dse_168

TTCACAGACTGCGAGGATCGCAGGAAGCACCTCCGCATGCAGTGCCGTGGCATTGGTGAGGACATCTCCAATGGCTTAGTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGCTGTCAACTTCGCGCAATGGAATACCAACTCCGGAGTGC *********************************..((((((((..((((((((((((.(((...((((((((...........))))))))...))).))))))))))))..)))))))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	V115 head	M054 female body	V114 embryo
........................................................................................TTGGATTAGTTATCATCAATGCC...................................................	23	0	1	36.00	36	25	5	1	5
........................................................................................TTGGATTAGTTATCATCAATGC....................................................	22	0	1	27.00	27	20	5	1	1
.........................................................................................TGGATTAGTTATCATCAATGCC...................................................	22	0	1	15.00	15	5	1	8	1
........................................................................................TTGGATTAGTTATCATCAATG.....................................................	21	0	1	6.00	6	4	1	0	1
.........................................................................................TGGATTAGTTATCATCAATGC....................................................	21	0	1	3.00	3	1	0	1	1
.............................CCTCCGCATGCAGTGCCGTGG................................................................................................................	21	0	1	2.00	2	1	1	0	0
............................ACCTCCGCATGCAGTGCCGTGG................................................................................................................	22	0	1	1.00	1	1	0	0	0
..............................CTCCGCATGCAGTGCCGTGG................................................................................................................	20	0	1	1.00	1	1	0	0	0
........................................................................................TTGGATTAGTTATCATCAATGCT...................................................	23	1	1	1.00	1	1	0	0	0
........................................................................................TTGGATTAGTTATCCTCAAT......................................................	20	1	1	1.00	1	1	0	0	0
.........................................................................................GAGATTAGTTATCATCAATGCC...................................................	22	2	1	1.00	1	0	1	0	0
........................................................................................TTGGATTAGTTATCATCACTGC....................................................	22	1	1	1.00	1	1	0	0	0
........................................................................................TTGGATTAGTTATCATCACTGCC...................................................	23	1	1	1.00	1	1	0	0	0
........................................................................................TTGGATTATTTATCATCAATGC....................................................	22	1	1	1.00	1	1	0	0	0
...........................CACCTCCGCATGCAGTGCCGTGG................................................................................................................	23	0	1	1.00	1	1	0	0	0
........................................................................................TTGGATTAGTTATCATCAATGCA...................................................	23	1	1	1.00	1	0	0	0	1
........................................................................................TTGGATTAGTTATCATCAATGCCT..................................................	24	1	1	1.00	1	1	0	0	0
........................................................................................TTGGATTAGTTATCATCAATGCAA..................................................	24	2	1	1.00	1	0	0	0	1
............................................................................................................GCCGGTGCACTGAAGCTGC...................................	19	2	3	0.33	1	0	0	1	0
.......................................................................................ATTGGATTAGTTCTCATTGAT......................................................	21	3	11	0.09	1	1	0	0	0
.......................................................................................................TCAATTCCGCTGCATTGCAG.......................................	20	3	20	0.05	1	0	1	0	0

AAGTGTCTGACGCTCCTAGCGTCCTTCGTGGAGGCGTACGTCACGGCACCGTAACCACTCCTGTAGAGGTTACCGAATCAAGAGTAGTAACCTAATCAATAGTAGTTACGGCCACGTGACGTCGACAGTTGAAGCGCGTTACCTTATGGTTGAGGCCTCACG *********************************..((((((((..((((((((((((.(((...((((((((...........))))))))...))).))))))))))))..)))))))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V115 head
...........................GTGGAGGCGTACGTCACG.....................................................................................................................	18	0	1	1.00	1	1	0
...............................................................................................................................GTTGAAGCGTGGTACCAT.................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Type	Alignment
droSec2	scaffold_8:1735209-1735370 +	dse_168	candidate-rescued	TTCACAGACTGCGAGG----------AT----------------------------------------CGCAGGAAGCAC-----------------------------------------------------------------------------CTCCGCA---TGCAGTGCCGTGGCATTGGTGAGGACATCTCCAATGGCTTAG--TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC-----TGTCAACTTCG--C----GCAA--TGGA-------------------------------------------------------ATACC-A----------------AC--TCCGGA----GTGC
droSim2	x:18342499-18342668 +	dsi-mir-976	Known_mirbase	TTCACAGACTGCGAGG----------AT----------------------------------------CGAAGGAAGCACTGGAAC-----------------------------------------------------------------------CTCCGCA---TGCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTGG--TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGC---TGTCAACTTCG--C----GCAA--TGGA-------------------------------------------------------ATACC-A----------------AC--TCCGGA----GTGC
dm3	chrX:19452871-19453062 +	dme-mir-976	Known_mirbase	TTCACAGAATTCGAGG----------AT----------------------------------------CGACGGATGCACTGGAATGTC-------------------------------------TGCAACGGCGGTG-GTGGGC------AT-----CGCCA---TGCAGTGCCGCGGCATTGGTGAGGCCATCTCCAATGGATTAG--TTCTCAACATTGGATTAGTTATCATCAATGCCGGTGCACTGCACC-----TAACAACATCG--C----GCCG--GGGA-------------------------------------------------------ATCCC-A----------------ACACAACGAA----TCAA
droEre2	scaffold_4690:9688856-9689056 +	der_56	confident	TCCACAGGCTGCAAGG----------AT----------------------------------------CGGAGGAAGCCTTGAAGC-------------------------------------------TCCAGAGGTGTGCCAGA------AT------CGCA---TGCAGTGCCTCGACATTGGTGAGGGCATCTCCAATGGG-GAG--CCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC-----TACGAACTGAG--C----ATTT---------------------------------------------------GGGGATCGGGATCCC-GGATTCGGAGTCAACAAA---C---TC----TTGT
droYak3	X:11885749-11885975 -	dya_50	confident	TCCGCAGGCTACGAGG----------AT------------------CGGGAGATC------GGGAGTTTGGAGGAGGCATTGAAGT-------------------------------------------TCCAGAGGTGAGTGAGA------AT------CGCA---TGCAGTGCCACGACATTGGTGAGGGCATCTCCAATGGG-GAC--CCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC-----TACCAACTTCG--C----ACGG--T-TCCTATTC------------------------CTATTCCG-----------------ATTCC--GATTCGGAATCAACCAAG--TGCGGA----CAGC
droEug1	scf7180000409230:879636-879804 -			TCCGGAAACTTCGAAT----------AA---------------------------T------------CGAGGAAAGCATCGAAAC------------------------------------------------------------------AT------CTGA---TGCAGCGCCTTGACATTGGCGAGGCCAACTCCAATGTC-GAA--TCGAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCTGTAAT-----GACCAACGTAC--C----ATAT--CTTTATATCC------------------------ATATC------------------------------------------------CATGT----CCAG
droBia1	scf7180000302069:1150971-1151174 -			TCCGGAGACTTCGAAA----------GC---------------------------GTGAGGGG-------------------------------GGGGAA-----------A--TCAAT----------------GCTG-GTGGGG-----ATG------AGGA---AGCACCGCCTCGGCATTGGTGAGGGCACCTCCAATGGC-GAG--CCGGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCTGCACC-----GACCAACGCCA--C----ATACGGTGGG--ATCCC--CAACGTCGCAGTGGGTCCTAT--GTTCCAGTACT-------------------------------------------------AGTC
droTak1	scf7180000415169:844774-844979 -			TCCGGAGACTTCGAAG----------AATCTATTCTAAAGCTGAATCTGGAGAGG------AGGA-------------------------------------------------------------------------------GA-----AAG------AGGA---AGCATCGCCTCGACATTATTGAGGGCACCTCCAATGGC-GAG--CCGACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCTGCACT-----GACCAACTGTT--CGTCCATAAGGTGAG--ATCT------------AAT------------------------GGGTATCGTATTGTCTA----------------AT--TATTGA----ATCT
droEle1	scf7180000490751:1118732-1118902 +			TCCGGAGCCTCCAAAT----------------------------------------------------------------------TGCATCACCATCACC-TCACCATCACCATCAATACC---------------------------------TG--CACAA---AGCATCGCCTCGCCATTGGTGAGGGCACCTCCAATGGC-GAG--CCGGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCTGCACT-----GACCAGCAGAC--CGAC-AGAT------------------------------------------------------------------------------------------CGTG----ATCC
droRho1	scf7180000761121:190069-190256 -			TCCGGAGTCCTCGAAC----------GT---------------------------TGGAGGAC-------------------------------CAGGAC-----------CTCGG----------------------------GA------ACCGC--CTGCAAACAGCATCACCTCGCCATTGGTGAGGGCATCTCCAATGAC-GAG--TCGGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGTGCACT-----GACCAGCAGAC--TGACCT-------------------------------------CT--CCGCTAGCACC----------AGATCCC-A----------------AA--TCTTAG----ATCC
droFic1	scf7180000454073:1733864-1734035 +			TCCGGAGTCTTCAGCCGGCGAAGGACAT----------------------------------------CGAAGGAA--------------------------------------------------T-----------------GA------AT---CACCGCAGACAGCGGCGCCCCGCCATTAATAAGGACCTCTCCAATGGC-AGACCGTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCCGCACC-----GACCACCACAT--T-----------TTTTT-------------------------------------------------CTAA-----------------------GT--GCCTAA----TTCC
droKik1	scf7180000302517:1183676-1183844 +			TGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------GA---GGCATTGCCTCGCCATTGGTGAGAGCATCTCCAATGAC-GGCACTTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATTGCACC-----TACTCCAGCAA--C----GGCTATCCAG--GTAAC--CAGCTAAACAGCTACCCATCT--ACTCAGCTCCTCTG---------------------------------------GGAGTCGAGGC
droAna3	scaffold_13417:2467559-2467710 -	dan_128	candidate-rescued	TCTGGAGCCACTGCCG----------TC---------------------------CAGAGGGT-----CGAGC-------------------------------G------CTACCGAT-------------------------------GC---TC--CCCGA---AGGAGCGCCTCGACATTGGTGAGTTCATCTCCAATGGT-CAG--TAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTC-CTACCCCC---------------------------------------------------------------------------------------------------------AC--ACCAGC----GAGG
droBip1	scf7180000395874:39924-40075 -			TCTAGAGCCACTTCCG----------TC---------------------------CAGAGGGT-----CGAGC-------------------------------G------CTAGCGAT-------------------------------GC---TC--CGTGA---AGGAGCGCCTCGCCATTGGTGGGGGCGTCTCCAATGGC-CAG--AAGCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTC-CTTCCTCC---------------------------------------------------------------------------------------------------------AC--ACCAGC----TACC
droVir3	scaffold_13042:906691-906919 -	dvi-mir-976	Known_mirbase	CACGTAGCCGCAATCA----------GC---------------------------CCGCA-GC-----CAAGT-------------GTTATCGGTATCGTTATCGTTATCGTTATCGTTATCAGAAT----TAATTATC-GTTGAAGTGCGT---TC--TTTGG---TGCAGCCCCTCGCGATTGATGATAGCATCTCCAATGAG-CA-----TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACC-----AGCAACAACAACAG-GAAT-------------AGC--AACGGAA-----------------------------------------ACA-G----------GA--------ACCGGAACAGAAAC
droMoj3	scaffold_6328:2900941-2901139 -	dmo_205	confident	CACATAGCCGCAATCA----------AA---------------------------CAACTGGC-----CCAAAGT-----------GTTATCGTTATCGTTATCG------CTAGCGAC-------------------------------GCTT------CGGG---TGCAGCCCCTCGCGATTGATGAAAGCATCTCCAATGAG-TA-----TTTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATC-----AGCAACAACAACAA-CATG-------------AGTTAAA-------------------------------------------------------CGAAATGAACC-AG--TTCGTT----GTTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

TTCACAGACTGCGAGG----------AT----------------------------------------CGCAGGAAGCAC-----------------------------------------------------------------------------CTCCGCA---TGCAGTGCCGTGGCATTGGTGAGGACATCTCCAATGGCTTAG--TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC-----TGTCAACTTCG--C----GCAA--TGGA-------------------------------------------------------ATACC-A----------------AC--TCCGGA----GTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC..............................................................................................................................................	23	1	36.00	36	1	25	5	5
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC...............................................................................................................................................	22	1	27.00	27	1	20	1	5
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC..............................................................................................................................................	22	1	15.00	15	8	5	1	1
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG................................................................................................................................................	21	1	6.00	6	0	4	1	1
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC...............................................................................................................................................	21	1	3.00	3	1	1	1	0
...............................................................................C-----------------------------------------------------------------------------CTCCGCA---TGCAGTGCCGTGG.............................................................................................................................................................................................................	21	1	2.00	2	0	1	0	1
..............................................................................AC-----------------------------------------------------------------------------CTCCGCA---TGCAGTGCCGTGG.............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.............................................................................................................................................................CTCCGCA---TGCAGTGCCGTGG.............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT..............................................................................................................................................	23	1	1.00	1	0	1	0	0
.............................................................................CAC-----------------------------------------------------------------------------CTCCGCA---TGCAGTGCCGTGG.............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCA..............................................................................................................................................	23	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT.............................................................................................................................................	24	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAA.............................................................................................................................................	24	1	1.00	1	0	0	1	0

droSim2

TTCACAGACTGCGAGG----------AT----------------------------------------CGAAGGAAGCACTGGAAC-----------------------------------------------------------------------CTCCGCA---TGCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTGG--TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGC---TGTCAACTTCG--C----GCAA--TGGA-------------------------------------------------------ATACC-A----------------AC--TCCGGA----GTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC..............................................................................................................................................	23	1	1235.00	1235	36	958	5	0	202	9	3	3	0	0	0	0	0	19	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC..............................................................................................................................................	22	1	1107.00	1107	0	3	0	0	921	25	3	0	1	0	0	0	0	154	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCG.............................................................................................................................................	24	1	464.00	464	0	0	0	0	458	6	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAAT.................................................................................................................................................	19	1	285.00	285	0	0	0	0	278	7	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAA..................................................................................................................................................	18	1	266.00	266	0	0	0	0	263	3	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCG.............................................................................................................................................	23	1	179.00	179	0	0	0	0	171	7	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC...............................................................................................................................................	22	1	169.00	169	1	21	0	2	125	1	1	0	0	0	0	0	0	18	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCA...................................................................................................................................................	18	1	126.00	126	0	1	0	0	123	2	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAA..................................................................................................................................................	19	1	105.00	105	0	2	0	0	100	2	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAAT.................................................................................................................................................	20	1	100.00	100	0	0	0	0	98	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC...............................................................................................................................................	21	1	93.00	93	0	0	0	0	70	3	1	0	0	0	0	0	0	19	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATG................................................................................................................................................	20	1	90.00	90	0	0	0	0	74	4	0	0	0	0	0	0	0	12	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG................................................................................................................................................	21	1	82.00	82	2	27	0	0	50	0	0	0	0	0	0	0	0	3	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCA.............................................................................................................................................	23	1	22.00	22	0	0	0	0	0	0	0	0	1	1	0	0	0	20	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTCCA.........................................................................................................................................................................................	20	1	19.00	19	0	1	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTCCAAT.......................................................................................................................................................................................	22	1	18.00	18	0	0	0	0	2	0	0	0	0	0	0	0	0	16	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT.............................................................................................................................................	24	1	14.00	14	1	12	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTCCAA........................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	6	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCA.............................................................................................................................................	24	1	5.00	5	0	1	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
..............................................................................................................................................................................................................................GGATTAGTTATCATCAATGCC..............................................................................................................................................	21	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTCC..........................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GGATTAGTTATCATCAAT.................................................................................................................................................	18	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTAGTTATCATCAATGCCGGT...........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGT...............................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCGG............................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCC.............................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCT.............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............................................................................................................................................................................................................................GGATTAGTTATCATCAATGCCG.............................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGACATCTCCAATG......................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................TTGGTGAGGACATCTCCAATG......................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGT...............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCT..............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCAA............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT..............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTC...........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTATCATCAATG................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................CGTGGCATTGGTGAGGACATCT............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................TGGA-------------------------------------------------------ATACC-A----------------AC--TCCGGA----GTG.	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATC....................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTCCAATT......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................TTAGTTATCATCAATGCC..............................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGACATCTCCA.........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTAGTTATCATCAATGCCGGAT..........................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTCT..........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTATCATCAATGC...............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CATTGGTGAGGACATCTT...........................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dm3

TTCACAGAATTCGAGG----------AT----------------------------------------CGACGGATGCACTGGAATGTC-------------------------------------TGCAACGGCGGTG-GTGGGC------AT-----CGCCA---TGCAGTGCCGCGGCATTGGTGAGGCCATCTCCAATGGATTAG--TTCTCAACATTGGATTAGTTATCATCAATGCCGGTGCACTGCACC-----TAACAACATCG--C----GCCG--GGGA-------------------------------------------------------ATCCC-A----------------ACACAACGAA----TCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC...............................................................................................................................................	22	1	36299.00	36299	0	0	0	0	0	0	0	1	1	1	1	15	0	0	0	0	0	0	0	0	0	0	0	5233	0	0	0	0	0	0	0	0	0	0	0	1	2	2	3	1	10	2	4	1	7	0	1	0	1	3	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	7	1	0	0	0	0	2	5	1	2	32	1	0	35	0	1	4	7	0	2	0	0	3	0	3	2	0	35	1	3	1	30	0	0	0	0	1	0	0	0	3	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	5	0	0	3	27	0	9	0	0	0	7	2	0	0	0	0	0	12	638	3	859	0	0	0	0	466	0	579	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	29	63	2	0	4	6	6	27	34	5	1	87	4	0	0	2	0	1	0	0	0	0	0	0	0	1	3	0	2	230	1	0	135	1	1	21	3	11	1	2	0	2	0	0	3	88	1	4940	2	2	15	1	0	2	1	18	1	0	1	3	0	3	0	27	3	0	1	3	7	4	6	10	4	33	0	19	0	2	2	0	1	93	0	44	45	0	0	3	4	1	18	1	12144	6	1	1	2	6	0	50	0	6	0	45	0	11	3	2	0	9	9686	11	72	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG................................................................................................................................................	21	1	12374.00	12374	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	901	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	2	0	1	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	3	0	0	1	53	0	15	0	1	0	4	0	0	0	0	0	0	7	1227	8	1354	0	0	0	0	980	0	1041	0	0	0	0	0	0	1	1	0	0	0	2	1	0	0	0	0	16	35	0	0	0	0	3	5	0	0	0	6	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	62	0	0	46	0	0	4	2	1	0	0	0	0	0	0	1	24	2	2129	3	0	6	0	0	0	0	3	0	0	0	1	0	0	0	7	2	0	0	0	3	0	2	0	0	49	0	2	0	0	0	0	1	154	0	140	188	0	0	0	3	0	0	0	2379	2	0	0	0	1	0	10	0	7	0	31	1	3	3	1	0	0	1394	1	4	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC..............................................................................................................................................	23	1	5476.00	5476	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	569	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	1	0	0	0	7	0	0	16	1	0	1	2	0	1	0	0	2	0	0	2	0	15	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	7	1	0	0	0	0	3	0	0	0	0	0	0	4	212	1	165	0	0	0	0	81	0	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	7	0	0	3	1	1	5	12	4	0	14	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	12	1	0	2	2	0	0	1	0	0	0	1	1	5	0	1275	1	0	3	0	1	1	2	5	0	0	0	3	0	0	0	6	0	0	0	0	0	0	0	3	2	7	0	1	0	0	0	0	0	18	0	10	15	0	0	0	0	1	4	0	1473	0	0	1	0	2	0	8	0	1	0	4	0	0	0	0	0	1	1265	1	15	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAAT.................................................................................................................................................	20	1	1576.00	1576	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	178	6	89	0	0	0	0	115	0	104	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	3	0	1	0	0	0	0	0	0	0	1	1	412	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	13	0	4	6	0	0	0	0	0	1	1	298	0	0	0	0	0	0	2	0	1	0	8	1	0	1	0	0	0	249	0	2	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGATC.............................................................................................................................................	24	1	1447.00	1447	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1024	423	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC..............................................................................................................................................	22	1	1236.00	1236	0	0	0	0	0	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	550	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	12	0	0	8	0	0	0	0	0	2	0	0	2	0	0	5	0	13	6	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	3	0	0	0	0	0	0	0	0	0	0	2	13	0	20	0	0	0	0	3	0	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	3	6	2	0	19	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	150	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	163	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	204	0	2	0
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............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCAT............................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAT.............................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCC.............................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATCT...............................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATTT...............................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCC.............................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCTA.............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCCACAGGCTGCAAGG----------AT----------------------------------------CGGAGGAAGCCTTGAAGC-------------------------------------------TCCAGAGGTGTGCCAGA------AT------CGCA---TGCAGTGCCTCGACATTGGTGAGGGCATCTCCAATGGG-GAG--CCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC-----TACGAACTGAG--C----ATTT---------------------------------------------------GGGGATCGGGATCCC-GGATTCGGAGTCAACAAA---C---TC----TTGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGG.....................................................................................................................................................................................	22	1	612.00	612	0	0	7	0	544	61	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC...............................................................................................................................................	22	1	259.00	259	2	0	3	0	178	76	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG................................................................................................................................................	21	1	72.00	72	2	0	1	0	58	11	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATG......................................................................................................................................................................................	21	1	58.00	58	0	0	1	0	46	11	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT.................................................................................................................................................	21	1	37.00	37	1	0	0	0	26	10	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG................................................................................................................................................	22	1	23.00	23	0	0	0	0	20	3	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT.................................................................................................................................................	20	1	17.00	17	0	0	1	0	9	7	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAATG......................................................................................................................................................................................	22	1	10.00	10	0	0	0	0	5	5	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAAT.......................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	3	2	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCT..............................................................................................................................................	23	1	4.00	4	0	0	0	0	3	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCA..............................................................................................................................................	23	1	3.00	3	0	0	0	0	2	1	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGGA-...................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	2	1	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAAT.......................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGGT-...................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAA........................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGT...............................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGGT-T..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGC.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................AT------CGCA---TGCAGTGCCTCGAC............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGT.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATT................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATC................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATGT...............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC..............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAATT......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

droYak3

TCCGCAGGCTACGAGG----------AT------------------CGGGAGATC------GGGAGTTTGGAGGAGGCATTGAAGT-------------------------------------------TCCAGAGGTGAGTGAGA------AT------CGCA---TGCAGTGCCACGACATTGGTGAGGGCATCTCCAATGGG-GAC--CCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC-----TACCAACTTCG--C----ACGG--T-TCCTATTC------------------------CTATTCCG-----------------ATTCC--GATTCGGAATCAACCAAG--TGCGGA----CAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC...............................................................................................................................................	22	1	138.00	138	86	6	1	0	0	4	41	0	0	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGG.....................................................................................................................................................................................	22	1	69.00	69	0	3	1	0	0	2	63	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG................................................................................................................................................	21	1	60.00	60	7	3	0	0	1	1	48	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT.................................................................................................................................................	20	1	23.00	23	16	1	0	0	0	0	6	0	0	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATG......................................................................................................................................................................................	21	1	16.00	16	0	1	0	0	0	1	14	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC..............................................................................................................................................	23	1	16.00	16	16	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCT..............................................................................................................................................	23	1	8.00	8	7	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG................................................................................................................................................	22	1	5.00	5	1	0	0	0	0	0	4	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT.................................................................................................................................................	21	1	5.00	5	2	0	0	0	0	1	2	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAATG......................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	1	2	0	0	0	0
.........................................................................................................................................................T------CGCA---TGCAGTGCCACGAC............................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAAT.......................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCCT.............................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCTT........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGA.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGT...............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTCCAATA......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATGA...............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................ATTGGTGAGGGCATCTTTT.........................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TCCGGAAACTTCGAAT----------AA---------------------------T------------CGAGGAAAGCATCGAAAC------------------------------------------------------------------AT------CTGA---TGCAGCGCCTTGACATTGGCGAGGCCAACTCCAATGTC-GAA--TCGAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCTGTAAT-----GACCAACGTAC--C----ATAT--CTTTATATCC------------------------ATATC------------------------------------------------CATGT----CCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCGGAGACTTCGAAA----------GC---------------------------GTGAGGGG-------------------------------GGGGAA-----------A--TCAAT----------------GCTG-GTGGGG-----ATG------AGGA---AGCACCGCCTCGGCATTGGTGAGGGCACCTCCAATGGC-GAG--CCGGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCTGCACC-----GACCAACGCCA--C----ATACGGTGGG--ATCCC--CAACGTCGCAGTGGGTCCTAT--GTTCCAGTACT-------------------------------------------------AGTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCGGAGACTTCGAAG----------AATCTATTCTAAAGCTGAATCTGGAGAGG------AGGA-------------------------------------------------------------------------------GA-----AAG------AGGA---AGCATCGCCTCGACATTATTGAGGGCACCTCCAATGGC-GAG--CCGACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCTGCACT-----GACCAACTGTT--CGTCCATAAGGTGAG--ATCT------------AAT------------------------GGGTATCGTATTGTCTA----------------AT--TATTGA----ATCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCGGAGCCTCCAAAT----------------------------------------------------------------------TGCATCACCATCACC-TCACCATCACCATCAATACC---------------------------------TG--CACAA---AGCATCGCCTCGCCATTGGTGAGGGCACCTCCAATGGC-GAG--CCGGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCTGCACT-----GACCAGCAGAC--CGAC-AGAT------------------------------------------------------------------------------------------CGTG----ATCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCGGAGTCCTCGAAC----------GT---------------------------TGGAGGAC-------------------------------CAGGAC-----------CTCGG----------------------------GA------ACCGC--CTGCAAACAGCATCACCTCGCCATTGGTGAGGGCATCTCCAATGAC-GAG--TCGGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGTGCACT-----GACCAGCAGAC--TGACCT-------------------------------------CT--CCGCTAGCACC----------AGATCCC-A----------------AA--TCTTAG----ATCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCCGGAGTCTTCAGCCGGCGAAGGACAT----------------------------------------CGAAGGAA--------------------------------------------------T-----------------GA------AT---CACCGCAGACAGCGGCGCCCCGCCATTAATAAGGACCTCTCCAATGGC-AGACCGTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCCGCACC-----GACCACCACAT--T-----------TTTTT-------------------------------------------------CTAA-----------------------GT--GCCTAA----TTCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------GA---GGCATTGCCTCGCCATTGGTGAGAGCATCTCCAATGAC-GGCACTTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATTGCACC-----TACTCCAGCAA--C----GGCTATCCAG--GTAAC--CAGCTAAACAGCTACCCATCT--ACTCAGCTCCTCTG---------------------------------------GGAGTCGAGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCTGGAGCCACTGCCG----------TC---------------------------CAGAGGGT-----CGAGC-------------------------------G------CTACCGAT-------------------------------GC---TC--CCCGA---AGGAGCGCCTCGACATTGGTGAGTTCATCTCCAATGGT-CAG--TAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTC-CTACCCCC---------------------------------------------------------------------------------------------------------AC--ACCAGC----GAGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGG...............................................................................................................................................	22	1	830.00	830	59	0	1	61	281	428
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATG................................................................................................................................................	21	1	292.00	292	3	0	0	17	168	104
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGT...............................................................................................................................................	22	1	62.00	62	0	0	0	1	47	14
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGT..............................................................................................................................................	23	1	35.00	35	2	0	0	1	14	18
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGAT.................................................................................................................................................	20	1	18.00	18	0	0	0	4	13	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGC..............................................................................................................................................	23	1	11.00	11	1	0	0	0	6	4
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATG................................................................................................................................................	22	1	11.00	11	0	0	0	0	10	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGA..............................................................................................................................................	23	1	8.00	8	0	0	0	0	3	5
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGTT.............................................................................................................................................	24	1	6.00	6	1	0	0	0	3	2
.............................................................................................................................................................................................................................TGGATTAGTTCTCATTGATGG...............................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATT................................................................................................................................................	21	1	4.00	4	0	0	0	0	2	2
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATGT...............................................................................................................................................	23	1	3.00	3	0	0	0	0	3	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATA................................................................................................................................................	21	1	3.00	3	0	0	0	0	1	2
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATC................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1
...............................................................................................................................................................CCCGA---AGGAGCGCCTCGAC............................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATGA...............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGA..................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGTTT............................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGA..................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATAT...............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGAAT............................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................TC--CCCGA---AGGAGCGCCTCGAC............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGAT.................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGAAT.............................................................................................................................................	24	2	0.50	1	0	0	0	0	0	1

droBip1

TCTAGAGCCACTTCCG----------TC---------------------------CAGAGGGT-----CGAGC-------------------------------G------CTAGCGAT-------------------------------GC---TC--CGTGA---AGGAGCGCCTCGCCATTGGTGGGGGCGTCTCCAATGGC-CAG--AAGCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTC-CTTCCTCC---------------------------------------------------------------------------------------------------------AC--ACCAGC----TACC	Size	Hit Count	Total Norm	Total
No Reads

droVir3

CACGTAGCCGCAATCA----------GC---------------------------CCGCA-GC-----CAAGT-------------GTTATCGGTATCGTTATCGTTATCGTTATCGTTATCAGAAT----TAATTATC-GTTGAAGTGCGT---TC--TTTGG---TGCAGCCCCTCGCGATTGATGATAGCATCTCCAATGAG-CA-----TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACC-----AGCAACAACAACAG-GAAT-------------AGC--AACGGAA-----------------------------------------ACA-G----------GA--------ACCGGAACAGAAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCG.............................................................................................................................................	23	1	20902.00	20902	2	0	55	2	8	476	5	141	0	97	1	0	0	0	4	0	0	0	2	1	1337	5	1	4	3	8	7	4	5281	4252	1747	5989	3	535	2	1	2	2	4	859	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	24	0	5	11	9	4	1	0	0	0	0	0	0	3	1	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG................................................................................................................................................	21	1	4974.00	4974	20	0	12	0	5	227	9	56	0	62	0	0	0	0	0	0	0	0	0	0	541	0	0	12	4	0	1	2	759	760	332	984	1	346	1	0	1	0	2	715	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	77	0	0	3	8	3	4	6	8	4	2	0	1	0	0	1	1	3
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC...............................................................................................................................................	22	1	4673.00	4673	44	3	5	1	2	149	2	48	0	46	0	0	0	0	0	0	0	0	0	0	504	0	0	4	0	0	0	1	992	635	305	1043	0	226	1	0	0	1	3	541	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	56	0	2	1	9	15	1	8	1	6	6	2	2	0	1	2	2	2
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT.................................................................................................................................................	20	1	870.00	870	1	0	3	0	0	74	0	25	1	38	0	0	0	0	1	0	0	0	0	0	90	0	0	6	2	0	0	0	121	103	37	107	0	96	0	0	0	0	0	148	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	1	2	0	1	0	0	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCC..............................................................................................................................................	23	1	546.00	546	138	2	1	0	1	9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	64	0	0	1	0	0	0	0	44	34	24	103	0	24	0	0	0	0	1	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	4	0	0	0	0	0	0	15	4	16	7	4	2	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCC..............................................................................................................................................	22	1	496.00	496	0	0	3	0	0	7	0	1	0	4	0	0	0	0	0	0	0	0	1	0	12	0	0	1	0	0	0	1	146	95	44	134	0	6	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	15	0	0	0	1	0	1	0	2	2	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGC...............................................................................................................................................	21	1	421.00	421	0	0	9	1	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	105	90	35	132	0	8	1	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	3	1	0	0	0	0	0	0	0	0	1	1	1
...................................................................................................................................................................................CGATTGATGATAGCATCTCCA.........................................................................................................................................................................................	21	1	325.00	325	0	0	1	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	86	66	29	98	0	5	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAA........................................................................................................................................................................................	22	1	249.00	249	0	0	2	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	65	67	19	61	0	6	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAAT.......................................................................................................................................................................................	23	1	231.00	231	1	0	2	0	0	2	0	8	1	3	0	0	0	0	0	0	0	0	0	0	9	0	0	0	1	0	0	0	64	38	23	61	0	3	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATG......................................................................................................................................................................................	22	1	192.00	192	0	0	1	0	0	1	0	9	0	5	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	51	39	19	56	0	2	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATG................................................................................................................................................	20	1	168.00	168	0	0	5	0	0	5	0	1	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	43	37	14	46	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	1	1	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT...............................................................................................................................................	22	1	164.00	164	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0	25	28	5	33	0	24	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATC................................................................................................................................................	21	1	159.00	159	12	0	0	0	0	20	2	0	0	6	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	9	14	9	35	0	10	0	0	0	0	1	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAAT.......................................................................................................................................................................................	21	1	154.00	154	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	36	32	13	45	0	7	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGT............................................................................................................................................	24	1	130.00	130	0	0	0	0	0	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	28	28	10	35	0	7	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCC.............................................................................................................................................	24	1	92.00	92	18	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	6	5	6	17	0	3	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTC...........................................................................................................................................	25	1	74.00	74	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	8	12	6	20	0	9	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGA..................................................................................................................................................	19	1	70.00	70	7	0	0	0	0	7	0	0	0	3	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	3	3	1	6	0	7	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	2	4	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCT..............................................................................................................................................	23	1	70.00	70	4	0	1	0	0	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	10	9	4	10	0	5	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAA........................................................................................................................................................................................	20	1	61.00	61	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	18	16	5	15	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCC..........................................................................................................................................................................................	20	1	58.00	58	0	0	0	0	0	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	15	7	16	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCC.............................................................................................................................................	23	1	52.00	52	0	0	2	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	7	8	9	15	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTC.............................................................................................................................................	24	1	48.00	48	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	9	4	2	9	0	2	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TC--TTTGG---TGCAGCCCCTCG..............................................................................................................................................................................................................	19	1	43.00	43	0	0	0	0	1	2	0	10	0	3	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	9	5	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCT.............................................................................................................................................	23	1	43.00	43	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	12	2	5	10	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCA.........................................................................................................................................................................................	19	1	40.00	40	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	8	11	6	9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCG.............................................................................................................................................	24	1	38.00	38	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	7	4	2	11	0	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCA..............................................................................................................................................	23	1	36.00	36	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	2	4	4	9	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCT.............................................................................................................................................	24	1	35.00	35	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	5	1	4	7	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTC...........................................................................................................................................................................................	19	1	35.00	35	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	8	1	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................T---TC--TTTGG---TGCAGCCCCTCG..............................................................................................................................................................................................................	20	1	33.00	33	0	0	0	0	0	3	0	4	0	3	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	3	2	1	11	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATGT.....................................................................................................................................................................................	23	1	33.00	33	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	10	2	5	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGAT.................................................................................................................................................	19	1	33.00	33	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	9	8	0	6	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATT................................................................................................................................................	21	1	21.00	21	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	6	1	1	0	0	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCG.............................................................................................................................................	22	1	20.00	20	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	2	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAT........................................................................................................................................................................................	22	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCA.............................................................................................................................................	23	1	13.00	13	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	2	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAATT......................................................................................................................................................................................	24	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GATTAGTTCTCATCGATGCCG.............................................................................................................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................TAGTTCTCATCGATGCCG.............................................................................................................................................	18	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATA................................................................................................................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCT..............................................................................................................................................	22	1	10.00	10	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	2	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGA...............................................................................................................................................	22	1	9.00	9	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGTTCTCATCGATGCCG.............................................................................................................................................	19	1	9.00	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCAA.............................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAATC......................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTAGTTCTCATCGATGCCG.............................................................................................................................................	20	1	7.00	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT...............................................................................................................................................	21	1	7.00	7	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCC.........................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTT.............................................................................................................................................	24	1	7.00	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATC......................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCGA............................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCA.............................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGA............................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATGTC-...................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGA..................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGC............................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATT......................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GT---TC--TTTGG---TGCAGCCCCTCG..............................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCC..........................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTCT..........................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCTC.............................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTCC..........................................................................................................................................	26	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAC........................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTCC............................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATGA.....................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATTGATGATAGCATCTCCAAT.......................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAAA.......................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTC.............................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CGT---TC--TTTGG---TGCAGCCCCTCG..............................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATTGATGATAGCATCTCCA.........................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CGCGATTGATGATAGCATCTCCA.........................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTCT............................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCGCGATTGATGATAGCATCTCC..........................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCT............................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCA..............................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCAATTT.....................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATCT...............................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATC................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GATTAGTTCTCATCGATGCCGA............................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATAA...............................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTGATGATAGCATCTCCAATG......................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAATCT.....................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTTC.............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTAGTTCTCATCGATGCCGAT...........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTTGG---TGCAGCCCCTCGCG............................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATTT...............................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCCT............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTT...........................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCGT............................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCC..............................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCGCGATTGATGATAGCATCT............................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTT..............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................C--TTTGG---TGCAGCCCCTCG..............................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTGATGATAGCATCTCCAAT.......................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAATGA.....................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATTGATGATAGCATCTCCAA........................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................C--TTTGG---TGCAGCCCCTCGCG............................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGTTCTCATCGATGCCT.............................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATTGATGATAGCATCTCCC.........................................................................................................................................................................................	19	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTGATGATAGCATCTCCAA........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGATAGCATCTCCAAAT......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCGCGATTGATGATAGCATCTCCA.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GATTGATGATAGCATCTCCAATT......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGATGATAGCATCTCCAA........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CACATAGCCGCAATCA----------AA---------------------------CAACTGGC-----CCAAAGT-----------GTTATCGTTATCGTTATCG------CTAGCGAC-------------------------------GCTT------CGGG---TGCAGCCCCTCGCGATTGATGAAAGCATCTCCAATGAG-TA-----TTTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATC-----AGCAACAACAACAA-CATG-------------AGTTAAA-------------------------------------------------------CGAAATGAACC-AG--TTCGTT----GTTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCG.............................................................................................................................................	23	1	315.00	315	16	0	1	0	1	297
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT...............................................................................................................................................	22	1	194.00	194	8	1	2	2	1	180
.....................................................................................................................................................................................ATTGATGAAAGCATCTCCAATG......................................................................................................................................................................................	22	1	100.00	100	8	0	1	0	0	91
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG................................................................................................................................................	21	1	60.00	60	1	0	0	0	0	59
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTC..............................................................................................................................................	23	1	40.00	40	1	0	0	1	0	38
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTC..............................................................................................................................................	22	1	14.00	14	0	0	0	0	0	14
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT...............................................................................................................................................	21	1	11.00	11	1	0	1	0	0	9
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTT..............................................................................................................................................	23	1	10.00	10	0	0	0	0	0	10
.....................................................................................................................................................................................ATTGATGAAAGCATCTCCAATGT.....................................................................................................................................................................................	23	1	10.00	10	0	0	0	1	0	9
..............................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCGTC...........................................................................................................................................	24	1	9.00	9	0	0	0	0	0	9
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCT.............................................................................................................................................	24	1	7.00	7	0	0	0	0	0	7
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT.................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	6
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTC.............................................................................................................................................	24	1	5.00	5	0	0	0	0	0	5
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGTC...........................................................................................................................................	25	1	4.00	4	0	0	0	0	0	4
..............................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCG.............................................................................................................................................	22	1	4.00	4	3	0	0	0	0	1
...................................................................................................................................................................................CGATTGATGAAAGCATCTCCAAT.......................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGC............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGT............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTT.............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................ATTGATGAAAGCATCTCCAATGA.....................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC...............................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATG................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCG.............................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................ATTGATGAAAGCATCTCCAATGTC-...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................ATTGATGAAAGCATCTCCAATT......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................ATTAGTTCTCATCGATGTCG.............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTA..............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTTC............................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................CGATTGATGAAAGCATCTCC..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTC..............................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTCC............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCT.............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCA.............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCTC............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................TTGATGAAAGCATCTCCAATG......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCC.............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

dse_168

scaffold_8:1735259-1735320 +

Known Ortholog

Testes-restricted

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-44.1	-43.9	-43.6