ID:

dse_179

 Coordinate:

scaffold_5:3719057-3719117 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.1 -33.0

Flybase annnotation

Antisense to intron [Dsec\GM18007-in]; utr5 [utr5_plus_811]; utr5 [utr5_plus_810]

No Repeatable elements found

Sense Strand Reads

GAACTCGACTCGACTTGAATCTACAACTACCTCGATGGGGCATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTATTCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCCCATGCAACAGTGGTAGTGATAACATCGTTGGACCAGACA

***********************************.((((((..((((....(((((((.((((((((.(((..............))).)))))))).)))))))....))))..))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V113

male body		 V114

embryo

 V115

head

 M054

female body
..................................................ATAAGGTAGAGAAATTGATGTT......................................................................................... 22 0 1 819.00 819 649 157 6 7
..................................................ATAAGGTAGAGAAATTGATGTTGT....................................................................................... 24 0 1 764.00 764 697 61 4 2
..................................................ATAAGGTAGAGAAATTGATGTTGTC...................................................................................... 25 0 1 754.00 754 542 200 9 3
..................................................ATAAGGTAGAGAAATTGATGTTGTCT..................................................................................... 26 0 1 486.00 486 352 130 4 0
..................................................ATAAGGTAGAGAAATTGATGTTG........................................................................................ 23 0 1 393.00 393 376 10 3 4
..................................................ATAAGGTAGAGAAATTGATGT.......................................................................................... 21 0 1 28.00 28 22 4 0 2
..................................................ATAAGGTAGAGAAATTGACGTTGT....................................................................................... 24 1 1 11.00 11 11 0 0 0
...................................................TAAGGTAGAGAAATTGATGTTGTCT..................................................................................... 25 0 1 9.00 9 6 2 0 1
..................................................ATAAGGTAGAGAAATTGATG........................................................................................... 20 0 1 7.00 7 7 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTT........................................................................................ 23 1 1 6.00 6 6 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGTT...................................................................................... 25 1 1 6.00 6 5 1 0 0
..................................................ATAAGGTAGAGAAATTGAAGTTGT....................................................................................... 24 1 1 6.00 6 6 0 0 0
..................................................ATAAGGTAGAGAAATTGACGTTGTCT..................................................................................... 26 1 1 5.00 5 5 0 0 0
..................................................ATAAGGTAGAGAAATTGACGTTGTC...................................................................................... 25 1 1 5.00 5 5 0 0 0
..................................................ATAAGGGAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 5.00 5 4 1 0 0
..................................................ATAAGGTAGAGAAATTGAAGTTGTC...................................................................................... 25 1 1 5.00 5 5 0 0 0
..................................................ATAAGGTAGAGAAATTGTTGTCT........................................................................................ 23 3 1 5.00 5 5 0 0 0
..................................................ATAAGGTAGAGAAATTGACGTTG........................................................................................ 23 1 1 5.00 5 5 0 0 0
..................................................ATAAGGGAGAGAAATTGATGTT......................................................................................... 22 1 1 4.00 4 3 1 0 0
..................................................ATAAGGTAGAGAAATTGACGTT......................................................................................... 22 1 1 4.00 4 4 0 0 0
...................................................TAAGGTAGAGAAATTGATGTTGTC...................................................................................... 24 0 1 4.00 4 4 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGTCTT.................................................................................... 27 1 1 4.00 4 2 2 0 0
...................................................TAAGGTAGAGAAATTGATGTTGT....................................................................................... 23 0 1 4.00 4 3 1 0 0
..................................................ATAAGGGAGAGAAATTGATGTTGT....................................................................................... 24 1 1 3.00 3 3 0 0 0
..................................................ATAAGGTAGAGAAATTGAAGTTG........................................................................................ 23 1 1 3.00 3 3 0 0 0
..................................................ATAAGGCAGAGAAATTGATGTTGT....................................................................................... 24 1 1 3.00 3 3 0 0 0
..................................................ATAAGGCAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 3.00 3 3 0 0 0
..................................................ATAAGGCAGAGAAATTGATGTT......................................................................................... 22 1 1 3.00 3 3 0 0 0
..................................................ATAAGGTAGAGAAATTGGTGTTGTC...................................................................................... 25 1 1 3.00 3 2 1 0 0
..................................................ATAAGGTAGAGAAATTGAGGTTGT....................................................................................... 24 1 1 3.00 3 3 0 0 0
...................................................TAAGGTAGAGAAATTGATGTTG........................................................................................ 22 0 1 3.00 3 3 0 0 0
..................................................ATAAGGGAGAGAAATTGATGTTG........................................................................................ 23 1 1 3.00 3 3 0 0 0
..................................................ATAAGGCAGAGAAATTGATGTTG........................................................................................ 23 1 1 2.00 2 2 0 0 0
..................................................ATAAGGAAGAGAAATTGATGTTGT....................................................................................... 24 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGACATTGATGTTGT....................................................................................... 24 1 1 2.00 2 2 0 0 0
..................................................ATAGGGTAGAGAAATTGATGTT......................................................................................... 22 1 1 2.00 2 0 1 0 1
..................................................ATAAGGTAGAGAAATTGAAGTTGTCT..................................................................................... 26 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGAAATTGATTT.......................................................................................... 21 1 1 2.00 2 1 1 0 0
..................................................ATAAGTTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 2.00 2 1 1 0 0
..................................................ATAAGGTAGAGAAAATAATGTC......................................................................................... 22 3 2 2.00 4 4 0 0 0
..................................................ATAAGGTAGAGACATTGATGTTGTC...................................................................................... 25 1 1 2.00 2 2 0 0 0
..................................................ACAAGGTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTCGAGAAATTGATGTTGT....................................................................................... 24 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGACATTGATGTTGTCT..................................................................................... 26 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGAAATTGAGGTT......................................................................................... 22 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGGGAAATTGATGTTGTCT..................................................................................... 26 1 1 2.00 2 1 1 0 0
..................................................ATAAGTTAGAGAAATTGATGTT......................................................................................... 22 1 1 2.00 2 2 0 0 0
.................................................CATAAGGTAGAGAAATTGATGTTGT....................................................................................... 25 1 1 2.00 2 2 0 0 0
..................................................ATAAGGAAGAGAAATTGATGTT......................................................................................... 22 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAAAAATTGATGTTGT....................................................................................... 24 1 1 2.00 2 1 1 0 0
..................................................ATAAGGTAGAAAAATTGATGTTGTC...................................................................................... 25 1 1 2.00 2 1 1 0 0
..................................................ATAAAGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGAAATTGATTTTGT....................................................................................... 24 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGAAATTGAAGTT......................................................................................... 22 1 1 2.00 2 2 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGG....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTTATGTTGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGACATTGATGTTG........................................................................................ 23 1 1 1.00 1 1 0 0 0
..................................................ATAAGTTAGAGAAATTGATGTTGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATTTGT........................................................................................ 23 3 1 1.00 1 1 0 0 0
..................................................ATAAGGTCGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
...................................................TAAGTTAGAGAAATTGATGTTG........................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATCTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATATGGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATTAGGTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGATGTTTTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGTTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGTTCT.................................................................................... 27 3 1 1.00 1 0 0 1 0
................................................TCATAAGGTAGAGAAATTGATGTTGT....................................................................................... 26 2 1 1.00 1 1 0 0 0
..................................................ATCAGGTAGAGAAATTGATGTTG........................................................................................ 23 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTAATGTT......................................................................................... 22 1 1 1.00 1 0 1 0 0
..................................................ATAAGGCAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATGAGGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGATGTTAT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGCTGTCT..................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGCAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGTTGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0
...................................................TAAGGTAGAGAAATTGATGTT......................................................................................... 21 0 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGA............................................................................................. 18 0 1 1.00 1 0 1 0 0
..................................................ATCAGGTAGAGAAATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
...................................................ATAGGTAGAGAAATTGATGTTGT....................................................................................... 23 2 1 1.00 1 1 0 0 0
...................................................TAAGGCAGAGAAATTGATGTTG........................................................................................ 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGACAAATTGATGTTGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
....................................................AATGTAGAGAAATTGATGTTGTCT..................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAAGTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGGAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGGGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................GTAAGGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGTA...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTTT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTATTGTT......................................................................................... 22 2 1 1.00 1 0 1 0 0
..................................................ATATGGTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATTTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGCAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGGAATTGAGGTT......................................................................................... 22 2 1 1.00 1 1 0 0 0
..................................................ATAGGGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGAGGTTT........................................................................................ 23 2 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGAGGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGATAAATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTCATGTTGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGA....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGGTGTT......................................................................................... 22 1 1 1.00 1 0 1 0 0
..................................................ATAGGGTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGATCTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTATAGAAATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGAAGAGCAATTGATGTTGTC...................................................................................... 25 2 1 1.00 1 0 1 0 0
..................................................ATGAGGTAGAAAAATTGATGTTG........................................................................................ 23 2 1 1.00 1 1 0 0 0
..................................................ATAAGATAGAGAAATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGCAATTGATGTTG........................................................................................ 23 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGATTTTT........................................................................................ 23 2 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGCCT..................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGAAGTTT........................................................................................ 23 2 1 1.00 1 1 0 0 0
...................................................ATAGGTAGAGAAATTGATGTTGTCT..................................................................................... 25 2 1 1.00 1 0 1 0 0
..................................................ATAACGTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTTGTCTA.................................................................................... 27 0 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGACATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ACAAGGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGTGAAATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTCGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
.................................................CATAAGGTAGAGAAATTGATGTTGTC...................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAATTTGATGTT......................................................................................... 22 1 1 1.00 1 0 1 0 0
..................................................CTAAGGTAGAGAAATTGATGTTGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTCAAGTT......................................................................................... 22 2 1 1.00 1 1 0 0 0
..................................................ATAAGTTAGAGAAATTGATGTTGTCTT.................................................................................... 27 2 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGAGGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATAGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAAATTGCTGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGATGTCT..................................................................................... 26 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTACAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATATTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAATGTAGAGAAATTGATGTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAATTTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATGATGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
...................................................ATATGTAGAGAAATTGATGTTGTCT..................................................................................... 25 3 1 1.00 1 1 0 0 0
.....................................................AGGTAGAGAAATTGATGTT......................................................................................... 19 0 1 1.00 1 1 0 0 0
..................................................ATAATGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 0 1 0 0
..................................................ATAAGGTAGAGAGATTGATGTTG........................................................................................ 23 1 1 1.00 1 1 0 0 0
..................................................ATTAGGTAGAGAAATTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAGGGTAGAGAAATTGATGTTG........................................................................................ 23 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAATTGATCTTGTCT..................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAAATGATGTTGT....................................................................................... 24 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGAAACTGATGTTGTC...................................................................................... 25 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAAAAATTGATGTTG........................................................................................ 23 1 1 1.00 1 1 0 0 0
..................................................ATAAGGTAGAGCAATTGATGTT......................................................................................... 22 1 1 1.00 1 1 0 0 0
....................................................ATAGTAGAGAAATTGATGTT......................................................................................... 20 2 2 0.50 1 1 0 0 0
..................................................ATAAGGTAGAAAAATTGTTGTC......................................................................................... 22 3 2 0.50 1 0 1 0 0
..................................................CTAAGGTAGCGAAATTGATTTT......................................................................................... 22 3 3 0.33 1 0 1 0 0
...............................................GCCCTAAGGTAGCGAAATT............................................................................................... 19 3 14 0.14 2 2 0 0 0
...............................................................................................................................AACAGTGGTAATGGTAACAAC............. 21 3 10 0.10 1 0 0 0 1
..............................................GGTTATAATGTAGCGAAATT............................................................................................... 20 3 15 0.07 1 0 0 0 1
.........................................................................................TTCAGGTTCATTTCCTGTCA.................................................... 20 3 18 0.06 1 0 0 0 1
...........................................................................................................................CTGCAAGAGTGGTAGGGA.................... 18 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

CTTGAGCTGAGCTGAACTTAGATGTTGATGGAGCTACCCCGTAAGTCCGATATTCCATCTCTTTAACTACAACAGATGTGATAAGTCTGAAGTCAAAGTAACGGAAAGTTAAACAAACGGGGGTACGTTGTCACCATCACTATTGTAGCAACCTGGTCTGT

***********************************.((((((..((((....(((((((.((((((((.(((..............))).)))))))).)))))))....))))..))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V113

male body		 V115

head
...................................................................................TCTCTGAAGTCAAAGAAACGG......................................................... 21 3 6 0.17 1 1 0
...........................................................TGTTTAACAACAACAGATG................................................................................... 19 2 8 0.13 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_5:3719007-3719167 + dse_179 candidate-rescued GAACTCGA-CTCG---ACTTGAATCTACA------ACTACCTCG-----AT-----------------------GGG-GCATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA--------------TT----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC--CATGCAACAG----------------------TGGTAGTGATAA---CATC----GT---T-------GGACCAGACA
droSim2 2l:5446019-5446179 + dsi-mir-962 Known_mirbase GAACTCGA-CTCG---ACTTGAATCTACA------ACTACCTCG-----AT-----------------------GGG-GCGCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA--------------TT----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC--CCTGCAACAG----------------------TGATAGTGATAA---CATC----GT---T-------GGACCAGACA
dm3 chr2L:5641266-5641428 + dme-mir-962 Known_mirbase GAACTTGGACTCG---ACTTGAATT--CA------ACTACTTCG-----AT-----------------------GGG-GCACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTA--------------TT----CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC--CATGCAACAG----------------------TGATAGTAGTGATAAAATC----GT---T-------GGACCAGACA
droEre2 scaffold_4929:5729728-5729886 + der_24 candidate-rescued GAACTCGA-CTCG---GCTCGAATC--CC------AGTACCTCC-----TT-----------------------GGG-GCACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTA--------------TT----CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC--CACGCAACAG----------------------TGACAACGATAA---CATC----GT---T-------GGGCCACACA
droYak3 2L:13551890-13552048 - dya_92 candidate-rescued GAACTCGA-CTCG---ACTCGAATC--CA------ACCAACTTC-----AT-----------------------GGG-GCACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTA--------------TT----CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC--CACGCAACAG----------------------TGATAATGATAA---CATC----GT---T-------GGGCCACACA
droEug1 scf7180000409063:317579-317736 + AAACTCGA-CTTCAAAACCCAAACC--CA------ACTTCCTCG-----CC-----------------------GGG-GCACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGT--------------TC----TAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC--CACGCAACCG----------------------GGATACCGATAA---CG-----------T-------GGACATTACA
droBia1 scf7180000302422:3830821-3830974 + AAACTCGA-CCCA-------AAGGC--CA------ACCAACCCG-----T------------------------CGG-GCACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTA--------------TT----CAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC--CATGCATCAG----------------------TGATAATGATAA---CATC----GC---T-------GGACATAACA
droTak1 scf7180000415871:385558-385711 + AAACTCGA-CTTA-------AAACC--CA------ACCAACTCG-----AC-----------------------GGG-GCACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAA--------------TT----CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC--CACGCAACAG----------------------TGATAATGATAA---GATC----GT---T-------GGACG-TACA
droEle1 scf7180000490753:30462-30605 + AAACTCGA--------------ACC--CA------ATTACCTC-------------------------------GGG-GCACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTA--------------CT----CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC---CACGCAACAG----------------------TGATAATGATAG---CATC----GT---T-------TGGCATTACA
droRho1 scf7180000778253:33711-33863 - AAACTCGG-CTTT-------GAGTT--CA------ACTACCTCC-----AC-----------------------GGG-GCACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA---------------C----TGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC---CACGCAACAG----------------------TGATAATGATAA---CATC----GT---T-------GGACATTACA
droFic1 scf7180000453932:197418-197568 - AAACTCGG-CTCG-------GAAGC--CA------TCC--CCCC-----AC-----------------------TGG-GCAGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACA--------------TC----CAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC--CACGCAACAA-----------------------GATAGTGATTA---C-CC----GA---T-------GGACATTTCC
droKik1 scf7180000302389:430806-430972 - AAACTCGT-CTCG-------GAACT--CC-----AACA---TCCTGGAACT-----------CCCTGCC----CAAG-GCACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAA------------GCT----CGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC--CACGCAACAG----------------------TGATAATGTTAA---CATGGCCCGA-ACT-------GGAC------
droAna3 scaffold_12916:11085076-11085214 + dan_24 confident ACGCTCGA-CTTT-------GGGCC--CA------ACCACCTGG-----CC----------------------GAGG-GCACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCA--------------AA----TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC--CAAGCAACAA----------------------TGATAACAGTGA----------------------------------
droBip1 scf7180000396572:742825-742977 + ACACACGA-CTTT-------GGGCC--CA------ACCACCTGG-----TC----------------------GGGG-GCACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCA--------------AA----TAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT--CAAGCAACCA----------------------TGATAATAATAA---GCTC----ATCAGT-------GAAC------
dp5 4_group4:3182173-3182360 - dps-mir-2509 Known_mirbase GAACTCGA-CTCG-------AGTGCCACAAATGCCACA---TGATGCAAAT-----------------------GGA-GCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-------------TC----TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGCCAACAGCAACAGCTACAAAACGAGTAACGAGGAGAGATAATGATCA---TGTC----GT---TTCATTTTGGTTAGTATT
droPer2 scaffold_10:2201104-2201291 - dpe_318 candidate-rescued GAACTCGA-CTCG-------AGTGCCACAAATGCCACA---TGATGCAAAT-----------------------GGA-GCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-------------TC----TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGCCAACAGCAACAGCTACAAAACGAGTAACGAGGAGAGATAATGACCA---TGTC----GT---TTCATTTTGGTTAGTATT
droWil2 scf2_1100000004521:8625854-8626040 - dwi_150 confident AAACCTGG-CTTACA-----AAAGCTATA------ATTGCTGAA-----ATGGATACACGTTTTCTATTTAATAAGG-ACCCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTT----GTAACAAT-TGTT----AAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCC-ACATGCAACAA----------------------CA-T----ATAA---TACA----AT---C-------AAACAAAATG
droVir3 scaffold_12963:3615401-3615533 + dvi-mir-962 Known_mirbase CAACTCAA-TTTACA--CAC--ACA--CA------CACACATAA-----GA----------------------AAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTAC---TTTACATAT--------GGT----GAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA--AATGCAACGG--------------------------------------------------------------------
droMoj3 scaffold_6500:14018362-14018470 + dmo_149 candidate-rescued T-------------------------------------------------------------------------AGA-GCGCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCAT----ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA--AATGCAGCA---------------------------------------------------------------------
droGri2 scaffold_15252:3147216-3147335 + dgr_37 candidate-rescued AG-C-AGG--TTACT--TT----CA--TA------ACACACTC------------------------------AAGA-GCTCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA---------------A----AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA--AATGCAACGG--------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GAACTCGA-CTCG---ACTTGAATCTACA------ACTACCTCG-----AT-----------------------GGG-GCATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA--------------TT----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC--CATGCAACAG----------------------TGGTAGTGATAA---CATC----GT---T-------GGACCAGACASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................ATAAGGTAGAGAAATTGATGTT....................................................................................................................................................221819.0081976491576
.........................................................................................ATAAGGTAGAGAAATTGATGTTGT..................................................................................................................................................241764.007642697614
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTC.................................................................................................................................................251754.0075435422009
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCT................................................................................................................................................261486.0048603521304
.........................................................................................ATAAGGTAGAGAAATTGATGTTG...................................................................................................................................................231393.003934376103
.........................................................................................ATAAGGTAGAGAAATTGATGT.....................................................................................................................................................21128.002822240
..........................................................................................TAAGGTAGAGAAATTGATGTTGTCT................................................................................................................................................2519.0091620
.........................................................................................ATAAGGTAGAGAAATTGATG......................................................................................................................................................2017.0070700
.........................................................................................ATAAGGTAGAGAAATTGATGTTT...................................................................................................................................................2316.0060600
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTT.................................................................................................................................................2516.0060510
..........................................................................................TAAGGTAGAGAAATTGATGTTGTC.................................................................................................................................................2414.0040400
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCTT...............................................................................................................................................2714.0040220
..........................................................................................TAAGGTAGAGAAATTGATGTTGT..................................................................................................................................................2314.0040310
..........................................................................................TAAGGTAGAGAAATTGATGTTG...................................................................................................................................................2213.0030300
.........................................................................................ATAAGGTAGAGAAATTGATGTTGG..................................................................................................................................................2411.0010100
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTTCT...............................................................................................................................................2711.0010001
..........................................................................................TAAGGTAGAGAAATTGATGTT....................................................................................................................................................2111.0010010
.........................................................................................ATAAGGTAGAGAAATTGA........................................................................................................................................................1811.0010010
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTA.................................................................................................................................................2511.0010100
.........................................................................................ATAAGGTAGAGAAATTGATGTTGA..................................................................................................................................................2411.0010100
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCTA...............................................................................................................................................2711.0010100
.........................................................................................ATAAGGTAGAGAAATTGATGTC....................................................................................................................................................2211.0010100
............................................................................................AGGTAGAGAAATTGATGTT....................................................................................................................................................1911.0010100
droSim2
GAACTCGA-CTCG---ACTTGAATCTACA------ACTACCTCG-----AT-----------------------GGG-GCGCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTA--------------TT----CAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC--CCTGCAACAG----------------------TGATAGTGATAA---CATC----GT---T-------GGACCAGACASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................ATAAGGTAGAGAAATTGATGTTGT..................................................................................................................................................2415415.00541504003202837001340265145000
.........................................................................................ATAAGGTAGAGAAATTGATGTT....................................................................................................................................................2214495.004495122039713672101683154076000
.........................................................................................ATAAGGTAGAGAAATTGATGTTG...................................................................................................................................................2313519.0035190201641101300570153356000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTC.................................................................................................................................................2512980.00298002431956512239001226142444000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCT................................................................................................................................................261663.0066305221101637109515452000
.........................................................................................ATAAGGTAGAGAAATTGATGT.....................................................................................................................................................211241.00241020047333001701165000
.........................................................................................ATAAGGTAGAGAAATTGATG......................................................................................................................................................201190.00190030011410000100062000
.........................................................................................ATAAGGTAGAGAAATTGATGTTT...................................................................................................................................................231168.001680000001100200164000
.........................................................................................ATAAGGTAGAGAAATTGA........................................................................................................................................................18199.0099000095000002002000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTT.................................................................................................................................................25191.0091010000000000090000
.........................................................................................ATAAGGTAGAGAAATTGATGTTA...................................................................................................................................................23188.0088000000000000088000
.........................................................................................ATAAGGTAGAGAAATTGAT.......................................................................................................................................................19182.0082000074200001005000
................................................................................................................................................ACTTCAGTTTCATTGCCTTTCA.............................................................................................22161.00610100380100000021000
.........................................................................................ATAAGGTAGAGAAATT..........................................................................................................................................................16138.0038000000000038000000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCA................................................................................................................................................26130.0030000000000010029000
................................................................................................................................................ACTTCAGTTTCATTGCCTTTC..............................................................................................21119.0019000018000000001000
.................................................................................................................................................CTTCAGTTTCATTGCCTTTCA.............................................................................................21118.0018030040010000010000
................................................................................................................................................ACTTCAGTTTCATTGCCT.................................................................................................18117.0017000016100000000000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTA.................................................................................................................................................25117.0017000000000000017000
..........................................................................................TAAGGTAGAGAAATTGATGTTGTCT................................................................................................................................................25115.0015020000000020011000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGA..................................................................................................................................................24114.0014000000000000014000
.................................................................................................................................................CTTCAGTTTCATTGCCTTTCAA............................................................................................22112.001201005001000005000
..........................................................................................TAAGGTAGAGAAATTGATGTTG...................................................................................................................................................22110.001000000000001009000
................................................................................................................................................ACTTCAGTTTCATTGCCTTTCAA............................................................................................23110.001000000001000009000
.........................................................................................ATAAGGTAGAGAAATTGATGTA....................................................................................................................................................22110.0010000000000000010000
..........................................................................................TAAGGTAGAGAAATTGATGTTGTC.................................................................................................................................................2419.00900000010000008000
..........................................................................................TAAGGTAGAGAAATTGATGTTGT..................................................................................................................................................2319.00900000001001007000
.........................................................................................ATAAGGTAGAGAAAT...........................................................................................................................................................1518.00800000000008000000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCC................................................................................................................................................2617.00705100000000001000
.........................................................................................ATAAGGTAGAGAAATTGATGTTAA..................................................................................................................................................2416.00600000000000006000
.........................................................................................ATAAGGTAGAGAAATTGATGTG....................................................................................................................................................2216.00600000000001005000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGC..................................................................................................................................................2415.00502000000001002000
.................................................................................................................................................CTTCAGTTTCATTGCCTT................................................................................................1815.00500005000000000000
................................................................................................................................................ACTTCAGTTTCATTGCCTT................................................................................................1915.00500005000000000000
................................................................................................................................................ACTTCAGTTTCATTGCCTTT...............................................................................................2015.00500003000000002000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCTT...............................................................................................................................................2714.00401000000000003000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCTA...............................................................................................................................................2714.00400001000000003000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGG..................................................................................................................................................2414.00401000000000003000
..........................................................................................TAAGGTAGAGAAATTGATGTT....................................................................................................................................................2113.00300000000000003000
.........................................................................................ATAAGGTAGAGAAATTG.........................................................................................................................................................1713.00300000000002001000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCTAA..............................................................................................................................................2813.00300000000000003000
.........................................................................................ATAAGGTAGAGAAATTGATGTTC...................................................................................................................................................2313.00300000000001002000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTG.................................................................................................................................................2513.00300000000000003000
.........................................................................................ATAAGGTAGAGAAATTGAAA......................................................................................................................................................2013.00300000000000003000
.................................................................................................................................................CTTCAGTTTCATTGCCTTTC..............................................................................................2013.00300001000000002000
...........................................................................................AAGGTAGAGAAATTGATG......................................................................................................................................................1812.00200002000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTAA................................................................................................................................................2612.00200000000000002000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCG................................................................................................................................................2612.00202000000000000000
............................................................................................AGGTAGAGAAATTGATGTT....................................................................................................................................................1912.00200000000000002000
.........................................................................................ATAAGGTAGAGAAATTGATA......................................................................................................................................................2012.00200000000000002000
.........................................................................................ATAAGGTAGAGAAATTGATT......................................................................................................................................................2012.00200000000000002000
............................................................................................AGGTAGAGAAATTGATGTTGT..................................................................................................................................................2112.00200000000000002000
..........................................................................................TAAGGTAGAGAAATTGATGTTGTA.................................................................................................................................................2412.00200000000000002000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGAAA................................................................................................................................................2611.00100000000000001000
...........................................................................................AAGGTAGAGAAATTGATGTTG...................................................................................................................................................2111.00100001000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGTCTTT..............................................................................................................................................2811.00100000000000001000
................................................................................................AGAGAAATTGATGTTGTCT................................................................................................................................................1911.00100000000001000000
..........................................................................................TAAGGTAGAGAAATTGATG......................................................................................................................................................1911.00100001000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGTTAG..................................................................................................................................................2411.00100000000000001000
................................................................................................AGAGAAATTGATGTTG...................................................................................................................................................1611.00100000000001000000
.................................................................................................................................................CTTCAGTTTCATTGCCTTTCAAA...........................................................................................2311.00100000000000001000
...........................................................................................AAGGTAGAGAAATTGATGTTGTCAT...............................................................................................................................................2511.00100000000000001000
.........................................................................................ATAAGGTAGAGAAATTGATGTTGGAC................................................................................................................................................2611.00100000000000001000
................................................................................................AGAGAAATTGATGTTGT..................................................................................................................................................1711.00100000000001000000
.........................................................................................ATAAGGTAGAGAAATTGATGTGT...................................................................................................................................................2311.00100000000001000000
................................................................................................AGAGAAATTGATGTTGTC.................................................................................................................................................1811.00100000000001000000
..........................................................................GGG-GCGCTCAGGCTATAAGGTA..................................................................................................................................................................2211.00100001000000000000
..........................................................................................TAAGGTAGAGAAATTGATGTTGTCC................................................................................................................................................2511.00101000000000000000
........................................................................................................................................T----CAGACTTCAGTTTCATTGCCT.................................................................................................2211.00100100000000000000
...............................................................................................TAGAGAAATTGATGTTGTC.................................................................................................................................................1911.00100000000001000000
..................................................................................................................................................TTCAGTTTCATTGCCTTTCA.............................................................................................2011.00100000000000001000
...........................................................................................AAGGTAGAGAAATTGATGTTGTC.................................................................................................................................................2311.00100000000000001000
............................................................................................AGGTAGAGAAATTGATGTTGTC.................................................................................................................................................2211.00100000000001000000
.................................................................................................................................................CTTCAGTTTCATTGCCTTT...............................................................................................1911.00100001000000000000
...............................................................................................TAGAGAAATTGATGTT....................................................................................................................................................1611.00100000000001000000
.................................................................................................GAGAAATTGATGTTGTC.................................................................................................................................................1711.00100000000001000000
.................................................................................................................................................CTTCAGTTTCATTGCCTTTCT.............................................................................................2111.00100000000000001000
...............................................................................................TAGAGAAATTGATGTTGTCT................................................................................................................................................2011.00100000000001000000
............................................................................................AGGTAGAGAAATTGATGTTGTCATA..............................................................................................................................................2511.00100000000000001000
...............................................................................................TAGAGAAATTGATGTTGT..................................................................................................................................................1811.00100000000001000000
.........................................................................................ATAAGGTAGAGAAATTGAA.......................................................................................................................................................1911.00100000000000001000
........................................................................................TATAAGGTAGAGAAATTGATGT.....................................................................................................................................................2211.00100000000001000000
...................................................................................................GAAATTGATGTTGTC.................................................................................................................................................1520.50100000000001000000
.........................................................................................ATAAGGTAGAGAAATA..........................................................................................................................................................1660.17100000000001000000
dm3
GAACTTGGACTCG---ACTTGAATT--CA------ACTACTTCG-----AT-----------------------GGG-GCACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTA--------------TT----CAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC--CATGCAACAG----------------------TGATAGTAGTGATAAAATC----GT---T-------GGACCAGACASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTC.................................................................................................................................................25141535.00415350000050001120100000002223000000000000431703330496035158362044279419335115852500000000000000000000000122113033000009001380223004291008052245002700000010000000232100005170044752063902033121057747347500000014032015020210113410027164040140039087659479734802711230056830001531009591004994357960158752611624668122546640831901300000960400160901070000012003001001100100155115816732017723804001337535481132756402810537133563701788010450015150524371212103613044919953116192249348647171550
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCT................................................................................................................................................26113984.001398400000000000400000000213000000000000155510131320930200121041722816331600000000000000000000000010000000000001002100000030000000001200000000000000000000000200000010018561133268105211116130000000000010000003200110000000068817194223260015711024250100011370300000120821664122806398307114332058420000000110100120470015000000001010000000100143858107969112380000000107423122601218613711215836322883430215641157005010021007121543826505215103400
.........................................................................................ATAAGGTAGAGAAATTGATGCTG...................................................................................................................................................23112620.001262000000200000400000000301240000000000012491071432871141289410251527228000000000000000000000001001000000000030012003000042000000060000011000000000000000010000011002770832962196271816160000040040410020004600004600013511393212477283200339013284900000923045100177515032172544819112231114150000000000010000027008000000000010000000200594251134790422020002934314239221122191158161179320528200438392004000000101262375643682666113130
.........................................................................................ATAAGGTAGAGAAATTGATGCTGT..................................................................................................................................................2417426.0074260000000000010100000005000000000000002527611124651351073924521161300000000000000000000000010100050000003009013130027210020121360029010000000000000000011000010001024632260531113400000005020000000001001107030400382216222750054139180000012274110001001092271183252978284491356530000000001000000012008000000000000000000000774751347247952500000110121788211191429175642197769490034391151000000100014249222128333206100
.........................................................................................ATAAGGTAGAGAAATTGATGCT....................................................................................................................................................2212870.0028700000000000000000000011029000000000003141425429430210610127200000000000000000000000001000000000000002002000000001010030000000000000000000000000000000004121591622357700000000000000000001000011000434599368718005202881300000290211004203171313851037144208232800000000000000000100100000000000000000000020922852117000003010136410033862214582171600113031202000000011606119616152301000
.........................................................................................ATAAGGTAGAGAAATTGATG......................................................................................................................................................2011202.001202000000000000000000000007400000000000201022012100121417200000000000000000000000000000000000000000200100000000000001000000000000000000000000000000000132243200000000000010000000001000000000020060117323005001461300000124000000001424030121281017000000000000000001003000000000000000000000217100821000000210014220212171615936760003160020000000091232201400010
.........................................................................................ATAAGGTAGAGAAATTGATGC.....................................................................................................................................................2111111.001111000000000001000000000004100000000000150112114010811090100000000000000000000000000000000000001002001000100000000000000000000000000000001000000000002693525201000000200000010000000000000000110394135300026010190000000000000000164015950625705700000000000000000500100001000000000000000083404010000000000000134610015771716150005812000000000001202884961412000
................................................................................................................................................ACTTCAGTTTCATTACCTTTCA.............................................................................................221745.00745000001000006000000000009700000000000021000110002011110000200000000000000000002222030000000062036103000200200001122110010000000000000000000000000000000430280000000000000000101002401000000000028158000014020000000000000000001300281844573315693400000000000000000000100000000000000000000063500070200000010000100000000150200000000000000000000000100000
..........................................................................................TAAGGTAGAGAAATTGATGCTGTCT................................................................................................................................................251608.0060800000000000000000000000000000000000010001011113020030000000000000000000000000000000000000010030000000000000000200000000000000000000000000000000010802200300000000030000000000100000000050037151000060270000000600000000045142031117300000000000000000200000000000000000000000013421101318000000000016003171412121940001730000000000020832571600000
.........................................................................................ATAAGGTAGAGAAATTGAT.......................................................................................................................................................191326.00326000000000000000000000004200000000000000001000001000010000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000141077000026077000000000000000000100002401010000000000000000010000000000000000000000000212000000000100000150000001353600010000000000002020000100000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTT.................................................................................................................................................251250.0025000000000000000000000000000000000000000000111000002240000000000000000000000000000000000000000102000000001000000010000000000000000000000000000000000102240001000000000000000000110000000000001509000030500000001000000000111321042010000000000000000000002000000000000000000000240000000000000000021010002710591700072000000000000001100100000
.........................................................................................ATAAGGTAGAGAAATTGA........................................................................................................................................................181217.0021700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010211000000000000000000000000000001300010027048100070462200000100200002001030001000000000000100000000000000000000000000000000000000000000000010003000000046217000400000000000020160000400000
.................................................................................................................................................CTTCAGTTTCATTACCTTTCAA............................................................................................221200.002000000010000000000000000067000000000000000000000000000000000000000000000000000000000000000000000501800000000000006000200000000000000000000000000000001003000000000000000000010320000000000003302800003011000000000000000001000324105083000000000000000000000000000000000000000000160000000000000000010000002030000020000000000000010000000000
.................................................................................................................................................CTTCAGTTTCATTACCTTTCA.............................................................................................211182.001820000000000000000000000062000000000000010000000001000000000000000000000000000000000000000000000101200000000000000000300000000000000000000000000000000001000000000000000100100000001000000000912710001301800000000000000000020022162044000000000000000000001000000000000000000000070010010000010000000000000111000001000000000000000000000000
..........................................................................................TAAGGTAGAGAAATTGATGCTGTC.................................................................................................................................................241148.001480000000000000000000000000000000000010000010010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001010120000000000001000000000010000000006004070200306000000000000002000000000000210000000000000000000000000000000000000000001603020000000000000100000142583200030000000000000023112900000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTA.................................................................................................................................................251142.001420000000000030000000000000000000000000000009011003150000000000000000000000000000000000000000002000000000000000010000000000000000000000000000000000010110100000000000000000000110000000000006070000101000000000000000003000000100000000000000000000010000000000000000000000002001020000000100000100010012671400020000000000001020101000000
..........................................................................................TAAGGTAGAGAAATTGATGCTG...................................................................................................................................................221139.0013900000000000000000000000100000000000010100010010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000060000000000000000000020050900006015000000000000004812300000100000000000000000000010000000000000000000000000401150300000000000000102121353200010000000000000000022300000
................................................................................................................................................ACTTCAGTTTCATTACCTTTCAA............................................................................................231123.001230000000000010000000000090000000000000000000000000000000000000000000000000000000000000000001007104000101000000040000000000000000000000000000000000000000300000000000000000001200000000000003010000030800000000000000000000010447110165000000000000000000000000000000000000000000050000000000000000000000000010000000000000000000000000100000
................................................................................................................................................ACTTCAGTTTCATTACCTTTC..............................................................................................21191.009100000000000000000000000170000000000000000000000000000000010000000000000000000100000000000000003000000001000000010002000000000000000000000000000000000100100000000000000000000000010000000005070000400000000000000000000100235250571000000000000000000000000000000000000000001100001000000000000000000000120000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTG.................................................................................................................................................25170.00700000000000000000000000000000000000000010015000105000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000020010000000000000000000000010000000002000100000000000000000000000101001100000000000000000000010010000000000000000000001010001000000000000100100001246600000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCA................................................................................................................................................26164.00640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000011001000000000000000000000100000000000001020000005000000000000000001000122211200000000000000000000000000000000000000001000500000100000000000100000010252000010000000000001000000000000
..........................................................................................TAAGGTAGAGAAATTGATGCTGT..................................................................................................................................................23159.00590000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000030000102000000000000000001101001000000000000000000000000000000000000000000000000310000000000000000000000000360000020000000100000000000200000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCTT...............................................................................................................................................27144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000006050000005000000000000000000000100111200000000000000000010000000000000000000000000400000000000000000200000000111000000000000000001000000000000
...............................................................................................TAGAGAAATTGATGCTGTC.................................................................................................................................................19142.004200000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000201000000000000000002711100000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTT...................................................................................................................................................23142.00420000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000002080500001000000000000000000100000100000000000000000000010000000000000000000000000300010000000000000100000000101000010000000000000020001000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCC................................................................................................................................................26140.00400000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000004050000000000000000000000001101111000020000000000000000000000000000000000000000000200000000000000000100000101113000000000000000000000100000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCG................................................................................................................................................26130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000100000000000000000000000000000010000000000000000000001200000000000000000000100101161100000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGC..................................................................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001020000002000000000000000000001000000000000000000000000000010000000000000000000000100000000000000000000000000060000020000000000000000000000000
.........................................TCG-----AT-----------------------GGG-GCACTCAGGCT..........................................................................................................................................................................19125.0025000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000002000000000000000000000000000000000000002000020000000000000000000220000320001000000000000000000000000000000000000000000000000000000000000000000000030000110000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGG..................................................................................................................................................24125.00250000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000161000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTC...................................................................................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000005000000200000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000001000070000010000000000000001000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGA..................................................................................................................................................24119.0019000000000000000000000000000000000000000000000010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000100000000000000000010000020000000000000000000000000000000000000000000000010001000000000000001000000050000000000000000000010000000000
..........................................................................................TAAGGTAGAGAAATTGATGCT....................................................................................................................................................21117.0017000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000000000000000000200001000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000060000000000000000000000020000000
.........................................................................................ATAAGGTAGAGAAATTGATGCATC..................................................................................................................................................24116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000079000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCTATC.............................................................................................................................................29115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AGAGAAATTGATGCTGTC.................................................................................................................................................18114.0014000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000510000020000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................ACTTCAGTTTCATTACCTTT...............................................................................................20113.0013000000000000000000000003000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010302000000000010000000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCTA...............................................................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000200000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000020000000000000000000010000000000
..........................................................................................TAAGGTAGAGAAATTGATG......................................................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGTCTC...............................................................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000200000000000000000010000000000000011000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTGGT.................................................................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070300000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATGCTA...................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000101000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000011000010000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGATT......................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
...............................................................................................TAGAGAAATTGATGCTGTCT................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000300000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................AAGGTAGAGAAATTGATGCTGTC.................................................................................................................................................2319.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000020000000000000000000000000000100000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000
droEre2
GAACTCGA-CTCG---GCTCGAATC--CC------AGTACCTCC-----TT-----------------------GGG-GCACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTA--------------TT----CGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC--CACGCAACAG----------------------TGACAACGATAA---CATC----GT---T-------GGGCCACACASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................ATAAGGTAGAAAAATTGTTGTC....................................................................................................................................................2217500.007500221135367007290
.........................................................................................ATAAGGTAGAAAAATTGTTGT.....................................................................................................................................................211605.006053110549510
.........................................................................................ATAAGGTAGAAAAATTGTTGTCT...................................................................................................................................................231300.003007040258310
.........................................................................................ATAAGGTAGAAAAATTGTTG......................................................................................................................................................20182.008210107190
..........................................................................................TAAGGTAGAAAAATTGTTGTCT...................................................................................................................................................22168.006810006520
.........................................................................................ATAAGGTAGAAAAATTGTTGTCA...................................................................................................................................................23119.001900001810
..........................................................................................TAAGGTAGAAAAATTGTTGTC....................................................................................................................................................2117.0071000510
...........................................................................................AAGGTAGAAAAATTGTTGTC....................................................................................................................................................2016.0060000600
.........................................................................................ATAAGGTAGAAAAATTGTC.......................................................................................................................................................1916.0060000600
.........................................................................................ATAAGGTAGAAAAATTGTTGTT....................................................................................................................................................2214.0040000400
.........................................................................................ATAAGGTAGAAAAATTGTTGTA....................................................................................................................................................2213.0030000120
.........................................................................................ATAAGGTAGAAAAATTGTTGTCC...................................................................................................................................................2313.0030000300
..........................................................................................TAAGGTAGAAAAATTGTTGTCTT..................................................................................................................................................2311.0010000010
.................................................................................................................................................CTGCAGTTTAACTATCTTTCA.............................................................................................2111.0010000100
.........................................................................................ATAAGGTAGAAAAATTGTTGC.....................................................................................................................................................2111.0010000100
..........................................................................................TAAGGTAGAAAAATTGTTGT.....................................................................................................................................................2011.0010000100
.........................................................................................ATAAGGTAGAAAAATTGTTGTCTC..................................................................................................................................................2411.0010000100
.........................................................................................ATAAGGTAGAAAAATTGTTGTGA...................................................................................................................................................2311.0010000100
..........................................................................................TAAGGTAGAAAAATTGTTGTCTTC.................................................................................................................................................2411.0010000100
.........................................................................................ATAAGGTAGAAAAATTGTTT......................................................................................................................................................2011.0010000100
..........................................................................................TAAGGTAGAAAAATTGTTGTCA...................................................................................................................................................2211.0011000000
droYak3
GAACTCGA-CTCG---ACTCGAATC--CA------ACCAACTTC-----AT-----------------------GGG-GCACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTA--------------TT----CAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC--CACGCAACAG----------------------TGATAATGATAA---CATC----GT---T-------GGGCCACACASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................ATAAGGTAGAGAAATTGTTGTC....................................................................................................................................................2211280.001280305123111611580000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCT...................................................................................................................................................231633.00633131440026000000
.........................................................................................ATAAGGTAGAGAAATTGTTGT.....................................................................................................................................................211129.0012911810021070000
..........................................................................................TAAGGTAGAGAAATTGTTGTCT...................................................................................................................................................22145.0045020000430000
.........................................................................................ATAAGGTAGAGAAATTGTTG......................................................................................................................................................20123.0023020001200000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCC...................................................................................................................................................2315.00520100020000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCA...................................................................................................................................................2314.00401000030000
..........................................................................................TAAGGTAGAGAAATTGTTGTC....................................................................................................................................................2112.00202000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTT..................................................................................................................................................2411.00100000010000
..........................................................................................TAAGGTAGAGAAATTGTTGTCTA..................................................................................................................................................2311.00100000010000
.........................................................................................ATAAGGTAGAGAAATTGT........................................................................................................................................................1811.00100001000000
........................................................................................TATAAGGTAGAGAAATTGTTGTCT...................................................................................................................................................2411.00100000010000
...........................................................................................AAGGTAGAGAAATTGTTGTC....................................................................................................................................................2011.00100100000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTT....................................................................................................................................................2211.00100100000000
............................................................................................AGGTAGAGAAATTGTTGTC....................................................................................................................................................1911.00100000010000
.................................................................................................................................................CATCAGTTTAACTATCTTTCA.............................................................................................2111.00101000000000
...........................................................................................AAGGTAGAGAAATTGTTGTCT...................................................................................................................................................2111.00100000010000
.........................................................................................ATAAGGTAGAGAAATTGTT.......................................................................................................................................................1911.00100000010000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCG...................................................................................................................................................2311.00110000000000
droEug1
AAACTCGA-CTTCAAAACCCAAACC--CA------ACTTCCTCG-----CC-----------------------GGG-GCACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGT--------------TC----TAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC--CACGCAACCG----------------------GGATACCGATAA---CG-----------T-------GGACATTACASizeHit CountTotal NormTotal
No Reads
droBia1
AAACTCGA-CCCA-------AAGGC--CA------ACCAACCCG-----T------------------------CGG-GCACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTA--------------TT----CAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC--CATGCATCAG----------------------TGATAATGATAA---CATC----GC---T-------GGACATAACASizeHit CountTotal NormTotal
No Reads
droTak1
AAACTCGA-CTTA-------AAACC--CA------ACCAACTCG-----AC-----------------------GGG-GCACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAA--------------TT----CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC--CACGCAACAG----------------------TGATAATGATAA---GATC----GT---T-------GGACG-TACASizeHit CountTotal NormTotal
No Reads
droEle1
AAACTCGA--------------ACC--CA------ATTACCTC-------------------------------GGG-GCACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTA--------------CT----CAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC---CACGCAACAG----------------------TGATAATGATAG---CATC----GT---T-------TGGCATTACASizeHit CountTotal NormTotal
No Reads
droRho1
AAACTCGG-CTTT-------GAGTT--CA------ACTACCTCC-----AC-----------------------GGG-GCACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA---------------C----TGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC---CACGCAACAG----------------------TGATAATGATAA---CATC----GT---T-------GGACATTACASizeHit CountTotal NormTotal
No Reads
droFic1
AAACTCGG-CTCG-------GAAGC--CA------TCC--CCCC-----AC-----------------------TGG-GCAGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACA--------------TC----CAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC--CACGCAACAA-----------------------GATAGTGATTA---C-CC----GA---T-------GGACATTTCCSizeHit CountTotal NormTotal
No Reads
droKik1
AAACTCGT-CTCG-------GAACT--CC-----AACA---TCCTGGAACT-----------CCCTGCC----CAAG-GCACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAA------------GCT----CGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC--CACGCAACAG----------------------TGATAATGTTAA---CATGGCCCGA-ACT-------GGAC------SizeHit CountTotal NormTotal
No Reads
droAna3
ACGCTCGA-CTTT-------GGGCC--CA------ACCACCTGG-----CC----------------------GAGG-GCACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCA--------------AA----TAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC--CAAGCAACAA----------------------TGATAACAGTGA----------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................ATAAGGTAGAGAAAATAATGTCT...................................................................................................................................................2311274.001274800261118122
.........................................................................................ATAAGGTAGAGAAAATAATGTC....................................................................................................................................................2211238.001238261057111044
.........................................................................................ATAAGGTAGAGAAAATAATGT.....................................................................................................................................................211170.0017040081526
.........................................................................................ATAAGGTAGAGAAAATAATG......................................................................................................................................................20179.00794003684
.................................................................................................................................................CATCAATTTCCCTAGCTTGCAT............................................................................................22111.0011000083
.........................................................................................ATAAGGTAGAGAAAATAAT.......................................................................................................................................................1916.006000042
..........................................................................................TAAGGTAGAGAAAATAATGTC....................................................................................................................................................2114.004400000
.........................................................................................ATAAGGTAGAGAAAATAATGTCC...................................................................................................................................................2313.003010020
.........................................................................................ATAAGGTAGAGAAAATAATGTCA...................................................................................................................................................2313.003000111
.........................................................................................ATAAGGTAGAGAAAATAATGTT....................................................................................................................................................2213.003000030
........................................................................................TATAAGGTAGAGAAAATAATGT.....................................................................................................................................................2212.002000020
..........................................................................................TAAGGTAGAGAAAATAATGTCT...................................................................................................................................................2212.002100010
.........................................................................................ATAAGGTAGAGAAAATAATGTCTTTT................................................................................................................................................2612.002100010
.........................................................................................ATAAGGTAGAGAAAATAATGA.....................................................................................................................................................2112.002000020
.........................................................................................ATAAGGTAGAGAAAATAATGTCTT..................................................................................................................................................2411.001000010
.........................................................................................ATAAGGTAGAGAAAATAATGTAA...................................................................................................................................................2311.001000010
.................................................................................................................................................CATCAATTTCCCTAGCTTGCATT...........................................................................................2311.001000100
.........................................................................................ATAAGGTAGAGAAAATAATGTCTTT.................................................................................................................................................2511.001000010
.................................................................................................................................................CATCAATTTCCCTAGCTTGCA.............................................................................................2111.001000010
..................................................................................................................................................ATCAATTTCCCTAGCTTGCAT............................................................................................2111.001000010
................................................................................................................................................ACATCAATTTCCCTAGCTTGCAT............................................................................................2311.001000010
.........................................................................................ATAAGGTAGAGAAAATAATGG.....................................................................................................................................................2111.001000010
................................................................................................................................................ACATCAATTTCCCTAGCTTGCA.............................................................................................2211.001100000
.........................................................................................ATAAGGTAGAGAAAATA.........................................................................................................................................................1711.001000100
.........................................................................................ATAAGGTAGAGAAAATAATGC.....................................................................................................................................................2111.001000010
...........................................................................................AAGGTAGAGAAAATAATGTC....................................................................................................................................................2011.001000010
..........................................................................................TAAGGTAGAGAAAATAATGT.....................................................................................................................................................2011.001100000
.................................................................................................................................................CATCAATTTCCCTAGCTTGC..............................................................................................2011.001000100
droBip1
ACACACGA-CTTT-------GGGCC--CA------ACCACCTGG-----TC----------------------GGGG-GCACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCA--------------AA----TAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT--CAAGCAACCA----------------------TGATAATAATAA---GCTC----ATCAGT-------GAAC------SizeHit CountTotal NormTotal
No Reads
dp5
GAACTCGA-CTCG-------AGTGCCACAAATGCCACA---TGATGCAAAT-----------------------GGA-GCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-------------TC----TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGCCAACAGCAACAGCTACAAAACGAGTAACGAGGAGAGATAATGATCA---TGTC----GT---TTCATTTTGGTTAGTATTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................TTTAAGGTACAGACTTTG---------AGTC............................................................................................................................................221720.00720861100820104860
........................................................................................TTTAAGGTACAGACTTTG---------AG..............................................................................................................................................201381.003814300022603460
........................................................................................TTTAAGGTACAGACTTTG---------AGT.............................................................................................................................................211292.002921010001102781
........................................................................................TTTAAGGTACAGACTTTG---------AGTCT...........................................................................................................................................231125.00125158000280920
..................................................................................................................................................ATCAATTTTCGTATCTTTTAAT...........................................................................................22125.002500000000250
........................................................................................TTTAAGGTACAGACTTTG---------A...............................................................................................................................................19123.002301000100210
........................................................................................TTTAAGGTACAGACTTTG---------AGTT............................................................................................................................................22115.001501000040100
..................................................................................................................................................ATCAATTTTCGTATCTTTTAA............................................................................................21113.001303000000100
.................................................................................................................................................CATCAATTTTCGTATCTTTTAAT...........................................................................................2319.0090001000080
........................................................................................TTTAAGGTACAGACTTTG---------AGTCA...........................................................................................................................................2317.0070000000070
.....................................................................................TGTTTTAAGGTACAGACTTTG---------A...............................................................................................................................................2216.0060000000060
.........................................................................................TTAAGGTACAGACTTTG---------AGTC............................................................................................................................................2115.0050000003020
........................................................................................TTTAAGGTACAGACTTTG---------AGA.............................................................................................................................................2114.0040000001030
.....................................................................................TGTTTTAAGGTACAGACTTTG---------................................................................................................................................................2112.0020000000020
.........................................................................................TTAAGGTACAGACTTTG---------AG..............................................................................................................................................1912.0020000000020
........................................................................................TTTAAGGTACAGACTTTG---------AA..............................................................................................................................................2012.0020000000020
........................................................................................TTTAAGGTACAGACTTTG---------AGTA............................................................................................................................................2212.0020000000020
...........................................................................................AAGGTACAGACTTTG---------AGTCA...........................................................................................................................................2012.0020000000020
...........................................................................................AAGGTACAGACTTTG---------AGTC............................................................................................................................................1912.0020000000020
........................................................................................TTTAAGGTACAGACTTTG---------AGTCCTA-------------............................................................................................................................2511.0010000000010
........................................................................................TTTAAGGTACAGACTTTA---------................................................................................................................................................1811.0010000000010
.........................................................................................TTAAGGTACAGACTTTG---------AGT.............................................................................................................................................2011.0010000000010
........................................................................................TTTAAGGTACAGACTTTG---------................................................................................................................................................1811.0010000000010
........................................................................................TTTAAGGTACAGACTTTG---------AGTCC...........................................................................................................................................2311.0010000000010
........................................................................................TTTAAGGTACAGACTTTG---------AGTCTA..........................................................................................................................................2411.0010000000010
........................................................................................TTTAAGGTACAGACTTTG---------AGTCTAT-------------TC----......................................................................................................................2711.0010000000010
..................................................................................................................................................ATCAATTTTCGTATCTTTTA.............................................................................................2011.0010000000010
.........................................................................................TTAAGGTACAGACTTTG---------AGTCT...........................................................................................................................................2211.0010100000000
............................................................................A-GCAGTCGTGTTTTAAGGTAC.................................................................................................................................................................2111.0011000000000
.................................................................................................................................................CATCAATTTTCGTATCTTTTAA............................................................................................2211.0010000000010
droPer2
GAACTCGA-CTCG-------AGTGCCACAAATGCCACA---TGATGCAAAT-----------------------GGA-GCAGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTAT-------------TC----TAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGCCAACAGCAACAGCTACAAAACGAGTAACGAGGAGAGATAATGACCA---TGTC----GT---TTCATTTTGGTTAGTATTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................................TTTAAGGTACAGACTTTG---------AGTC............................................................................................................................................221234.0023401010232
........................................................................................TTTAAGGTACAGACTTTG---------AGTCT...........................................................................................................................................23137.00370000037
........................................................................................TTTAAGGTACAGACTTTG---------AG..............................................................................................................................................20132.00320000032
........................................................................................TTTAAGGTACAGACTTTG---------AGT.............................................................................................................................................21115.00150100014
........................................................................................TTTAAGGTACAGACTTTG---------A...............................................................................................................................................1915.005000005
........................................................................................TTTAAGGTACAGACTTTG---------AGTT............................................................................................................................................2215.005000005
........................................................................................TTTAAGGTACAGACTTTG---------AGTA............................................................................................................................................2211.001000001
........................................................................................TTTAAGGTACAGACTTTG---------AGTCA...........................................................................................................................................2311.001000001
droWil2
AAACCTGG-CTTACA-----AAAGCTATA------ATTGCTGAA-----ATGGATACACGTTTTCTATTTAATAAGG-ACCCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTT----GTAACAAT-TGTT----AAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCC-ACATGCAACAA----------------------CA-T----ATAA---TACA----AT---C-------AAACAAAATGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................ATAAGGTAGAGAAAATGTTGTCT...................................................................................................................................................2311876.001876261117621463
.........................................................................................ATAAGGTAGAGAAAATGTTGTC....................................................................................................................................................2211235.00123512411791327
.........................................................................................ATAAGGTAGAGAAAATGTTGTCC...................................................................................................................................................23153.0053714302
..........................................................................................TAAGGTAGAGAAAATGTTGTCT...................................................................................................................................................22132.0032012812
.........................................................................................ATAAGGTAGAGAAAATGTTGT.....................................................................................................................................................21626.671600115603
.........................................................................................ATAAGGTAGAGAAAATGTTGTCA...................................................................................................................................................23123.0023012200
.......................................................................................................................................TT----AAGACATCACTTTCACTAGC..................................................................................................22111.001112413
.........................................................................................ATAAGGTAGAGAAAATGTTG......................................................................................................................................................2066.5039003900
.........................................................................................ATAAGGTAGAGAAAATGTTGTCTT..................................................................................................................................................2415.00500500
.......................................................................................................................................TT----AAGACATCACTTTCACTAG...................................................................................................2115.00511300
.........................................................................................ATAAGGTAGAGAAAATGTTGTCTA..................................................................................................................................................2414.00400301
.........................................................................................ATAAGGTAGAGAAAATGTTGTCTC..................................................................................................................................................2413.00300201
........................................................................................TATAAGGTAGAGAAAATGTTGTCT...................................................................................................................................................2413.00300201
.................................................................................................................................................CATCACTTTCACTAGCTTTCA.............................................................................................2113.00300201
........................................................................................TATAAGGTAGAGAAAATGTTGTC....................................................................................................................................................2313.00300300
.........................................................................................ATAAGGTAGAGAAAATGTTGTCG...................................................................................................................................................2313.00310200
.........................................................................................ATAAGGTAGAGAAAATGTTGTCCC..................................................................................................................................................2412.00200200
.................................................................................................................................................CATCACTTTCACTAGCTTTCAA............................................................................................2212.00200200
.......................................................................................................................................TT----AAGACATCACTTTCACTA....................................................................................................2011.00100001
.......................................................................................................................................TT----AAGACATCACTTTCACTAGCA.................................................................................................2311.00100100
.................................................................................................................................................CATCACTTTCACTAGCTTTC..............................................................................................2011.00100100
.....................................................................TAATAAGG-ACCCTCAAGTT..........................................................................................................................................................................1911.00110000
........................................................................................................................................T----AAGACATCACTTTCACTAGCT.................................................................................................2211.00100001
.......................................................................................................................................TT----AAGACATCACTTTCACTAGCG.................................................................................................2311.00100100
.......................................................................................................................................TT----AAGACATCACTTTCACTAGCT.................................................................................................2311.00110000
...........................................................................................AAGGTAGAGAAAATGTTGTC....................................................................................................................................................2011.00100100
.........................................................................................ATAAGGTAGAGAAAATGTTGTT....................................................................................................................................................2260.83500500
.........................................................................................ATAAGGTAGAGAAAATGTT.......................................................................................................................................................1960.67400400
.........................................................................................ATAAGGTAGAGAAAATGTTGTA....................................................................................................................................................2260.33200200
.........................................................................................ATAAGGTAGAGAAAATGT........................................................................................................................................................1860.17100001
........................................................................................TATAAGGTAGAGAAAATGTTGT.....................................................................................................................................................2260.17100100
..........................................................................................TAAGGTAGAGAAAATGTTGT.....................................................................................................................................................2060.17101000
.........................................................................................ATAAGGTAGAGAAAATGTCT......................................................................................................................................................20100.10100100
droVir3
CAACTCAA-TTTACA--CAC--ACA--CA------CACACATAA-----GA----------------------AAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTAC---TTTACATAT--------GGT----GAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA--AATGCAACGG--------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................ATAAGGTAGAGAAATTGTTGTCT...................................................................................................................................................231452353.0045235343722417134983055795910172618101383231568429120323943379189263263231191604212413091328426856628584317648935243732626700000000010200177133028261343626316133181361231914315383110228
.........................................................................................ATAAGGTAGAGAAATTGTTGTCC...................................................................................................................................................23124475.00244751360483262911451252943827001400040217220141310419042207937294622343000016279700000000000000000800012490580002313207293110002
.........................................................................................ATAAGGTAGAGAAATTGTTGTC....................................................................................................................................................22120497.002049717044127167160177260505953004100240111902297131718248821206892252081610309139500000000000000000401252307190054515327452471214
.........................................................................................ATAAGGTAGAGAAATTGTTGT.....................................................................................................................................................2118724.0087242038324512449643515164100320140036010321254626147810493601114125700141114970000000000000000000231420228107159191016470033
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTC..................................................................................................................................................2418340.0083403203061186154715448000200020747109221036796933289540601000061172000000000000000002000240000001121421820600000
..........................................................................................TAAGGTAGAGAAATTGTTGTCT...................................................................................................................................................2213286.003286504314312155408100250020000001641010207240179782540102001012140000000000000000000109600200010301000001
.........................................................................................ATAAGGTAGAGAAATTGTTG......................................................................................................................................................2011084.0010840014051199488130500000010068009216312911348148058010021320000000000000000000011400310110010001011
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTT..................................................................................................................................................241691.0069100123480103111600000000002400120331057714851460020145000000000000000000000300000011102000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCCC..................................................................................................................................................241497.0049760000761002900000000005300000003133257006500000820000000000000000000002500000000001000000
..........................................................................................TAAGGTAGAGAAATTGTTGTCTA..................................................................................................................................................231431.00431000014317019500000000003700000003426143402300000310000000000000000000001800000020100000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTA..................................................................................................................................................241197.001970000513133121111002100000050010027137513030030511000000000000000000010300000010001000000
................................................................................................................................................ACATCAAT-TCACTAGCTTTCA.............................................................................................211194.0019400101400000000000010190010000492413320120000036000000000000000000000100000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTC......................................................................................................................................................201192.001921000122000480000000000130000000151532801100001240000000000000000000001000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTCT---..............................................................................................................................................251167.001670000039011380000000000700000001520213050000019000000000000000000000700000000000000000
................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA............................................................................................221167.001670010140000000000000011000000144242045000000016000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTTC...................................................................................................................................................231166.0016620000170012000000000001800000001817826090000020000000000000000000000700000010002000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCA...................................................................................................................................................231164.001640061111460350000000100600202231114810040030150000000000000000000001800000103500000001
............................................................................................AGGTAGAGAAATTGTTGTCT...................................................................................................................................................201157.001570000128124030100000000013000000011932090000024000000000000000000000100000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCCT..................................................................................................................................................241138.0013810100700019000000000020000000013143180120000026000000000000000000000300000010000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCG...................................................................................................................................................231110.001102510004019030100000000090000000162103000005000000000000000000000100000001100000000
..............................................................................................GTAGAGAAATTGTTGTCT...................................................................................................................................................18198.009800101180161900000000001200000009110505000019000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTT.......................................................................................................................................................19191.00910000016040900000001008000001012135805000009000000000000000000000000000000000000000
...........................................................................................AAGGTAGAGAAATTGTTGTCT...................................................................................................................................................21180.008000720009113000000000050000000101021202000006000000000000000000000100000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTT....................................................................................................................................................22167.0067000003060180000000000600000016311403000003000000000000000000000300000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTCA---..............................................................................................................................................25162.006200000100016000000000080010000758203000017000000000000000000000300000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTCC......................................................................................................................................................20160.006010000300111000000000090000000765903000003000000000000000000000200000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTTT---..............................................................................................................................................25160.006000000007017000000000020000000762603000008000000000000000000000200000000000000000
.............................................................................................GGTAGAGAAATTGTTGTCT...................................................................................................................................................19147.004700000100516000000000040000000850101000006000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGT........................................................................................................................................................18145.00450000020211000000000050000000753607000004000000000000000000000000000002000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTA....................................................................................................................................................22141.00410010041009000100000080000020141400000003000000000000000000000000000100000010000
..........................................................................................TAAGGTAGAGAAATTGTTGTC....................................................................................................................................................21138.00380080010407000000000010000000412503000001000000000000000000000100000000000000000
..........................................................................................TAAGGTAGAGAAATTGTTGTCC...................................................................................................................................................22134.00340030050006000000000000000000423204000004000000000000000000000100000000000000000
..........................................................................................TAAGGTAGAGAAATTGTTGTCTC..................................................................................................................................................23134.00340010070118000000000020000000212201000005000000000000000000000100000000000000000
................................................................................................................................................ACATCAAT-TCACTAGCTTTC..............................................................................................20129.00290000010201000000000000000000551503000006000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTTT---C.............................................................................................................................................26129.002900000200010000000000020000000121402000005000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTTCT..................................................................................................................................................24125.00250000010705000000000010000000210000000000000000000000000000000800000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTC.......................................................................................................................................................19124.002400000300011000000000010000000120400000002000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTCT---C.............................................................................................................................................26124.00240000020001000000000010000000563500000001000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTAC...................................................................................................................................................23123.00230000030203000000000040000000111004000003000000000000000000000100000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTAA---..............................................................................................................................................25123.00230000001030010000000030000032011000005020000000000000000000000000000010000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGC.....................................................................................................................................................21120.00200000010804000000000030000000011001000001000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTAA...................................................................................................................................................23118.00180010001010010000000000000010000000010000000000000000000000000400000000103020011
..........................................................................................TAAGGTAGAGAAATTGTTGTCTAT---..............................................................................................................................................24116.00160000010300000000000010000000120500000001000000000000000000000200000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTAT---..............................................................................................................................................25115.00150000000330300100000000000030000000001010000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTAA---A.............................................................................................................................................26115.00150010100000000000000000000034000000005000000000000000000000000000100000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTTCC..................................................................................................................................................24115.00150000020003000000000000000000320102000002000000000000000000000000000000000000000
............................................................................................AGGTAGAGAAATTGTTGTCC...................................................................................................................................................20113.00130000060000000000000000000000100101000002000000000000000000000200000000000000000
........................................................................................TATAAGGTAGAGAAATTGTTGTCT...................................................................................................................................................24112.00120010000203000000000000000000111002000000000000000000000000000100000000000000000
............................................................................................AGGTAGAGAAATTGTTGTC....................................................................................................................................................19111.00110000020002000000000000000000102000000004000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTTA---..............................................................................................................................................25111.00110000000015000000000010000000111000000001000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTCC.....................................................................................................................................................21110.00100000000003000000000000000001110102000001000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCTG..................................................................................................................................................24110.00100000010011000000000010000000120100000002000000000000000000000000000000000000000
.............................................................................................GGTAGAGAAATTGTTGTCTC..................................................................................................................................................2019.0090000030001000000000020000000000001000002000000000000000000000000000000000000000
..............................................................................................GTAGAGAAATTGTTGTCC...................................................................................................................................................1819.0090000000007000000000010000000010000000000000000000000000000000000000000000000000
.........................................................................................ATAAGGTAGAGAAATTGTTGTCCCT---..............................................................................................................................................2519.0090000000002000000000010000000210200000001000000000000000000000000000000000000000
droMoj3
T-------------------------------------------------------------------------AGA-GCGCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCAT----ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA--AATGCAGCA---------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................ATAAGGTAGAGATATTGTTGTCT...................................................................................................................................................23114885.001488552089144114599
.........................................................................................ATAAGGTAGAGATATTGTTGT.....................................................................................................................................................2112016.002016170468701866
.........................................................................................ATAAGGTAGAGATATTGTTGTC....................................................................................................................................................2211358.00135811091701321
.........................................................................................ATAAGGTAGAGATATTGTTGTCTC..................................................................................................................................................241867.0086780390847
..........................................................................................TAAGGTAGAGATATTGTTGTCT...................................................................................................................................................221513.0051350460498
..........................................................................................TAAGGTAGAGATATTGTTGTCTTC.................................................................................................................................................241301.0030130000298
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTC.................................................................................................................................................251130.0013010000129
.........................................................................................ATAAGGTAGAGATATTGTTGTCC...................................................................................................................................................231119.0011910001117
.........................................................................................ATAAGGTAGAGATATTGTTG......................................................................................................................................................201112.0011240312093
.........................................................................................ATAAGGTAGAGATATTGTTGTCTCC.................................................................................................................................................25188.00886001081
.........................................................................................ATAAGGTAGAGATATTGTTGTCTT..................................................................................................................................................24188.00881022083
..........................................................................................TAAGGTAGAGATATTGTTGTCTT..................................................................................................................................................23167.00674002061
..........................................................................................TAAGGTAGAGATATTGTTGTC....................................................................................................................................................21154.00542001051
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTTC................................................................................................................................................26134.00340000034
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTT.................................................................................................................................................25131.00310002029
..........................................................................................TAAGGTAGAGATATTGTTGTCTTT.................................................................................................................................................24127.00270000027
..........................................................................................TAAGGTAGAGATATTGTTGTCTTTC................................................................................................................................................25126.00260000026
.........................................................................................ATAAGGTAGAGATATTGTTGTCTCA.................................................................................................................................................25116.00160001015
..........................................................................................TAAGGTAGAGATATTGTTGTCTTCC................................................................................................................................................25116.00160000016
.........................................................................................ATAAGGTAGAGATATTGTTGTCA...................................................................................................................................................23116.00160001015
..........................................................................................TAAGGTAGAGATATTGTTGTCTC..................................................................................................................................................23115.00151010013
..........................................................................................TAAGGTAGAGATATTGTTGT.....................................................................................................................................................20115.00151002012
.........................................................................................ATAAGGTAGAGATATTGTTGC.....................................................................................................................................................21110.0010100009
.........................................................................................ATAAGGTAGAGATATTGTTGTCTA..................................................................................................................................................2418.008100007
.........................................................................................ATAAGGTAGAGATATTGTTGTCTCCC................................................................................................................................................2616.006000006
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTCC................................................................................................................................................2616.006000006
.........................................................................................ATAAGGTAGAGATATTGTTGTT....................................................................................................................................................2216.006000006
..........................................................................................TAAGGTAGAGATATTGTTGTCTTCA................................................................................................................................................2514.004000004
..........................................................................................TAAGGTAGAGATATTGTTGTCC...................................................................................................................................................2214.004000004
.........................................................................................ATAAGGTAGAGATATTGTTGTCCC..................................................................................................................................................2414.004000004
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTTT................................................................................................................................................2613.003000003
...........................................................................................AAGGTAGAGATATTGTTGTCT...................................................................................................................................................2113.003200001
.........................................................................................ATAAGGTAGAGATATTGTT.......................................................................................................................................................1913.003001002
.........................................................................................ATAAGGTAGAGATATTGTC.......................................................................................................................................................1913.003000003
..........................................................................................TAAGGTAGAGATATTGTTGTCTTA.................................................................................................................................................2412.002000002
.........................................................................................ATAAGGTAGAGATATTGTTC......................................................................................................................................................2012.002000002
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTCA................................................................................................................................................2612.002000002
.........................................................................................ATAAGGTAGAGATATTGTTGTA....................................................................................................................................................2212.002000002
.........................................................................................ATAAGGTAGAGATATTGTTGA.....................................................................................................................................................2112.002000200
................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA............................................................................................2211.001100000
..........................................................................................TAAGGTAGAGATATTGTTGTCTTTTTC..............................................................................................................................................2711.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTCCCC.................................................................................................................................................2511.001000001
.........................................................................................ATAAGGTAGAGATATTGT........................................................................................................................................................1811.001001000
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTA.................................................................................................................................................2511.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTCTCG.................................................................................................................................................2511.001000001
................................................................................................................TTTTGCAT----ATAGCACTCTGTTATGT......................................................................................................................2511.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTG....................................................................................................................................................2211.001100000
.........................................................................................ATAAGGTAGAGATATTGTTT......................................................................................................................................................2011.001001000
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTTAA...............................................................................................................................................2711.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTTC...................................................................................................................................................2311.001000100
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTTTCT..............................................................................................................................................2811.001000001
..........................................................................................TAAGGTAGAGATATTGTTGTCTCA.................................................................................................................................................2411.001000001
............................................................................................AGGTAGAGATATTGTTGTCT...................................................................................................................................................2011.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTTTC...............................................................................................................................................2711.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTCTTTTT...............................................................................................................................................2711.001000100
..........................................................................................TAAGGTAGAGATATTGTTG......................................................................................................................................................1911.001100000
..........................................................................................TAAGGTAGAGATATTGTTGTT....................................................................................................................................................2111.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTCTCCA................................................................................................................................................2611.001000001
.........................................................................................ATAAGGTAGAGATATTGTTGTAA...................................................................................................................................................2311.001100000
...........................................................................................AAGGTAGAGATATTGTTGTC....................................................................................................................................................2011.001000001
..........................................................................................TAAGGTAGAGATATTGTTGTCTTTT................................................................................................................................................2511.001000001
..........................................................................................TAAGGTAGAGATATTGTTGTCTTCCC...............................................................................................................................................2611.001000001
.........................................................................................ATAAGGTAGAGATATTGTCT......................................................................................................................................................2011.001000001
droGri2
AG-C-AGG--TTACT--TT----CA--TA------ACACACTC------------------------------AAGA-GCTCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA---------------A----AAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA--AATGCAACGG--------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................ATAAGGTAGAGATTTTGTTGTCT...................................................................................................................................................2311234.001234341200
.........................................................................................ATAAGGTAGAGATTTTGTTGT.....................................................................................................................................................211282.002827275
.........................................................................................ATAAGGTAGAGATTTTGTTGTC....................................................................................................................................................221100.00100397
.........................................................................................ATAAGGTAGAGATTTTGTTGTCC...................................................................................................................................................2318.00808
..........................................................................................TAAGGTAGAGATTTTGTTGTCT...................................................................................................................................................2217.00743
.........................................................................................ATAAGGTAGAGATTTTGTTGTCG...................................................................................................................................................2315.00505
.........................................................................................ATAAGGTAGAGATTTTGTTG......................................................................................................................................................2015.00505
.........................................................................................ATAAGGTAGAGATTTTGTTGTCA...................................................................................................................................................2312.00202
.........................................................................................ATAAGGTAGAGATTTTGTTGTA....................................................................................................................................................2212.00202
.........................................................................................ATAAGGTAGAGATTTTGTTGTCTT..................................................................................................................................................2411.00101
.........................................................................................ATAAGGTAGAGATTTTGTCT......................................................................................................................................................2011.00101
...........................................................................................AAGGTAGAGATTTTGTTGTCT...................................................................................................................................................2111.00110
..........................................................................................TAAGGTAGAGATTTTGTTGTCTT..................................................................................................................................................2311.00101
.........................................................................................ATAAGGTAGAGATTTTGTTGTCTG..................................................................................................................................................2411.00110

Generated: 10/20/2015 at 07:45 PM