ID:

dse_18

 Coordinate:

scaffold_10:1477784-1477847 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.6 -37.3 -37.3

Flybase annnotation

utr3 [utr3_minus_9718]

No Repeatable elements found

Sense Strand Reads

ACAAAGTGCTCCTTGCAACTCCAACTTAGGATAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAACGCTCAAGGCCACTTAAGGATCCACGTTTCTG

***********************************..(((.(((....(((((((((((((.(((((((((((((...........))).)))))))))).))))))))))).))...))).)))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V115

head

 V114

embryo

 M054

female body

 V113

male body
............................................................................................TTCGTTGTCGACGAAACCTGC................................................... 21 0 1 13672.00 13672 13218 187 245 22
............................................................................................TTCGTTGTCGACGAAACCTGCA.................................................. 22 0 1 2713.00 2713 2025 276 403 9
..................................................CGGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 0 1 1028.00 1028 512 501 3 12
............................................................................................TTCGTTGTCGACGAAACCTG.................................................... 20 0 1 551.00 551 396 4 150 1
............................................................................................TTCGTTGTCGACGAAACCTGCAT................................................. 23 0 1 372.00 372 349 4 13 6
............................................................................................TTCGTTGTCGACGAAACCTGCAA................................................. 23 1 1 201.00 201 173 10 15 3
............................................................................................TTCGTTGTCGACGAAACCTGT................................................... 21 1 1 162.00 162 155 0 6 1
............................................................................................TTCGTTGTCGACGAAACCT..................................................... 19 0 1 94.00 94 82 0 12 0
............................................................................................TTCGTTGTCGACGAAACCTGA................................................... 21 1 1 80.00 80 79 0 1 0
..................................................CGGGTTTCGTTAGCAGCGGGC............................................................................................. 21 0 1 71.00 71 51 17 0 3
.............................................................................................TCGTTGTCGACGAAACCTGCA.................................................. 21 0 1 54.00 54 12 1 41 0
.............................................................................................TCGTTGTCGACGAAACCTGC................................................... 20 0 1 50.00 50 25 1 24 0
............................................................................................TTCGTTGTCGACGAAACCTAC................................................... 21 1 1 38.00 38 38 0 0 0
............................................................................................TTCGTTGTCGACTAAACCTGC................................................... 21 1 1 37.00 37 36 0 1 0
............................................................................................TTCGTTGTCGACGAAACCTCC................................................... 21 1 1 34.00 34 34 0 0 0
...............................................................................................GTTGTCGACGAAACCTGC................................................... 18 0 1 26.00 26 24 2 0 0
............................................................................................TTCGTTGTCGATGAAACCTGC................................................... 21 1 1 26.00 26 18 5 2 1
............................................................................................TTCTTTGTCGACGAAACCTGC................................................... 21 1 1 26.00 26 24 1 1 0
............................................................................................TTCGTTGTCAACGAAACCTGC................................................... 21 1 1 24.00 24 24 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTTC................................................... 21 1 1 24.00 24 24 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTGC................................................... 21 1 1 24.00 24 24 0 0 0
............................................................................................TTCGTTGTCGACGAAACCAGC................................................... 21 1 1 22.00 22 22 0 0 0
............................................................................................TTCGTTGTCGACAAAACCTGC................................................... 21 1 1 22.00 22 20 0 2 0
............................................................................................TTCGTTGTCGACGAAACCTGCT.................................................. 22 1 1 21.00 21 18 2 1 0
............................................................................................TTCGTTGTCGACGAAACCCGC................................................... 21 1 1 21.00 21 21 0 0 0
............................................................................................TTCGTTGTAGACGAAACCTGC................................................... 21 1 1 20.00 20 20 0 0 0
.............................................................................................TCGTTGTCGACGAAACCTG.................................................... 19 0 1 18.00 18 2 0 16 0
............................................................................................TTCGCTGTCGACGAAACCTGC................................................... 21 1 1 18.00 18 16 0 2 0
............................................................................................TTCGTTGACGACGAAACCTGC................................................... 21 1 1 17.00 17 17 0 0 0
............................................................................................TTCGTTGTCTACGAAACCTGC................................................... 21 1 1 16.00 16 16 0 0 0
............................................................................................TTCCTTGTCGACGAAACCTGC................................................... 21 1 1 16.00 16 16 0 0 0
............................................................................................TTCGTTGTCGACGAGACCTGC................................................... 21 1 1 16.00 16 16 0 0 0
.................................................TCGGGTTTCGTTAGCAGCGGGC............................................................................................. 22 0 1 16.00 16 15 0 0 1
...................................................GGGTTTCGTTAGCAGCGGGCT............................................................................................ 21 0 1 15.00 15 10 5 0 0
............................................................................................TTCGTTGTCGATGAAACCTGCA.................................................. 22 1 1 14.00 14 3 11 0 0
............................................................................................TTTGTTGTCGACGAAACCTGC................................................... 21 1 1 14.00 14 13 1 0 0
............................................................................................CTCGTTGTCGACGAAACCTGC................................................... 21 1 1 14.00 14 12 1 1 0
............................................................................................TTCGTTGTCGACGAAACATGC................................................... 21 1 1 13.00 13 10 0 3 0
............................................................................................TTCGTTATCGACGAAACCTGC................................................... 21 1 1 12.00 12 12 0 0 0
............................................................................................ATCGTTGTCGACGAAACCTGC................................................... 21 1 1 12.00 12 11 0 1 0
............................................................................................TTCGTTGTCGGCGAAACCTGC................................................... 21 1 1 12.00 12 12 0 0 0
............................................................................................TTCGTTGTCGACGAAACCGGC................................................... 21 1 1 12.00 12 11 0 1 0
............................................................................................TTCGTCGTCGACGAAACCTGC................................................... 21 1 1 12.00 12 12 0 0 0
............................................................................................TTCGTTGTCGACGAAGCCTGC................................................... 21 1 1 11.00 11 10 0 1 0
..................................................CGGGTTTCGTTAGCAGCGGG.............................................................................................. 20 0 1 11.00 11 7 4 0 0
............................................................................................TTCGTAGTCGACGAAACCTGC................................................... 21 1 1 10.00 10 10 0 0 0
............................................................................................TCCGTTGTCGACGAAACCTGC................................................... 21 1 1 10.00 10 10 0 0 0
............................................................................................TTCTTTGTCGACGAAACCTGCA.................................................. 22 1 1 10.00 10 8 2 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCAAA................................................ 24 2 1 9.00 9 8 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCAG................................................. 23 1 1 9.00 9 8 1 0 0
............................................................................................TTCATTGTCGACGAAACCTGC................................................... 21 1 1 9.00 9 8 0 1 0
............................................................................................TACGTTGTCGACGAAACCTGC................................................... 21 1 1 9.00 9 9 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCAC................................................. 23 1 1 9.00 9 9 0 0 0
...........................................................................................CTTCGTTGTCGACGAAACCTGC................................................... 22 1 1 9.00 9 8 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTGG................................................... 21 1 1 8.00 8 4 0 4 0
............................................................................................TTCGTTGTCGACGAAACCTC.................................................... 20 1 1 8.00 8 6 2 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCG.................................................. 22 1 1 8.00 8 6 1 1 0
............................................................................................TTCGTTGTCGACGGAACCTGC................................................... 21 1 1 8.00 8 7 0 1 0
.............................................................................................TTCTTGTCGACGAAACCTGC................................................... 20 2 1 7.00 7 7 0 0 0
............................................................................................TTAGTTGTCGACGAAACCTGC................................................... 21 1 1 7.00 7 7 0 0 0
............................................................................................TTCGTTGTCCACGAAACCTGC................................................... 21 1 1 7.00 7 7 0 0 0
............................................................................................TTTGTTGTCGACGAAACCTGCA.................................................. 22 1 1 7.00 7 1 6 0 0
............................................................................................TTCGTTGTCGACAAAACCTGCA.................................................. 22 1 1 7.00 7 5 0 2 0
............................................................................................TTCGTTGTCGACCAAACCTGCA.................................................. 22 1 1 7.00 7 7 0 0 0
............................................................................................TTCGTTGCCGACGAAACCTGC................................................... 21 1 1 7.00 7 7 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCTT................................................. 23 1 1 7.00 7 6 0 0 1
..............................................................................................CGTTGTCGACGAAACCTGCA.................................................. 20 0 1 7.00 7 1 0 6 0
............................................................................................TTCGTTGTCGACGACACCTGC................................................... 21 1 1 6.00 6 6 0 0 0
............................................................................................TTCGTTGTCGCCGAAACCTGC................................................... 21 1 1 6.00 6 5 0 1 0
............................................................................................TTCGTTGTGGACGAAACCTGC................................................... 21 1 1 6.00 6 4 1 1 0
............................................................................................TTCGTTGTCGACGAACCCTGC................................................... 21 1 1 6.00 6 6 0 0 0
............................................................................................TTCGTTGTCGACTAAACCTGCA.................................................. 22 1 1 6.00 6 6 0 0 0
............................................................................................TTCGTTGTCGACGAAAACTGC................................................... 21 1 1 6.00 6 6 0 0 0
............................................................................................TTCGTAGTCGACGAAACCTGCA.................................................. 22 1 1 6.00 6 6 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTTCA.................................................. 22 1 1 6.00 6 3 1 2 0
............................................................................................TTCGTTGTCGACGAAACCTGCC.................................................. 22 1 1 6.00 6 6 0 0 0
............................................................................................TTCGTTGTCGACGAAACCAGCA.................................................. 22 1 1 5.00 5 5 0 0 0
............................................................................................TTCGTTATCGACGAAACCTGCA.................................................. 22 1 1 5.00 5 5 0 0 0
.............................................................................................TCGTTGTCGACGAAACCTGCAT................................................. 22 0 1 5.00 5 4 0 1 0
............................................................................................TTCGTTGTCAACGAAACCTGCA.................................................. 22 1 1 5.00 5 4 1 0 0
............................................................................................TTCGTTTTCGACGAAACCTGC................................................... 21 1 1 5.00 5 5 0 0 0
............................................................................................TTCGCTGTCGACGAAACCTG.................................................... 20 1 1 5.00 5 4 0 1 0
.............................................................................................TCGTTGTCGACGAAACCTGCAA................................................. 22 1 1 5.00 5 3 0 2 0
............................................................................................TTCGTTCTCGACGAAACCTGC................................................... 21 1 1 5.00 5 5 0 0 0
..................................................CGGGTTTCGTTGGCAGCGGGCT............................................................................................ 22 1 1 4.00 4 2 2 0 0
............................................................................................TTCGTTGTCGTCGAAACCTGC................................................... 21 1 1 4.00 4 4 0 0 0
............................................................................................TTCGTTGTCGACGAAACCCGCA.................................................. 22 1 1 4.00 4 3 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTGTT.................................................. 22 2 1 4.00 4 4 0 0 0
............................................................................................TTCGTTGTCGACGAAACTTGC................................................... 21 1 1 4.00 4 4 0 0 0
............................................................................................TTCGTTGCCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 2 0 2 0
..................................................CGGGTTTCGCTAGCAGCGGACT............................................................................................ 22 2 1 4.00 4 4 0 0 0
............................................................................................GTCGTTGTCGACGAAACCTGC................................................... 21 1 1 4.00 4 4 0 0 0
............................................................................................TTCGTTGTCGACGAACCCTGCA.................................................. 22 1 1 4.00 4 4 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCAACC............................................... 25 2 1 3.00 3 2 0 0 1
..................................................CGGGCTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 3.00 3 0 2 0 1
............................................................................................GTCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 3 0 0 0
............................................................................................TTCGTTGTCGACGGAACCTGCA.................................................. 22 1 1 3.00 3 3 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGAT............................................................................................ 22 1 1 3.00 3 1 2 0 0
..................................................CGGGTTTCGTTAGTAGCGGGCT............................................................................................ 22 1 1 3.00 3 1 2 0 0
............................................................................................TTCCTTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 3 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGCC............................................................................................ 22 1 1 3.00 3 2 1 0 0
............................................................................................TTTGTTGTCGACGAAACCTGCAA................................................. 23 2 1 3.00 3 0 3 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCATT................................................ 24 1 1 3.00 3 2 0 1 0
............................................................................................TTCGTTGTCTACGAAACCTGCA.................................................. 22 1 1 3.00 3 3 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTT.................................................... 20 1 1 3.00 3 2 0 1 0
.............................................................................................TTGTTGTCGACGAAACCTGC................................................... 20 1 1 3.00 3 3 0 0 0
.............................................................................................TCTTTGTCGACGAAACCTGC................................................... 20 1 1 2.00 2 1 0 1 0
............................................................................................TTCGTTGTCGATGAAACCTG.................................................... 20 1 1 2.00 2 1 0 1 0
............................................................................................TTCGTTGTCGCCGAAACCTGCA.................................................. 22 1 1 2.00 2 0 0 2 0
.............................................................................................TCCTTGTCGACGAAACCTGC................................................... 20 1 1 2.00 2 1 1 0 0
...............................................................................................TTTGTCGACGAAACCTGC................................................... 18 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGAAACGTGC................................................... 21 1 1 2.00 2 2 0 0 0
............................................................................................TCCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 2 0 0 0
..................................................CGGGTTCCGTTAGCAGCGGGCT............................................................................................ 22 1 1 2.00 2 2 0 0 0
............................................................................................ATCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 1 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCTA................................................. 23 2 1 2.00 2 2 0 0 0
............................................................................................TTCGGTGTCGACGAAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0
........................................................................................GATCTTCGTTGTCGACGAAACCTGC................................................... 25 3 1 2.00 2 2 0 0 0
............................................................................................TTGGTTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 1 0 1 0
............................................................................................TTCGTTGTCGACGCAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGAAACAAGC................................................... 21 2 1 2.00 2 2 0 0 0
..............................................................................................CGTTGTCGACGAAACCTGC................................................... 19 0 1 2.00 2 1 0 1 0
............................................................................................TTCGTTGTCGACGAATCCTGC................................................... 21 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGAA.................................................. 22 1 1 2.00 2 1 1 0 0
............................................................................................TTCGTTGACAACGAAACCTGC................................................... 21 2 1 2.00 2 2 0 0 0
..............................................................................................CGTTGTCGACGAAACCTG.................................................... 18 0 1 2.00 2 0 0 2 0
............................................................................................TTCGTTGTACACGAAACCTGC................................................... 21 2 1 2.00 2 2 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGCCT............................................................................................ 22 1 1 2.00 2 1 1 0 0
............................................................................................TTCTTTGTCGACGAAACCT..................................................... 19 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTAGACGAAACCTG.................................................... 20 1 1 2.00 2 0 0 2 0
..................................................CGGGTTTTGTTAGCAGCGGGCT............................................................................................ 22 1 1 2.00 2 0 2 0 0
............................................................................................TTCGTTGTAGACGAAACCTGCA.................................................. 22 1 1 2.00 2 0 0 2 0
..................................................CGGGTCTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 2.00 2 0 2 0 0
............................................................................................TTCGTTGTCGATGAAACCTGCAA................................................. 23 2 1 2.00 2 0 2 0 0
............................................................................................TTCGTTGTTGACGAAACCTGCAT................................................. 23 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGCCGAAACCCGC................................................... 21 2 1 2.00 2 2 0 0 0
.............................................................................................TTCTTGTCGACGAAACCTGCA.................................................. 21 2 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGTAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTGCAA................................................. 23 2 1 2.00 2 2 0 0 0
............................................................................................CTCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 2 0 0 0
............................................................................................TTCGATGTCGACGAAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0
............................................................................................TTGGTTGTCGACGAAACCTGC................................................... 21 1 1 2.00 2 2 0 0 0
.................................................TCGGGTTTCGTTAGCAGCGGGCT............................................................................................ 23 0 1 2.00 2 2 0 0 0
............................................................................................TTCTTTGTCGACGAAACCTG.................................................... 20 1 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGAAACTTGCA.................................................. 22 1 1 2.00 2 1 1 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCCT................................................. 23 1 1 2.00 2 2 0 0 0
............................................................................................AACGTTGTCGACGAAACCTGC................................................... 21 2 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGACGACGAAACCTGCA.................................................. 22 1 1 2.00 2 1 1 0 0
............................................................................................TTCGTTGTCGACGATACCTGC................................................... 21 1 1 2.00 2 2 0 0 0
............................................................................................TTCATTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 2 0 0 0
.................................................TCGGGTTTCGTTAGCAGCGGG.............................................................................................. 21 0 1 2.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGACC................................................. 23 3 2 1.50 3 3 0 0 0
............................................................................................TTCGTTGTTGACGAAACCTGC................................................... 21 1 12 1.42 17 17 0 0 0
............................................................................................TTCGTTGTCGACGAAACCGAC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCATTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTACCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTAACGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCCACGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGTC.................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGAGGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAGACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACAT..................................................... 19 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACGTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................GACGTTGTCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGTCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
................................................................................................TTGTCGACGAAACCTGCA.................................................. 18 0 1 1.00 1 1 0 0 0
............................................................................................TTCCTTGTCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTATCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGG............................................................................................... 19 0 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCGCC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGAC.................................................. 22 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................... 23 1 1 1.00 1 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACCTGAAG................................................. 23 2 1 1.00 1 1 0 0 0
..................................................CGGGGTTCGTTAGCAGCGGGC............................................................................................. 21 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCATA................................................ 24 1 1 1.00 1 1 0 0 0
.................................................CGGGTTTTCGTTAGCAGCGGGCT............................................................................................ 23 3 1 1.00 1 0 1 0 0
...............................................................................................GTTGTCGACGAAACCTGCAA................................................. 20 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTACCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTAGTTGTCGACGAAACCTGCT.................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCAG.................................................... 20 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTAGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCCCC................................................... 21 2 1 1.00 1 1 0 0 0
........................................................................................GATCTTCGTTGTCGACGAAACCTGCA.................................................. 26 3 1 1.00 1 1 0 0 0
............................................................................................GTCGTTGTCGACGAAACCTGCGA................................................. 23 3 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTTGACGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGCGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
.............................................................................................TCGTTGTCGACGCAACCTGCA.................................................. 21 1 1 1.00 1 0 0 1 0
............................................................................................TTCGTTGTCGTCGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTAGACTAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGACACCTGA................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACAAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TGCGTTGTCGACGAAACCTGC................................................... 21 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTGGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTATCGACGAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAAACTGAAT................................................. 23 2 1 1.00 1 1 0 0 0
............................................................................................AACGTTGTCGACGAAACCTGCA.................................................. 22 2 1 1.00 1 1 0 0 0
.............................................................................................TCGTTGTCGACGAAACCT..................................................... 18 0 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCCGCC.................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTAGACGAAACCTGT................................................... 21 2 1 1.00 1 0 0 1 0
..................................................CGGGTTTCGTTAGCAGCG................................................................................................ 18 0 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAGCCTGCAA................................................. 23 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTACA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAGACCTG.................................................... 20 1 1 1.00 1 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACCTGTA.................................................. 22 1 1 1.00 1 1 0 0 0
..................................................CAGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGACGACACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................ATCGTTGTCGACGAAACCTCC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGCAACCTGA................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGCCGAACCCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAACCCT..................................................... 19 1 1 1.00 1 1 0 0 0
.............................................................................................TCGTTGGCGACGAAACCTGC................................................... 20 1 1 1.00 1 1 0 0 0
..................................................CGGGTTACGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGACGAAACCCTC................................................... 21 2 2 1.00 2 2 0 0 0
............................................................................................TTCGTTGTCGACGAGGCCTGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCCGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGACAAAACCTGCAA................................................. 23 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGAAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
..........................TAGGATAAGAATGCTCACTGA..................................................................................................................... 21 3 1 1.00 1 0 0 0 1
............................................................................................TTCGTTGTCGACGCACCCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTGGTCGCCGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTAC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGACGACTAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACATGCAT................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTAGTCGACGAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGCAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................GTCGTTGTCGACGAAACCTGT................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TCCGTTATCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................GGGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTACAAA................................................ 24 3 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGT.............................................................................................. 20 1 1 1.00 1 1 0 0 0
............................................................................................TACGTTGTCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................TTCGACGTCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTGCATTT............................................... 25 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTCGTCGACGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGCCGACGAAACCTGT................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTTGTTGTCGACGAAACCGGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGAC............................................................................................. 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCTTTGTCGACGAAACCTGCAA................................................. 23 2 1 1.00 1 1 0 0 0
............................................................................................TTATTTGTCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGCCGCCGAAACCTG.................................................... 20 2 1 1.00 1 0 0 1 0
............................................................................................TTCGCTGCCGACGAAACCTG.................................................... 20 2 1 1.00 1 0 0 1 0
..................................................CGGGTTTCGTTAGCATCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TCCGGTGTCGACGAAACCTGA................................................... 21 3 1 1.00 1 1 0 0 0
............................................................................................TTCGTTTTCGACGAAACCTG.................................................... 20 1 1 1.00 1 0 0 1 0
............................................................................................TTCGCTGTCGACGAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACAAAACCTGT................................................... 21 2 1 1.00 1 0 0 1 0
............................................................................................TTCGTTGTCGGCGAAACCTGA................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTATAGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCTTCGTCGACGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAGTCTGCA.................................................. 22 2 1 1.00 1 0 1 0 0
..................................................CGGGGTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGCCGAAACCTGCT.................................................. 22 2 1 1.00 1 0 0 1 0
...............................................................................................GTTGTCGACGAAACCTGCA.................................................. 19 0 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACCAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTGGACGAAACCTGCA.................................................. 22 1 1 1.00 1 0 0 1 0
..................................................CGGGTTTCGTTAGCAGCAGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
..................................................TGGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGAAGAAACCTGC................................................... 21 1 1 1.00 1 1 0 0 0
..................................................AGGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGCTGTCGACGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCACCGGGA............................................................................................. 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACAAGCA.................................................. 22 2 1 1.00 1 1 0 0 0
..................................................CCGGTTTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................CTCGTTGTCGACGAAACCCGCA.................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGCCGACGAAACCT..................................................... 19 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCTACGAAACCTTC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGACGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
.............................................................................................TTGTTGTCGACGAAACCTGCAA................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAGCCTG.................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACACGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TGCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 1.00 1 0 0 1 0
..................................................CGGGTTTCGTCAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCATTGTCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTCGCAGCGGGC............................................................................................. 21 1 1 1.00 1 1 0 0 0
...............................................................................................GTTGTCGACCAAACCTGCA.................................................. 19 1 1 1.00 1 1 0 0 0
..................................................CGGGATTCGTTAGCAGCGGGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCAACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCGC.................................................... 20 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGACACCCGC................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCCTTGTCGATGAAACCTGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCGGCGGGCT............................................................................................ 22 1 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGACGAAGCCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTTGACGAAACCTGCAA................................................. 23 2 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGGCGAAACCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAACCTCA................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACAAAACCTG.................................................... 20 1 1 1.00 1 0 0 1 0
............................................................................................TTCGTTGTCGACGAAACCAACA.................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCTTTGTCGACGAACCCTGC................................................... 21 2 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGTGCT............................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................CGGGCTTCGTTAGCAGCGGCCT............................................................................................ 22 2 1 1.00 1 0 1 0 0
............................................................................................TTCGTTGTCGAGGAAACCTGC................................................... 21 1 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGTT............................................................................................ 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCATTGTCGACGAAACCTGCAA................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................................................TTCTTGTCGACGAAACCTGCAT................................................. 22 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGAGGAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0
.........................................................................................ATCTTCGTTGTCGACCAAACCTGC................................................... 24 3 1 1.00 1 1 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGCTC........................................................................................... 23 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTCGTCGACGAAACCTGA................................................... 21 2 1 1.00 1 1 0 0 0
............................................................................................TTCGTTGTCGACGAAATCTGCA.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................TTCGTCGTCGACGAAACCTGCC.................................................. 22 2 1 1.00 1 1 0 0 0

Anti-sense strand reads

TGTTTCACGAGGAACGTTGAGGTTGAATCCTATTTGTAGGAGTGACTTCAGCCCAAAGCAATCGTCGCCCGACAAAATTATTTAAGTTGTTCAAGCAACAGCTGCTTTGGACGTACGACACACCTTTTAGTTGCGAGTTCCGGTGAATTCCTAGGTGCAAAGAC

************************************..(((.(((....(((((((((((((.(((((((((((((...........))).)))))))))).))))))))))).))...))).)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 M054

female body

 V113

male body
..........................................................................AAGTTATTTAGGTTCTTCAAG..................................................................... 21 3 10 0.10 1 0 1 0
............................................................................................................................................CGGTTAATTGCTAGGTGTAA.... 20 3 15 0.07 1 1 0 0
..........................................................................AAATTTTTTGAGTTGTCCAA...................................................................... 20 3 20 0.05 1 1 0 0
...........................TACTGTTTGTAGGGGTGAC...................................................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_10:1477734-1477897 - dse_18 confident ACAAA-G--------TGCTCCT-----TG-------------CAACTCCAACTTA-----GGA--------------TAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCACTTAAGGATCCACGTTTCTG
droSim2 x:1540994-1541157 - dsi-mir-981 Known_mirbase ACAAA-G--------TGCTCCT-----TG-------------CAACTGCAACTTA-----GGA--------------TAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCACCCAAAGATCCACGTTTCTG
dm3 chrX:1682859-1683021 - dme-mir-981 Known_mirbase ACAAA-G--------TGCTCCT-----TG-------------C-ACTGCAACTTA-----GGA--------------GAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCGCCCAAGGATTCACGTTTTTA
droEre2 scaffold_4644:1660942-1661114 - der_13 confident GCAAC----------TGCCACTGCAACTG-------------CAACTGCAACTTA-----AGAGGG-CACCAACTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCTAGGCCGCC-TCGGATCTAC-------
droYak3 X:1528043-1528214 - dya_89 confident ACAAA-A--------TGCTCCT-----TG-------------C------AACTTA-----AGAGAGAGACCAAGTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCGCCCTCGGATCTACGCTTGTA
droEug1 scf7180000408994:414293-414411 - ACTATAA--------AGCTCCT-----CG-----------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTACT--------TTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTTAA-------------------------
droBia1 scf7180000301760:4274663-4274819 - ATAAA-GGTATACGATACTCCT-----CAAAAGTGATTTTAAA-ATTATA----AAACGGAAA--------------TAAAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTCT--------TTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT----------------------------
droTak1 scf7180000415704:1276936-1277068 - GA--A-G--------TGATT-T-----TA------------AA-ATAATACCTAA-----GAA--------------CAAAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTACT--------TTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT----------------------------
droEle1 scf7180000491043:308403-308508 + AGA------------------------------------------------------------------------------AGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAGTCAACATTAAA-------------------------
droRho1 scf7180000779976:18412-18510 - AA-------------------------------------------------------------------------------AATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC-A--------ATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAATCAAC-------------------------------
droFic1 scf7180000453253:126102-126213 - ACAA----------------------------------------------------------------------------AAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTGT--------TATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAACTCAACATTACAAGC----------------------
droKik1 scf7180000302398:393014-393113 + AA-------------------------------------------------------------------------------AATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAAT--------------TTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAAACAACGTTCAA-------------------------
droAna3 scaffold_12929:1586944-1587049 + dan_9 confident AA-------------------------------------------------------------------------------AGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAACAACGTTTAA-------------------------
droBip1 scf7180000396543:52365-52478 + TTA---------------------------------------------------------TGT--------------GAATTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATGACAACGTTTAA-------------------------
dp5 XL_group1a:4258921-4259021 - dps-mir-981 Known_mirbase AA------------------------------------------------------------------------------AAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC-------------------------------
droPer2 scaffold_11:835055-835155 - dpe_26 confident AA------------------------------------------------------------------------------AAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC-------------------------------
droWil2 scf2_1100000004909:4683233-4683341 + dwi_23 confident ----------------------------------------------------------------------------------ATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCT----------------------------
droVir3 scaffold_12942:51500-51599 + dvi-mir-981 Known_mirbase TA-----------------------------------------------------------------------------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGTGGCAAC-------------------------------
droMoj3 scaffold_6328:4397483-4397588 + dmo_26 confident AAAAT-------------------------------------------------------------------------AGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTA--------AAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAAC-------------------------------
droGri2 scaffold_14853:795296-795391 + dgr_59 candidate-rescued -----------------------------------------------------------------------------------TCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGAGTCAACG------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
ACAAA-G--------TGCTCCT-----TG-------------CAACTCCAACTTA-----GGA--------------TAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCACTTAAGGATCCACGTTTCTGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................21113672.00136722452218713218
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2212713.00271340392762025
................................................................................................CGGGTTTCGTTAGCAGCGGGCT.....................................................................................................2211028.001028312501512
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................201551.0055115014396
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................231372.003721364349
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231201.0020115310173
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211162.00162610155
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................19194.0094120082
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21180.008010079
................................................................................................CGGGTTTCGTTAGCAGCGGGC......................................................................................................21171.0071031751
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21154.0054410112
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20150.0050240125
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................18126.002600224
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................22121.002110218
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19118.001816002
...............................................................................................TCGGGTTTCGTTAGCAGCGGGC......................................................................................................22116.001601015
.................................................................................................GGGTTTCGTTAGCAGCGGGCT.....................................................................................................21115.001500510
................................................................................................CGGGTTTCGTTAGCAGCGGG.......................................................................................................20111.00110047
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................2419.0090018
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................2319.0090018
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................2319.0090009
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................2118.0084004
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2018.0080026
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................2218.0081016
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2017.0076001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................2216.0060006
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAT..................................................2215.0051004
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2215.0052003
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTT...................................................2214.0040004
................................................................................................CGGGTTTCGTTAGCAGCGGGCC.....................................................................................................2213.0030012
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2413.0031002
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................2013.0031002
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCTA..................................................2312.0020002
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1912.0021001
....................................................................................................................................................CGTTGTCGACGAAACCTG.....................................................1812.0022000
...............................................................................................TCGGGTTTCGTTAGCAGCGGGCT.....................................................................................................2312.0020002
...............................................................................................TCGGGTTTCGTTAGCAGCGGG.......................................................................................................2112.0020002
..................................................................................................................................................TTCGTTGTCGACGAAACCTGACC..................................................2321.5030003
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTC...................................................2211.0010001
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................1811.0010001
................................................................................................CGGGTTTCGTTAGCAGCGG........................................................................................................1911.0010001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGAC...................................................2211.0010001
................................................................................................CGGGTTTCGTTAGCAGCGGGCTT....................................................................................................2311.0011000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATA.................................................2411.0010001
.....................................................................................................................................................GTTGTCGACGAAACCTGCAA..................................................2011.0010001
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1811.0010001
................................................................................................CGGGTTTCGTTAGCAGCG.........................................................................................................1811.0010001
................................................................................................CGGGTTTCGTTAGCAGCGGT.......................................................................................................2011.0010001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATTT................................................2511.0010001
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................1911.0010001
..................................................................................................................................................TTCGTTGTCGACGAAACCGC.....................................................2011.0010001
..................................................................................................................................................TTCGTTGTCGACGAAACCTCA....................................................2111.0010001
................................................................................................CGGGTTTCGTTAGCAGCGGGCTC....................................................................................................2311.0010001
droSim2
ACAAA-G--------TGCTCCT-----TG-------------CAACTGCAACTTA-----GGA--------------TAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCACCCAAAGATCCACGTTTCTGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................20119993.001999319743574731410800200100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................2119626.0096269295346554112001814012308002
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2217704.0077047016503825022010526505906001
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................1913350.00335029028481441100000000102
................................................................................................CGGGTTTCGTTAGCAGCGGGCT.....................................................................................................2211660.001660113054080060000011001000
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................1811162.0011629602130917800000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231893.0089384124520000020100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................221429.004294192700000010000000
................................................................................................CGGGTTTCGTTAGCAGCGGGC......................................................................................................211328.0032827943500800000200000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................221286.0028625732600000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGCC.....................................................................................................221226.0022617704900000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................231172.001721670410000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................211154.001541500310000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................221131.001311212700000000100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................231100.00100940010400000100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211100.00100972010000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21174.0074740000000000000000
...............................................................................................TCGGGTTTCGTTAGCAGCGGGC......................................................................................................22173.0073710100000000100000
................................................................................................CGGGTTTCGTTAGCAGCGGGCG.....................................................................................................22155.00553402100000000000000
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................18136.0036321300000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCG......................................................19132.0032320000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCC......................................................19232.0064640000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21129.0029210240200000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20126.0026210040100000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19123.0023221000000000000000
......................................................................................................................................................TTGTCGACGAAACCTGCAA..................................................19121.0021210000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................23121.0021200100000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................24119.0019160100000110000000
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................19119.0019190000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................22117.0017160100000000000000
................................................................................................CGGGTTTCGTTAGCAGCG.........................................................................................................18116.0016000021400000000000
....................................................................................................................................................CGTTGTCGACGAAACCTG.....................................................18113.0013130000000000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................18111.0011110000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGG........................................................................................................19110.0010000001000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1819.00950000400000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2419.00990000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGCTT....................................................................................................2318.00880000000000000000
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1917.00750000100000100000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2017.00770000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................2017.00760010000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2017.00770000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGCTA....................................................................................................2315.00511200000000100000
..................................................................................................................................................TTCGTTGTCGACGAAACT.......................................................1815.00550000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCACT.................................................2415.00550000000000000000
....................................................................................................................................................CGTTGTCGACGAAACCTGCAA..................................................2115.00550000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGG.......................................................................................................2015.00520000300000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAC..................................................2214.00440000000000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGCAA..................................................2014.00430100000000000000
...............................................................................................TCGGGTTTCGTTAGCAGC..........................................................................................................1813.00310000200000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGAC.....................................................................................................2213.00330000000000000000
...............................................................................................TCGGGTTTCGTTAGCAGCG.........................................................................................................1913.00300000300000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTA.....................................................2013.00330000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGG......................................................................................................2113.00330000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAAA................................................2512.00220000000000000000
.................................................................................................GGGTTTCGTTAGCAGCGGGCT.....................................................................................................2112.00200200000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCACA.................................................2412.00220000000000000000
...............................................................................................TCGGGTTTCGTTAGCAGCGGGCC.....................................................................................................2312.00220000000000000000
...............................................................................................TCGGGTTTCGTTAGCAGCGGGCT.....................................................................................................2312.00220000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGGG.....................................................................................................2212.00210100000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCT...................................................2112.00220000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCC...................................................2112.00220000000000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGGC.....................................................................................................2212.00220000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATC.................................................2411.00110000000000000000
dm3
ACAAA-G--------TGCTCCT-----TG-------------C-ACTGCAACTTA-----GGA--------------GAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCGCCCAAGGATTCACGTTTTTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................221126486.00126486000077021131477221461804000472390000600067710441104023111200010000000000001010007240000000000000000066342222194271192279080515687501393710114546640132442175295507728306763312962583218267671263101332121153661482109611448446829511392812751041378125000000020015130300100100000000000000061845405035351372857449711044268840201266683010000078901808000060600000000000000000132112130210370031138005965055430131064374115121671000282200120367280018343227100104302050200218415823541915181314216382000167022560003022100011200231146740601023400
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................211114701.0011470100005083010533270723020970000504147178296923781680000000101000000100000112000000000000000001010870701360111717127711877293458035111181754112109981621563585040101471315263522911534121131800209909692646938738577495900000000009135000100300000000000000036803390019532052873272482321081472145677968600000823154125000018019000000000000000003601400000000500110000132201242725651713142471873912125455109638140030183271085361061007254101001008011218925512198481543159365220020217112421602001247140011169068393161478121920014800
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................20124654.002465400005400000030014005600005000219359739196600000000000000000000001100000000000000000000002466200007421523113057214170148226530082686391142180565102716612310441364835160000000000000000000000000000000000001679175407105479111234010892622009308417600000239860100005000000000000000000000020000000000000000210161553000463151220000241000001110223100000000000010013013715435801331100005024000000000000000019600100000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................2318318.008318000076101170132010022300000000000000000000000000000000000000000000000000000000021211251617710152873131328340892510253161265840094983755110612028131951501401412340714854800000000002000000000000000000000000051048202311010024471734210032612000002783000000000000000000000000000100000000005005915002001200100191022110000012001010100192500002110100000002912216703322000004041000000000002002006500000000100
................................................................................................CGGGTTTCGTTAGCAGCGGGCT.....................................................................................................2216481.006481000020010000000000000000010540000000000000000000000000003000000000000000000000001110340070125241500217125600001233032610223101111810300209140000000000120371000000005000000000000335102895202812175652995200000747060000109000000000000000001001000000015013000055540155740142840101010294201004501201549311001667170023006474202481082181802485012105022351530123135040333943665241477275103972913186432182641042041400
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATC.................................................2415384.005384000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033752008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................1913437.003437000000000000000000100000010018731603300000000000000000000000000000000000000000000007000000011037305341212201353100045144200030201422132101043698105000000000000000000000000000000000000383465022301146993518168114230000055000000000000000000000000000000000000000000000000002150000080000000400000000010100000000000000009413340010000000000000000000000000000800000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................2211906.001906000000000000001000000000000000000000000000000000000000000000000000000000000000006601020030013511512311200032100011310010001728016622908422020711225174000000000000000000000000000000000000182740531011002060700000013000000000000000000000000000000000000000000000001003360000432020000210000202006120000000000000000100111100000000101000000000000000000100000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................2311898.0018980000250000001002000500000000000000000000000000000000000000110000000000000000010002000010020068701398640281556200013046016100001411060972503312813000000000010000000000000000000000000112105051002632430331331000009000000000000000000000000000000000000000100017100000011702102910907000011600001010080100000000000000011418143400011000003020000000100000000006500100000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................2111347.001347000016000000100010000000000000000000000000000000000000000000000000000000000000000390000000100540122110000820003110001000422150140641002511624000000000000000000000000000000000000384302400264415629206710000097300000000100000000000000000000000000000000000000001261000668080000011000011000311000020000000000048294791001000000030030000000000001010113100000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................2211044.0010440000300000000000012000000000000000000000000000000000000000000000000000000000120010031300067111930537110103200100227530101140156020516016123900000000000000000000000000000000000080720420011511921703300000070000000100000000000000000000000000000000000110001012200041300000000000020000601000000000000000012240200000000100000000000000000000700000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGC......................................................................................................211823.008230000000000000003000000000003100000000000000000000000000000000000000000000000000000000001000000000000000000000000000011000010000000000000000010800000000000000000000006202450153115000000002020000002000000000000001000000000000000071000024035710012501002044110167010064250001000000000220311417323901310000012023100003515180411703860212210021361200
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................211692.00692000025000110200000010000000000000000000000000000000000000000000000000000000000000200000010003031301001054000220300000021521061017102509061000000000000000000000000000000000000021230120011260151440700000006100000000000000000000000000000000000000000000100000113000031803000009000000000000000000001000000016623160000000000200000000000000000000500000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................211633.006330000400000010000000000000000000000000000000000000000000000000000000000000000000011000100730219085603002216100022710051200087010125012091400000000000000000000000000000000000043250150027270370801200000042000000000000000000000000000000000000000000000000000300001300000001000010000000000000000000000002220001000000100000000000000000000300000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................221436.00436000010101010400200030000000000000000000000000000000000000000000000000000000000001161012002001300119031125850002610071110184010111040710000000000000000000000000000000000003030016005110801003410000023000000000000000000000000000000000000000000000000000200003302000001000000000003000000000000000025140000000000000000000000000000000100000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................201362.0036200002000000000000000000000001000000000000000000000000000000000000000000000000000200000030003002300001042000000100000323220707515070640000000000000000000000000000000000001631070019230221807000000220000000000000000000000000000000000000000000000000009000021101000003000000000000000000000000000042640000000000000000000000000000000500000000000
................................................................................................CGGGTTTCGTTAGCAGCGGG.......................................................................................................201287.00287000000000000000000000000010000010110000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000140110012000701000000000000010000000000000000000000000000000110000000000010001601000000000019000030210000000000000000342121000160000010000000003300253171112811201010000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................231276.002760000200000010000001000000000000000000000000000000000000000000000000000000000000080000002000903150100019000001001600000204000105050613000000000000000000000000000000000000191501000250203060000006000000000000000000000000000000000000000000022000000000000300000000000001000001000000000000000010020000000000100000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................181239.00239000000000000000000000000000031220300000000000000000000000100000000000000000000002000000000060029000000471000500000000030000000039820000000000000000000000000000000000001140210622231815160000036000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................201229.0022900000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000310000000324128210000000000000000000000000000000000001080500000101010000003000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000060000000000000000000000000000000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................221202.002020000200000000000000000000000000000000000000000000000000000000000000000000000000030000004003110142211207300001804040130010000000020100000000000000000000000000000000000001060500530704010000007100000000000000000000000000000000000000000000000000000000301000011000000000100000000000000000001100000000100000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................211195.00195000030000000001000000000000000000000000000000000000000000000000000000000000000001200000000007003000000700000000100000280100123000230000000000000000000000000000000000001260600750201902930000017000000000000000000000000000000000000000000000000000400002700000003000000000000000000000000000012220000000000000000000000000010000000000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................181169.0016900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321060245010310000000000000000000000000000000000008130500970400010000003100100000000000000000000000000000000000000000000100050000040000000100000000000000000000000000000441100000000000000000000000000000100400000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................241163.0016300001000000000000010000000000000000000000000000000000000000000000000000000000000200000000003011500010039100080102000002000000000040000000000000000000000000000000000000121305001408080120000005000000000000000000000000000000000000000000011000000000003101000002000000000000000000000000000010100100000000100000000000000000000100000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA..................................................231140.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000400000020006011300000020000000000000122001000002322370000000000000000000000000000000000001570400000000000000000000000000000000000000000000000000000000000000000000200000500000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCGGGTTTCGTTAGCAGCGGGC......................................................................................................221137.00137000000000000000100000000000014011000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000121016011110000000000000000000000000000000000000000000000001000000000030000020000001000000110000000000000000000001174401100000002010000000100000302025400010000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................231113.0011300003000010000000000000000000000000000000000000000000000000000000000000000000000100000020101009010000240000110302010000300000002001000000000000000000000000000000000000690300200014080000002000000000100000000000000000000000000000000101000000000001101000000000000000200000000000000000000100000000000000000000000000000000300000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTT...................................................221106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000600000000005000010000000000000000001021000000000000000000000000000000000000030100020300020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGATC..................................................231106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19198.009800000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000120000000000000010000000031300000000000000000000000000000000000001570100411214040200000013000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................19187.008700000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000500001010100100000000000000000000000000000000000058061071307000000000013000000000000000000000000000000000000000000000000100001000000000000000000000200000130000000000002140100000000000000000000000000000000000000000
................................................................................................CGGGTTTCGTTAGCAGCG.........................................................................................................18179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000100000000000000000000000000000000000000000000000000001000000010000000100000000000000000000000000000000000000000000000000000000000000000000007000024010000000000000000221100204000000000000000020000000012200000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................20168.00680000100000000000000000000000000000000000000000000000000000000000000000000000000030000000000100100000000000000000000020000000021530000000000000000000000000000000000006803005302010420000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTA.....................................................20161.0061000030000000000000000000000000000000000000000000000000000000000000000000000000004000000000030000000005000000000000002010000000011000000000000000000000000000000000000540400040325030000008000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001010000000000000000000000000000000000000000000
.................................................................................................GGGTTTCGTTAGCAGCGGGCT.....................................................................................................21158.00580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000302001010000000000010000000000000000000000000000000000000000000000000000000000000000000000101001000000100000000000432125000000002021000100000001403001200000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCTA..................................................23152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000040000000100100130000019000110001000001000000101010000000000000000000000000000000000000360500000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.................................................24152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000001300002000000000110000000000100000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000001213000000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................20148.0048000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020013204000000000000000000000000000000000000000000000000000000000000000320200330500010000006000000000000000000000000000000000000000000000002000000000000000000000000000011000030000000000000210000000000000000000000000000000000000000000
droEre2
GCAAC----------TGCCACTGCAACTG-------------CAACTGCAACTTA-----AGAGGG-CACCAACTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCTAGGCCGCC-TCGGATCTAC-------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................21121489.00214894587911479954196520
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2214377.004377978278584633124430
................................................................................................CGGGTTTCGTTAGCAGCGGGCT.....................................................................................................2211148.00114821745621310090
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................201730.00730235075024180
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231337.00337361051202380
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................231235.0023522335011740
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................211113.00113102030080
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211106.00106301901830
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21196.009610600890
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20195.0095460300460
................................................................................................CGGGTTTCGTTAGCAGCGGGC......................................................................................................21184.008413620720
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................19164.0064160300450
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................18140.004010000390
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................22133.0033021800130
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................22128.002853320150
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19126.002624000020
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................19119.001930100150
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................23118.00182540070
...............................................................................................TCGGGTTTCGTTAGCAGCGGGC......................................................................................................22117.001700100160
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................23116.001630300100
.................................................................................................GGGTTTCGTTAGCAGCGGGCT.....................................................................................................21114.001400101120
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................22112.001200100110
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................19112.00121020090
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................20110.00104010050
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................2019.0090010080
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................2418.0080010070
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2218.0081110050
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................1818.0081500020
................................................................................................CGGGTTTCGTTAGCAGCGGGCC.....................................................................................................2218.0080800000
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2016.0061000050
................................................................................................CGGGTTTCGTTAGCAGCGGG.......................................................................................................2015.0050010040
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................1815.0050000050
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2414.0041010020
................................................................................................CGGGTTTCGTTAGCAGCGGGT......................................................................................................2113.0030010020
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA..................................................2313.0030030000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.................................................2413.0030000030
...................................................................................................................................................TCGTTGTCGACGAAACCTGCT...................................................2113.0031000020
..................................................................................................................................................TTCGTTGTCGACGAAACCTCA....................................................2112.0020000020
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1812.0022000000
....................................................................................................................................................CGTTGTCGACGAAACCTG.....................................................1812.0021000010
................................................................................................CGGGTTTCGTTAGCAGCGGGA......................................................................................................2112.0020000020
...................................................................................................................................................TCGTTGTCGACGAAACCTGA....................................................2012.0021000010
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAG..................................................2212.0021000010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAGT.................................................2412.0020010010
.....................................................................................................................................................GTTGTCGACGAAACCTGCAA..................................................2012.0020010010
....................................................................................................................................................CGTTGTCGACGAAACCTGCAA..................................................2112.0021000010
...............................................................................................TCGGGTTTCGTTAGCAGC..........................................................................................................1812.0020000020
..................................................................................................................................................TTCGTTGTCGACGAAACTGC.....................................................2061.3380000080
....................................................................................................................................................CGTTGTCGACGAAACCTGCC...................................................2011.0010000010
...................................................................................................................................................TCGTTGTCGACGAAACCTGCATT.................................................2311.0011000000
droYak3
ACAAA-A--------TGCTCCT-----TG-------------C------AACTTA-----AGAGAGAGACCAAGTGCAAAGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTCAAGGCCGCCCTCGGATCTACGCTTGTASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2215137.005137167248218996436964640010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................2114500.0045001798316543696691093120000
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................2012374.00237420141191618913500000
................................................................................................CGGGTTTCGTTAGCAGCGGGCT.....................................................................................................221823.008234961167117132630000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231451.00451243161084285200000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................221225.00225189713051100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................231176.0017614922102200000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................231153.00153436133315700000
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................191149.001491041410141600000
................................................................................................CGGGTTTCGTTAGCAGCGGGCC.....................................................................................................221146.001469205400000000
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................181121.001218803300000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................221108.0010855016082900000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................21194.00945100276100000
................................................................................................CGGGTTTCGTTAGCAGCGGGC......................................................................................................21191.00915401892520010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................22171.0071621102500000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21158.0058446110600000
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20144.0044140000300000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................21131.0031290100100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................23121.0021112103400000
................................................................................................CGGGTTTCGTTAGCAGCGGGCG.....................................................................................................22117.0017170000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21114.001480112200000
................................................................................................CGGGTTTCGTTAGCAGCGGGCTT....................................................................................................2319.00980100000000
..................................................................................................................................................TTCGTTGTCGACGAAACCC......................................................1918.00880000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................1918.00825001000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2218.00880000000000
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1917.00734000000000
...............................................................................................TCGGGTTTCGTTAGCAGCGGGC......................................................................................................2217.00740002100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................2016.00601101300000
..................................................................................................................................................TTCGTTGTCGACGAAAC........................................................1716.00600000600000
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................1816.00620000400000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2015.00503100100000
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1815.00505000000000
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................1815.00541000000000
................................................................................................CGGGTTTCGTTAGCAGCGGG.......................................................................................................2014.00400010200010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCACA.................................................2414.00440000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAT..................................................2214.00402000200000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAC.................................................2414.00410100200000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA..................................................2314.00410101100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................2413.00310100100000
..................................................................................................................................................TTCGTTGTCGACGAAACCG......................................................1913.00330000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.................................................2413.00300200100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGAC...................................................2212.00220000000000
................................................................................................CGGGTTTCGTTAGCAGCGGGT......................................................................................................2112.00210010000000
.....................................................................................................................................................GTTGTCGACGAAACCTGCAA..................................................2012.00210001000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTT...................................................2212.00220000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATA.................................................2412.00220000000000
.................................................................................................GGGTTTCGTTAGCAGCGGGCT.....................................................................................................2112.00210010000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTA.....................................................2012.00210001000000
................................................................................................CGGGTTTCGTTAGCAGCGGGAC.....................................................................................................2212.00210100000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2412.00210000100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCTC..................................................2311.00110000000000
droEug1
ACTATAA--------AGCTCCT-----CG-----------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTACT--------TTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTTAA-------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAAA-GGTATACGATACTCCT-----CAAAAGTGATTTTAAA-ATTATA----AAACGGAAA--------------TAAAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTCT--------TTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT----------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GA--A-G--------TGATT-T-----TA------------AA-ATAATACCTAA-----GAA--------------CAAAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTACT--------TTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT----------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGA------------------------------------------------------------------------------AGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAGTCAACATTAAA-------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AA-------------------------------------------------------------------------------AATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC-A--------ATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAATCAAC-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACAA----------------------------------------------------------------------------AAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTGT--------TATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAACTCAACATTACAAGC----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AA-------------------------------------------------------------------------------AATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAAT--------------TTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAAACAACGTTCAA-------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AA-------------------------------------------------------------------------------AGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAACAACGTTTAA-------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................21120626.0020626831139539455018608
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2212509.002509120527193614659
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................201964.00964451201782331
................................................................................................CGGGTTTCGTTAACAGCGGGCT.....................................................................................................221670.0067012312292603
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211318.003185001146193
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................211224.0022400070217
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231162.001623039120072
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................211131.0013113100000
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................191130.00130292075024
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................201108.0010895000013
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................23164.0064112021426
................................................................................................CGGGTTTCGTTAACAGCGGGC......................................................................................................21160.00601304052
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................22137.00377118020
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19131.00313100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................22121.0021510708
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................18117.00171000016
.................................................................................................GGGTTTCGTTAACAGCGGGCT.....................................................................................................21115.00150020013
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................20114.0014300407
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................21114.00141001012
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................20111.00111100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................22110.0010500401
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................18110.0010090001
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2019.009000009
................................................................................................CGGGTTTCGTTAACAGCGGGCC.....................................................................................................2219.009080001
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1919.009600003
................................................................................................CGGGTTTCGTTAACAGCGGG.......................................................................................................2018.008000008
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................2316.006100203
................................................................................................CGGGTTTCGTTAACAGCG.........................................................................................................1814.004000103
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................2314.004040000
....................................................................................................................................................CGTTGTCGACGAAACCTG.....................................................1814.004400000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................2414.004130000
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1813.003300000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTT...................................................2213.003000201
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2213.003300000
...................................................................................................................................................TCGTTGTCGACGAAACCTGT....................................................2012.002100100
..................................................................................................................................................TTCGTTGTCGACGAAACCTTA....................................................2112.002000002
..................................................................................................................................................TTCGTTGTCGACGAAAC........................................................1712.002000200
..................................................................................................................................................TTCGTTGTCGACGAAACCC......................................................1912.002000002
.................................................................................................................................................GTTCGTTGTCGACGAAACCTGCA...................................................2312.002200000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT.................................................2412.002100001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATTAG...............................................2612.002000002
................................................................................................CGGGTTTCGTTAACAGCGGT.......................................................................................................2011.001000010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGGT...................................................2211.001000001
................................................................................................CGGGTTTCGTTAACAGCGGGA......................................................................................................2111.001000001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2411.001000100
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAT..................................................2211.001000100
.............................................................................................................................................ACAAGTTCGTTGTCGACGAAACCTGC....................................................2611.001000001
droBip1
TTA---------------------------------------------------------TGT--------------GAATTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATGACAACGTTTAA-------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AA------------------------------------------------------------------------------AAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC-------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................21111733.001173321527144774616518701100268
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2219261.009261220469095098194789301219
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................2012235.00223551263672802290004
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231430.004301863722856100012
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................191407.0040726823110240000
................................................................................................CGGGTTTCGTTAACAGCGGGCT.....................................................................................................221291.00291125919148584000
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................181285.00285019275000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................211185.00185017608010000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211157.0015701502801131000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................231154.0015401801091240002
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................201143.00143013802030000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................221140.0014001241004180002
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................221129.00129043994190000
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................191125.00125012401000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................231112.0011207794040000
..................................................................................................................................................TTCGTTGTCGACGAAACCC......................................................19146.004600046000000
................................................................................................CGGGTTTCGTTAACAGCGGGC......................................................................................................21127.002700231370002
................................................................................................CGGGTTTCGTTAACAGCGGGCC.....................................................................................................22123.002300167000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21118.001804040100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................23118.00180223030008
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................20115.001501002030000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................21113.001301010200000
................................................................................................CGGGTTTCGTTAACAGCGGG.......................................................................................................20112.00120002190000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................22112.001201001010000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................20110.00100900010000
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................19110.00100603000001
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1818.0080800000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2417.0070114000001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................2217.0070401020000
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................1817.0070201220000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTT...................................................2216.0060201030000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................2415.0050013010000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA..................................................2315.0050103010000
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................1915.0050001100003
...................................................................................................................................................TCGTTGTCGACGAAACCTGT....................................................2013.0030300000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTA.....................................................2013.0030100020000
....................................................................................................................................................CGTTGTCGACGAAACCTG.....................................................1812.0020200000000
.................................................................................................GGGTTTCGTTAACAGCGGGCT.....................................................................................................2112.0020000110000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCC..................................................2312.0020101000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGAC...................................................2212.0020011000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCC...................................................2112.0020200000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAC..................................................2212.0020200000000
................................................................................................CGGGTTTCGTTAACAGCGG........................................................................................................1912.0020000011000
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2011.0010001000000
droPer2
AA------------------------------------------------------------------------------AAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAAC-------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................2113596.0035962637411113461630109
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2211470.001470126287505164883
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................201616.006162426011341970
................................................................................................CGGGTTTCGTTAACAGCGGGCT.....................................................................................................221342.0034214112475983
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211202.00202090351517
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231114.001142515030440
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................19147.004712209150
................................................................................................CGGGTTTCGTTAACAGCGGGC......................................................................................................21144.004418027170
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20144.00440410210
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................23137.003715115141
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21130.00300270030
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................22130.00301300980
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19125.00251230100
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................22124.00241141350
................................................................................................CGGGTTTCGTTAACAGCGGG.......................................................................................................20120.00200006113
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21119.00190107101
................................................................................................CGGGTTTCGTTAACAGCGGGCC.....................................................................................................22111.0011900101
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................1919.009210222
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1918.008020600
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................2317.007120220
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................2117.007230110
................................................................................................CGGGTTTCGTTAACAGCGGGCG.....................................................................................................2216.006600000
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................1815.005001220
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................2215.005200120
..................................................................................................................................................TTCGTTGTCGACGAAACCTCT....................................................2114.004000220
................................................................................................CGGGTTTCGTTAACAGCGG........................................................................................................1913.003000030
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2213.003020100
.................................................................................................GGGTTTCGTTAACAGCGGGCT.....................................................................................................2113.003001020
..................................................................................................................................................TTCGTTGTCGACGAAACCTTT....................................................2112.002010010
................................................................................................CGGGTTTCGTTAACAGCG.........................................................................................................1812.002000020
................................................................................................CGGGTTTCGTTAACAGCGGGT......................................................................................................2112.002000110
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................1812.002200000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2012.002010010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................2412.002000110
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTT...................................................2212.002000110
...............................................................................................TCGGGTTTCGTTAACAGCGGGC......................................................................................................2212.002000110
...................................................................................................................................................TCGTTGTCGACGAAACCT......................................................1812.002020000
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................2012.002000200
................................................................................................CGGGTTTCGTTAACAGCGGT.......................................................................................................2012.002000020
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTC...................................................2211.001000100
..................................................................................................................................................TTCGTTGTCGACGAAACCTGGC...................................................2211.001010000
..................................................................................................................................................TTCGTTGTCGACGAAACCTCA....................................................2111.001010000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGTTC..................................................2311.001000010
......................................................................................................................GTTATGAATA--------AATCAACAAG.........................................................................2011.001000010
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2011.001000010
droWil2
----------------------------------------------------------------------------------ATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCT----------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................21118076.001807644012001826113196
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2219560.0095606753685106281484
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................2015515.00551552657205173
................................................................................................CGGGTTTCGCTAGCAGCGGACT.....................................................................................................2212100.00210055320604941
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231784.007846443201989
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................191432.00432402100020
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................181326.003263250001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................221196.001961881124
................................................................................................CGGGTTTCGCTAGCAGCGGAC......................................................................................................211170.0017014700815
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................231122.001221211000
...............................................................................................TCGGGTTTCGCTAGCAGCGGACT.....................................................................................................231109.001093301867
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21182.00821020070
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................22178.0078740004
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................23175.00752650440
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21168.0068658004
...............................................................................................TCGGGTTTCGCTAGCAGCGGAC......................................................................................................22166.00664500021
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................21157.00571500141
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................21151.0051490002
................................................................................................CGGGTTTCGCTAGCAGCGGACC.....................................................................................................22147.0047440012
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................22142.0042331008
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20135.00352170016
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................19125.0025500020
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................18123.0023300119
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................23121.0021180003
.................................................................................................GGGTTTCGCTAGCAGCGGACT.....................................................................................................21120.0020000515
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................19118.0018400014
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................18114.0014130001
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA.................................................24114.0014130001
...............................................................................................TCGGGTTTCGCTAGCAGCGGA.......................................................................................................21113.0013000013
................................................................................................CGGGTTTCGCTAGCAGCGGACG.....................................................................................................22112.0012120000
......................................................................................................................................................TTGTCGACGAAACCTGCAA..................................................1918.00880000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2018.00831004
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2017.00701015
.....................................................................................................................................................GTTGTCGACGAAACCTGCAA..................................................2016.00640002
......................................................................................................................GTCATGATAAATGTGAAAAACA...............................................................................2216.00620004
..................................................................................................................................................TTCGTTGTCGACGAAACCC......................................................1925.5011110000
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................1915.00503002
..................................................................................................................................................TTCGTTGTCGACGAAACCG......................................................1914.00440000
.................................................................................................................................................GTTCGTTGTCGACGAAACCTGCC...................................................2314.00440000
................................................................................................CGGGTTTCGCTAGCAGCGGA.......................................................................................................2014.00400004
.................................................................................................................................................GTTCGTTGTCGACGAAACCTGC....................................................2213.00300030
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCACT.................................................2413.00330000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2213.00320001
.................................................................................................................................................GTTCGTTGTCGACGAAACCTGCT...................................................2313.00330000
...............................................................................................TCGGGTTTCGCTAGCAGCGG........................................................................................................2013.00310002
...............................................................................................TCGGGTTTCGCTAGCAGCGGACC.....................................................................................................2312.00220000
................................................................................................CGGGTTTCGCTAGCAGCGGAA......................................................................................................2112.00200002
....................................................................................................TTTCGCTAGCAGCGGACT.....................................................................................................1812.00220000
......................................................................................................................................................TTGTCGACGAAACCTGCAT..................................................1912.00220000
...............................................................................................TCGGGTTTCGCTAGCAGCGGAT......................................................................................................2212.00200002
..................................................................................................................................................TTCGTTGTCGACGAAACCTCA....................................................2112.00201010
....................................................................................................TTTCGCTAGCAGCGGACC.....................................................................................................1811.00110000
......................................................................................................................................................TTGTCGACGAAACCTGCGA..................................................1911.00110000
......................................................................................................................GTCATGATAAATGTGAAA...................................................................................1811.00110000
droVir3
TA-----------------------------------------------------------------------------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGTGGCAAC-------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................22110262.00102622510156324420310801000001154741281577543286308299390470143840321853202770010250010000000000102122201875870001833910331281016920221610
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................2117933.0079331510733331290290467350001738527272613427231128078670020099111481441189000014000001000000100011002012349000510429000010936
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................2013543.003543301553169105000000001651687317513710843073450100026728411860100600000000000000000000125000000132100010000
................................................................................................CAGATTTCGTCAGCAGCGGGCT.....................................................................................................2212349.002349591635111602314090000191013211743161400000111141902300000130110100006265127421380491401900001505124211401
................................................................................................CAGATTTCGTCAGCAGCGGGC......................................................................................................211974.0097423806820100010000421200121100000321401400000200000000000010310752521100000002000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................191381.003812237421000000000078913510182000000110002000000000000000000000006004000000003000000010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................231357.0035705113600000000002520612540192112101452811241030000000000000000000001190000201763520303761712
................................................................................................CAGATTTCGTCAGCAGCGGGCC.....................................................................................................221266.002661124905000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................TCTACATTGAACTCAGATTTCGTCAGC.............................................................................................................271198.0019800000000100000000000000003300017000014700000000000000000000000000000000000000000000
...................................................................................TCTACATTGAACTCAGATTTCGTCAGCA............................................................................................................281163.0016300000000000000000000000002000010000013300000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................221162.00162091501000000003283611111456000002004010000040000000000000000000010100010000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTT....................................................................................................231146.00146196300000010000010111027000003401020000040000000000000000000012600000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................221124.00124177510000000000150212013001002001000000000000000000000000020013000001000201000011
................................................................................................CAGATTTCGTCAGCAGCG.........................................................................................................181111.0011129900000000000000000010000000000202000000000000000000000000005000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGA...........................................................251110.001100000000050000000000000000120001500007800000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................181106.0010619105000000000010100001000000000000000000000000000000001111100000000000100000000
................................................................................................CAGATTTCGTCAGCAGCGGG.......................................................................................................20196.00961124004000000001011113200000079160131000030000000000000000000020500000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................21186.008605200300000000690363049000002100020000010000000000000000000030000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGG........................................................................................................19178.007833610040000000000000060000000120108000005000000000000000000009200000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................23176.0076385000000000006232231220000021121000000000000000000000000020016100000000000001100
................................................................................................CAGATTTCGTCAGCAGCGGGCG.....................................................................................................22172.007246400000000000000000000000000000000000000000000000000000000301000000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21166.006601600000000000012000000100000000100000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................22157.005724610000000000000001000000000010000000000000000000000000000006000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAA..........................................................26153.0053000000002000000000000000013000700003100000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGT.......................................................................................................20145.0045012000204000000000000200000000002010000000000000000000000000014800000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20144.004400380000000000000100000200000000000000000000000000000000000003000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAA.........................................................27144.004400000000000000000000000006000200003600000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGT........................................................................................................19137.0037022100000000000100000010000001000000000010000000000000000000010000000000000000000
...................................................................................TCTACATTGAACTCAGATTTCGTCA...............................................................................................................25136.003600000000000000000000000006000600002400000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGTT.......................................................................................................20133.0033016000100000000001001210000000000000000000000000000000000000011000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................21129.002902610000000000001000000000000000000000000000000000000000000001000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTC....................................................................................................23126.00269200010000000000000010000000100202000002000000000000000000300200000010000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................23125.002511022000000000012000001000000010000000000000000000000000000001000010000000001002
................................................................................................CAGATTTCGTCAGCAGCGGGT......................................................................................................21121.00210520000104000001001000100000010100000000000000000000000000004000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21121.00210310000000000011104102000000000000000000000000000000000000007000000000000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................18120.00200100000000000013112102200000000100000000000000000000000001004000000000000000000
.................................................................................................AGATTTCGTCAGCAGCGGGCT.....................................................................................................21119.001901400000000000010000000000000000101000000000000000000000000002000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTTA...................................................................................................24116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................20114.00140140000000000000001102100000000000000000000000000000000001003000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGTT......................................................................................................21113.00130300000001000000000000000000100001000000000000000000000000007000000000000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................19112.00120000000000000010011001200000001100000001000000000000000000003000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGTA.......................................................................................................20110.00100500000000000000100000000000000000000000000000000000000000004000000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19110.00100090000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCC......................................................1919.0090900000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACG............................................................2419.0090000000000000000000000000200010000600000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTTC...................................................................................................2418.0080700000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................1818.0080500000000000000000000000000001100000000000000000000000000001000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTA....................................................................................................2318.0080600000000000010000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG..................................................2317.0070310000000000000100000000000000100000000000000000000000000001000000000000000000
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2017.0071030000000000000000000000000110000000000000000000000000000001000000000000000000
................................................................................................CAGATTTCGTCAGCAGCT.........................................................................................................1817.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TCTACATTGAACTCAGATTTCGTCAG..............................................................................................................2616.0060000000010000000000000000000020000300000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGTTT......................................................................................................2136.001805000000000000000000000000000000000000000000000000000000000011200000000000000000
..........................................................................................................................................TGAACAAGTTCGTTGTCGACGAAACC.......................................................2616.0060000000000000000000000000000000000600000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTGT...................................................................................................2416.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAAC........................................................2815.0050000000000000000000000000000000000500000000000000000000000000000000000000000000
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2215.0050300000000000010000000000000000000000000000000000000000000000000000001000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTC.....................................................2015.0050000000000000000000000100000000000000000000000000000000000004000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGC.......................................................................................................2015.0050300000000000000000000000000000000000000000000000000000000002000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAACC.......................................................2915.0050000000000000000000000000400000000100000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGA......................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000001000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGG......................................................................................................2114.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGA........................................................................................................1914.0040100000000000000000000000000000000000000000000000000000000003000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAAC........................................................1714.0040000000000000000000000000000000000000000000000000000000000004000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2414.0040101000000000000000000000000000000000000000000000000000000001000000000100000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGA..............................................................2213.0030000000000000000000000000000000000300000000000000000000000000000000000000000000
...............................................................................................TCAGATTTCGTCAGCAGCGGGC......................................................................................................2213.0030200000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGTG......................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
....................................................................................................................................................CGTTGTCGACGAAACCTG.....................................................1813.0030020000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCC..................................................2313.0031000000000000000000000000000110000000000000000000000000000000000000000000000000
.................................................................................................AGATTTCGTCAGCAGCGGGCTT....................................................................................................2213.0030100000000000000000000000000000000000000000000000000000000001100000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTA.....................................................2013.0030110000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................TT----------ATGAACAAGTTCGTTGTCGAC.............................................................2313.0030000000000000000000000000100000000200000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA..................................................2313.0030000000000000010001000000000000000100000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGAC.....................................................................................................2212.0020100000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGA.......................................................................................................2012.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................CATTGAACTCAGATTTCGTCAGCAGC..........................................................................................................2612.0020000000000000000000000000000000000200000000000000000000000000000000000000000000
......................................................................................................................GTGATGATT----------ATGAACAAG.........................................................................1812.0020000000000000001000000000000000100000000000000000000000000000000000000000000000
...................................................................................TCTACATTGAACTCAGATTTCGTC................................................................................................................2412.0020000000000000000000000000100000000100000000000000000000000000000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCTA..................................................2312.0020000000020000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTAA...................................................................................................2412.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGTA......................................................................................................2112.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCA.....................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................ATTTCGTCAGCAGCGGGCT.....................................................................................................1912.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................TCAGATTTCGTCAGCAGCGGGCT.....................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
..................................................................................................................................................TTCGTTGTCGACGAAACCGC.....................................................2012.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.....................................................................................................................................................GTTGTCGACGAAACCTGCT...................................................1912.0020000000000000010000000000000010000000000000000000000000000000000000000000000000
................................................................................................CAGATTTCGTCAGCAGCGGGCTG....................................................................................................2312.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
AAAAT-------------------------------------------------------------------------AGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTA--------AAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAAC-------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................2112880.00288043717986126316116
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................2212537.002537839273316007337
................................................................................................CAGGTTTCGTTAGCAACGGGCT.....................................................................................................221334.0033442934562083
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................201322.003221410809830
..................................................................................................................................................TTCGTTGTCGACGAAACCTGT....................................................211159.0015940698501
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21186.00867801340
................................................................................................CAGGTTTCGTTAGCAACGGGC......................................................................................................21182.00822300770
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA..................................................23163.00632501116110
................................................................................................CAGGTTTCGTTAGCAACGGGCC.....................................................................................................22153.00530000530
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................20149.00494701100
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................23148.0048190111521
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................19143.0043200111110
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCC...................................................22137.00371020790
..................................................................................................................................................TTCGTTGTCGACGAAACCTGA....................................................21121.00210021900
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................22117.0017402470
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................19113.00131300000
.................................................................................................AGGTTTCGTTAGCAACGGGCT.....................................................................................................21111.0011111440
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................18110.0010100090
.....................................................................................................................................................GTTGTCGACGAAACCTGC....................................................1817.007101500
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAA..................................................2217.007201400
................................................................................................CAGGTTTCGTTAGCAACGGGCTT....................................................................................................2316.006001140
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1915.005301100
....................................................................................................................................................CGTTGTCGACGAAACCTGCA...................................................2015.005500000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................2315.005100130
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCG...................................................2215.005001400
..................................................................................................................................................TTCGTTGTCGACGAAAC........................................................1713.003000300
................................................................................................CAGGTTTCGTTAGCAACGGG.......................................................................................................2013.003001200
..................................................................................................................................................TTCGTTGTCGACGAAACCTT.....................................................2012.002001100
.................................................................................................AGGTTTCGTTAGCAACGGGC......................................................................................................2012.002000110
..................................................................................................................................................TTCGTTGTCGACGAAACCTGG....................................................2112.002101000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT.................................................2412.002101000
.....................................................................................................................................................GTTGTCGACGAAACCTGCA...................................................1912.002002000
................................................................................................CAGGTTTCGTTAGCAACGGGCTC....................................................................................................2312.002000020
......................................................................................................................................................TTGTCGACGAAACCTGCA...................................................1812.002001100
..................................................................................................................................................TTCGTTGTCGACGAAACCTGAC...................................................2211.001000010
....................................................................................................................................................CGTTGTCGACGAAACCTGCAA..................................................2111.001100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCTGA.................................................2411.001000100
.................................................................................................................................................GTTCGTTGTCGACGAAACCTG.....................................................2111.001100000
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCATCT................................................2511.001000100
.................................................................................................................................................GTTCGTTGTCGACGAAACCTGCA...................................................2311.001100000
................................................................................................CAGGTTTCGTTAGCAACGGGT......................................................................................................2111.001000100
...................................................................................................................................................TCGTTGTCGACGAAACCTGCACC.................................................2311.001100000
...................................................................................................GTTTCGTTAGCAACGGGCT.....................................................................................................1911.001000010
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA..................................................2311.001001000
................................................................................................CAGGTTTCGTTAGCAACGGGCTA....................................................................................................2311.001001000
droGri2
-----------------------------------------------------------------------------------TCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAGAGTCAACG------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCA...................................................221105.001051050
..................................................................................................................................................TTCGTTGTCGACGAAACCTGC....................................................21183.0083794
..................................................................................................................................................TTCGTTGTCGACGAAACCTG.....................................................20131.0031310
...................................................................................................................................................TCGTTGTCGACGAAACCTGCA...................................................21110.0010100
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT..................................................2316.00660
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCT...................................................2214.00440
...................................................................................................................................................TCGTTGTCGACGAAACCTGC....................................................2013.00330
..................................................................................................................................................TTCGTTGTCGACGAAACCT......................................................1913.00330
...................................................................................................................................................TCGTTGTCGACGAAACCTG.....................................................1913.00330
...................................................................................................................................................TCGTTGTCGACGAAACCTGCAT..................................................2212.00220
....................................................................................................................................................CGTTGTCGACGAAACCTGC....................................................1912.00220
.................................................................................................................................................GTTCGTTGTCGACGAAACCTGCA...................................................2311.00110
..................................................................................................................................................TTCGTTGTCGACGAAACC.......................................................1811.00110
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCACT.................................................2411.00110
..................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC..................................................2311.00110

Generated: 10/20/2015 at 10:14 PM