0 1 128.00 128 99 26 2 1
....................................................................................................................TTAGCTTGTTGTTCAGCCACCA................................................... 22 1 1 124.00 124 69 52 2 1
..................................................................................................................CATTAGCTTGTTGTTCAGCCACAA................................................... 24 2 1 118.00 118 43 72 3 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCAC..................................................... 21 0 1 100.00 100 41 55 0 4
....................................................................................................................TTAGCTTGTTGTTCAGCCAC..................................................... 20 0 1 84.00 84 46 36 1 1
...................................................................................................................ATTAGCTTGTTGTTCAGCCA...................................................... 20 0 1 70.00 70 40 19 5 6
....................................................................................................................TTAGCTTGTTGTTCAGCCACA.................................................... 21 1 1 68.00 68 53 10 4 1
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTA.................................................. 23 1 1 62.00 62 27 33 2 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACC.................................................... 20 0 1 53.00 53 35 18 0 0
..................................................GGCTGAACAACAGGCTAATCG...................................................................................................................... 21 0 1 49.00 49 8 41 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACC.................................................... 23 0 1 43.00 43 19 20 3 1
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTC.................................................. 22 0 1 43.00 43 11 30 1 1
..................................................................................................................CATTAGCTTGTTGTTCAGCCAA..................................................... 22 1 1 39.00 39 18 18 2 1
....................................................................................................................TTAGCTTGTTGTTCAGCCACAA................................................... 22 2 1 35.00 35 25 7 2 1
..................................................................................................................CATTAGCTTGTTGTTCAGCCAT..................................................... 22 1 1 35.00 35 19 13 0 3
...................................................................................................................ATTAGCTTGTTGTTCAGCCACCA................................................... 23 1 1 32.00 32 18 13 1 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACA.................................................... 22 1 1 32.00 32 18 10 1 3
..................................................................................................................CATTAGCTTGTTGTTCAGC........................................................ 19 0 1 29.00 29 21 7 0 1
....................................................................................................................TTAGCTTGTTGTTCAGCCA...................................................... 19 0 1 27.00 27 17 8 2 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTA.................................................. 22 1 1 24.00 24 16 7 1 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACT.................................................... 22 1 1 17.00 17 7 3 1 6
..................................................GGCTGAACAACAGGCTAATC....................................................................................................................... 20 0 1 16.00 16 0 16 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCC....................................................... 19 0 1 16.00 16 16 0 0 0
...................................................GCTGAACAACAGGCTAATCG...................................................................................................................... 20 0 1 15.00 15 2 13 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACCA................................................... 24 1 1 13.00 13 5 7 1 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTAA................................................. 24 2 1 12.00 12 4 8 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCA................................................... 21 1 1 12.00 12 8 4 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTCA................................................. 23 1 1 10.00 10 5 5 0 0
..................................................................................................................CATTAGCTTGTTGTTCAG......................................................... 18 0 1 10.00 10 9 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTT.................................................. 22 1 1 10.00 10 1 9 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACT.................................................... 21 1 1 10.00 10 6 2 1 1
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTT.................................................. 23 1 1 9.00 9 2 4 1 2
...................................................................................................................ATTAGCTTGTTGTTCAGCCACAA................................................... 23 2 1 9.00 9 6 3 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTC.................................................. 23 0 1 9.00 9 1 8 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCAC..................................................... 19 0 1 9.00 9 5 4 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACTA................................................... 22 2 1 9.00 9 5 1 1 2
....................................................................................................................TTAGCTTGTTGTTCAGCCACCC................................................... 22 1 1 8.00 8 4 1 3 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCAAAA................................................... 24 3 1 8.00 8 1 7 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCAA.................................................. 23 2 1 8.00 8 3 4 1 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACT.................................................... 23 1 1 8.00 8 4 2 1 1
....................................................................................................................TTAGCTTGTTGTTCAGCCACCAAA................................................. 24 3 1 7.00 7 3 3 1 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCAAA.................................................... 23 2 1 7.00 7 3 3 1 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACAAA.................................................. 25 3 1 7.00 7 3 4 0 0
..................................................GGCTGAACAACAGGCTAATCGC..................................................................................................................... 22 0 1 6.00 6 0 6 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACCT................................................... 23 0 1 6.00 6 4 1 0 1
.................................................TGGCTGAACAACAGGCTAATCG...................................................................................................................... 22 0 1 6.00 6 0 6 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTAA................................................. 23 2 1 6.00 6 2 4 0 0
...................................................GCTGAACAACAGGCTAATCGC..................................................................................................................... 21 0 1 5.00 5 0 5 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTAAA................................................ 25 2 1 5.00 5 1 4 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACA.................................................... 20 1 1 5.00 5 2 3 0 0
....................................................................................................................TTACCTTGTTGTTCAGCCACCT................................................... 22 1 1 5.00 5 1 4 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACCAA.................................................. 24 2 1 5.00 5 2 3 0 0
....................................................................................................................TTAGCTTGTTGTTCAGTCACC.................................................... 21 1 1 4.00 4 3 0 1 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCG................................................... 22 1 1 4.00 4 3 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGTCA...................................................... 21 1 1 4.00 4 4 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCGC..................................................... 22 1 1 4.00 4 2 1 0 1
..................................................................................................................CATTAGCTTGTTGTTCAGCCATA.................................................... 23 2 1 4.00 4 2 2 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACCT................................................... 24 0 1 4.00 4 3 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCC....................................................... 18 0 1 4.00 4 4 0 0 0
......................................................................................................................AGCTTGTTGTTCAGCCACCT................................................... 20 0 1 4.00 4 1 3 0 0
....................................................................................................................TTATCTTGTTGTTCAGCCACCT................................................... 22 1 1 4.00 4 1 3 0 0
....................................................................................................................TTAGCTTGTTGCTCAGCCACCT................................................... 22 1 1 4.00 4 2 2 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCAA..................................................... 20 1 2 3.50 7 4 3 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTAAA................................................ 24 2 1 3.00 3 1 2 0 0
..................................................................................................................CATTAGATTGTTGTTCAGCCAC..................................................... 22 1 1 3.00 3 0 3 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCAT..................................................... 20 1 1 3.00 3 3 0 0 0
..................................................................................................................TATTAGCTTGTTGTTCAGCCA...................................................... 21 1 1 3.00 3 2 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACTT................................................... 22 1 1 3.00 3 1 0 0 2
.................................................TGGCTGAACAACAGGCTAATC....................................................................................................................... 21 0 1 3.00 3 0 3 0 0
....................................................................................................................TTAGATTGTTGTTCAGCCACCT................................................... 22 1 1 3.00 3 0 3 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGC........................................................ 18 0 1 3.00 3 1 1 1 0
...................................................GCTGAACAACAGGCTAATC....................................................................................................................... 19 0 1 3.00 3 0 3 0 0
..................................................................................................................CATTAGATTGTTGTTCAGCCA...................................................... 21 1 1 3.00 3 1 2 0 0
....................................................................................................................TTAGCCTGTTGTTCAGCCACCT................................................... 22 1 1 3.00 3 2 1 0 0
..................................................................................................................CATTACCTTGTTGTTCAGCCAC..................................................... 22 1 1 3.00 3 2 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCC................................................... 21 1 1 3.00 3 3 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCA...................................................... 18 0 1 3.00 3 2 1 0 0
..................................................................................................................CGTTAGCTTGTTGTTCAGCCAC..................................................... 22 1 1 3.00 3 1 2 0 0
..................................................................................................................CATTAGCTTGTTGTTTAGCCA...................................................... 21 1 1 3.00 3 3 0 0 0
....................................................................................................................TTAACTTGTTGTTCAGCCACCT................................................... 22 1 1 3.00 3 2 1 0 0
..................................................................................................................CATTAGCTTGTTTTTCAGCCAC..................................................... 22 1 1 3.00 3 0 3 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACTA................................................... 24 2 1 3.00 3 0 2 1 0
..................................................................................................................CATCAGCTTGTTGTTCAGCCAC..................................................... 22 1 1 2.00 2 1 1 0 0
....................................................................................................................TTAGCTTGTTGGTCAGCCACCT................................................... 22 1 1 2.00 2 0 2 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCATT.................................................... 23 2 1 2.00 2 1 0 0 1
....................................................................................................................TTAGCTTGTTGTTTAGCCACCT................................................... 22 1 1 2.00 2 1 1 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACAAA.................................................. 24 3 1 2.00 2 1 1 0 0
..................................................................................................................CATCAGCTTGTTGTTCAGCCA...................................................... 21 1 1 2.00 2 2 0 0 0
.................................................................................................................CCATTAGCTTGTTGTTCAGCCAC..................................................... 23 0 1 2.00 2 0 2 0 0
...................................................................................................................CTTAGCTTGTTGTTCAGCCACCT................................................... 23 1 1 2.00 2 1 1 0 0
....................................................................................................................TTAGTTTGTTGTTCAGCCACCT................................................... 22 1 1 2.00 2 1 1 0 0
....................................................................................................................TTAGCTTGTTATTCAGCCACCT................................................... 22 1 1 2.00 2 1 1 0 0
..................................................................................................................CATTAGTTTGTTGTTCAGCCAC..................................................... 22 1 1 2.00 2 2 0 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCAA..................................................... 21 1 2 2.00 4 0 3 0 1
..................................................................................................................CATTAGCTTGTTGTTCAGCCACG.................................................... 23 1 1 2.00 2 0 1 1 0
..................................................GGCTGAACAACAGGCTAAT........................................................................................................................ 19 0 1 2.00 2 1 1 0 0
....................................................................................................................TTAGCTTGCTGTTCAGCCACCT................................................... 22 1 1 2.00 2 2 0 0 0
..................................................................................................................CATTAGCTTGTTTTTCAGCCA...................................................... 21 1 1 2.00 2 0 1 0 1
..................................................................................................................CATTAGTTTGTTGTTCAGCCA...................................................... 21 1 1 2.00 2 2 0 0 0
..................................................................................................................TATTAGCTTGTTGTTCAGCCAC..................................................... 22 1 1 2.00 2 0 2 0 0
..................................................................................................................CATTGGCTTGTTGTTCAGCCACA.................................................... 23 2 1 2.00 2 2 0 0 0
.................................................TGGCTGAACAACAGGCTA.......................................................................................................................... 18 0 1 2.00 2 1 1 0 0
...................................................................................................................TTTAGCTTGTTGTTCAGCCACCT................................................... 23 1 1 2.00 2 0 2 0 0
..................................................................................................................CATTATCTTGTTGTTCAGCCA...................................................... 21 1 1 2.00 2 1 1 0 0
..................................................................................................................CATTAGCTTGTTGCTCAGCCA...................................................... 21 1 1 2.00 2 2 0 0 0
....................................................................................................................TTATCTTGTTGTTCAGCCACC.................................................... 21 1 1 2.00 2 2 0 0 0
...................................................................................................................ATTATCTTGTTGTTCAGCCAC..................................................... 21 1 1 2.00 2 1 1 0 0
....................................................................................................................TTAGCTTGTTGGTCAGCCACCA................................................... 22 2 1 2.00 2 0 2 0 0
.................................................TGGCTGAACAACAGGCTAA......................................................................................................................... 19 0 1 2.00 2 2 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCAAAA................................................ 24 3 1 2.00 2 2 0 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCTACCT................................................... 22 1 1 2.00 2 1 1 0 0
......................................................................................................................AGCTTGTTGTTCAGCCACCAAAA................................................ 23 3 1 2.00 2 0 2 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCC...................................................... 21 1 1 2.00 2 1 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTCT................................................. 23 0 1 2.00 2 0 2 0 0
..................................................................................................................CATTCGCTTGTTGTTCAGCCAC..................................................... 22 1 1 2.00 2 0 2 0 0
....................................................................................................................GTAGCTTGTTGTTCAGCCACCT................................................... 22 1 1 2.00 2 0 2 0 0
....................................................................................................................TTAGCTTGTTGTTCATCCACC.................................................... 21 1 1 2.00 2 1 0 0 1
.................................................................................................................CCATTAGCTTGTTGTTCAGCCA...................................................... 22 0 1 2.00 2 1 1 0 0
........................................................................................................................CTTGTTGTTCAGCCACCT................................................... 18 0 1 2.00 2 0 2 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACT.................................................... 20 1 1 2.00 2 2 0 0 0
..................................................................................................................CATTATCTTGTTGTTCAGCCAC..................................................... 22 1 1 2.00 2 0 2 0 0
...................................................................................................................CTTAGCTTGTTGTTCAGCCACC.................................................... 22 1 1 2.00 2 1 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACAAA.................................................. 23 3 1 2.00 2 1 0 1 0
...................................................................................................................ATTAGCTTGCTGTTCAGCCACC.................................................... 22 1 1 2.00 2 1 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGTCACCT................................................... 22 1 1 2.00 2 2 0 0 0
....................................................................................................................TTAGCTTGTTGTTCTGCCACCA................................................... 22 2 1 1.00 1 0 1 0 0
..................................................................................................................CATTAACTTGTTGTTCAGCCAC..................................................... 22 1 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTAAC................................................ 24 3 1 1.00 1 1 0 0 0
...................................................................................................................GTTAGCTTGTTGTTCAGCCA...................................................... 20 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCCGCCACCT................................................... 22 1 1 1.00 1 1 0 0 0
.................................................AGGCTGAACAACAGGCTAATCG...................................................................................................................... 22 1 1 1.00 1 0 1 0 0
.................................................................................................................TCATTAGCTTGTTGTTCAGCCACA.................................................... 24 2 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCATCCACCT................................................... 22 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCCAA.................................................... 23 3 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCCTA.................................................... 23 3 1 1.00 1 1 0 0 0
.................................................................................................................CCATTAGCTTGTTGTTCAGCCAA..................................................... 23 1 1 1.00 1 1 0 0 0
...................................................................................................................ATTAGATTGTTGTTCAGCCA...................................................... 20 1 1 1.00 1 0 1 0 0
..................................................................................................................CTTTAGCTTGTTGTTCAGCCAC..................................................... 22 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTGGTTCAGCCAC..................................................... 22 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGTCACTA................................................... 24 3 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTTAGCCACCC................................................... 21 2 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACTA................................................... 21 2 1 1.00 1 0 1 0 0
....................................................................................................................TGAGCTTGTTGTTCAGCCACCT................................................... 22 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTAAAA............................................... 26 3 1 1.00 1 0 1 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACTA................................................... 23 2 1 1.00 1 1 0 0 0
....................................................................................................................TCAGCTTGTTGTTCAGCCACA.................................................... 21 2 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCAACC.................................................... 21 1 1 1.00 1 1 0 0 0
.................................................TGGCTGAACAACAGGCTAAT........................................................................................................................ 20 0 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTCGT................................................ 24 2 1 1.00 1 1 0 0 0
.....................................................................................................................TAGATTGTTGTTCAGCCACCTC.................................................. 22 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTAAGCCAC..................................................... 22 1 1 1.00 1 1 0 0 0
...................................................................................................................ATTAGCTCGTTGTTCAGCC....................................................... 19 1 1 1.00 1 1 0 0 0
................................................................................................................GACATTAGCTTGTTGTTCAGCCA...................................................... 23 1 1 1.00 1 0 1 0 0
....................................................................................................................ATAGCTTGTTGTTCAGCCAC..................................................... 20 1 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTG.................................................. 22 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCCA.................................................. 23 2 1 1.00 1 0 0 1 0
.....................................................................................................................TAGCTTGTTGTTCACCCACCT................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TCAGCTTGTTGTTCAGCCACC.................................................... 21 1 1 1.00 1 0 1 0 0
...................................................................................................................ATTACCTTGTTGTTCAGCCA...................................................... 20 1 1 1.00 1 1 0 0 0
...................................................................................................................GTTAGCTTGTTGTTCAGCCACC.................................................... 22 1 1 1.00 1 1 0 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCATC.................................................... 22 1 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTCAAAAA............................................. 27 3 1 1.00 1 0 1 0 0
.......................................................................................................................GCTTGTTGTTCAGCCACCTC.................................................. 20 0 1 1.00 1 0 1 0 0
..............................................................................................................AGGCCATTAGCTTGTTGTTCA.......................................................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCATCA................................................... 24 2 1 1.00 1 0 0 0 1
.....................................................TGAACAACAGGCAAATCG...................................................................................................................... 18 1 1 1.00 1 0 1 0 0
...............................................................................................................GGCCATTAGCTTGTTGTTCAGT........................................................ 22 1 1 1.00 1 1 0 0 0
....................................................CTGAACAACAGGCTAATCGATA................................................................................................................... 22 2 1 1.00 1 0 0 0 1
..................................................................................................................CATTAGCTTGTTGTTAAGCCA...................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCCGCCATCT................................................... 22 2 1 1.00 1 0 0 0 1
...................................................................................................................ATTAGCTTGTTGTTCAGCTACT.................................................... 22 2 1 1.00 1 0 0 0 1
..................................................................................................................TCTTAGCTTGTTGTTCAGCCACCT................................................... 24 2 1 1.00 1 1 0 0 0
..................................................................................................................CATAAGCTTGTTGTTCAGCCACAA................................................... 24 3 1 1.00 1 0 1 0 0
....................................................CTGAACAACAGGCTAATCGTT.................................................................................................................... 21 1 1 1.00 1 0 0 0 1
..................................................................................................................CATTAGCTTGTTGTTCTTCCAC..................................................... 22 2 1 1.00 1 1 0 0 0
.....................................................................................................................CAGCTTGTTGTTCAGCCACCT................................................... 21 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................GACTTCAAACTGGAACAGCC.. 20 0 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCCGCCA...................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACG.................................................... 21 1 1 1.00 1 1 0 0 0
..................................................GGCTGAACAACAGGCTAATCT...................................................................................................................... 21 1 1 1.00 1 0 1 0 0
....................................................................................................................CTAGCTTGTTGTTCAGCCACCT................................................... 22 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTACCTTGTTGTTCAGCCACAA................................................... 24 3 1 1.00 1 1 0 0 0
...................................................................................................................ATTCGCTTGTTGTTCAGCCAC..................................................... 21 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTCGTTCAGCCACCT................................................... 22 1 1 1.00 1 1 0 0 0
...............................................................................................................GGCCATTAGCTTGTTGTTCAG......................................................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................TATTAGCTTGTTGTTCAGCCACC.................................................... 23 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTCGTTCAGCCAC..................................................... 22 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCGGCCA...................................................... 21 1 1 1.00 1 0 1 0 0
..........................................................................................................TAAGAGGCCATTAGCTTGTTGT............................................................. 22 0 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTGGTTGTTCAGCCACCT................................................... 21 1 1 1.00 1 0 1 0 0
.......................................................................................................................TCTTGTTGTTCAGCCACCTC.................................................. 20 1 1 1.00 1 0 1 0 0
..................................................................................................................TATTAGCTTGTTGTTCAGCC....................................................... 20 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCAAAT................................................... 24 2 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCATCT................................................... 22 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAACCAC..................................................... 22 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCAAAA................................................ 25 3 1 1.00 1 0 0 1 0
.....................................................................................................................TATCTTGTTGTTCAGCCACCT................................................... 21 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCACAT................................................... 24 1 1 1.00 1 1 0 0 0
........................................................................................................................TTTGTTGTTCAGCCACCT................................................... 18 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCCC..................................................... 22 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTTAGCCACCTA.................................................. 22 2 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTCTTGTTCAGCCACC.................................................... 21 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCATCCAC..................................................... 22 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCCCCA................................................... 21 2 1 1.00 1 1 0 0 0
..................................................................................................................CATTTGCTTGTTGTTCAGCCACA.................................................... 23 2 1 1.00 1 1 0 0 0
....................................................................................................................TTGGCTTGTTGTTCAGCCACCT................................................... 22 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCATAA................................................... 24 3 2 1.00 2 2 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCTAC..................................................... 22 1 1 1.00 1 0 1 0 0
...................................................................................................................ATTACCTTGTTGTTCAGCCAC..................................................... 21 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCAAC.................................................... 21 1 1 1.00 1 1 0 0 0
.................................................TGGCTGAACAATAGGCTAATC....................................................................................................................... 21 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGTTTGTTGTTCAGCC....................................................... 20 1 1 1.00 1 0 0 1 0
....................................................................................................................TTAGCTTGTTGTTTAGCCACAT................................................... 22 2 1 1.00 1 1 0 0 0
.................................................GGGCTGAACAACAGGCTAATCG...................................................................................................................... 22 1 1 1.00 1 0 1 0 0
...........................................................................................................................GTTGTTCAGCCACCTCTAC............................................... 19 0 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGCTCAGCCACC.................................................... 21 1 1 1.00 1 0 1 0 0
..................................................................................................................CACTAGCTTGTTGTTCAGCCACA.................................................... 23 2 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGCTCAGCCACCT................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCGCC.................................................... 21 1 1 1.00 1 1 0 0 0
.................................................................................................................GCATTAGCTTGTTGTTCAGCCAC..................................................... 23 1 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGCTCAGCCACCTTA................................................. 23 3 1 1.00 1 1 0 0 0
.......................................................................................................................GCTTGTTGTTCAGCCACCTCA................................................. 21 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGATGTTCAGCCACCT................................................... 22 1 1 1.00 1 0 1 0 0
.................................................TGGCTGAACAACAGGCTAATCGA..................................................................................................................... 23 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCACCCACCT................................................... 22 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAACTTGTTGTTCAGCCACCT................................................... 21 1 1 1.00 1 1 0 0 0
.................................................................................................................CATTTAGCTTGTTGTTCAGCCACCT................................................... 25 2 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACGA................................................... 22 2 1 1.00 1 1 0 0 0
..................................................GGCTGAACAACAGGCTAATCGCA.................................................................................................................... 23 1 1 1.00 1 0 1 0 0
...................................................GCTGAACAACAGGCTAATCC...................................................................................................................... 20 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTTAGCCAC..................................................... 22 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCT...................................................... 19 1 1 1.00 1 0 0 1 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCTATT................................................ 25 2 1 1.00 1 0 0 0 1
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTAAAA............................................... 25 3 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTTTTCAGCCACA.................................................... 23 2 1 1.00 1 0 1 0 0
...................................................................................................................ATTAGCTTGTTGTTCACCCAC..................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAACTTGTTGTTCAGCCACC.................................................... 21 1 1 1.00 1 0 1 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCAT..................................................... 21 1 1 1.00 1 0 1 0 0
..........................................................................................................TAAGAGGCCATTAGCTTGTTGTT............................................................ 23 0 1 1.00 1 1 0 0 0
..................................................................................................................CATTGGCTTGTTGTTCAGCCA...................................................... 21 1 1 1.00 1 1 0 0 0
...................................................................................................................ATTCGTTTGTTGTTCAGCCACC.................................................... 22 2 1 1.00 1 0 1 0 0
.................................................................................................................CCATTAGCTTGTTGTTCAGC........................................................ 20 0 1 1.00 1 1 0 0 0
...............................................................................................................GGCCATTAGCTTGTTGTTCAGC........................................................ 22 0 1 1.00 1 0 1 0 0
..................................................................................................................CTTTAGCTTGTTGTTCAGCC....................................................... 20 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGATTGTTGTTCAGCCACA.................................................... 23 2 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGT........................................................ 19 1 1 1.00 1 1 0 0 0
...................................................................................................................ATTAACTTGTTGTTCAGCCACT.................................................... 22 2 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGCCGTTCAGCCACCT................................................... 22 2 1 1.00 1 0 0 1 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACCC................................................... 23 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTGCAGCCACAA................................................... 24 3 1 1.00 1 0 1 0 0
.......................................................................CTTCCATCTTGGAAAGCTATCTTTTG............................................................................................ 26 0 1 1.00 1 0 1 0 0
....................................................................................................................TTAGTTTGTTGTTCAGCCAC..................................................... 20 1 1 1.00 1 1 0 0 0
...................................................................................................................GTTAGCTTGTTGTTCACCCAC..................................................... 21 2 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGATGTTCAGCCACCA................................................... 22 2 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACGT................................................... 21 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCACCCA...................................................... 21 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCCGCCACCTA.................................................. 22 2 1 1.00 1 0 1 0 0
...................................................................................................................ATTAGCTTGTTGTTCAGCCACCTC.................................................. 24 0 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCAAC.................................................... 20 1 1 1.00 1 1 0 0 0
...........................................................................................................AAGAGGCCATTAGCTTGTTGTT............................................................ 22 0 1 1.00 1 1 0 0 0
............................................................................................................AGAGGCCATTAGCTTGTTGTT............................................................ 21 0 1 1.00 1 0 1 0 0
...................................................................................................................................................CCAATCCAACTACCAACCAG...................... 20 0 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTCTTCAGCCACCT................................................... 22 1 1 1.00 1 0 1 0 0
.....................................................................................................................TAGCTTGTTGATCAGCCACCT................................................... 21 1 1 1.00 1 0 1 0 0
......................................................................................................................AGCTTGTTGTTCAGCCACCA................................................... 20 1 1 1.00 1 0 1 0 0
...................................................................................................................ATTAGCTTGTTGTTCGGCCACC.................................................... 22 1 1 1.00 1 1 0 0 0
...................................................GCTGAACAACAGGCTAATCGCT.................................................................................................................... 22 0 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCTCCA................................................... 22 2 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCAT..................................................... 19 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTGTTGTTCAACCA...................................................... 21 1 1 1.00 1 1 0 0 0
..................................................CGCTGAACAACAGGCTAATCG...................................................................................................................... 21 1 1 1.00 1 0 1 0 0
...................................................................................................................ATTAGCTTGCTGTTCAGCCA...................................................... 20 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACCTCAA................................................ 24 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTCGTTCAGCCACC.................................................... 21 1 1 1.00 1 1 0 0 0
..................................................................................................................CATTGGCTTGTTGTTCAGCCAC..................................................... 22 1 1 1.00 1 0 0 0 1
..................................................................................................................CGTTAGCTTGTTGTTCAGCCACA.................................................... 23 2 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTAGTTGTTCAGCCACCT................................................... 21 1 1 1.00 1 0 0 1 0
......................................................................................................................AGCTTGTTGTTCAGCCACCTA.................................................. 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGCTCAGCCA...................................................... 19 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCATCTAA................................................. 23 3 1 1.00 1 1 0 0 0
..................................................................................................................CATTAGCTTGTTGTTCAGCCATC.................................................... 23 1 1 1.00 1 1 0 0 0
.....................................................................................................................TAGCTTGTTGTTCAGCCACAAA.................................................. 22 3 1 1.00 1 0 0 1 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCAC.................................................. 23 1 1 1.00 1 0 1 0 0
..................................................................................................................CATTGCCTTGTTGTTCAGCCAC..................................................... 22 2 1 1.00 1 0 1 0 0
..................................................................................................................CATTAGCTTCTTGTTCAGCCA...................................................... 21 1 1 1.00 1 1 0 0 0
.....................................................................................................................TCGCTTGTTGTTCAGCCACCT................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTTTTGTTCAGCCACCT................................................... 22 1 1 1.00 1 1 0 0 0
....................................................................................................................TTAGCTTGTTGTTCAGCCACCAGG................................................. 24 3 1 1.00 1 0 1 0 0
.......................................................................CTTCTATCTTGGAAAGCTATCTTT.............................................................................................. 24 1 1 1.00 1 1 0 0 0
...................................................GCTGAACAACAGGCTAATCGCTTCC................................................................................................................. 25 0 1 1.00 1 0 1 0 0
...........................................................................................................AAGAGGCCATTAGCTTGTTG.............................................................. 20 0 1 1.00 1 0 0 0 1
....................................................................................................................TTAGCTTGTTCTTCAGCCACAA................................................... 22 3 1 1.00 1 0 1 0 0
..................................................GGCTGAACAACAGGCTAATCGT..................................................................................................................... 22 1 1 1.00 1 0 1 0 0
....................................................................................................................TTAGCTTGTTGTTTAGCCACA.................................................... 21 2 1 1.00 1 1 0 0 0

Anti-sense strand reads

ACGAAGACCGACGGAAGAGTACCTATGGGTAGGGGACTCGCCTGTGCTAACCGACTTGTTGTCCGATTAGCGAAGGTAGAACCTTTCGATAGAAAACGCTGGTGGGATTCTCCGGTAATCGAACAACAAGTCGGTGGAGATGATTGAGGTTAGGTTGATGGTTGGTCCTGAAGTTTGACCTTGTCGGAT

************************************.(((..........((((((((((((((((((((.(((((.....(((...((........))..)))......))))).))))))))))))))))))))..........))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 M054

female body

 V113

male body		 V115

head
..................................................................................................................................................AGTTTAGGTTGATGGTTG......................... 18 1 2 8.00 16 2 4 4 6
................................................................................................................................................CGAGTTTAGGTTGATGGTTG......................... 20 2 2 5.50 11 1 2 8 0
................................................................................................................................................CGAGTTTAGGTTGATGGTT.......................... 19 2 2 4.50 9 0 0 9 0
................................................AACCGACTTGTTGTTCGATT......................................................................................................................... 20 1 2 3.50 7 4 3 0 0
.................................................................................................................................................GAGTTTAGGTTGATGGTTG......................... 19 1 2 3.00 6 0 0 6 0
................................................AACCGACTTGTTGTTCGATTA........................................................................................................................ 21 1 2 2.00 4 0 3 1 0
.................................................ACCGACTTGTTGTCCGATTAGC...................................................................................................................... 22 0 1 2.00 2 1 1 0 0
....................................................................................TTCGATAGAAAACGCTGGTGG.................................................................................... 21 0 1 2.00 2 2 0 0 0
.................................................................................................................................TTCGGTGGAGATGATTGAGGTT...................................... 22 1 1 1.00 1 1 0 0 0
..................................................................................................................................................................TGGTCCTGAAGTTTGACCTTGT..... 22 0 1 1.00 1 1 0 0 0
......................................................................................................TGGGATTCTCCGGTAATCGA................................................................... 20 0 1 1.00 1 1 0 0 0
................................................................GATTAGCGAAGGTAGAAC........................................................................................................... 18 0 1 1.00 1 1 0 0 0
..................................................CCGACTTGTTGTCCGATTAGCGA.................................................................................................................... 23 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................TGATGGTTGGTCCTGAAGTTTG............ 22 0 1 1.00 1 1 0 0 0
........................................................................................................................................................GGTTGATGGTTGGTCCTGAAG................ 21 0 1 1.00 1 1 0 0 0
........................................................................................................................................................GGTTGATGGTTGGTCCTGAA................. 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................CTGAAGTTGGGCCTAGTCGG.. 20 3 2 1.00 2 0 0 2 0
................................................AACCGACTTGTTGTCCGATTAC....................................................................................................................... 22 1 1 1.00 1 0 1 0 0
................................................AACCGACTTGTTGTCCGATTAGC...................................................................................................................... 23 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................CCTGAAGTTTGACCTTGTCGG.. 21 0 1 1.00 1 0 1 0 0
..................................................................................................................GTAATCGAACAACAAGTCGGTG..................................................... 22 0 1 1.00 1 0 1 0 0
...................................................CGACTTGTTGTCCGATTAGC...................................................................................................................... 20 0 1 1.00 1 0 0 1 0
...................................................................................................TGGTGGGATTCTCCGGTAAT...................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................GAAGGTAGAACCTTTCGATAG................................................................................................. 21 0 1 1.00 1 1 0 0 0
...................................................................................TTTCGATAGAAAACGCTGGTG..................................................................................... 21 0 1 1.00 1 0 1 0 0
...............................................................................................................................................TCGAGTTTAGGTTGATGGTT.......................... 20 2 1 1.00 1 0 1 0 0
..................................................CCGACTTGTTGTCCGATTAGC...................................................................................................................... 21 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................GGTCCTGAAGTTTGACCTTGT..... 21 0 1 1.00 1 1 0 0 0
...............................................................................................................................................TCGAGTTTAGGTTGATGGTTG......................... 21 2 1 1.00 1 0 1 0 0
........................................................................................................................................AAGATGATTGAGGTTAGGTTGA............................... 22 1 1 1.00 1 1 0 0 0
..............................................................................GAACCTTTCGATAGAAAACGC.......................................................................................... 21 0 1 1.00 1 1 0 0 0
...............................................TAACCGACTTGTTGTCCGATTA........................................................................................................................ 22 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................TGGTTGGTCCTGAAGTTTGAC.......... 21 0 1 1.00 1 0 1 0 0
..............................................................................................................TCCGGTAATCGAACAACAAGTC......................................................... 22 0 1 1.00 1 0 1 0 0
..............................................................................................................................................GTCGAGTTTAGGTTGATGGTTG......................... 22 3 3 0.67 2 0 2 0 0
.................................................ACCGACTTGTTGTCCGATTAC....................................................................................................................... 21 1 2 0.50 1 1 0 0 0
..............................................AAAACCGACTTGTTGTTCGATTA........................................................................................................................ 23 3 2 0.50 1 0 1 0 0
...............................................TTACCGACTTGTTGTTCGATTA........................................................................................................................ 22 2 2 0.50 1 1 0 0 0
................................................ATCCGACTTGTTGTTCGATT......................................................................................................................... 20 2 2 0.50 1 0 1 0 0
.................................................ACCGACTTGTTGTTCGATTAG....................................................................................................................... 21 1 2 0.50 1 0 0 0 1
..............................................................................................................................................GTCGAGTTTAGGTTGATGGTT.......................... 21 3 10 0.50 5 0 1 4 0
...............................................AAACCGACTTGTTGTTCGATT......................................................................................................................... 21 2 2 0.50 1 1 0 0 0
...............................................TTACCGACTTGTTGTTCGATT......................................................................................................................... 21 2 2 0.50 1 1 0 0 0
...............................................................................................................................................TCGAGTTTAGGTTGATGGTTGT........................ 22 3 2 0.50 1 0 0 1 0
..............................................ATTACCGACTTGTTGTTCGATT......................................................................................................................... 22 3 5 0.40 2 1 1 0 0
..............................................ATGACCGACTTGTTGTTCGATTA........................................................................................................................ 23 3 3 0.33 1 0 0 1 0
.......................................................................................................................................................................CAGAAGTTTGGCCTAGTCGG.. 20 3 3 0.33 1 0 1 0 0
...............................................TAGCCGACTTGTTGTTCGATTAC....................................................................................................................... 23 3 3 0.33 1 1 0 0 0
................................................................................................................................................CGAGTTTAGGTTGATGGT........................... 18 2 7 0.29 2 0 1 0 1
................................................AACCGACTTGTTGTTTGATT......................................................................................................................... 20 2 5 0.20 1 0 1 0 0
.................................................................................................................................................GAGTTTAGGTTGATGATTG......................... 19 2 5 0.20 1 0 0 1 0
..............................AGGGGACTTGCCTATGCCA............................................................................................................................................ 19 3 7 0.14 1 0 0 0 1
................................................................................................................................................CGAGTTTAGGTCGATGGTTG......................... 20 3 10 0.10 1 0 0 1 0
..................................................................................................................................................AGTTTAGGTTGATGCTTG......................... 18 2 10 0.10 1 0 1 0 0
................................................................................................................................................CCAGTTTAGGTTGATGGTTG......................... 20 3 12 0.08 1 0 0 1 0
.........................................................................................................................................................................GAAGTTTGGCCTAGTCGGG. 19 3 12 0.08 1 0 0 0 1
..................................................................................................................................................AGTTAAGGTTGATGGTTG......................... 18 2 17 0.06 1 0 0 0 1
................................................................................................................................................CAAGTTTAGGTTGATGGTTG......................... 20 3 19 0.05 1 0 0 1 0
................................................AAAAGACTTGTTGTTCGATT......................................................................................................................... 20 3 20 0.05 1 0 0 1 0
..........................................................GAGTACGATTAGCGAAGGT................................................................................................................ 19 3 20 0.05 1 0 1 0 0
............GCCAGAGTACCAATGGGT............................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_14:871952-872140 + dse_211 confident TGCTTCTGGCTGCCTTCTCATGGATACCCATCCCCTGAGCGGA------CACGATTGGCTGAACAACAGGCTAATCGCTTCCATCTTGGAAAGCTATCTTTTGCGACCACCCTAAGAGGCCATTAGCTTGTTGTTCAGCCACC---------------T-CTA-CTAACTCCAATCCAACTACCAACCAGGACTTCAAACTGGAACAGCCTA
droSim2 2l:864381-864569 + dsi_233 candidate-rescued TGCTTCTGGCTGCCTTCTCATGGATACCCATCCCCTGAGCGGA------CACATTTGGCTGAACAACAGGCTAATCGCTTCCATCTTGGAAAGCTATCATTTGCGACCACCGTGAAATGCCATTAGCTTGTTGTTCAGCTACT---------------T-CTA-CTAACTCCAATCCAACTACCAACCAGGACTTCAAACTGGAACAGCCTA
dm3 chr2R:224554-224710 + dme_451 CATCATTT--------------GA-----------------------------------AGACCAATGAACCCACTGCTGCTGGTCTTATTAACCGTCTTTTACGTCCGTTGTCA--GGCAATCAACCTGCTTTTTAGCCAATTTATTCGCCTGCC--G-CTA-CTGCTACTAATGTAACTACCAACTTGGACTCCAAACTGGAACAGCTTT
droEre2 scaffold_2484:9938-10068 + CCGT--------------AGCGGAAAGCCATCTTTT------------------------------------------------------------------GCGACAATTGTCAGAAGCAATCAGCCTGTTGTTTAGCCAATTCATCCGCCTGCTCCTACTA-CTGCCTCTAATGCAAGTACCAACATGGACTCCAAACTGGAACAGTTTT
droYak3 2L:887523-887599 - TGCTTCTGGCCATCGCCGCATGGAAACCCATCCCCGGAGCGGAGCAAGGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409554:1629849-1629925 + TGTTTCTAGCTGTTTCCTCATGGAAACCCATCCCCAGAGCTGAGATAAGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302261:2902287-2902363 + CGCTTCTGGCCGCTCCCGCGTGGAGAGCCCACCCCGGAGCGGAGGAAGGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414027:24324-24400 - TGGTTCTGGCCGCTCCCTGGTGGAAACCCAACCCCTGAGCTGAGAAAAGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490458:377285-377361 + TGGTTCTAGCCGATTCCGCATGGAAAGCCAACCCCAGAGCGGAGGAAAGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000769144:41564-41606 + TGATTCTAGCCGTTCCCGCGTGGAAGCCCAAACTCAGAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453904:1173878-1173954 - TTGTTCTAGCCAAATCCGTATGGAAAGCCAACCCCCGAGCGGAGGAAATCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301647:4157-4261 + AACCCATCTCTCACCCA--------------------ACTTTGGTAACGAATCATTTGCT-----------------------------------------------------------------------AGTGTAGCCGCC---------------T-CCAACACATTCCACCGCAAATGCCGCTCTGGAAGCCAAACTAGAACAGCTTT
droBip1 scf7180000393252:4108-4166 - GCCCCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------TAACACATTCCACCGAAAACGCCGCTCTGAGTGCTAAACTGGAACAGCTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TGCTTCTGGCTGCCTTCTCATGGATACCCATCCCCTGAGCGGA------CACGATTGGCTGAACAACAGGCTAATCGCTTCCATCTTGGAAAGCTATCTTTTGCGACCACCCTAAGAGGCCATTAGCTTGTTGTTCAGCCACC---------------T-CTA-CTAACTCCAATCCAACTACCAACCAGGACTTCAAACTGGAACAGCCTASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------T-....................................................2211234.0012345812759927
........................................................................................................................CATTAGCTTGTTGTTCAGCCAC......................................................................221786.00786425934012
........................................................................................................................CATTAGCTTGTTGTTCAGCCA.......................................................................211690.006901771948113
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------......................................................211469.00469143830018
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACC---------------......................................................221197.00197482311313
........................................................................................................................CATTAGCTTGTTGTTCAGCCACA---------------......................................................231194.001944801433
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-....................................................211156.00156644844
........................................................................................................................CATTAGCTTGTTGTTCAGCC........................................................................201128.00128261992
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------A-....................................................221124.00124521692
........................................................................................................................CATTAGCTTGTTGTTCAGCCACA---------------A-....................................................241118.00118720433
.........................................................................................................................ATTAGCTTGTTGTTCAGCCAC......................................................................211100.00100554410
..........................................................................................................................TTAGCTTGTTGTTCAGCCAC......................................................................20184.0084361461
.........................................................................................................................ATTAGCTTGTTGTTCAGCCA.......................................................................20170.0070196405
..........................................................................................................................TTAGCTTGTTGTTCAGCCACA---------------......................................................21168.0068101534
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------T-A...................................................23162.0062330272
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------......................................................20153.0053180350
........................................................GGCTGAACAACAGGCTAATCG.......................................................................................................................................21149.004941080
........................................................................................................................CATTAGCTTGTTGTTCAGCCACC---------------......................................................23143.0043201193
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-C...................................................22143.0043301111
........................................................................................................................CATTAGCTTGTTGTTCAGCCAA......................................................................22139.0039181182
..........................................................................................................................TTAGCTTGTTGTTCAGCCACA---------------A-....................................................22135.003571252
........................................................................................................................CATTAGCTTGTTGTTCAGCCAT......................................................................22135.0035133190
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACC---------------A-....................................................23132.0032130181
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACA---------------......................................................22132.0032103181
........................................................................................................................CATTAGCTTGTTGTTCAGC.........................................................................19129.002971210
..........................................................................................................................TTAGCTTGTTGTTCAGCCA.......................................................................19127.002780172
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-A...................................................22124.002470161
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACT---------------......................................................22117.00173671
........................................................GGCTGAACAACAGGCTAATC........................................................................................................................................20116.001616000
.........................................................................................................................ATTAGCTTGTTGTTCAGCC........................................................................19116.001600160
.........................................................GCTGAACAACAGGCTAATCG.......................................................................................................................................20115.001513020
........................................................................................................................CATTAGCTTGTTGTTCAGCCACC---------------A-....................................................24113.00137051
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------T-AA..................................................24112.00128040
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------A-....................................................21112.00124080
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-CA..................................................23110.00105050
........................................................................................................................CATTAGCTTGTTGTTCAG..........................................................................18110.00101090
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-T...................................................22110.00109010
..........................................................................................................................TTAGCTTGTTGTTCAGCCACT---------------......................................................21110.00102161
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------T-T...................................................2319.0094221
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACA---------------A-....................................................2319.0093060
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------T-C...................................................2319.0098010
...........................................................................................................................TAGCTTGTTGTTCAGCCAC......................................................................1919.0094050
..........................................................................................................................TTAGCTTGTTGTTCAGCCACT---------------A-....................................................2219.0091251
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------C-....................................................2218.0081043
........................................................................................................................CATTAGCTTGTTGTTCAGCCAAA---------------A-....................................................2418.0087010
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------A-A...................................................2318.0084031
........................................................................................................................CATTAGCTTGTTGTTCAGCCACT---------------......................................................2318.0082141
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------A-AA..................................................2417.0073031
........................................................................................................................CATTAGCTTGTTGTTCAGCCAAA---------------......................................................2317.0073031
........................................................................................................................CATTAGCTTGTTGTTCAGCCACA---------------A-A...................................................2517.0074030
........................................................GGCTGAACAACAGGCTAATCGC......................................................................................................................................2216.0066000
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACC---------------T-....................................................2316.0061140
.......................................................TGGCTGAACAACAGGCTAATCG.......................................................................................................................................2216.0066000
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-AA..................................................2316.0064020
.........................................................GCTGAACAACAGGCTAATCGC......................................................................................................................................2115.0055000
...........................................................................................................................TAGCTTGTTGTTCAGCCACA---------------......................................................2015.0053020
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACC---------------A-A...................................................2415.0053020
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------G-....................................................2214.0041030
........................................................................................................................CATTAGCTTGTTGTTCAGCCATA---------------......................................................2314.0042020
........................................................................................................................CATTAGCTTGTTGTTCAGCCACC---------------T-....................................................2414.0041030
..........................................................................................................................TTAGCTTGTTGTTCAGCC........................................................................1814.0040040
............................................................................................................................AGCTTGTTGTTCAGCCACC---------------T-....................................................2014.0043010
..........................................................................................................................TTAGCTTGTTGTTCAGCCAA......................................................................2023.5073040
..........................................................................................................................TTAGCTTGTTGTTCAGCCAT......................................................................2013.0030030
.......................................................TGGCTGAACAACAGGCTAATC........................................................................................................................................2113.0033000
.........................................................................................................................ATTAGCTTGTTGTTCAGC.........................................................................1813.0031011
.........................................................GCTGAACAACAGGCTAATC........................................................................................................................................1913.0033000
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------C-....................................................2113.0030030
...........................................................................................................................TAGCTTGTTGTTCAGCCA.......................................................................1813.0031020
........................................................................................................................CATTAGCTTGTTGTTCAGCCACT---------------A-....................................................2413.0032001
........................................................................................................................CATTAGCTTGTTGTTCAGCCATT---------------......................................................2312.0020110
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACA---------------A-A...................................................2412.0021010
.......................................................................................................................CCATTAGCTTGTTGTTCAGCCAC......................................................................2312.0022000
.........................................................................................................................ATTAGCTTGTTGTTCAGCCAA......................................................................2122.0043100
........................................................................................................................CATTAGCTTGTTGTTCAGCCACG---------------......................................................2312.0021001
........................................................GGCTGAACAACAGGCTAAT.........................................................................................................................................1912.0021010
.......................................................TGGCTGAACAACAGGCTA...........................................................................................................................................1812.0021010
.......................................................TGGCTGAACAACAGGCTAA..........................................................................................................................................1912.0020020
........................................................................................................................CATTAGCTTGTTGTTCAGCCC.......................................................................2112.0021010
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-CT..................................................2312.0022000
.......................................................................................................................CCATTAGCTTGTTGTTCAGCCA.......................................................................2212.0021010
..............................................................................................................................CTTGTTGTTCAGCCACC---------------T-....................................................1812.0022000
...........................................................................................................................TAGCTTGTTGTTCAGCCACT---------------......................................................2012.0020020
..........................................................................................................................TTAGCTTGTTGTTCAGCCACA---------------A-A...................................................2312.0020011
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-AAC-................................................2411.0010010
........................................................................................................................CATTAGCTTGTTGTTCAGCCCAA---------------......................................................2311.0011000
........................................................................................................................CATTAGCTTGTTGTTCAGCCCTA---------------......................................................2311.0010010
.......................................................................................................................CCATTAGCTTGTTGTTCAGCCAA......................................................................2311.0010010
...........................................................................................................................TAGCTTGTTGTTCAGCCACT---------------A-....................................................2111.0011000
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACT---------------A-....................................................2311.0010010
.......................................................TGGCTGAACAACAGGCTAAT.........................................................................................................................................2011.0011000
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-CGT-................................................2411.0010010
...........................................................................................................................TAGCTTGTTGTTCAGCCACC---------------T-G...................................................2211.0011000
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------C-A...................................................2311.0010001
.............................................................................................................................GCTTGTTGTTCAGCCACC---------------T-C...................................................2011.0011000
....................................................................................................................AGGCCATTAGCTTGTTGTTCA...........................................................................2111.0010010
.....................................................................................................................GGCCATTAGCTTGTTGTTCAGT.........................................................................2211.0010010
..............................................................................................................................................................................................GACTTCAAACTGGAACAGCC..2011.0010010
..........................................................................................................................TTAGCTTGTTGTTCAGCCACG---------------......................................................2111.0010010
........................................................GGCTGAACAACAGGCTAATCT.......................................................................................................................................2111.0011000
.....................................................................................................................GGCCATTAGCTTGTTGTTCAG..........................................................................2111.0010010
................................................................................................................TAAGAGGCCATTAGCTTGTTGT..............................................................................2211.0010010
........................................................................................................................CATTAGCTTGTTGTTCAGCCATA---------------A-....................................................2421.0020020
.................................................................................................................................GTTGTTCAGCCACC---------------T-CTA-C...............................................1911.0011000
.............................................................................................................................GCTTGTTGTTCAGCCACC---------------T-CA..................................................2111.0011000
.......................................................TGGCTGAACAACAGGCTAATCGA......................................................................................................................................2311.0011000
..........................................................................................................................TTAGCTTGTTGTTCAGCCACG---------------A-....................................................2211.0010010
........................................................GGCTGAACAACAGGCTAATCGCA.....................................................................................................................................2311.0011000
.........................................................GCTGAACAACAGGCTAATCC.......................................................................................................................................2011.0011000
..........................................................................................................................TTAGCTTGTTGTTCAGCCT.......................................................................1911.0010001
.........................................................................................................................ATTAGCTTGTTGTTCAGCCAT......................................................................2111.0011000
................................................................................................................TAAGAGGCCATTAGCTTGTTGTT.............................................................................2311.0010010
.......................................................................................................................CCATTAGCTTGTTGTTCAGC.........................................................................2011.0010010
.....................................................................................................................GGCCATTAGCTTGTTGTTCAGC.........................................................................2211.0011000
........................................................................................................................CATTAGCTTGTTGTTCAGT.........................................................................1911.0010010
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACC---------------C-....................................................2311.0010010
.............................................................................CTTCCATCTTGGAAAGCTATCTTTTG.............................................................................................................2611.0011000
.........................................................................................................................ATTAGCTTGTTGTTCAGCCACC---------------T-C...................................................2411.0011000
.................................................................................................................AAGAGGCCATTAGCTTGTTGTT.............................................................................2211.0010010
..................................................................................................................AGAGGCCATTAGCTTGTTGTT.............................................................................2111.0011000
..........................................................................................................................................................................CCAATCCAACTACCAACCAG......................2011.0010010
............................................................................................................................AGCTTGTTGTTCAGCCACC---------------A-....................................................2011.0011000
.........................................................GCTGAACAACAGGCTAATCGCT.....................................................................................................................................2211.0011000
...........................................................................................................................TAGCTTGTTGTTCAGCCAT......................................................................1911.0011000
............................................................................................................................AGCTTGTTGTTCAGCCACC---------------T-A...................................................2111.0010010
...........................................................................................................................TAGCTTGTTGTTCAGCCACA---------------A-A...................................................2211.0010001
..........................................................................................................................TTAGCTTGTTGTTCAGCCACC---------------A-GG..................................................2411.0011000
.........................................................GCTGAACAACAGGCTAATCGCTTCC..................................................................................................................................2511.0011000
.................................................................................................................AAGAGGCCATTAGCTTGTTG...............................................................................2011.0010100
........................................................GGCTGAACAACAGGCTAATCGT......................................................................................................................................2211.0011000
droSim2
TGCTTCTGGCTGCCTTCTCATGGATACCCATCCCCTGAGCGGA------CACATTTGGCTGAACAACAGGCTAATCGCTTCCATCTTGGAAAGCTATCATTTGCGACCACCGTGAAATGCCATTAGCTTGTTGTTCAGCTACT---------------T-CTA-CTAACTCCAATCCAACTACCAACCAGGACTTCAAACTGGAACAGCCTASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................................................................CATTAGCTTGTTGTTCAGCTA.......................................................................2112571.00257151834835625601907766126843106000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------......................................................2311619.001619555053870857189714423912916000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------......................................................2111381.00138121952727567135146525919314000
..........................................................................................................................TTAGCTTGTTGTTCAGCTA.......................................................................1911268.00126802014373418607406142404000
........................................................................................................................CATTAGCTTGTTGTTCAGCTAC......................................................................2211157.001157026713298101142370019424000
.............................................................................................................................GCTTGTTGTTCAGCTA.......................................................................1611018.00101800000000051013000000
........................................................GGCTGAACAACAGGCTAATCG.......................................................................................................................................211598.0059800445520600526127000
..........................................................................................................................TTAGCTTGTTGTTCAGCT........................................................................181576.005760000421012424484000000
........................................................................................................................CATTAGCTTGTTGTTCAGCT........................................................................201553.00553122361126102231592483201000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-C...................................................231547.0054700004895510000011000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTACT---------------......................................................221540.0054021736161123129363373200000
.............................................................................................................................GCTTGTTGTTCAGCTAC......................................................................171529.005290000000001528000000
..........................................................................................................................TTAGCTTGTTGTTCAG..........................................................................161497.0049700000069387046274000000
.............................................................................................................................GCTTGTTGTTCAGCTACT---------------......................................................181471.004710000100001469000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-....................................................221457.0045700058121381829172222132000
............................................................................................................................AGCTTGTTGTTCAGCTA.......................................................................171401.004010000000000401000000
........................................................................................................................CATTAGCTTGTTGTTCAGC.........................................................................191366.00366513122347425268500000
.........................................................GCTGAACAACAGGCTAATCG.......................................................................................................................................201334.00334323119003240213761097000
..........................................................................................................................TTAGCTTGTTGTTCAGCTAC......................................................................201316.0031601141671232111299013000
........................................................................................................................CATTAGCTTGTTGTTCAG..........................................................................181274.002742510121017473211200000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGT.........................................................................221264.0026400440002474375532700000
..........................................................................................................................TTAGCTTGTTGTTCAGC.........................................................................171252.00252000000421111224000000
..........................................................................................................................TTAGCTTGTTGTTCA...........................................................................151241.002410000001910319289000000
........................................................GGCTGAACAACAGGCTAATCGC......................................................................................................................................221213.00213306191032312311315024000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAG..........................................................................211182.0018252113706030220600000
........................................................................................................................CATTAGCTTGTTGTTCAGCTAA......................................................................221174.001743294200122261302000
...........................................................TGAACAACAGGCTAATCG.......................................................................................................................................181169.001690000000000169000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTA.......................................................................201135.0013500021700123106400000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTAC......................................................................211123.001230003143120095014000
............................................................................................................................AGCTTGTTGTTCAGCTAC......................................................................181123.001230000300000120000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-C...................................................221121.001210000992001018100000
............................................................GAACAACAGGCTAATCG.......................................................................................................................................171110.001100000000000110000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCT........................................................................191104.001040001172000084000000
.........................................................GCTGAACAACAGGCTAATCGC......................................................................................................................................21199.009941911221345750000000
.............................................................................................................................GCTTGTTGTTCAGCTACT---------------T-....................................................19196.0096000000000195000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------......................................................20189.00890004390038625400000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-CTA-AA..............................................26189.008900010017739250000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGA.........................................................................22176.007600700011301572400000
...........................................................................................................................TAGCTTGTTGTTCAGCT........................................................................17162.0062000000101159000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGC.........................................................................22162.00620012080518780400000
...........................................................................................................................TAGCTTGTTGTTCAGCTAC......................................................................19161.00610000371000023000000
.........................................................GCTGAACAACAGGCTAATC........................................................................................................................................19158.005812121711114117000000
...........................................................................................................................TAGCTTGTTGTTCAGCTA.......................................................................18157.0057000070001049000000
.............................................................................................................................GCTTGTTGTTCAGCTAA......................................................................17256.501130000000000113000000
.........................................................................................................................ATTAGCTTGTTGTTCAG..........................................................................17156.0056000000110252000000
............................................................................................................................AGCTTGTTGTTCAGCTACT---------------......................................................19155.0055000110000053000000
.........................................................................................................................ATTAGCTTGTTGTTCAGC.........................................................................18153.00530011310000020000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACA---------------......................................................23152.00520006002781412300000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-....................................................21150.005000015190000016000000
..............................................................................................................................CTTGTTGTTCAGCTAC......................................................................16145.0045000000000144000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTAT......................................................................22145.0045026200010033100000
.......................................................TGGCTGAACAACAGGCTAATCGC......................................................................................................................................23144.0044000041101010000000
...........................................................TGAACAACAGGCTAATC........................................................................................................................................17143.0043000000003436000000
..............................................................................................................................CTTGTTGTTCAGCTA.......................................................................15141.0041000000010238000000
............................................................................................................................AGCTTGTTGTTCAGCTAA......................................................................18241.0082000000000082000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------A-....................................................24138.00380007002170110100000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-CTA-................................................24137.00370000003315160000000
........................................................GGCTGAACAACAGGCTAA..........................................................................................................................................18136.00360000232000011000000
..............................................................................................................................CTTGTTGTTCAGCTACT---------------......................................................17136.0036000000000036000000
...........................................................................................................................TAGCTTGTTGTTCAGC.........................................................................16134.0034000000122029000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------A-....................................................22134.00340006000000131212000
.......................................................TGGCTGAACAACAGGCTAATCG.......................................................................................................................................22134.0034000500000028100000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACA---------------......................................................21132.00320001000110810200000
............................................................................................................................AGCTTGTTGTTCAGCT........................................................................16131.0031000000000031000000
..............................................................................................................................CTTGTTGTTCAGCTACT---------------T-....................................................18130.0030000000000030000000
...............................................................................................................................TTGTTGTTCAGCTACT---------------......................................................16129.0029000000000029000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACA---------------A-....................................................24127.0027000100213127100000
.............................................................................................................................GCTTGTTGTTCAGCTACA---------------......................................................18126.0026000000000026000000
...............................................................................................................................TTGTTGTTCAGCTACT---------------T-....................................................17125.0025000000000025000000
...........................................................TGAACAACAGGCTAAT.........................................................................................................................................16125.0025000000000124000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------T-C...................................................25125.0025000023200000000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTAAA---------------A-....................................................24123.0023000100171211000000
...........................................................................................................................TAGCTTGTTGTTCAG..........................................................................15123.0023000000252212000000
........................................................GGCTGAACAACAGGCTAATC........................................................................................................................................20123.0023000111101027000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-CTA-A...............................................25123.0023000000049100000000
...............................................................................................................................TTGTTGTTCAGCTAC......................................................................15222.0044000000000044000000
.............................................................................................................................GCTTGTTGTTCAGCT........................................................................15122.0022000000000022000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGTA........................................................................23121.002100300034740000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-CT..................................................23121.0021000020216100000000
.............................................................................................................................GCTTGTTGTTCAGCTACT---------------A-....................................................19121.0021000000000021000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCA...........................................................................20121.002100002035630200000
........................................................GGCTGAACAACAGGCTA...........................................................................................................................................17119.0019000000000019000000
........................................................................................................................CATTAGCTTGTTGTTC............................................................................16118.0018000000032310000000
.......................................................TGGCTGAACAACAGGCTAATC........................................................................................................................................21118.001800215005050000000
.........................................................GCTGAACAACAGGCTAATCGT......................................................................................................................................21118.001800300011033007000
................................................................................................................................TGTTGTTCAGCTACT---------------T-....................................................16117.0017000000000017000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTT.......................................................................21117.0017000000000011501000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-CTA-CA..............................................26117.0017000000211130000000
........................................................................................................................CATTAGCTTGTTGTT.............................................................................15216.5033000000293172000000
..........................................................CTGAACAACAGGCTAATCG.......................................................................................................................................19116.0016001000000015000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTACT---------------A-....................................................23116.0016000200011012000000
.......................................................TGGCTGAACAACAGGCTAA..........................................................................................................................................19116.001600009000007000000
........................................................................................................................CATTAGCTTGTTGTTCA...........................................................................17115.001500000025134000000
.........................................................................................................................ATTAGCTTGTTGTTCA...........................................................................16115.0015000000010212000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACA---------------A-....................................................22113.0013000100000012000000
................................................................................................................................TGTTGTTCAGCTACT---------------......................................................15113.0013000000000013000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGCA........................................................................23113.001300000002920000000
.......................................................................................................................CCATTAGCTTGTTGTTCAGCTA.......................................................................22112.001200200025002100000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTACT---------------T-....................................................23112.0012000100000110000000
...........................................................TGAACAACAGGCTAATCGT......................................................................................................................................19112.0012000000000012000000
........................................................GGCTGAACAACAGGCT............................................................................................................................................16112.0012000000000012000000
.........................................................GCTGAACAACAGGCTAAT.........................................................................................................................................18111.001100102000008000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACA---------------A-A...................................................25111.001100000013313000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACG---------------......................................................23111.001121310000004000000
........................................................GGCTGAACAACAGGCTAATCGT......................................................................................................................................22111.001101220000032001000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------T-....................................................24111.001100033000005000000
.......................................................................................................................CCATTAGCTTGTTGTTCAGCT........................................................................21110.001000002001232000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTAAA---------------......................................................23110.001000010001116000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-CA..................................................23110.001000000000351100000
..........................................................................................................................TTAGCTTGTTGTTCAA..........................................................................1689.75780000005334351000000
.............................................................................................................................GCTTGTTGTTCAGCTAT......................................................................1739.6729000000000029000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------A-AA..................................................2619.00900000004041000000
.............................................................AACAACAGGCTAATCG.......................................................................................................................................1619.00900000000009000000
.........................................................GCTGAACAACAGGCTAATCGCT.....................................................................................................................................2219.00920300010001002000
....................................................................................................................ATGCCATTAGCTTGTTGTTCAG..........................................................................2219.00901800000000000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-A...................................................2318.00800000000002024000
.......................................................TGGCTGAACAACAGGCTAAT.........................................................................................................................................2018.00800001000016000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTACA---------------A-....................................................2318.00800000000017000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTTT......................................................................2218.00800100000005200000
.......................................................TGGCTGAACAACAGGCTA...........................................................................................................................................1818.00800204000002000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTTA......................................................................2217.00700100000006000000
.......................................................TGGCTGAACAACAGG..............................................................................................................................................1517.00700000000007000000
............................................................................................................................AGCTTGTTGTTCAGCTAT......................................................................1817.00700000000007000000
...........................................................TGAACAACAGGCTAATCGC......................................................................................................................................1917.00700200000005000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGAA........................................................................2316.00600000003210000000
........................................................................................................................CATTAGCTTGTTGTTCAGCC........................................................................2016.00601300000002000000
..........................................................CTGAACAACAGGCTAATC........................................................................................................................................1816.00600000010014000000
..........................................................................................................................TTAGCTTGTTGTTCAGCA........................................................................1816.00600000000321000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTG.......................................................................2116.00602010001002000000
..........................................................CTGAACAACAGGCTAAT.........................................................................................................................................1716.00600000000006000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-A...................................................2216.00600010000005000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTATA---------------......................................................2316.00600000010112100000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAGG.........................................................................2215.00500500000000000000
.............................................................................................................................GCTTGTTGTTCAGCTACT---------------T-C...................................................2015.00500005000000000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTACT---------------T-C...................................................2415.00500001400000000000
........................................................GGCTGAACAACAGGCTAAT.........................................................................................................................................1915.00510002000002000000
...........................................................TGAACAACAGGCTAATCGCT.....................................................................................................................................2015.00500200000003000000
.......................................................TGGCTGAACAACAGGCT............................................................................................................................................1715.00500000000005000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAC..........................................................................2115.00501200000110000000
...........................................................................................................................TAGCTTGTTGTTCAGCTAA......................................................................1914.00400000000004000000
.........................ACCCATCCCCTGAGCGGA------...................................................................................................................................................................1824.00800008000000000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-CT..................................................2414.00400001021000000000
...................................................................................................................AATGCCATTAGCTTGTTGTTCAG..........................................................................2314.00401300000000000000
........................................................GGCTGAACAACAGGCTAATCGCA.....................................................................................................................................2314.00400000002020000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACC---------------......................................................2314.00400100001002000000
............................................................................................................................AGCTTGTTGTTCAGC.........................................................................1514.00400000013000000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCTACA---------------......................................................2214.00400010000012000000
.....................................................................................................................TGCCATTAGCTTGTTGTTC............................................................................1914.00401003000000000000
.......................................................TGGCTGAACAACAGGCTAATCGA......................................................................................................................................2313.00300000000030000000
.................................................................................................................................GTTGTTCAGCTACT---------------T-....................................................1513.00300000000003000000
...........................................................TGAACAACAGGCTAATCA.......................................................................................................................................1813.00300000000003000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-CTA-AA..............................................2713.00300000003000000000
..........................................................CTGAACAACAGGCTAATCGT......................................................................................................................................2013.00300000000003000000
.....................................................................................................................TGCCATTAGCTTGTTGTTCAA..........................................................................2113.00300000000120000000
...........................................................................................................................TAGCTTGTTGTTCAGCTACT---------------T-AA..................................................2313.00300010001010000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTC.......................................................................2113.00301000001000100000
...............................................................................................................................TTGTTGTTCAGCTACT---------------A-....................................................1723.00600000000006000000
........................................................GGCTGAACAACAGGCTAAC.........................................................................................................................................1913.00300000000003000000
....................................................................................................................ATGCCATTAGCTTGTTGTTCAGT.........................................................................2313.00300100001000100000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------G-....................................................2413.00300300000000000000
.........................................................GCTGAACAACAGGCTAATCGA......................................................................................................................................2113.00300000002010000000
.........................................................GCTGAACAACAGGCTAATCT.......................................................................................................................................2013.00300000001000002000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-AA..................................................2413.00300000000011010000
............................................................GAACAACAGGCTAAT.........................................................................................................................................1513.00300000000003000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------A-A...................................................2513.00300000010002000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-CTA-................................................2513.00300000021000000000
..........................................................................................................................TTAGCTTGTTGTTCAGA.........................................................................1732.67800000021221000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACT---------------T-CTA-A...............................................2612.00200000020000000000
.........................................................GCTGAACAACAGGCTAATCC.......................................................................................................................................2012.00200200000000000000
.............................................................AACAACAGGCTAATCGCTA....................................................................................................................................1912.00200000000002000000
.........................................................GCTGAACAACAGGCT............................................................................................................................................1512.00200000000002000000
..........................................................................................................................TTAGCTTGTTGTTCAGCTACG---------------......................................................2112.00200010000010000000
........................................................................................................................CATTAGCTTGTTGTTCAGCTACT---------------A-G...................................................2512.00200000000002000000
............................................................................................................................AGCTTGTTGTTCAGCTACA---------------......................................................1912.00200000000002000000
.............................................................................................................................GCTTGTTGTTCAGCTACT---------------C-....................................................1912.00200000000002000000
.........................................................................................................................ATTAGCTTGTTGTTCAGCG........................................................................1912.00200000000002000000
...........................................................TGAACAACAGGCTAA..........................................................................................................................................1522.00400000000004000000
..............................................................................................................................CTTGTTGTTCAGCTACT---------------A-....................................................1822.00400000000004000000
........................................................GGCTGAACAACAGGCTAATCGA......................................................................................................................................2212.00200010000001000000
..................................................................................................ATTTGCGACCACCGTGAAATG.............................................................................................2112.00200000000002000000
.........................................................................................................................ATTAGCTTGTTGTTCAGT.........................................................................1812.00200100000001000000
........................................................................................................................CATTAGCTTGTTGTTCAA..........................................................................1812.00200000000200000000
dm3
CATCATTT--------------GA-----------------------------------AGACCAATGAACCCACTGCTGCTGGTCTTATTAACCGTCTTTTACGTCCGTTGTCA--GGCAATCAACCTGCTTTTTAGCCAATTTATTCGCCTGCC--G-CTA-CTGCTACTAATGTAACTACCAACTTGGACTCCAAACTGGAACAGCTTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................AGACCAATGAACCCACTGCT.....................................................................................................................................2042.259000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTTACGTCCGTTGTCA--GGCAATCAACC....................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTT--------------GA-----------------------------------AGACCAATGAACCCACTGCT.....................................................................................................................................2642.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTT--------------GA-----------------------------------AGACCAATGAACCCACTGC......................................................................................................................................2541.757000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000010004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCATTT--------------GA-----------------------------------AGACCAATGAACCCACTGC......................................................................................................................................2731.675000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010200000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTT--------------GA-----------------------------------AGACCAATGAACCCACTGC......................................................................................................................................2440.753000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T--------------GA-----------------------------------AGACCAATGAACCCACTGCTGCT..................................................................................................................................2640.753000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GACCAATGAACCCACTGCT.....................................................................................................................................1940.753000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T--------------GA-----------------------------------AGACCAATGAACCCACTGCTGC...................................................................................................................................2540.753000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..TCATTT--------------GA-----------------------------------AGACCAATGAACCCACTGCT.....................................................................................................................................2830.672000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ACCAATGAACCCACTGCT.....................................................................................................................................1850.603000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTT--------------GA-----------------------------------AGACCAATGAACCCACTGCTGC...................................................................................................................................2740.502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTT--------------GA-----------------------------------AGACCAATGAACCCACTGCT.....................................................................................................................................2540.502000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AGACCAATGAACCCACTGC......................................................................................................................................1940.502000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT--------------GA-----------------------------------AGACCAATGAACCCACT........................................................................................................................................2150.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.....TTT--------------GA-----------------------------------AGACCAATGAACCCACT........................................................................................................................................2250.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AATGAACCCACTGCTGCTGGT...............................................................................................................................2150.402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GGACTCCAAACTGGAACAGCTT.2230.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..........................................................................................................................................CCAATTTATTCGCCTGCC--G-CT..................................................2130.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................ATTTATTCGCCTGCC--G-CTA-................................................1930.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCATTT--------------GA-----------------------------------AGACCAATGAACCCACTGCTA....................................................................................................................................2930.331000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTT--------------GA-----------------------------------AGACCAATGAAC.............................................................................................................................................1860.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................A-----------------------------------AGACCAATGAACCCACTGCTGCTGG................................................................................................................................2640.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GACCAATGAACCCACTGCTGCTG.................................................................................................................................2340.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GACCAATGAACCCACTGCTGC...................................................................................................................................2140.251000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTT--------------GA-----------------------------------AGACCAATGAACCCACTG.......................................................................................................................................2340.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T--------------GA-----------------------------------AGACCAATGAACCCACTGCTGCTGG................................................................................................................................2840.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AGACCAATGAACCCACTGCTGCTGG................................................................................................................................2540.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CATCATTT--------------GA-----------------------------------AGACCAATGAACCCACT........................................................................................................................................2740.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
CATCATTT--------------GA-----------------------------------AGACCAATGA...............................................................................................................................................2050.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.ATCATTT--------------GA-----------------------------------AGACCAATGAAC.............................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTT--------------GA-----------------------------------AGACCAATGAACCCAC.........................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
CCGT--------------AGCGGAAAGCCATCTTTT------------------------------------------------------------------GCGACAATTGTCAGAAGCAATCAGCCTGTTGTTTAGCCAATTCATCCGCCTGCTCCTACTA-CTGCCTCTAATGCAAGTACCAACATGGACTCCAAACTGGAACAGTTTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads
droYak3
TGCTTCTGGCCATCGCCGCATGGAAACCCATCCCCGGAGCGGAGCAAGGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................CCTGGCGTAGAGGTTAACC........................................................................................................................................19107.107162918112140000
........................................................ACCTGGCGTAGAGGTTAACC........................................................................................................................................20104.80480172200090000
..........................................................CTGGCGTAGAGGTTAACC........................................................................................................................................18104.00401631540110000
.....................................................CTTACCTGGCGTAGAGGTTAACC........................................................................................................................................23101.7017011400020000
......................................................TTACCTGGCGTAGAGGTTAACC........................................................................................................................................22101.4014021100010000
.......................................................TACCTGGCGTAGAGGTTAACC........................................................................................................................................21101.201202800020000
..................................................ATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------27101.101109200000000
...................................................TACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------26100.90909000000000
........................................................ACCTGGCGTAGAGGTTAAC.........................................................................................................................................19100.80807100000000
..................................................ATACTTACCTGGCGTAGAGG..............................................................................................................................................20110.64703103000000
..................................................ATACTTACCTGGCGTAGAGGT.............................................................................................................................................21110.45500000320000
.........................................................CCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------20100.40400020110000
.........................................................CCTGGCGTAGAGGTTAAC.........................................................................................................................................18100.40412000100000
...........................................................TGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------18100.40400211000000
..................................................ATACTTACCTGGCGTAGAG...............................................................................................................................................19110.36403000100000
..................................................ATACTTACCTGGCGTAGAGGTTAA..........................................................................................................................................24100.30301000200000
....................................................ACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------25100.30303000000000
....................................................ACTTACCTGGCGTAGAGGTTAACC........................................................................................................................................24100.30302100000000
...................................................TACTTACCTGGCGTAGAGGTTAACC........................................................................................................................................25100.30302100000000
..................................................ATACTTACCTGGCGTAGA................................................................................................................................................18110.27300002100000
.....................................................CTTACCTGGCGTAGAGGT.............................................................................................................................................18110.18201001000000
......................................................TTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------23100.10101000000000
.....................................................CTTACCTGGCGTAGAGGTT............................................................................................................................................19100.10101000000000
.....................................................CTTACCTGGCGTAGAGGTTAAC.........................................................................................................................................22100.10110000000000
..................................................ATACTTACCTGGCGTAGAGGTTA...........................................................................................................................................23100.10101000000000
..................................................ATACTTACCTGGCGTAGAGGTTAACC........................................................................................................................................26100.10101000000000
.....................................................CTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------24100.10100100000000
...................................................TACTTACCTGGCGTAGAGGTTAAC.........................................................................................................................................24100.10100100000000
...................................................TACTTACCTGGCGTAGAGGTT............................................................................................................................................21100.10101000000000
......................................................TTACCTGGCGTAGAGGTTAAC.........................................................................................................................................21100.10100000100000
..................................................ATACTTACCTGGCGTAGAGGTTAAC.........................................................................................................................................25100.10101000000000
.......................................................TACCTGGCGTAGAGGTTAAC.........................................................................................................................................20100.10100100000000
...................................................TACTTACCTGGCGTAGAGGT.............................................................................................................................................20110.09100000010000
...................................................TACTTACCTGGCGTAGAGG..............................................................................................................................................19110.09101000000000
droEug1
TGTTTCTAGCTGTTTCCTCATGGAAACCCATCCCCAGAGCTGAGATAAGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCTTCTGGCCGCTCCCGCGTGGAGAGCCCACCCCGGAGCGGAGGAAGGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGGTTCTGGCCGCTCCCTGGTGGAAACCCAACCCCTGAGCTGAGAAAAGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGGTTCTAGCCGATTCCGCATGGAAAGCCAACCCCAGAGCGGAGGAAAGCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGATTCTAGCCGTTCCCGCGTGGAAGCCCAAACTCAGAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTGTTCTAGCCAAATCCGTATGGAAAGCCAACCCCCGAGCGGAGGAAATCATACTTACCTGGCGTAGAGGTTAACCG---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AACCCATCTCTCACCCA--------------------ACTTTGGTAACGAATCATTTGCT-----------------------------------------------------------------------AGTGTAGCCGCC---------------T-CCAACACATTCCACCGCAAATGCCGCTCTGGAAGCCAAACTAGAACAGCTTTSizeHit CountTotal NormTotal
No Reads
droBip1
GCCCCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------TAACACATTCCACCGAAAACGCCGCTCTGAGTGCTAAACTGGAACAGCTTTSizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:36 PM