ID:

dse_161

 Coordinate:

scaffold_28:99473-99540 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.5 -33.4 -33.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BARI1DNATcMar-Tc1+
BARI1DNATcMar-Tc1-
mature
star
  1. dse_336  scaffold_11:1680273-1680294 +
  2. dse_161  scaffold_28:99474-99495 -

Sense Strand Reads

CGGACACACGGACAGATGGACAGACGGACAGACGGATCGAGGTGGTCAAAAGTATTTACATGACGAGCTTTTTTTATTAGTTGACAATTGAAAAAAAGCACGTTGTGTAAATACTTTTGAAAAGGATCAATCTATTGTGGTAGGATGGATACGCAGAAGGCCCACTGT
***********************************...((.....((((((((((((((((((((.((((((((..((((((...)))))))))))))).))))))))))))))))))))......))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V115
head
 V114
embryo
 V113
male body
...............................................................................................................................................GATGGATACGAATAAGGC....... 18 2 8 77.75 622 559 33 30 0
..................................................AGTATTTACATGACGAGCTTTT................................................................................................ 22 0 1 5.00 5 3 1 0 1
...............................................................................................................................................GATGGATACGCATAAGGC....... 18 1 1 5.00 5 5 0 0 0
...............................................................................................AAGCACGTTGTGTAAATACTTT................................................... 22 0 2 3.50 7 0 1 6 0
...............................................................................................................................................GATGGATACGAATAAGGCCT..... 20 3 4 1.25 5 0 0 0 5
.....................................................ATTTACATGACGAGCTTTTTT.............................................................................................. 21 0 1 1.00 1 0 1 0 0
..............................................................................................AAAGCACGTTGTGTAAATACTT.................................................... 22 0 2 1.00 2 0 1 0 1
...............................................................................................................................................GATGGATACGCATAAGGCGT..... 20 3 4 0.75 3 2 0 0 1
...............................................................................................................................................GATGGATACGAATAAGGCGC..... 20 3 5 0.60 3 0 0 0 3
..............................................................................................................................................GGATGGATACGAATAAGGC....... 19 2 2 0.50 1 1 0 0 0
...............................................................................................AAGCACGTTGTGTAAATACTT.................................................... 21 0 2 0.50 1 0 0 0 1
..............................................................................................AAAGCACGTTGTGTAAATACT..................................................... 21 0 2 0.50 1 0 0 0 1
...............................................................................................AAGCACGTTGTGTAAATACTTTAA................................................. 24 2 2 0.50 1 1 0 0 0
...............................................................................................................................................GATGGATACGAAGAAGGC....... 18 1 2 0.50 1 1 0 0 0
...............................................................................................AAGCAAGTTGTGTAAATACTTA................................................... 22 2 3 0.33 1 0 0 1 0
.............................................................................................................................................GGGATGGATACGAATAAGGC....... 20 3 3 0.33 1 1 0 0 0
......................................................................................................................................................ACGCAGAAGGCCCCCTGT 18 1 6 0.17 1 1 0 0 0
.......................................................................................................................................TCTGGTGGGATGGATACGT.............. 19 3 9 0.11 1 1 0 0 0
..........................................................................................................................................GGTGGGATGGATACGTTGA........... 19 3 17 0.06 1 0 0 0 1

Anti-sense strand reads

GCCTGTGTGCCTGTCTACCTGTCTGCCTGTCTGCCTAGCTCCACCAGTTTTCATAAATGTACTGCTCGAAAAAAATAATCAACTGTTAACTTTTTTTCGTGCAACACATTTATGAAAACTTTTCCTAGTTAGATAACACCATCCTACCTATGCGTCTTCCGGGTGACA
************************************...((.....((((((((((((((((((((.((((((((..((((((...)))))))))))))).))))))))))))))))))))......))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
.................................................TTCATAAATGTACTGCTCGAAA................................................................................................. 22 0 1 1.00 1 1 0
......................CTGCCTGTCTGCCTAGCTCCACCAGTTT...................................................................................................................... 28 0 1 1.00 1 1 0
......................................CTCCACCAGTTTTCATAAATGTACTG........................................................................................................ 26 0 1 1.00 1 0 1
..............CTACCTGTCTGCCTGTCTGCCTAGCT................................................................................................................................ 26 0 1 1.00 1 0 1
...................................................................................TGTTAACTTTTTTTCGTGCAACACAT........................................................... 26 0 1 1.00 1 1 0
.........................................................................................................ACATTTAGGAAAACGTTTC............................................ 19 2 8 0.13 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_28:99423-99590 - dse_161 CGGACACACGGACAGATGGACAGACGGACAGACGGATCGA--------GG--------------------------------------------------TGGTCAAAAGTATTTA------------------------CATG--------------------ACG-----AGCTTTTTTTATTAGTTGACAATTG-----------------------------------------------------------------------AAA--AAAAGCACGTTGTGTAAAT-ACTTTTGAA-AA--------------------GGATCAATC----TATTGTGGTAGGATGGATACGCAGAAGGCCCACTGT
droSim2 2r:2007532-2007645 - CGGACA--------------------------------------------TAGCTAGATCGACT----------TG-------------ACTAGTGATGCTGATCAATAATATATA----T-ACTTTTTATGGTCGGAAG----GTGAAACAGGTTTCTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACTTTTAAA--C--------------------GAATCT----------------------AT-----------------TT
dm3 chrX:8468048-8468158 + ATG---------------TACATATGTATATATACACAGA--------GGTTGT--------------------------------------------------CAAAAATATTTA------------------------CACA--------------------ACGAGCTT---TTTTTCAATTAGTTGACAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTGTAAAT-ACTCTG------------------------------------------------------TAAA-----------------
droEre2 scaffold_4770:751275-751412 + CGGCCA--------------------------------------------TGGCCAGTTCGACT----------CG-------------GCTATTGATCCTGATTAAGAATATATGTATAT-ACTTTATATGTC-------------------------------------------------------AGCAAAAGAAAAGATGTTCATTG---TAATTGTATCAAAAATGATACATGGTTATTGAAGTTGTATTGATT---------------------------------------------------------------------------------------------TACA-----------------
droYak3 v2_chr2h_random_005:428481-428729 - CAGACAGACAGACGGACGGACAGACGGACA--------------------TGGTCAGATCGACT----------CG-------------GCTATTGATTCTGATCAAGAATATATA----T-ACTTTATATGGTCAGAAA----CTCTTAC----TTTTGCCTCTTACA------TAC-----------TGTAGTAGGATAGATACCCTTTAGGCCCACAGTACCATGTATGTATCA-------CGTAGTAGTTTAGGTTAACGGTCAGAA--ACGCTTACTTT-TGCCTCT------------------------------------------TACATACTGTAGTAGGATAGATACCCTTTAGGCCCACAGT
droEug1 scf7180000405716:69428-69528 - CGGACGGACGAACAGATGGACAGACGGAAAAACGGACAGACTGGCGGGCATGGCTAAATCGACT----------TG-------------GCTATTTGTCCTGATCATAAATAAAAA----C-ACATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droBia1 scf7180000301650:8098-8185 + CAGATAGACGGACAGACAGACAGACGGACAGACAGACGGA--------CATGGC-------------------------------------C-------------TTCTATATTAA------------------------AACGATGAATCTTGATC--------------------------TTACCTGAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droTak1 scf7180000413987:4551-4682 + CAGACAGACAGACAGACTGACAGACGGTCA--------------------TGGCTAGATCAACT----------CG-------------GCTCTTACTCTT-----------------------TTA-------------CTCT--------------------ACG-----AGTAAC-----------GGGTATAA--------------------------------------------------------TAAAGAGAACAGAAAAAA--AAGAGTACATT-TGTATAT-ACCTTCGGA-------------------------------A-------------------GGA-----------------A
droEle1 scf7180000490372:19938-20061 + CGTACAGACGGACGGACAGACGGACGGACAGACAGACGGA--------CTTGGCTAGATCAACT----------CT-------------TT---------------AAAAAACATCAGAAGAATTTGTTAT-TA-------------------------------------------------------AAAAATAG-----------------------------------------------------------------------AAA--AAAAACTCTT--TGTGAAT-AATTT-------------------------------------------------------CAAA-----------------
droRho1 scf7180000766100:11161-11326 - CAGACAGACGGACAGACAGACGGACAGACAGACGGACAGACAGACGGACAGGG-------------------------------------------------TTTAAAAATATATATATAT-AAA-TATATAATATAATA----ATAAAATAACTTCAT--ATATTACGTTA--------------------------------------------------------------------------------------------------------------------------TTTTTAAA-AAGGAGGGAGATGTAGTGTGTA---------TACATA-------------CA------GAGTACACACTGT
droFic1 scf7180000453824:788300-788358 + CGGACAGACGGACAGATGGACAGACGGACAGACGGACAGACGGACAGAC------------------------------------------------------------GTACATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------AT
droKik1 scf7180000302468:363765-363812 - CGGACAGACGGACAGACGGACAGACGGACAGACGGACAGATGGACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_8948:6933-7001 + CCGACAGACAGACAAACAGACAGACGGATAGACGGACTCA-------------------------------------------------GGAGGTGATCCTGATCAAGAATATATA----T-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396187:187-257 - CGTAGAAACAGACAGACGGACAGACGGATGGACGGACAGTCAGA----------------------------------------------------------------ATCATTTA------------------------TTTG--------------------ATC-----TGTTTTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
dp5 XR_group6:10325775-10325857 - CGGACGGACAGACGGACGGACAGACGGACGGACAGAACAA--------AA--------------------------------------------------TGTTGTAAATTGTGCA------------------------GTTG--------------------TCG-----AGTAGATTCTATTAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9921:362-504 - CGGACAGACGGACGGACGGACAGACGGACAGACAGACA------------TGGCTCAATCGACT----------CG-------------GCTATTGATGCTGATCAAGAATATATG----T-A-------------------AG--------------------ATT-----------------------------------------AATA---TTAAAGTATC-------------GTTTATTAATAATGTTTTGATC-------GAAA--AAGAGTACAA--------------------------------------------------A-------------------GT-----------------GT
droWil2 scf2_1100000004521:959814-959948 - CGGACAGACGGACGGACGGACAGACGGACGGACAGGTGCT------------------TCAATTTATGTCAATTTATCAAACCAACCAACC----------AA-CCGAAATATATA----T-GTTTTTTAT-TT-GAA--AACAATAAATTTGGTT---------------------------------------------------------------------------------------------------------------------------------TGGGTAT-------------------------------------------------------AGGATTGATA-----------------
droVir3 scaffold_12815:233352-233463 + CGGACAGACGGACAGATGGACAGACAGACGAA----------------AATGGCTAGATCGACTAATGGCAAATCG-------------GTATCGAC--------------ATAT---------TTATTGT--------------------------------------------------------TTGTTTATGT-----------------------------------------------------------------------TTA--TTG---------AGCAAAT-------------------------------------------------------TGGGTAAATA-----------------
droMoj3 scaffold_6540:4377926-4378080 - CGGACAGACGGACAGACGGACGGACGGACAGACGGACAGACGGACGGAC--AGCAAGACGGACA----------TT-------------GC---------------ACAAAACCAA------------------------TATA--------------------CTGATT-----CACTTTCGTGA-ATGAGTATAA-----------------------------------------------------------------------AAA--AAAAACATGCTGTTCAATAAATTTTTTAACTA--------------------TGATCAAAT-------------------GAT-----------------T
droGri2 scaffold_14906:12727162-12727217 - CGGACAAACGGACGGACGAACAGACGGACGAACAGACGGACTGG------------------------------------------------------------CAAGAATATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CGGACACACGGACAGATGGACAGACGGACAGACGGATCGA--------GG--------------------------------------------------TGGTCAAAAGTATTTA------------------------CATG--------------------ACG-----AGCTTTTTTTATTAGTTGACAATTG-----------------------------------------------------------------------AAA--AAAAGCACGTTGTGTAAAT-ACTTTTGAA-AA--------------------GGATCAATC----TATTGTGGTAGGATGGATACGCAGAAGGCCCACTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................AGTATTTA------------------------CATG--------------------ACG-----AGCTTTT...................................................................................................................................................................................................2215.0053101
...................................................................................................................................................................................................................................................................................AAGCACGTTGTGTAAAT-ACTTT............................................................................2223.5070061
...............................................................................................................ATTTA------------------------CATG--------------------ACG-----AGCTTTTTT.................................................................................................................................................................................................2111.0010001
..................................................................................................................................................................................................................................................................................AAAGCACGTTGTGTAAAT-ACTT.............................................................................2221.0020101
...................................................................................................................................................................................................................................................................................AAGCACGTTGTGTAAAT-ACTT.............................................................................2120.5010100
..................................................................................................................................................................................................................................................................................AAAGCACGTTGTGTAAAT-ACT..............................................................................2120.5010100
...................................................................................................................................................................................................................................................................................AAGCACGTTGTGTAAAT-ACTTTAA..........................................................................2420.5011000
droSim2
CGGACA--------------------------------------------TAGCTAGATCGACT----------TG-------------ACTAGTGATGCTGATCAATAATATATA----T-ACTTTTTATGGTCGGAAG----GTGAAACAGGTTTCTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACTTTTAAA--C--------------------GAATCT----------------------AT-----------------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCGGA............................................................................................................................................................................................................................................26136.0036000000024140070000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GTG...................................................................................................................................................................................................................................25117.0017000000120500000000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GTGA..................................................................................................................................................................................................................................2616.00600000040011000000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GT....................................................................................................................................................................................................................................2416.00600100010301000000
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCGG.............................................................................................................................................................................................................................................2515.00500000000020030000
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCGGAA...........................................................................................................................................................................................................................................2714.00400000001100020000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGGA............................................................................................................................................................................................................................................2473.1422000000212210050000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGGAA...........................................................................................................................................................................................................................................2572.4317000000130110101000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----G.....................................................................................................................................................................................................................................2312.00200000010100000000
........................................................GATCGACT----------TG-------------ACTAGTGATGCTGA...............................................................................................................................................................................................................................................................................2412.00200000000002000000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGGAAG----G.....................................................................................................................................................................................................................................2712.00200000002000000000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GTGAAAC...............................................................................................................................................................................................................................2912.00200000020000000000
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCGGAAG----......................................................................................................................................................................................................................................2812.00200000000000020000
.............................................................................................................................................................CTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACT..............................................................................16201.0521000000210000000000
................................................................................................................TATA----T-ACTTTTTATGGTCGGAAG----GTGA..................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GTGAA.................................................................................................................................................................................................................................2711.00100000000001000000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GTGAAA................................................................................................................................................................................................................................2811.00100000010000000000
..............................................................................................................................TTTATGGTCGGAAG----GTGAAACAGGTTT.........................................................................................................................................................................................................................2711.00100000001000000000
............................................................GACT----------TG-------------ACTAGTGATGCTGATC.............................................................................................................................................................................................................................................................................2211.00100000000001000000
....................................................GCTAGATCGACT----------TG-------------ACTAGTG......................................................................................................................................................................................................................................................................................2111.00100000000001000000
........................................................GATCGACT----------TG-------------ACTAGTGATGCTGT...............................................................................................................................................................................................................................................................................2411.00100000000001000000
........................................................GATCGACT----------TG-------------ACTAGTGATGCTGAT..............................................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................ATA----T-ACTTTTTATGGTCGGAAG----GTA...................................................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................TATA----T-ACTTTTTATGGTCGGAAG----G.....................................................................................................................................................................................................................................2411.00100000010000000000
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCGGAT...........................................................................................................................................................................................................................................2711.00100000000010000000
.................................................................................................TGCTGATCAATAATATATA----T-ACTT........................................................................................................................................................................................................................................................2411.00100000001000000000
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCG..............................................................................................................................................................................................................................................2411.00100000000000010000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGG.............................................................................................................................................................................................................................................2370.43300100011000000000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGGAT...........................................................................................................................................................................................................................................2580.38300000000000030000
...........................................................................................................................................................TTCTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACTTTTAAA--C--------------------GAA..............................................2830.33100000000100000000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGGAAT----......................................................................................................................................................................................................................................26100.30300000000000030000
..............................................................................................................................................................TGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACT..............................................................................15200.25500000030020000000
..............................................................................................................TATATA----T-ACTTTTTATGGTCGGA............................................................................................................................................................................................................................................2370.14100000001000000000
..........................................................................................................................................................TTTCTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACT..............................................................................19160.13200000001100000000
...........................................................................................................TAATATATA----T-ACTTTTTATGGTCGGAAA----......................................................................................................................................................................................................................................2880.13100000000000010000
.................................................................................................................ATA----T-ACTTTTTATGGTCGG.............................................................................................................................................................................................................................................1990.11100000010000000000
.............................................................................................................ATATATA----T-ACTTTTTATGGTCGT.............................................................................................................................................................................................................................................2390.11100000000001000000
............................................................................................................................................................TCTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACTTTTAA.........................................................................2290.11100000000000010000
...........................................................................................................................................................TTCTGCCTGT--------------------------------------------------------------------------------------------------------------------------TACAT-ACTTTTAAA--A--------------------.................................................25100.10100000010000000000
..........................................................................................................................ACTTTTTATGGTCGGAA...........................................................................................................................................................................................................................................17130.08100000000001000000
dm3
ATG---------------TACATATGTATATATACACAGA--------GGTTGT--------------------------------------------------CAAAAATATTTA------------------------CACA--------------------ACGAGCTT---TTTTTCAATTAGTTGACAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTGTAAAT-ACTCTG------------------------------------------------------TAAA-----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................AAAGCTCGTCGTGTAAAT-ACT..............................................................................21113.734100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150000000000000000000000000000000000000000002000000000000000000000001001000000001000000000000000000000000000000000100060000000001000000302000010020010000000000010001000110
............................................................................................................................................................................................TGACAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCG............................................................................................2351.2060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAAAAAGCTCGTCGTGTAAAT-.................................................................................21111.09120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000001200000000000000000000101000000000000000000000000010000200
................................................................................................................................................................................................................................................................................AAAAAGCTCGTCGTGTAAAT-A................................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000110
.........................................................................................................AAAAATATTTA------------------------CACA--------------------ACGAGCTT---TT.....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACATATGTATATATACACAGA--------GGTTGT--------------------------------------------------..............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GACAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCG............................................................................................2250.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAAAAAAGCTCGTCGTGTAAA...................................................................................21110.7380000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200010000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................AAAAAAAAGCTCGTCGTGTA.....................................................................................20110.6470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AAAAGCTCGTCGTGTAAAT-AC...............................................................................21110.6470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001100000000000000000000000000000000000000000000010000000000000001000100000000000000000001000000000000
.............................................................................................................................................................................................................................................................................AAAAAAAAGCTCGTCGTGTAA....................................................................................21110.5560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000001011000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAAAAAGCTCGTCGTGTAAA...................................................................................20110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001100010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAAAAAGCTCGTCGTGTAAAT-A................................................................................22110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AAAGCTCGTCGTGTAAAT-A................................................................................19110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AAAGCTCGTCGTGTAAAT-AC...............................................................................20110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................TG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTG.......................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TTG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTGTA.....................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTGTAA....................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................CAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTG.......................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................G-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGTGTA.....................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCGTCGT........................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AGTTGACAATTG-----------------------------------------------------------------------AAAAAAAAAGCTCG............................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AAAAGCTCGTCGTGTAAAT-A................................................................................20110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GCTCGTCGTGTAAAT-ACT..............................................................................18110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAAAAGCTCGTCGTGTAAAT-AC...............................................................................22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.............................................................................................................................................................................................................................................................................AAAAAAAAGCTCGTCGTGTAAAT-ACT..............................................................................26110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.................................................................................................................................................................................................................................................................................AAAAGCTCGTCGTGTAAAT-ACT..............................................................................22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AAAAAAAAGCTCGTCGTGTAAA...................................................................................22110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAAAAAGCTCGTCGTGTAAAT-AC...............................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAAAAAAGCTCGTCGTGTAAAT-A................................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAAAAGCTCGTCGTGTAAAT-ACT..............................................................................23110.0910000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AAGCTCGTCGTGTAAAT-ACT..............................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAAAAAGCTCGTCGTGTAAAT-ACT..............................................................................24110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAAAAAAGCTCGTCGTGTAA....................................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAAAAAAGCTCGTCGTGTAAAT-ACT..............................................................................25110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAAAAGCTCGTCGTGTAAAT-.................................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CTCGTCGTGTAAAT-ACGAC............................................................................19150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
CGGCCA--------------------------------------------TGGCCAGTTCGACT----------CG-------------GCTATTGATCCTGATTAAGAATATATGTATAT-ACTTTATATGTC-------------------------------------------------------AGCAAAAGAAAAGATGTTCATTG---TAATTGTATCAAAAATGATACATGGTTATTGAAGTTGTATTGATT---------------------------------------------------------------------------------------------TACA-----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CAGACAGACAGACGGACGGACAGACGGACA--------------------TGGTCAGATCGACT----------CG-------------GCTATTGATTCTGATCAAGAATATATA----T-ACTTTATATGGTCAGAAA----CTCTTAC----TTTTGCCTCTTACA------TAC-----------TGTAGTAGGATAGATACCCTTTAGGCCCACAGTACCATGTATGTATCA-------CGTAGTAGTTTAGGTTAACGGTCAGAA--ACGCTTACTTT-TGCCTCT------------------------------------------TACATACTGTAGTAGGATAGATACCCTTTAGGCCCACAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGCC..............................................................................................................................................................27209.051811789600020004
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGCC......27209.051811789600020004
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGG................................................................................................................................................................25202.2044038410010000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGG........25202.2044038410010000
...............................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCC..............................................................................................................................................................25202.05410113000000000
.......................................................................................................................................................................................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCC......25202.05410113000000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGC...............................................................................................................................................................26202.0040030810010000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGC.......26202.0040030810010000
......................................................................................................................................................................................................................................................................................................................................................GTAGTAGGATAGATACCCTTTAGGCC......26200.501006400000000
..............................................................................................................................................................................................GTAGTAGGATAGATACCCTTTAGGCC..............................................................................................................................................................26200.501006400000000
.......................................................................................................................................................................................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCCC.....26190.47901800000000
...............................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCCC.............................................................................................................................................................26190.47901800000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGCCC.............................................................................................................................................................28190.42803500000000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGCCC.....28190.42803500000000
...............................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCCCA............................................................................................................................................................27190.32604100010000
.......................................................................................................................................................................................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCCCA....27190.32604100010000
..........................................................................................................................................................................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCCACAG.27180.28503200000000
..................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCCACAG.........................................................................................................................................................27180.28503200000000
.......................................................................................................................................................................................................TAGATACCCTTTAGGCCCACAGTACCA....................................................................................................................................................27190.26505000000000
......................................................................................................................................................................................................................................................................................................................................................GTAGTAGGATAGATACCCTTTAGG........24200.25505000000000
..............................................................................................................................................................................................GTAGTAGGATAGATACCCTTTAGG................................................................................................................................................................24200.25505000000000
..........................................................................................................................................................................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCCACA..26190.21401300000000
..................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCCACA..........................................................................................................................................................26190.21401300000000
...........................................................................................................................................................................................................TACCCTTTAGGCCCACAGTACCATG..................................................................................................................................................25200.20404000000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAG.................................................................................................................................................................24200.20403100000000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAG.........24200.20403100000000
..............................................................................................................................................................................................GTAGTAGGATAGATACCCTTTAGGC...............................................................................................................................................................25200.15303000000000
......................................................................................................................................................................................................................................................................................................................................................GTAGTAGGATAGATACCCTTTAGGC.......25200.15303000000000
................................................................................................................................................................................................AGTAGGATAGATACCCTTTAGGCC..............................................................................................................................................................24200.15302100000000
........................................................................................................................................................................................................................................................................................................................................................AGTAGGATAGATACCCTTTAGGCC......24200.15302100000000
..........................................................................................................................................................................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCC.....23190.11200200000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGCCCA............................................................................................................................................................29190.11201100000000
..................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCC.............................................................................................................................................................23190.11200200000000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTAGGCCCA....29190.11201100000000
.....................AGACGGACA--------------------TGGTCAGATCGACT----------CG-------------.............................................................................................................................................................................................................................................................................................25200.10220000000000
.................................................................................................................................................................................................................TTAGGCCCACAGTACCATGTATGTATCA-------..................................................................................................................................28160.06101000000000
..................................................................................................................................................................................................................TAGGCCCACAGTACCATGTATGTATCA-------..................................................................................................................................27160.06101000000000
.............................................................................................................................................................................................................CCCTTTAGGCCCACAGTACCATGTATG..............................................................................................................................................27170.06101000000000
................................................................................................................................................................................................................TTTAGGCCCACAGTACCATGTATG..............................................................................................................................................24180.06101000000000
...........................................................................................................................................................................................................TACCCTTTAGGCCCACAGTACCATGTA................................................................................................................................................27180.06101000000000
..................................................................................................................................................................................................................TAGGCCCACAGTACCATGTATGTAT...........................................................................................................................................25180.06101000000000
.........................................................................................................................................................................................................................................................................................................................................................GTAGGATAGATACCCTTTAGGCCC.....24190.05101000000000
.......................................................................................................................................................................................................TAGATACCCTTTAGGCCCACAGTAC......................................................................................................................................................25190.05101000000000
................................................................................................................................................................................................AGTAGGATAGATACCCTTTAGGCCCAC...........................................................................................................................................................27190.05101000000000
.....................................................................................................................................................................................................GATAGATACCCTTTAGGCCCACAGTAC......................................................................................................................................................27190.05101000000000
.......................................................................................................................................................................................................TAGATACCCTTTAGGCCCACAGTACCATG..................................................................................................................................................29190.05101000000000
................................................................................................................................................................................................AGTAGGATAGATACCCTTTAGGCCCA............................................................................................................................................................26190.05100100000000
.................................................................................................................................................................................................GTAGGATAGATACCCTTTAGGCCC.............................................................................................................................................................24190.05101000000000
........................................................................................................................................................................................................................................................................................................................................................AGTAGGATAGATACCCTTTAGGCCCAC...27190.05101000000000
........................................................................................................................................................................................................................................................................................................................................................AGTAGGATAGATACCCTTTAGGCCCA....26190.05100100000000
.........................................................................................................................................................................................................................................................................................................................................................GTAGGATAGATACCCTTTAGGCCCAAT..27190.05100100000000
.......................................................................................................................................................................................................TAGATACCCTTTAGGCCCACAGTACC.....................................................................................................................................................26190.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCCAC...25190.05100100000000
........................................................................................................................................................................................................AGATACCCTTTAGGCCCACAGTACCA....................................................................................................................................................26190.05101000000000
.................................................................................................................................................................................................GTAGGATAGATACCCTTTAGGCCCAAT..........................................................................................................................................................27190.05100100000000
...............................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCCCATT..........................................................................................................................................................29190.05100100000000
..................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCCCAC...........................................................................................................................................................25190.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGCCCATT..29190.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACC...............18200.05100000100000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTT............21200.05101000000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCT.....................................................................................................................................................................20200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTA..........23200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCC......22200.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGC.......24200.05100100000000
...............................................................................................................................................................................................TAGTAGGATAGATACCCTTTAGGC...............................................................................................................................................................24200.05100100000000
.........................................................................................................................................................................................................GATACCCTTTAGGCCCACAGTACCATG..................................................................................................................................................27200.05101000000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTT....................................................................................................................................................................21200.05101000000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACC.......................................................................................................................................................................18200.05100000100000
..................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCC..............................................................................................................................................................22200.05100100000000
..............................................................................................................TATATA----T-ACTTTATATGGTCAGA............................................................................................................................................................................................................................................23200.05100000010000
.....................................................................................................................................................................................................................................................................................................................................................TGTAGTAGGATAGATACCCT.............20200.05101000000000
..........................................................................................................................................................................................................ATACCCTTTAGGCCCACAGTACCATG..................................................................................................................................................26200.05101000000000
...........................................................................................................................................................................................................TACCCTTTAGGCCCACAGTACCAT...................................................................................................................................................24200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCT......22200.05101000000000
.............................................................................................................................................................................................TGTAGTAGGATAGATACCCTTTA..................................................................................................................................................................23200.05101000000000
..................................................................................................................................................................................................TAGGATAGATACCCTTTAGGCT..............................................................................................................................................................22200.05101000000000
droEug1
CGGACGGACGAACAGATGGACAGACGGAAAAACGGACAGACTGGCGGGCATGGCTAAATCGACT----------TG-------------GCTATTTGTCCTGATCATAAATAAAAA----C-ACATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
CAGATAGACGGACAGACAGACAGACGGACAGACAGACGGA--------CATGGC-------------------------------------C-------------TTCTATATTAA------------------------AACGATGAATCTTGATC--------------------------TTACCTGAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
CAGACAGACAGACAGACTGACAGACGGTCA--------------------TGGCTAGATCAACT----------CG-------------GCTCTTACTCTT-----------------------TTA-------------CTCT--------------------ACG-----AGTAAC-----------GGGTATAA--------------------------------------------------------TAAAGAGAACAGAAAAAA--AAGAGTACATT-TGTATAT-ACCTTCGGA-------------------------------A-------------------GGA-----------------ASizeHit CountTotal NormTotal
No Reads
droEle1
CGTACAGACGGACGGACAGACGGACGGACAGACAGACGGA--------CTTGGCTAGATCAACT----------CT-------------TT---------------AAAAAACATCAGAAGAATTTGTTAT-TA-------------------------------------------------------AAAAATAG-----------------------------------------------------------------------AAA--AAAAACTCTT--TGTGAAT-AATTT-------------------------------------------------------CAAA-----------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGACAGACGGACAGACAGACGGACAGACAGACGGACAGACAGACGGACAGGG-------------------------------------------------TTTAAAAATATATATATAT-AAA-TATATAATATAATA----ATAAAATAACTTCAT--ATATTACGTTA--------------------------------------------------------------------------------------------------------------------------TTTTTAAA-AAGGAGGGAGATGTAGTGTGTA---------TACATA-------------CA------GAGTACACACTGTSizeHit CountTotal NormTotal
No Reads
droFic1
CGGACAGACGGACAGATGGACAGACGGACAGACGGACAGACGGACAGAC------------------------------------------------------------GTACATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------ATSizeHit CountTotal NormTotal
No Reads
droKik1
CGGACAGACGGACAGACGGACAGACGGACAGACGGACAGATGGACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCGACAGACAGACAAACAGACAGACGGATAGACGGACTCA-------------------------------------------------GGAGGTGATCCTGATCAAGAATATATA----T-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGTAGAAACAGACAGACGGACAGACGGATGGACGGACAGTCAGA----------------------------------------------------------------ATCATTTA------------------------TTTG--------------------ATC-----TGTTTTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dp5
CGGACGGACAGACGGACGGACAGACGGACGGACAGAACAA--------AA--------------------------------------------------TGTTGTAAATTGTGCA------------------------GTTG--------------------TCG-----AGTAGATTCTATTAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....CGGACAGACGGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................................................................23201.402800000002800
....CGGACAGACGGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................................................................24201.302600000002510
....CGGACAGACGGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................................................................25200.951900000001900
..GACGGACAGACGGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................................................................26200.651300000001300
...ACGGACAGACGGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................................................................26200.2550000000500
....CGGACAGACGGACGGACAGAC.............................................................................................................................................................................................................................................................................................................................................................21200.2040000000400
..........GACGGACGGACAGACGGACGGAC.....................................................................................................................................................................................................................................................................................................................................................23200.1530000000300
.GGACGGACAGACGGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................................................................27200.1020000000200
..GACGGACAGACGGACGGACAGACGA...........................................................................................................................................................................................................................................................................................................................................................25200.1020000000200
..GACGGACAGACGGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................................................................27200.1020000000020
.....GGACAGACGGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................................................................22200.1020000000200
....CGGACAGACGGACGGACAGACGGAA.........................................................................................................................................................................................................................................................................................................................................................25200.1020000000200
...ACGGACAGACGGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................................................................24200.1020000000200
.......ACAGACGGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................................................................20200.0510000000010
...............ACGGACAGACGGACGGACA....................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...ACGGACAGACGGACGGACAGACGGA..........................................................................................................................................................................................................................................................................................................................................................25200.0510000000100
.GGACGGACAGACGGACGGACAGACGGAC.........................................................................................................................................................................................................................................................................................................................................................28200.0510000000100
............CGGACGGACAGACGGACGGACAGA..................................................................................................................................................................................................................................................................................................................................................24200.0510000000010
...ACGGACAGACGGACGGACA................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
......GACAGACGGACGGACAGACGG...........................................................................................................................................................................................................................................................................................................................................................21200.0510000000100
droPer2
CGGACAGACGGACGGACGGACAGACGGACAGACAGACA------------TGGCTCAATCGACT----------CG-------------GCTATTGATGCTGATCAAGAATATATG----T-A-------------------AG--------------------ATT-----------------------------------------AATA---TTAAAGTATC-------------GTTTATTAATAATGTTTTGATC-------GAAA--AAGAGTACAA--------------------------------------------------A-------------------GT-----------------GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................TGTTTTGATC-------GAAA--AAGAGTACAA--------------------------------------------------A-------------------G....................26200.153020001
..............................................................................................................................................................................................................................................................TTGATC-------GAAA--AAGAGTACAA--------------------------------------------------A-------------------GT-----------------GT25200.051010000
..............................................................................................................................................................................................................................ATC-------------GTTTATTAATAATGTTTTGATC-------G..........................................................................................................26200.051000001
..........................................................................................................................................................................................................................................................TGTTTTGATC-------GAAA--AAGAGTAC.............................................................................................22200.051000001
........................................................................................................................................................................................................................................................AATGTTTTGATC-------GAAA--AAGA.................................................................................................20200.051100000
.........................................................................................................................................................................................................................................................ATGTTTTGATC-------GAAA--AAGAGTACAA--------------------------------------------------A-------------------G....................27200.051000001
droWil2
CGGACAGACGGACGGACGGACAGACGGACGGACAGGTGCT------------------TCAATTTATGTCAATTTATCAAACCAACCAACC----------AA-CCGAAATATATA----T-GTTTTTTAT-TT-GAA--AACAATAAATTTGGTT---------------------------------------------------------------------------------------------------------------------------------TGGGTAT-------------------------------------------------------AGGATTGATA-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............GACGGACAGACGGACGGACAGG..................................................................................................................................................................................................................................................................................................................................................2250.20110000
..................GACAGACGGACGGACAGG..................................................................................................................................................................................................................................................................................................................................................1870.14110000
...ACAGACGGACGGACGGACAGACG............................................................................................................................................................................................................................................................................................................................................................23200.05100100
..GACAGACGGACGGACGGACA................................................................................................................................................................................................................................................................................................................................................................20200.05100100
droVir3
CGGACAGACGGACAGATGGACAGACAGACGAA----------------AATGGCTAGATCGACTAATGGCAAATCG-------------GTATCGAC--------------ATAT---------TTATTGT--------------------------------------------------------TTGTTTATGT-----------------------------------------------------------------------TTA--TTG---------AGCAAAT-------------------------------------------------------TGGGTAAATA-----------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CGGACAGACGGACAGACGGACGGACGGACAGACGGACAGACGGACGGAC--AGCAAGACGGACA----------TT-------------GC---------------ACAAAACCAA------------------------TATA--------------------CTGATT-----CACTTTCGTGA-ATGAGTATAA-----------------------------------------------------------------------AAA--AAAAACATGCTGTTCAATAAATTTTTTAACTA--------------------TGATCAAAT-------------------GAT-----------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................TTCGTGA-ATGAGTATAA-----------------------------------------------------------------------AAA--AAAAACA..............................................................................................2750.201100000
...............................................................................................................ACCAA------------------------TATA--------------------CTGATT-----CACTTTCGTGA-...........................................................................................................................................................................................26200.153300000
............................................................................................................................................TATA--------------------CTGATT-----CACTTTCGT..............................................................................................................................................................................................19200.102020000
..........................................................CGGACA----------TT-------------GC---------------ACAAAACCA...................................................................................................................................................................................................................................................................19200.102200000
.......................ACGGACAGACGGACAGACGGACGG.......................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
CGGACAAACGGACGGACGAACAGACGGACGAACAGACGGACTGG------------------------------------------------------------CAAGAATATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 02:38 PM