ID:

dse_164

 Coordinate:

scaffold_1:3126070-3126132 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

Antisense to intron [Dsec\GM20587-in]; utr5 [utr5_plus_3644]; Antisense to pre_miRNA [Dsec\mir-307-RM]; Antisense to utr3 [utr3_minus_2591]; Antisense to miRNA [Dsec\miR-307-RA]

No Repeatable elements found

Sense Strand Reads

GTATTACACTGGTGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCGAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAATGCTGCTAACTTTGCATCGGTTTCACTTTTTGTCTA

***********************************.((((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V113

male body		 V115

head

 M054

female body

 V114

embryo
...........................................................................................TCACACCCAGGTTGAGTGAGT................................................... 21 0 1 6.00 6 1 4 1 0
..................................................TCACTCAAGGAGGTTGTGATGG........................................................................................... 22 0 1 3.00 3 2 0 1 0
...........................................................................................TCACACCCAGGTTGAGTGAGTC.................................................. 22 0 1 2.00 2 1 1 0 0
..........................................................................................ATTACACCCAGGTTGAGTGAGT................................................... 22 1 1 1.00 1 0 0 1 0
....................................................ACTCAAGGAGGTTGTGATGGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0
...........................................................................................TCACACCCAGGTTGAGCGAGT................................................... 21 1 1 1.00 1 0 0 0 1
...........................................................................................TCACACCCAGGTTGATTGAGT................................................... 21 1 1 1.00 1 1 0 0 0
.................................................CTCATTCAGGGAGGTAGTGA.............................................................................................. 20 3 4 0.50 2 1 1 0 0
.................................................CTAATTCAGGGAGGTTGTGA.............................................................................................. 20 3 2 0.50 1 1 0 0 0
.........................................................................................CATCACAGCCAGCTTGAG........................................................ 18 2 6 0.17 1 0 0 0 1
.................................................CTCATTCAGGGAGGTAGTG............................................................................................... 19 3 10 0.10 1 1 0 0 0
.........TGAAGCCAGTTACCTTCGT....................................................................................................................................... 19 3 19 0.05 1 0 0 0 1
.....................................................................TGGATGCCATATCGTAAAA........................................................................... 19 3 20 0.05 1 0 1 0 0
.............................................................................................................................AATGCTGCTAAGTTAGGAT................... 19 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

CATAATGTGACCACGGTCAATCGAAGCACCTATGAGACAGGACGATAGCGAGTGAGTTCCTCCAACACTACCTATGGTATAGCTTTATTGTAGTGTGGGTCCAACTCACTCAGTTTCGTTCTGTTTTACGACGATTGAAACGTAGCCAAAGTGAAAAACAGAT

************************************.((((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V115

head

 M054

female body

 V113

male body		 V114

embryo
................................................CGAGTGAGTTCCTCCAACACT.............................................................................................. 21 0 1 53140.00 53140 52112 284 504 240
...............................................GCGAGTGAGTTCCTCCAACACT.............................................................................................. 22 0 1 14574.00 14574 11496 1356 1279 443
..............................................AGCGAGTGAGTTCCTCCAACACT.............................................................................................. 23 0 1 7954.00 7954 3375 2016 930 1633
.................................................GAGTGAGTTCCTCCAACACT.............................................................................................. 20 0 1 5784.00 5784 5659 29 80 16
................................................CGAGTGAGTTCCTCCAACAC............................................................................................... 20 0 1 4001.00 4001 3866 44 79 12
...............................................GCGAGTGAGTTCCTCCAACAC............................................................................................... 21 0 1 2610.00 2610 2111 253 213 33
..............................................AGCGAGTGAGTTCCTCCAACAC............................................................................................... 22 0 1 2047.00 2047 1047 573 229 198
..............................................TGCGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 1679.00 1679 1529 44 103 3
..................................................AGTGAGTTCCTCCAACACT.............................................................................................. 19 0 1 898.00 898 888 4 1 5
................................................CGAGTGAGTTCCTCCAACA................................................................................................ 19 0 1 712.00 712 697 8 2 5
..............................................AGCGAGTGAGTTCCTCCAACA................................................................................................ 21 0 1 711.00 711 327 217 62 105
..............................................TGCGAGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 351.00 351 326 4 21 0
...............................................GCGAGTGAGTTCCTCCAACA................................................................................................ 20 0 1 335.00 335 260 41 30 4
.................................................GAGTGAGTTCCTCCAACAC............................................................................................... 19 0 1 280.00 280 276 3 0 1
..........................................................................................TAGTGTGGGTCCAACTCACTCA................................................... 22 0 1 226.00 226 14 199 1 12
.............................................................................................TGTGGGTCCAACTCACTCAG.................................................. 20 0 1 204.00 204 196 1 6 1
.............................................TAGCGAGTGAGTTCCTCCAACAC............................................................................................... 23 0 1 181.00 181 99 32 27 23
...............................................GCGAGTGAGTTCCTCCGACACT.............................................................................................. 22 1 1 167.00 167 158 4 3 2
................................................AGAGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 161.00 161 158 1 0 2
.............................................TAGCGAGTGAGTTCCTCCAACACT.............................................................................................. 24 0 1 152.00 152 72 39 24 17
...............................................GCGAGTGAGTTCCTCCGACAC............................................................................................... 21 1 1 122.00 122 119 0 3 0
.........................................................................................GTAGTGTGGGTCCAACTCACTCA................................................... 23 0 1 111.00 111 7 98 0 6
.............................................................................................TGTGGGTCCAACTCACTCA................................................... 19 0 1 102.00 102 95 5 0 2
...........................................................................................TGTGTGGGTCCAACTCACTCA................................................... 21 1 1 100.00 100 95 3 2 0
................................................CGAGTGAGTTCCTCAAACACT.............................................................................................. 21 1 1 99.00 99 98 1 0 0
..............................................CGCGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 99.00 99 88 1 8 2
...........................................................................................AGTGTGGGTCCAACTCACTCA................................................... 21 0 1 96.00 96 29 65 1 1
.............................................AAGCGAGTGAGTTCCTCCAACACT.............................................................................................. 24 1 1 95.00 95 55 15 11 14
...............................................GCGGGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 94.00 94 74 4 14 2
.............................................TTGCGAGTGAGTTCCTCCAACACT.............................................................................................. 24 1 1 83.00 83 76 0 7 0
................................................CGAGTGAGTTCCTACAACACT.............................................................................................. 21 1 1 82.00 82 81 0 0 1
................................................CAAGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 79.00 79 79 0 0 0
................................................CGGGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 75.00 75 73 0 2 0
................................................CGATTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 73.00 73 73 0 0 0
................................................CGAGTGAGTTCCTCCGACACT.............................................................................................. 21 1 1 71.00 71 69 0 1 1
................................................CCAGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 69.00 69 69 0 0 0
................................................CGAGTGAGTTCATCCAACACT.............................................................................................. 21 1 1 69.00 69 68 0 0 1
................................................CTAGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 68.00 68 66 1 1 0
................................................CGAGTGAGTTCCTCCAACGCT.............................................................................................. 21 1 1 65.00 65 61 0 3 1
................................................CGAATGAGTTCCTCCAACACT.............................................................................................. 21 1 1 63.00 63 61 0 2 0
................................................CGAGCGAGTTCCTCCAACACT.............................................................................................. 21 1 1 61.00 61 60 1 0 0
..............................................AGCGAGTGAGTTCCTCCGACACT.............................................................................................. 23 1 1 60.00 60 49 4 2 5
.................................................GAGTGAGTTCCTCCAACA................................................................................................ 18 0 1 60.00 60 59 1 0 0
................................................CGAGTGAGTTCCTCCAACAAT.............................................................................................. 21 1 1 58.00 58 58 0 0 0
................................................CGAGTGAGTTCCTCCAACACC.............................................................................................. 21 1 1 57.00 57 56 0 1 0
................................................CGAGTGGGTTCCTCCAACACT.............................................................................................. 21 1 1 56.00 56 56 0 0 0
................................................TGAGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 52.00 52 50 1 1 0
................................................CGAGTTAGTTCCTCCAACACT.............................................................................................. 21 1 1 52.00 52 52 0 0 0
................................................CGAGTGAGTTCCTCCAACACTC............................................................................................. 22 1 1 52.00 52 51 1 0 0
................................................CGACTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 50.00 50 47 1 2 0
................................................CGAGTGAGTTCCCCCAACACT.............................................................................................. 21 1 1 48.00 48 47 0 1 0
..............................................AGCGAGTGAGTTCCTCCGACAC............................................................................................... 22 1 1 47.00 47 41 1 4 1
...............................................ACGAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 46.00 46 43 0 2 1
................................................CGAGTGAGTTCCTCCAAAACT.............................................................................................. 21 1 1 46.00 46 44 2 0 0
..............................................TGCGAGTGAGTTCCTCCAACA................................................................................................ 21 1 1 45.00 45 41 2 1 1
.............................................AAGCGAGTGAGTTCCTCCAACAC............................................................................................... 23 1 1 45.00 45 28 13 3 1
................................................CGAGTGATTTCCTCCAACACT.............................................................................................. 21 1 1 44.00 44 44 0 0 0
................................................CGAGTGAGTTCCTCCAGCACT.............................................................................................. 21 1 1 44.00 44 43 0 0 1
..............................................AGCGGGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 42.00 42 28 2 3 9
................................................CGAGTGAGTTCCTCCAACACA.............................................................................................. 21 1 1 41.00 41 40 1 0 0
................................................CGAGTGAGCTCCTCCAACACT.............................................................................................. 21 1 1 41.00 41 40 0 1 0
................................................CGAGTGAGTCCCTCCAACACT.............................................................................................. 21 1 1 39.00 39 37 0 2 0
............................................................................................GTGTGGGTCCAACTCACTCA................................................... 20 0 1 38.00 38 5 32 1 0
................................................CGAGTGAGTTACTCCAACACT.............................................................................................. 21 1 1 37.00 37 37 0 0 0
................................................CGAGTGAGTTCCTCCAACTCT.............................................................................................. 21 1 1 32.00 32 32 0 0 0
............................................AAAGCGAGTGAGTTCCTCCAACACT.............................................................................................. 25 1 1 31.00 31 25 1 4 1
.............................................TAGCGAGTGAGTTCCTCCAACA................................................................................................ 22 0 1 31.00 31 14 9 1 7
................................................CGAGTGAGTTCCTCCAACATT.............................................................................................. 21 1 1 31.00 31 30 0 0 1
..............................................GGCGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 29.00 29 17 6 1 5
................................................CGAGTGAGTTCCACCAACACT.............................................................................................. 21 1 1 29.00 29 29 0 0 0
................................................CGAGTGAATTCCTCCAACACT.............................................................................................. 21 1 1 27.00 27 27 0 0 0
...............................................GCGAGTGAGTTCCTCAAACACT.............................................................................................. 22 1 1 27.00 27 23 4 0 0
...............................................GCGAGTGAGTTCCTACAACACT.............................................................................................. 22 1 1 27.00 27 25 1 1 0
................................................CGAGTGAGTTCCTCCAACACG.............................................................................................. 21 1 1 26.00 26 26 0 0 0
................................................CGAGTGAGTTTCTCCAACACT.............................................................................................. 21 1 1 25.00 25 25 0 0 0
................................................CGAGTCAGTTCCTCCAACACT.............................................................................................. 21 1 1 25.00 25 24 0 1 0
................................................CGAGTGAGTTCCTCCAATACT.............................................................................................. 21 1 1 24.00 24 24 0 0 0
...............................................GCGAGTGAGTTCCCCCAACACT.............................................................................................. 22 1 1 24.00 24 20 1 3 0
................................................CGAGTAAGTTCCTCCAACACT.............................................................................................. 21 1 1 23.00 23 23 0 0 0
..................................................AGTGAGTTCCTCCAACAC............................................................................................... 18 0 1 23.00 23 23 0 0 0
................................................CGCGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 23.00 23 17 0 6 0
...............................................GCGCGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 23.00 23 6 0 15 2
................................................CGAGTGAGTTCCTCTAACACT.............................................................................................. 21 1 1 22.00 22 22 0 0 0
...............................................TCGAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 22.00 22 20 1 1 0
...............................................GCGAGTGAGTTCCTCCAGCACT.............................................................................................. 22 1 1 21.00 21 15 1 4 1
................................................CGAGTGAGTTCCTTCAACACT.............................................................................................. 21 1 1 20.00 20 20 0 0 0
................................................CGAGTGAGTTCTTCCAACACT.............................................................................................. 21 1 1 19.00 19 19 0 0 0
...............................................GCGAATGAGTTCCTCCAACACT.............................................................................................. 22 1 1 19.00 19 17 1 1 0
...............................................GCCAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 18.00 18 11 4 3 0
................................................CGAGTGAGTTCCTCCGACAC............................................................................................... 20 1 1 18.00 18 17 1 0 0
...............................................GCGAGCGAGTTCCTCCAACACT.............................................................................................. 22 1 1 17.00 17 10 1 3 3
...........................................................................................AGTGTGGGTCCAACTCACTCAG.................................................. 22 0 1 17.00 17 6 8 0 3
...............................................GCTAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 17.00 17 14 3 0 0
...............................................GCGAGTGAGTTACTCCAACACT.............................................................................................. 22 1 1 16.00 16 12 3 1 0
...............................................GCGAGTGAGTTCCTCCAACGCT.............................................................................................. 22 1 1 16.00 16 13 2 1 0
...............................................GCGATTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 16.00 16 11 4 0 1
.................................................GAGTGAGTTCCTACAACACT.............................................................................................. 20 1 1 16.00 16 16 0 0 0
................................................CGAGTGACTTCCTCCAACACT.............................................................................................. 21 1 1 16.00 16 16 0 0 0
................................................CGAGTGAGTTCCTCCCACACT.............................................................................................. 21 1 1 15.00 15 15 0 0 0
...............................................GCGAGTGAGTTCCTCCGACA................................................................................................ 20 1 1 15.00 15 15 0 0 0
..............................................AGTGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 15.00 15 2 3 1 9
..............................................CGCGAGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 15.00 15 13 1 1 0
...............................................CCGAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 15.00 15 13 1 1 0
..............................................AGCGAGTGAGTTCCTCCAGCACT.............................................................................................. 23 1 1 14.00 14 8 2 1 3
...............................................GCGAGTGGGTTCCTCCAACACT.............................................................................................. 22 1 1 14.00 14 11 0 3 0
..............................................AGCGAGTGAGTTCCTCAAACACT.............................................................................................. 23 1 1 14.00 14 5 9 0 0
...............................................GCAAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 14.00 14 13 0 0 1
...............................................GCGTGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 14.00 14 6 0 8 0
..............................................AGCGAGTGAGTTCCTCCAAAACT.............................................................................................. 23 1 1 13.00 13 2 10 1 0
...............................................GCGAGGGAGTTCCTCCAACACT.............................................................................................. 22 1 1 13.00 13 1 12 0 0
................................................CGAGTGCGTTCCTCCAACACT.............................................................................................. 21 1 1 13.00 13 13 0 0 0
...............................................GCGACTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 13.00 13 12 0 1 0
.................................................GAGTGAGTTCCTCCGACACT.............................................................................................. 20 1 1 13.00 13 13 0 0 0
................................................CGAGTGAGTTCCTCCACCACT.............................................................................................. 21 1 1 13.00 13 13 0 0 0
..............................................AGCGACTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 12.00 12 7 3 1 1
..............................................AGCGAGTGAGTTCCTCCAAC................................................................................................. 20 0 1 12.00 12 1 11 0 0
..............................................AGCGCGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 12.00 12 4 0 8 0
..........................................................................................TAGTGTGGGTCCAACTCACTC.................................................... 21 0 1 12.00 12 0 12 0 0
...............................................GCGAGTGAGTTCATCCAACACT.............................................................................................. 22 1 1 12.00 12 12 0 0 0
...............................................GCGAGTGAGTTCCTCCAAAACT.............................................................................................. 22 1 1 12.00 12 6 6 0 0
..............................................AGCGATTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 12.00 12 3 6 1 2
..............................................AGCGAGTGAGTTCCTACAACACT.............................................................................................. 23 1 1 12.00 12 8 4 0 0
...............................................GCGAGTTAGTTCCTCCAACACT.............................................................................................. 22 1 1 11.00 11 11 0 0 0
................................................CGACTGAGTTCCTCCAACAC............................................................................................... 20 1 1 11.00 11 10 0 0 1
................................................CAAGTGAGTTCCTCCAACAC............................................................................................... 20 1 1 11.00 11 9 0 2 0
...............................................GCGAGTGAGTTCCTCCAACACC.............................................................................................. 22 1 1 11.00 11 10 0 1 0
...............................................GCGAGTGAGTTCCTCCAACAAT.............................................................................................. 22 1 1 11.00 11 10 1 0 0
.............................................TTGCGAGTGAGTTCCTCCAACAC............................................................................................... 23 1 1 11.00 11 10 0 1 0
...............................................GAGAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 11.00 11 10 1 0 0
...............................................GCGAGTGAGTTCCTCCAACACG.............................................................................................. 22 1 1 11.00 11 9 2 0 0
.........................................................................................TTAGTGTGGGTCCAACTCACTCA................................................... 23 1 1 11.00 11 1 10 0 0
................................................CGAGTGAGTTCCTACAACAC............................................................................................... 20 1 1 11.00 11 11 0 0 0
..............................................AGCGAGTGAGTTACTCCAACACT.............................................................................................. 23 1 1 10.00 10 2 5 0 3
................................................CGAGAGAGTTCCTCCAACACT.............................................................................................. 21 1 1 10.00 10 9 0 0 1
...............................................GCGAGTGATTTCCTCCAACACT.............................................................................................. 22 1 1 10.00 10 7 2 1 0
..............................................AGCGAGTGAGTTCCTCCAACTCT.............................................................................................. 23 1 1 10.00 10 5 0 0 5
.................................................GAGTGAGTTCCTCAAACACT.............................................................................................. 20 1 1 10.00 10 9 1 0 0
...............................................GCGAGTGAGCTCCTCCAACACT.............................................................................................. 22 1 1 10.00 10 9 0 1 0
...............................................GCGGGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 10.00 10 9 1 0 0
.................................................GAGTGAGTTCATCCAACACT.............................................................................................. 20 1 1 10.00 10 10 0 0 0
................................................CGAGTGTGTTCCTCCAACACT.............................................................................................. 21 1 1 10.00 10 9 0 1 0
...............................................GGGAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 9.00 9 0 9 0 0
.................................................GAGTGAGTTCCTCCAACACA.............................................................................................. 20 1 1 9.00 9 9 0 0 0
...............................................GCGAGTGAGTTCCTCCAACACTC............................................................................................. 23 1 1 9.00 9 6 1 0 2
..............................................AGCGAATGAGTTCCTCCAACACT.............................................................................................. 23 1 1 9.00 9 4 5 0 0
.................................................AAGTGAGTTCCTCCAACACT.............................................................................................. 20 1 1 9.00 9 9 0 0 0
...............................................GCGAGTGAGTTCCTCCAACATT.............................................................................................. 22 1 1 9.00 9 5 3 0 1
..............................................AGCGAGTGGGTTCCTCCAACACT.............................................................................................. 23 1 1 9.00 9 7 1 0 1
.................................................GAGTGATTTCCTCCAACACT.............................................................................................. 20 1 1 9.00 9 9 0 0 0
..............................................AGCGAGTGAGTTCCTCCAACACTG............................................................................................. 24 1 1 9.00 9 0 9 0 0
...................................................................CTACCTATGGTATAGCTTTATTGT........................................................................ 24 0 1 9.00 9 5 1 0 3
................................................CGAGGGAGTTCCTCCAACACT.............................................................................................. 21 1 1 9.00 9 7 1 1 0
................................................GGAGTGAGTTCCTCCAACACT.............................................................................................. 21 1 1 9.00 9 8 1 0 0
..............................................AGCGAGCGAGTTCCTCCAACACT.............................................................................................. 23 1 1 9.00 9 5 1 1 2
..............................................ATCGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 9.00 9 6 1 0 2
................................................CGAGTGAGTTCCTCCTACACT.............................................................................................. 21 1 1 9.00 9 9 0 0 0
..............................................AGCGAGTGAGTTCCTCCAACGCT.............................................................................................. 23 1 1 9.00 9 6 2 0 1
..............................................AGCGAGTGAGTTCCTCCGACA................................................................................................ 21 1 1 9.00 9 9 0 0 0
...............................................GCGAGTGAGTTCTTCCAACACT.............................................................................................. 22 1 1 8.00 8 5 0 1 2
..............................................AGCGAGTGAGTTCCTCCAACACA.............................................................................................. 23 1 1 8.00 8 3 4 0 1
..............................................AGGGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 8.00 8 0 8 0 0
................................................CGAGTGAGTTCCTCCAACAA............................................................................................... 20 1 1 8.00 8 8 0 0 0
................................................AGAGTGAGTTCCTCCAACAC............................................................................................... 20 1 1 8.00 8 8 0 0 0
................................................CCAGTGAGTTCCTCCAACAC............................................................................................... 20 1 1 8.00 8 7 0 1 0
...............................................GCGAGTGAGTTCCTCCAACACA.............................................................................................. 22 1 1 8.00 8 6 2 0 0
...............................................GCGAGTGAGTTCCTTCAACACT.............................................................................................. 22 1 1 8.00 8 5 2 0 1
.........................................................................................GTAGTGTGGGTCCAACTC........................................................ 18 0 1 8.00 8 6 2 0 0
...............................................GCGAGTGAGTTCCTCCAGCAC............................................................................................... 21 1 1 8.00 8 8 0 0 0
..............................................AGCGTGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 8.00 8 0 0 8 0
..............................................AGCGAGTGAGTTCTTCCAACACT.............................................................................................. 23 1 1 8.00 8 0 1 0 7
...............................................GCGAGTGCGTTCCTCCAACACT.............................................................................................. 22 1 1 8.00 8 6 0 1 1
..............................................AGCGGGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 8.00 8 6 0 1 1
..............................................AGCGAGTGAGTCCCTCCAACACT.............................................................................................. 23 1 1 8.00 8 1 2 1 4
.............................................AAGCGAGTGAGTTCCTCCAACA................................................................................................ 22 1 1 8.00 8 5 3 0 0
...............................................GCGAGTGAGTTCCTCCAATACT.............................................................................................. 22 1 1 8.00 8 8 0 0 0
..............................................AGCGAGTGAGTTCCTACAACAC............................................................................................... 22 1 1 8.00 8 2 6 0 0
.................................................GAGTGAGTTCCTCCAACAAT.............................................................................................. 20 1 1 8.00 8 8 0 0 0
.................................................GAGTGGGTTCCTCCAACACT.............................................................................................. 20 1 1 7.00 7 7 0 0 0
................................................CGAGTGAGTTCCTCAAACAC............................................................................................... 20 1 1 7.00 7 7 0 0 0
..............................................AGCCAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 7.00 7 4 1 1 1
..............................................GGCGAGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 7.00 7 6 1 0 0
.................................................GAGTGAGTTCCTCCAAAACT.............................................................................................. 20 1 1 7.00 7 7 0 0 0
...............................................GCGAGTCAGTTCCTCCAACACT.............................................................................................. 22 1 1 7.00 7 5 0 1 1
...............................................GCGAGTGAGTCCCTCCAACACT.............................................................................................. 22 1 1 7.00 7 7 0 0 0
.................................................GCGTGAGTTCCTCCAACACT.............................................................................................. 20 1 1 7.00 7 7 0 0 0
..........................................................................................TAGTGTGGGTCCAACTCATTCA................................................... 22 1 1 7.00 7 0 0 0 7
.................................................GAGTCAGTTCCTCCAACACT.............................................................................................. 20 1 1 7.00 7 7 0 0 0
............................................AAAGCGAGTGAGTTCCTCCAACAC............................................................................................... 24 1 1 7.00 7 6 1 0 0
..............................................AGCGAGGGAGTTCCTCCAACACT.............................................................................................. 23 1 1 7.00 7 0 7 0 0
................................................CGAGTGAGTTCAACCAACACT.............................................................................................. 21 2 1 7.00 7 7 0 0 0
..............................................AGCGAGTGATTTCCTCCAACACT.............................................................................................. 23 1 1 7.00 7 4 3 0 0
..............................................AGCGAGTGAGTTCCTCCAACACC.............................................................................................. 23 1 1 7.00 7 5 0 0 2
............................................TTAGCGAGTGAGTTCCTCCAACAC............................................................................................... 24 1 1 7.00 7 6 0 1 0
................................................CGAGTGAGTTAATCCAACACT.............................................................................................. 21 2 1 7.00 7 7 0 0 0
..............................................AGCGAGTGAGTTCATCCAACACT.............................................................................................. 23 1 1 7.00 7 5 0 0 2
.................................................GAGTGAGTTACTCCAACACT.............................................................................................. 20 1 1 7.00 7 7 0 0 0
.................................................GAGTTAGTTCCTCCAACACT.............................................................................................. 20 1 1 7.00 7 7 0 0 0
.............................................GAGCGAGTGAGTTCCTCCAACACT.............................................................................................. 24 1 1 7.00 7 6 1 0 0
...............................................GCGAGTGAGTTCCTCCAAC................................................................................................. 19 0 1 7.00 7 1 6 0 0
................................................CGAGTGAGTTCCTCCAACGC............................................................................................... 20 1 1 6.00 6 6 0 0 0
................................................CTAGTGAGTTCCTCCAACAC............................................................................................... 20 1 1 6.00 6 5 0 1 0
................................................CGAGTGAGTTCCTAAAACACT.............................................................................................. 21 2 1 6.00 6 6 0 0 0
................................................CGAGTGAGTTCCTCCAACT................................................................................................ 19 1 1 6.00 6 6 0 0 0
............................................TTAGCGAGTGAGTTCCTCCAACACT.............................................................................................. 25 1 1 6.00 6 6 0 0 0
...................................................GTGAGTTCCTCCAACACT.............................................................................................. 18 0 1 6.00 6 3 2 0 1
.................................................GAGTAAGTTCCTCCAACACT.............................................................................................. 20 1 1 6.00 6 6 0 0 0
................................................CGAGTGAGTTCCTGCAACACT.............................................................................................. 21 1 1 6.00 6 6 0 0 0
..............................................AGCGAGTGAGCTCCTCCAACACT.............................................................................................. 23 1 1 6.00 6 2 2 1 1
..............................................AGCGAGTGAGTTCCTCCAACAGT.............................................................................................. 23 1 1 6.00 6 0 6 0 0
..............................................AGCGAGTGAGTTCCCCCAACACT.............................................................................................. 23 1 1 6.00 6 2 1 1 2
................................................CGAGTGAGTTCCTCCAACCCT.............................................................................................. 21 1 1 6.00 6 6 0 0 0
...............................................GCGAGTGTGTTCCTCCAACACT.............................................................................................. 22 1 1 6.00 6 2 3 0 1
.................................................GAGTGAGTTCCTCCAACACTC............................................................................................. 21 1 1 6.00 6 6 0 0 0
..............................................AGCTAGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 6.00 6 4 2 0 0
..............................................AGCGAGTGAGTTCCTCCAACAAT.............................................................................................. 23 1 1 6.00 6 5 0 1 0
.............................................CAGCGAGTGAGTTCCTCCAACACT.............................................................................................. 24 1 1 6.00 6 2 1 1 2
..............................................TGCGGGTGAGTTCCTCCAACACT.............................................................................................. 23 2 1 6.00 6 5 0 1 0
...............................................GCGAGTGAGTTACTCCAACAC............................................................................................... 21 1 1 6.00 6 5 0 1 0
................................................CGAGTGAGTACCTCCAACACT.............................................................................................. 21 1 1 5.00 5 5 0 0 0
..............................................AGCGAGTGCGTTCCTCCAACAC............................................................................................... 22 1 1 5.00 5 4 0 0 1
...............................................GCGGGTGAGTTCCTCCGACACT.............................................................................................. 22 2 1 5.00 5 5 0 0 0
...............................................GCGAGTGAGTTCCTCAAACAC............................................................................................... 21 1 1 5.00 5 5 0 0 0
...............................................GCGAGTGAGTTCCTCCAACTCT.............................................................................................. 22 1 1 5.00 5 4 0 0 1
...............................................GCGCGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 5.00 5 3 2 0 0
................................................CGAGTGAGTTCGTCCAACACT.............................................................................................. 21 1 1 5.00 5 5 0 0 0
..............................................AGCGAGTGAGTTCCTCTAACACT.............................................................................................. 23 1 1 5.00 5 1 0 0 4
................................................TGAGTGAGTTCCTCCAACAC............................................................................................... 20 1 1 5.00 5 5 0 0 0
...............................................GCGAGTGAGTTCCACCAACACT.............................................................................................. 22 1 1 5.00 5 4 0 1 0
..........................................................................................TAGTGTGGGTCCAACTCGCTCA................................................... 22 1 1 5.00 5 3 0 2 0
...............................................GCAAGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 5.00 5 4 0 1 0
.................................................GAGTGAGTTCCTCCAGCACT.............................................................................................. 20 1 1 5.00 5 5 0 0 0
..............................................AGCGATTGAGTTCCTCCAACAC............................................................................................... 22 1 1 5.00 5 3 1 0 1
................................................CGAGTGAGTTCCTCCAGCAC............................................................................................... 20 1 1 5.00 5 4 0 1 0
...............................................GCGAGTGAGTTCCTACAACAC............................................................................................... 21 1 1 5.00 5 4 1 0 0
...............................................GCGAGCGAGTTCCTCCAACAC............................................................................................... 21 1 1 5.00 5 3 0 1 1
...............................................ACGAGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 5.00 5 4 0 1 0
..............................................AGCGCGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 5.00 5 1 4 0 0
.................................................GAGTGAGTTCCTCCAACGCT.............................................................................................. 20 1 1 5.00 5 5 0 0 0
..............................................AGCGAGTGAGTTCCTCCAGCAC............................................................................................... 22 1 1 5.00 5 4 0 0 1
...............................................TCGAGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 5.00 5 1 4 0 0
...................................................GCGAGTTCCTCCAACACT.............................................................................................. 18 1 1 5.00 5 2 3 0 0
................................................CGAGTGAGTTCCTCCAACAAA.............................................................................................. 21 2 1 5.00 5 5 0 0 0
................................................CGAGTGAGTTGCTCCAACACT.............................................................................................. 21 1 1 5.00 5 5 0 0 0
..............................................AGCGAGTGAGTTCCTCCAACATT.............................................................................................. 23 1 1 5.00 5 2 2 0 1
..............................................AGCTAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 5.00 5 4 1 0 0
...............................................GCGAGTGAGTTCCTCTAACACT.............................................................................................. 22 1 1 5.00 5 2 2 1 0
............................................................................................GTGTGGGTCCAACTCACTCAG.................................................. 21 0 1 5.00 5 1 3 1 0
...............................................GCGAGTGAGTTCAACCAACACT.............................................................................................. 22 2 1 5.00 5 5 0 0 0
...............................................GCGAGTGAGTTCCTCCCACACT.............................................................................................. 22 1 1 5.00 5 4 0 1 0
...............................................GCGAGTGAGTTCTTCCAACAC............................................................................................... 21 1 1 5.00 5 3 0 1 1
.................................................GAGTGAGTTCCTTCAACACT.............................................................................................. 20 1 1 5.00 5 5 0 0 0
..............................................AGCGAGTGTGTTCCTCCAACACT.............................................................................................. 23 1 1 5.00 5 0 2 0 3
................................................CGAGTGAGTTCACCCAACACT.............................................................................................. 21 2 1 4.00 4 4 0 0 0
................................................CGAGTGATTTCCTCCAACAC............................................................................................... 20 1 1 4.00 4 4 0 0 0
..............................................TGCGAGTGAGTTCATCCAACACT.............................................................................................. 23 2 1 4.00 4 4 0 0 0
............................................................................................TTGTGGGTCCAACTCACTCA................................................... 20 1 1 4.00 4 4 0 0 0
..............................................AGCGAGTGAGTTCCTCCAACACG.............................................................................................. 23 1 1 4.00 4 2 2 0 0
..................................................TGTGAGTTCCTCCAACACT.............................................................................................. 19 1 1 4.00 4 4 0 0 0
.................................................GAGTGAGCTCCTCCAACACT.............................................................................................. 20 1 1 4.00 4 4 0 0 0
..............................................AGCGAGTGATTTCCTCCAACAC............................................................................................... 22 1 1 4.00 4 2 2 0 0
.................................................GAGTGAGTTCCTCCAACTCT.............................................................................................. 20 1 1 4.00 4 4 0 0 0
.............................................TAGCGAGTGAGTTCCTCCAAC................................................................................................. 21 0 1 4.00 4 2 1 0 1
..............................................AGCGAGTGAGTTCCTCCACCAC............................................................................................... 22 1 1 4.00 4 0 4 0 0
..............................................AGAGAGTGAGTTCCTCCAACACT.............................................................................................. 23 1 1 4.00 4 3 1 0 0
...............................................GCGAGTTAGTTCCTCCAACAC............................................................................................... 21 1 1 4.00 4 2 2 0 0
...............................................GCGAGTGAGTTCCCCCAACAC............................................................................................... 21 1 1 4.00 4 3 1 0 0
...............................................GCGAGTGACTTCCTCCAACACT.............................................................................................. 22 1 1 4.00 4 4 0 0 0
................................................CGAGTGAGTTCCTCGAACACT.............................................................................................. 21 1 1 4.00 4 4 0 0 0
..............................................AGCGAGTTAGTTCCTCCAACACT.............................................................................................. 23 1 1 4.00 4 2 1 1 0
.................................................TAGTGAGTTCCTCCAACACT.............................................................................................. 20 1 1 4.00 4 4 0 0 0
................................................CGAGTGAGTTACTCCAACAC............................................................................................... 20 1 1 4.00 4 4 0 0 0
...............................................GCCAGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 4.00 4 3 0 1 0
..............................................AGCGAGAGAGTTCCTCCAACAC............................................................................................... 22 1 1 4.00 4 0 1 1 2
...............................................GCTAGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 4.00 4 2 1 1 0
.........................................................................................GTAGTGTGGGTCCAACTCGCTCA................................................... 23 1 1 4.00 4 3 1 0 0
.................................................GAGTGAGTTCCTCCAACACC.............................................................................................. 20 1 1 4.00 4 4 0 0 0
.................................................GACTGAGTTCCTCCAACACT.............................................................................................. 20 1 1 4.00 4 4 0 0 0
..............................................AGAGAGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 4.00 4 2 2 0 0
................................................CGGGTGAGTTCCTCCAACAC............................................................................................... 20 1 1 4.00 4 4 0 0 0
................................................CGAGTTAGTTCCTCCAACAC............................................................................................... 20 1 1 4.00 4 3 1 0 0
...............................................GTGAGTGAGTTCCTCCAACACT.............................................................................................. 22 1 1 4.00 4 3 0 0 1
..............................................AGCGAGTGAGTTCCTCCCACACT.............................................................................................. 23 1 1 4.00 4 2 0 0 2
..............................................AGCGAGCGAGTTCCTCCAACAC............................................................................................... 22 1 1 4.00 4 3 1 0 0
..............................................AGCGAGTGAGTTCCTCCAACT................................................................................................ 21 1 1 4.00 4 0 0 0 4
................................................CGAGTGAGTTCCTCCAAGACT.............................................................................................. 21 1 1 4.00 4 4 0 0 0
..............................................TACGAGTGAGTTCCTCCAACACT.............................................................................................. 23 2 1 4.00 4 4 0 0 0
................................................CGAGTGAGTTCATCCAACAC............................................................................................... 20 1 1 4.00 4 4 0 0 0
..............................................AGCGACTGAGTTCCTCCAACAC............................................................................................... 22 1 1 4.00 4 1 1 1 1
..............................................AGCGAGTGAGTTCCTCCAACACTC............................................................................................. 24 1 1 4.00 4 3 0 1 0
.............................................CAGCGAGTGAGTTCCTCCAACAC............................................................................................... 23 1 1 4.00 4 1 1 1 1
...............................................GCGAGTGAGTTCCTCCACCACT.............................................................................................. 22 1 1 4.00 4 4 0 0 0
..............................................AGCCAGTGAGTTCCTCCAACAC............................................................................................... 22 1 1 4.00 4 4 0 0 0
..............................................AGCGAGTGAGTTCCTCCAATACT.............................................................................................. 23 1 1 4.00 4 0 2 0 2
.................................................GAGTGAGTTCCTCCAACACG.............................................................................................. 20 1 1 4.00 4 4 0 0 0
...............................................CCGAGTGAGTTCCTCCAACAC............................................................................................... 21 1 1 4.00 4 4 0 0 0
.................................................GAGTGAGTTCCACCAACACT.............................................................................................. 20 1 1 4.00 4 4 0 0 0
..............................................AGCGAGTGAGTTCCTCCAACACTA............................................................................................. 24 0 1 4.00 4 0 4 0 0
..............................................AGCGAGTGAGTTCCTTCAACAC............................................................................................... 22 1 1 4.00 4 2 0 0 2
.................................................GAGTGAGTTCCTCCAACACTA............................................................................................. 21 0 1 4.00 4 3 1 0 0
..............................................AGCGAGTGAATTCCTCCAACACT.............................................................................................. 23 1 1 4.00 4 1 0 0 3
.................................................GAGTGACTTCCTCCAACACT.............................................................................................. 20 1 1 4.00 4 4 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1:3126020-3126182 + dse_164 candidate-rescued GTATTACA-----CTGGTGC-CAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TA
droSim2 2r:6294383-6294545 + dsi_151 candidate-rescued ATATTTCA-----CTGGTGC-CTGTTAGCTTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TTAC--------T-TTTT----------------------GTC------------TA
dm3 chr2R:5508720-5508882 + dme-mir-307b Known_mirbase GTATTTCA-----CTGGTGC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TA
droEre2 scaffold_4929:8848844-8849000 - der_247 candidate ATATTT------------TG-TAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGCT--------TCAC--------TTTTTT----------------------GTC------------TA
droYak3 2L:18140610-18140772 + ATAACTCA-----CTGGTGC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TA
droEug1 scf7180000409209:654034-654187 - ATT--T------------CC-AAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TA
droBia1 scf7180000301506:1211754-1211916 - ATATTTTT-----AACATGT-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-GGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TA
droTak1 scf7180000415866:192867-193029 - ATTCTTCA-----AATGTTC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGATGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TA
droEle1 scf7180000491107:1596280-1596441 - AAGTTTCA-----TACGTGT-CAGTTAGATTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-T-TT----------------------GTC------------TG
droRho1 scf7180000777217:399424-399584 + ATT--TCGA----TGGTTGC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATG-GGTT--------TCAC--------T-T-TT----------------------GTC------------TA
droFic1 scf7180000453858:1204343-1204491 - -----------------------GCTAGATCCGTGGGTACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCT-C--TAGCC--CC------GG--CACC-GATT--------TCAC--------T-TTTT------TTT-------------GTC------------TA
droKik1 scf7180000302476:911410-911575 + --------------TGTTGCACAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGGC--TAACT--CT-------G--TTCC-GGTT--------TCAC--------T-T-TG----------------------GCCTAAAACTCCCCCCA
droAna3 scaffold_13266:12795450-12795617 + dan_276 confident ATTTAACA-----T----TC-TAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCTGC--TAACT--TTCGTTTCGG---ATTGGGGT--------TCAC--------TGTTTT----------------------GTA------------AG
droBip1 scf7180000396730:1128092-1128247 - A----------------------GTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCGGC--TAACT--TTCGTTTC-G--GATTGGGGT--------CCAC--------TGTTTT----------------------GTC------------CG
dp5 3:14135666-14135860 + dps-mir-307b Known_mirbase GAAT--CACTATTCTTTTGT-C---CGGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACT--TT-------T--TCTC-AGTTTTCAGTTTTCAC--------T-TGTTCTTTTTTTTGCTTTTGTCCAGAGTC------------TA
droPer2 scaffold_4:1183007-1183201 - dpe_343 candidate GAAT--CACTATTCTGTTGT-CC---GGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACT--TT-------T--TCTC-AGTTTTCAGTTTTCAC--------T-TGTTCTTTTTTTTTCTTTTGTCCAGAGTC------------TA
droWil2 scf2_1100000004514:3433631-3433767 + GTAAT--A-----AATCTTT-CATTGAACTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATTATAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGGCAAAA-TG-TGT--TAAGT--T-------------------------------------------------------------------------------------
droVir3 scaffold_12875:5789437-5789579 + -----------------------GTTGGCTTAGTGGATACTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AACTAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTT----CGGTTT-ATT------TTGT-----------------CACTTTTGCACT-TTTT---------------------------------------
droMoj3 scaffold_6496:24271642-24271785 - ------------------------TTAGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCGAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TTCT----TAGTT--TTC------T--TGTT-GTTT--------TTAT--------T-TTTA----------------------TTT------------TT
droGri2 scaffold_15112:722923-723090 + TTATCGC------CTGTCGC-CTGTTT-TCTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTT----TAGTTCTTTTATTTTTA--TTTA-ATTT--------TTTC--------T-CTTT----------------------TTT------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GTATTACA-----CTGGTGC-CAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................2116.0061104
........................................................TCACTCAAGGAGGTTGTGATGG..............................................................................................................................................................2213.0031200
..................................................................................................TCACACCCAGGTTGAGTGAGTC....................................................................................................................2212.0020101
..........................................................ACTCAAGGAGGTTGTGATGGT.............................................................................................................................................................2111.0010100
droSim2
ATATTTCA-----CTGGTGC-CTGTTAGCTTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TTAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................TCACACCCAGGTTGAGTGAGTC....................................................................................................................2219.00931300000002000000
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................2112.00220000000000000000
..................................................................................................TCACACCCAGGTTGAGTGAGTCT...................................................................................................................2311.00100010000000000000
..................................................................AGGTTGTGATGGATC...........................................................................................................................................................1540.25100000000010000000
dm3
GTATTTCA-----CTGGTGC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................TCACACCCAGGTTGAGTGAGTC....................................................................................................................221893.008930000100000000000000000000010000000000000010000000000110001130000000000000000000000000000020840001700038000030010100000000000000000000000000000000001001000000000200000000100100000000000301240300000110330000000000000000117210000000040000000000210000011006001000012102030301200000000028130010300100600000414300000146730138002201415233310012720
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................211663.0066300000000000000000000000000100000000000000001000000000000000000000000000000000000000000100022002110000001000001000000200000000000000000000000100000000000000000000700000000030000000000010420090000401300000000000000000132100000000000200000000000000100040001100102070001100000002000170400233200013000003022000011533530211001141922112300002550
........................................................TCACTCAAGGAGGTTGTGATGG..............................................................................................................................................................221593.00593000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010310010100005000001000000001000000000000000000000000000000000000000000500000100000000000000000103302000020800000000000000041010000000000100000000000100000000160010000003010002000000100000137100031210203000001000020001465300410013161820245702132530
..................................................................................................TCACACCCAGGTTGAGTGAGTCC...................................................................................................................231205.0020500000000000000000000000000000000000010000000000010000000000000000000000000000010010000000150000100023620000011010060000000000000000000000000010000000000000000000000000000000000000000000020200000000000000000000000001110000010000000000000000000000002000010000000000000000000000058000001000002010000010000003311000100041300010000790
.......................................................CTCACTCAAGGAGGTTGTGATG...............................................................................................................................................................221153.0015300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000200000000000100000000000000400002010000000000000010001000000000000000000000000000000001000000003000040000101000000046100110000003001000000000002105301201014100010000540
........................................................TCACTCAAGGAGGTTGTGATG...............................................................................................................................................................211130.0013000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100002050000000000000020020000000000000000000000000100000001000000002002000000000000000039000110100001000000000000005100000000146400000111410
.................................................................................................ATCACACCCAGGTTGAGTGAGT.....................................................................................................................22166.006600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000110100001010000000000000000000000000000000000000000010000000000000000002100010100000000000019000000000000000000100000012000101000000100000001260
..................................................................................................TCACACCCAGGTTGAGTGAG......................................................................................................................20156.005600000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000020000000000000010000000000000000000000000010000001000000000000000000000000000000013000002100000000000000000001000000000012300100000220
..................................................................................................TCACACCCAGGTTGAGTGAGTT....................................................................................................................22152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000020220100000050000000000000000000000000000000000000000000000000000000000000000000000000000000016000000000000000000000000000000000000003100010001160
..................................................................................................TCACACCCAGGTTGAGTGAGTCA...................................................................................................................23125.0025000000000000000000000000000000000000000000000000000000003380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000001000000000070
........................................................TCACTCAAGGAGGTTGTGATGGT.............................................................................................................................................................23121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000001000000000010001000000130
..................................................................................................TCACACCCAGGTTGAGTGAGTCT...................................................................................................................23115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000300000000002000000000000000000000000000010000000070
.................................................................................................ATCACACCCAGGTTGAGTGAG......................................................................................................................21115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000300000000000000000001000000000000000001020100000060
..................................................................................................TCACACCCAGGTTGAGTGA.......................................................................................................................19112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000500000000000100000000000000000000000000100000000030
.......................................................CTCACTCAAGGAGGTTGTGAT................................................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................TCACACCCAGGTTGAGTGAGTA....................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000300000000000000000000000000000000000000010000000010
..................................................................................................TCACACCCAGGTTGAGTGAGTCAA..................................................................................................................2414.004000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................ATCACACCCAGGTTGAGTGA.......................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000020
..................................................................................................TCACACCCAGGTTGAGTGAGC.....................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000
....................................................................................................ACACCCAGGTTGAGTGAGTC....................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000
.......................................................CTCACTCAAGGAGGTTGTGA.................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000200000000000000000000000000000000000000000000000000
........................................................TCACTCAAGGAGGTTGTGATGGA.............................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000010000000000000000000
..................................................................................................TCACACCCAGGTTGAGTGAGA.....................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000
....................................................................................................ACACCCAGGTTGAGTGAGT.....................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................TCACTCAAGGAGGTTGTGATGC..............................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000
......................................................................................................ACCCAGGTTGAGTGAGTC....................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
...................................................................................................CACACCCAGGTTGAGTGAGTT....................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................ATCACACCCAGGTTGAGTGAGTT....................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................ACACCCAGGTTGAGTGAGTCT...................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................TCACTCAAGGAGGTTGTGATGGATC...........................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TCACACCCAGGTTGAGTGAGTAC...................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................ATCACACCCAGGTTGAGTGAGTC....................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ACACCCAGGTTGAGTGAGTCC...................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................TCACTCAAGGAGGTTGTGATGGAA............................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................CACACCCAGGTTGAGTGAGTCC...................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................CTCACTCAAGGAGGTTGTGATGA..............................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................ACTCAAGGAGGTTGTGATGG..............................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................TCACACCCAGGTTGAGTG........................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
droEre2
ATATTT------------TG-TAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGCT--------TCAC--------TTTTTT----------------------GTC------------TASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................TCACACCCAGGTTGAGTGAGTCT...................................................................................................................2311.0011000000
.......................................................CTCACTCAAGGAGGTTGTGATG...............................................................................................................................................................2211.0010000010
........................................................TCACTCAAGGAGGTTGTGATGG..............................................................................................................................................................2211.0010000010
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................2111.0010000010
droYak3
ATAACTCA-----CTGGTGC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................TCACACCCAGGTTGAGTGAGC.....................................................................................................................2111.00100100000000
droEug1
ATT--T------------CC-AAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotal
No Reads
droBia1
ATATTTTT-----AACATGT-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-GGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotal
No Reads
droTak1
ATTCTTCA-----AATGTTC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGATGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-TTTT----------------------GTC------------TASizeHit CountTotal NormTotal
No Reads
droEle1
AAGTTTCA-----TACGTGT-CAGTTAGATTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATC-GGTT--------TCAC--------T-T-TT----------------------GTC------------TGSizeHit CountTotal NormTotal
No Reads
droRho1
ATT--TCGA----TGGTTGC-CAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACT--TT-------G--CATG-GGTT--------TCAC--------T-T-TT----------------------GTC------------TASizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------GCTAGATCCGTGGGTACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCT-C--TAGCC--CC------GG--CACC-GATT--------TCAC--------T-TTTT------TTT-------------GTC------------TASizeHit CountTotal NormTotal
No Reads
droKik1
--------------TGTTGCACAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGGC--TAACT--CT-------G--TTCC-GGTT--------TCAC--------T-T-TG----------------------GCCTAAAACTCCCCCCASizeHit CountTotal NormTotal
No Reads
droAna3
ATTTAACA-----T----TC-TAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCTGC--TAACT--TTCGTTTCGG---ATTGGGGT--------TCAC--------TGTTTT----------------------GTA------------AGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................GCTCACTCAAGGAGGTTGTGA.................................................................................................................................................................21120.00202001215
..................................................................................................TCACACCCAGGTTGAGTGAGTC....................................................................................................................22119.0019200089
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................21116.00161000411
......................................................GCTCACTCAAGGAGGTTGTGATG...............................................................................................................................................................23112.00120000012
..................................................................................................TCACACCCAGGTTGAGTGAGTCA...................................................................................................................2317.007200221
..................................................................................................TCACACCCAGGTTGAGTGAG......................................................................................................................2016.006000042
......................................................GCTCACTCAAGGAGGTTGTG..................................................................................................................................................................2016.006100005
.......................................................CTCACTCAAGGAGGTTGTGATG...............................................................................................................................................................2215.005000005
......................................................GCTCACTCAAGGAGGTTGTGAT................................................................................................................................................................2214.004000022
....................................................................................................ACACCCAGGTTGAGTGAGTCA...................................................................................................................2113.003000003
........................................................TCACTCAAGGAGGTTGTGATGG..............................................................................................................................................................2212.002000020
...................................................................................................CACACCCAGGTTGAGTGAGTCT...................................................................................................................2212.002000020
...................................................................................................CACACCCAGGTTGAGTGAGTCA...................................................................................................................2212.002100100
........................................................TCACTCAAGGAGGTTGTGATGGT.............................................................................................................................................................2311.001000001
........................................................TCACTCAAGGAGGTTGTGATG...............................................................................................................................................................2111.001000001
...................................................................................................CACACCCAGGTTGAGTGAGTA....................................................................................................................2111.001000001
..................................................................................................TCACACCCAGGTTGAGTGAGTGT...................................................................................................................2311.001100000
......................................................GCTCACTCAAGGAGGTTGTGATGC..............................................................................................................................................................2411.001000001
..................................................................................................TCACACCCAGGTTGAGTGAGA.....................................................................................................................2111.001000001
....................................................................................................ACACCCAGGTTGAGTGAGT.....................................................................................................................1911.001000001
..................................................................................................TCACACCCAGGTTGAGTGAGC.....................................................................................................................2111.001000010
.......................................................CTCACTCAAGGAGGTTGTGATGG..............................................................................................................................................................2311.001000001
droBip1
A----------------------GTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCGGC--TAACT--TTCGTTTC-G--GATTGGGGT--------CCAC--------TGTTTT----------------------GTC------------CGSizeHit CountTotal NormTotal
No Reads
dp5
GAAT--CACTATTCTTTTGT-C---CGGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACT--TT-------T--TCTC-AGTTTTCAGTTTTCAC--------T-TGTTCTTTTTTTTGCTTTTGTCCAGAGTC------------TASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................TCACACCCAGGTTGAGTGAGTC....................................................................................................................2211.0010000010000
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................2111.0010100000000
droPer2
GAAT--CACTATTCTGTTGT-CC---GGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACT--TT-------T--TCTC-AGTTTTCAGTTTTCAC--------T-TGTTCTTTTTTTTTCTTTTGTCCAGAGTC------------TASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................ATCACACCCAGGTTGAGTGAG......................................................................................................................2111.001000010
........................................................TCACTCAAGGAGGTTGTGATG...............................................................................................................................................................2111.001000010
droWil2
GTAAT--A-----AATCTTT-CATTGAACTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATTATAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGGCAAAA-TG-TGT--TAAGT--T-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
-----------------------GTTGGCTTAGTGGATACTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AACTAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTT----CGGTTT-ATT------TTGT-----------------CACTTTTGCACT-TTTT---------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................TCACACCCAGGTTGAGTGAGT.....................................................................................................................2111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------------TTAGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCGAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TTCT----TAGTT--TTC------T--TGTT-GTTT--------TTAT--------T-TTTA----------------------TTT------------TTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
TTATCGC------CTGTCGC-CTGTTT-TCTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTT----TAGTTCTTTTATTTTTA--TTTA-ATTT--------TTTC--------T-CTTT----------------------TTT------------TTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 10:14 PM