dse_1522

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGTGTGCTGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTCGTCCTTGTTCCCCGGATCTCGGCCGTGGGTTGCTATCCTTTATGGAGCTTACATGGGGATTTGGTCGCTGATGAGGCGTCCTTTCTGTCCCCGTCGCTTCCCCGCACCAACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC ************************************************..(((((....(((.(((((((((.......))))))))))))(((((.........((.((((((.......))).)))..))..........)))))....((((((((..((.((((.....)))).)).....))))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	V114 embryo	M054 female body
.........................................................................................................................................................................TGATGAGGCGTCCTTTCTGTCCC...........................................................	23	0	1	1.00	1	1	0	0
...................................................................................................TAGTACTTGTTCCCCGGAT.....................................................................................................................................	19	2	4	0.25	1	0	1	0
.................................................................................................GTTCCTACTTGTTCCCCGG.......................................................................................................................................	19	3	15	0.07	1	0	0	1

TGCGCGGCTGGAAGTTGTACTTCGTGCCGCCGGAGTGGTAAAAGCCGTTCCATTCACACGACAATGTCGACTAAATTACGATTAATCAACTTGCGAGGAAGCAGGAACAAGGGGCCTAGAGCCGGCACCCAACGATAGGAAATACCTCGAATGTACCCCTAAACCAGCGACTACTCCGCAGGAAAGACAGGGGCAGCGAAGGGGCGTGGTTGAAATAACAAGCTCGATGACCCCAGTTGGCGTCAGTTGCG ************************************************..(((((....(((.(((((((((.......))))))))))))(((((.........((.((((((.......))).)))..))..........)))))....((((((((..((.((((.....)))).)).....))))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	M054 female body	V113 male body
.............................................................................................CGAGGAAGCAGGAACAAC............................................................................................................................................	18	1	3	0.33	1	0	1	0
..............................CGGAGTGGTAAAAGTAGTT..........................................................................................................................................................................................................	19	2	4	0.25	1	1	0	0
...............................................................................................................................................................................................GGACGCGAAGGGGGGTGGTTG.......................................	21	3	4	0.25	1	1	0	0
...............................................................................................................................................................................................GGGAGAGAAGGGGCGAGGTT........................................	20	3	17	0.06	1	0	0	1
.............................CCGAAGTGGGATAAGCCGT...........................................................................................................................................................................................................	19	3	18	0.06	1	0	1	0
.......................................................................................................................................................................................................................................CCCTGTGGGCGTCAGATG..	18	3	18	0.06	1	0	1	0
.......................................................................................................................................................TGGACCCCAAAACCAGCAA.................................................................................	19	3	19	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_7:1812574-1812824 -	dse_1522	ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTC-G-----------------------------------------------TCCTTGTT------------------CCCC-------GGATC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCGCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-
droSim2	2l:17732187-17732437 -		ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTC-G-----------------------------------------------TCCTTGTT------------------CCCC-------GGCTC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCGCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-
dm3	chr2L:18187011-18187261 -		ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGCG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTC-G-----------------------------------------------TCCTTGGT------------------CCCC-------GGCTC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGG-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-AGT--CGCT---GATGAGGC------------------G-----TCCCTTCTG-----TCC--------------CCGTCGCTTTCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-
droEre2	scaffold_4845:6082952-6083216 +		ACGCGCCGACCTTCAACATGAAACATGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTTCTTC-G-----------------------------------------------TCCTTGGTCCTTGGTCCTT----GGTCCTT-------GGCCC----------------------------------------TCG-----G-----CCGT--------------------GGGTAGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCTCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-
droYak3	2R:4692748-4693019 -		ACGCGCCGACCTTCAACATGAAACATGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTTCTTC-G-----------------------------------------------TCCTTGGTCCCTGGTCCCT----GGCCCTCGGGCCTCGGGAC----------------------------------------TCG-----G-----CTGT--------------------GGGTAGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCTCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTTGAGGTACTGGGGTCAACCGCAGTCAACGC-
droEug1	scf7180000409447:126415-126680 -		ACGCGCCGACCTTCAATATGAAACACGGCGGCCTGACCATATTCGGCAAGGTAAGTCCTACGCCCACT-----------------------------------------------TT----T--C--------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-G-----------------------------------------------TCCTTGGT------------------CCTT-------GGTCC----------------------------------------TTG-----T-----CCGT--------------------GGGTTGC-T-GT-CCTTTGTG-GGGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----CCC---------------TGTCTTCTTCCCGC---------------------CTC------C--------------------AACTTCATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-
droBia1	scf7180000302422:5508329-5508603 +		ACGCGCCGACCTTCAACATGAAACGCGGCGGCCTCACCATATTCGGCAAGGTAAGTCCTGCTCCCACT-----------------------------------------------TT----C-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTGG-G-----------------------------------------------TCG-------CTGGTCCT-----GGTCCCC-------GGTCC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-G-GT-CCTTTGAG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCCGCCGTGTCC--------------CCCTC--TTTCCCTC---------------------GGC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-
droTak1	scf7180000415867:417098-417376 -		ACGCGCCGACCTTCAACATGAAGCATGGCGGCCTCACCATATTCGGCAAGGTAAGTCATGCTCCCACT-----------------------------------------------TT----C-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTCG-G-----------------------------------------------TCCTTGGT------------------TCCG-------GGTCC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-T-GT-CCTTTGAG-GGGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCCGTCCCCGT-CTGCCCAGTCTTTTCCCCTC---------------------CAC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-
droEle1	scf7180000491338:2138868-2139140 -		ACGCGCCGACCTTCAACATGAAACACGGCGGCCTCACCCTATTCGGCAAGGTAAGTCCTGCTCCCTCT-----------------------------------------------TT----T-----------CGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTCG-G-----------------------------------------------TCCTCGGT------------------C--------------C----------------------------------------CCG-----G-----TCGT--------------------GGGTTGC-T-GT-CCTTTGTG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCCGACCCCCTTTCTCCCTGTCTCTTGCCCGC---------------------CTC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAGCCGCAGTCAACGC-
droRho1	scf7180000758034:1-277 +		ACGCGCCGACCTTCAACATGAA-CAC-GCGGCCTCACCATATTCGGCAAGGTAAGTCCTCCTCCCACT-----------------------------------------------AT----T-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-G-----------------------------------------------TCCTTGGT------------------CCTT-------GGTCC----------------------------------------TCG-----T-----TCGT--------------------GGGTTGC-T-GT-CCTTTGTG-GAGCTTACACGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----CCCGTCCCCCTTATTCACGGTCTTTTGCCC-C---------------------CAC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-
droFic1	scf7180000454043:250661-250954 -		ACGCGCCGACCTTCAACATGAAACACGGCGGCCTCACAATATTCGGCAAGGTAAGTCCACCTCCTTC------------------------------------------CT--CTT--CGTC-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTG-G-----------------------------------------------TCC-------------------------------------------------------------------------------CCT-----A-----TTGT--------------------GGGTTGC-T-GT-CCTTTGTG-CAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCCGTCCCGCTTTCC---CCTTCCCTTTTC-CTTTCCCTTTGCTTGACTTTTCCCCGCCGCCC--------------------AACCTCATTGTTCGTGTTACGGGGGTCAACCGCAGTCAACGC-
droKik1	scf7180000302401:399316-399597 +		ATGCCCCAACCTTCAACATGAAGCACGGCGGCCTCACCATATTCGGCAAGGTAAGTCATGGGC---------------CA-------CCA-------------------CT--CTTTCCG-C-----------ATT-----------------TCTTGCAGCTGATTTAATGCTAATTAGTTGAACGGTCCTCG-G-----------------------------------------------------------------------------------------------------------------------------------G-----T-----CCGA--------------------GGGTTGTTT-GT-CCTTTGTG-GAGCTTACATGGGGATTTTGGT--CGCT---GATGAGGC------------------GGCTCGTCCTTTCT------------------------CGTCCCCTCCTC-GCTCCCACTGGGCTGCCTTCCTCAGGTTTCCC--------------------GACTCCATTGTACGCGTAACTATGGTCAACCGCAGTCAACGC-
droAna3	scaffold_12916:2115956-2116229 -		ACGCTCCGACCTTCAACATGAAGCACGGCGGCCTCACCATATTCGGCAAGGTAAGTACTAAT--------TTGCAATCCA-------CCATC-------------CG-CCT--CTTT----T-----------CGC-----------------TGCCACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-------------------------------------------------------------------------------------------------------------------------------------------G-----CCGA--------------------GGGTTGC-T-GT-CCTTTGTGGGGGCTTACATGGGGATTT-GGA--CGCT---GATGAGGC------------------G-----TCCTTTCCG-----CCC----------------------TCCTG-T---------------------CAC-----CCGACCTCCCTGGGCTCCTTGGGAATTCATTGTGCGGGAAAGCACGGTCAACCGCAGTCAACGC-
droBip1	scf7180000396430:63584-63859 -		ACGCTCCGACCTTCAACATGAAGCACGGAGGCCTCACCATATTCGGCAAGGTAAGTACTCATCC-GCTATTTGCCATTCGCCACTCGCCATC-------------CG-CCT--CTTT----T-----------CGC-----------------TGCCACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-------------------------------------------------------------------------------------------------------------------------------------------G-----CCGA--------------------GGGTTGC-T-GT-CCTTTGTGGGGGCTTACATGGGGATTT-GGG--CGCT---GATGAGGC------------------G-----TCCTGTC-------------------------------------------------------------AC-----CCGACCTCCTTGGGCTCCTTGGGAATTCATTGTGCGGGAAAGCACGGTCAACCGCAGTCAACGC-
dp5	4_group3:4658381-4658683 +		ACGCACCGACCTTCAATATGAAACATGGCGGACTCACCCTCTTCGGGAAGGTAAGTCTC--------------------------------TTTCGGTGCCTCCTCG-TCT--CTTG----T-----------TCT-----------------TGTTACACCTGATTTAATGCTAATTAGTTGAACGGTCCGTCGGTCCGTCGGCGCAGAGGGT-CC----TGTGTGTTGCGTGGGTCCTCTGTGCTC-------TGTCCTC----TGTCCT-------CTGGCCTGTGCCTCTGTCAGTCGC----------------------------------------------------------------------------------CGGCTTACACGGGGATTT-GGT--CGCT---GATGATAC------------------G-----TCCTTTCGA------------------------------------G---------------------CACCCCGCTC--------------------AACTTCATTGT------AACTACGGTCAACCGCAGTCAACGC-
droPer2	scaffold_1:6144201-6144489 +		ACGCACCGACCTTCAATATGAAACATGGCGGACTCACCCTCTTCGGGAAGGTAAGTCTC--------------------------------TTTCGGTGCCTCCTCG-TCT--CTTG----T-----------TCT-----------------TGTTACACCTGATTTAATGCTAATTAGTTGAACGGTC---G-G----------T--------CC----TGTGTGTTGCGTGGGTCCTCTGTGCTCTGTCCTCTGTCCTC----TGTCCT-------CTGGCCTGTGCCTCTGTCAGTCGC----------------------------------------------------------------------------------CGGCTTACACGGGGATTT-GGT--CGCT---GATGATAC------------------G-----TCCTTTCGA------------------------------------G---------------------CACCCCGCTC--------------------AACTTCATTGT------AACTACGGTCAACCGCAGTCAACGC-
droWil2	scf2_1100000004521:11245494-11245763 -		ACGCGCCGACCTTCAATATGAAACACGGTGGCCTCACCATATTCGGCAAGGTAAGTGCCCCAGCTAA------------------------------------------------AA----T-----------GTC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGTC----G---------GC-AAG--------------------------------------AGGTCCCAGATCCAA----GAACCCC-------ACCC------CACAACCAGACAC----------------------AAG-----G-----CC------------------------------------------G-GGGCTTACATGGGGATTTGGTT--TGCT---GATGATGACGCAAAACCTGGAGCTGGGGCTCGCTCGT--TG-----TCC--------------TC-----------------------------------A-------------------------------CTCATTGTGT-AGTAACTGCGGTCAACCGCAGTCAACGC-
droVir3	scaffold_12963:18034137-18034458 -	dvi_12447	ATGCGCCGACCTTCAATATGAAACACGGCGGACTCACCATATTTGGCAAGGTAAGTGCTCTGC------------------------------TCCATACATCCTTACCCATT--AT----TGTTCTTCTTCTTGCTGTCGAGGAGGAGCCTCGCTTACAGCTGATTTAATGCTAATTAGTCCAATGGCC-------------GA-A--------CCATTCA---------------------------------------G--------------------------T-----------GCCCTCCAGTTCAGCTCAGTTCAGTTCGCTTCGCTTCAGTTTTGGTTAAGTTTAGTTTGGTTTGGCTTGG-G-CC-TTTTCGTG-TGGCTTACATGTGGATTT-CGTGGCGCT---TAGGACGC------------------G-----TTC---------------------------------GCC-----------------------------ATC--------------------------------------CTGCAAACTGCGGTCAACCGCAGTCAACGC-
droMoj3	scaffold_6500:26746957-26747212 -		ACGCGCCAACCTTCAACATGAAGCACGGCGGACTCACTATATTTGGCAAGGTAAGTGCCGG--C--------------CA-------TCAT--------------AG-CCTTT--AT----TGTCTGTC----CTC-----------------TCCTATAGCTGGTTTAATGCTAATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--GC-A-ATTCTCTCGTG-TGGCTTTTAGGCGGATTT-TGCGGCGCCAAGGATGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------G--TCCTTGC---AG--CCTGCGGTCAGCCACAGTCGACGCT
droGri2	scaffold_15252:6089993-6090252 -		ACGCGCCAAACTTTAATATGAAGCATGGCGGACTCACCATATTTGGCAAGGTAAGTGGCAAGTCTACA-----------------------------------------------TT----T-----------CTC-----------------CCTTTTAGCTGATTTAATTCTAATTAGTTGAGCTGCC-------------GA-AAG-AGGTGCGGTTCA---------------------------------------ATTTTGTACTAC-------TC------C-------------------GCTTGGCTTAGTTTGGGTTG-----G-----TTTT-------------------------GC-AGCT-GCCTCATG-CGGCTTAAATACGGATTT-TGTGGCGCT---AAAGATGC------------------G-----TCGTCCTC------------------------------------------------------------A-------------------------------------GTCCTGCAAGCTGCGGTCAGCCGCACTCAACGC-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTC-G-----------------------------------------------TCCTTGTT------------------CCCC-------GGATC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCGCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................T---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------C............................................................................................................	23	1	1.00	1	0	0	0	1

droSim2

ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTC-G-----------------------------------------------TCCTTGTT------------------CCCC-------GGCTC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCGCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................AGCTGATTTAATGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................AGCTGATTTAATGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............ACATGAAGCACGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

dm3

ACGCGCCGACCTTCAACATGAAGCACGGCGGCCTCACCATTTTCGGCAAGGTAAGCG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTC-G-----------------------------------------------TCCTTGGT------------------CCCC-------GGCTC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGG-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-AGT--CGCT---GATGAGGC------------------G-----TCCCTTCTG-----TCC--------------CCGTCGCTTTCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................CCTTTATG-GAGCTTACATGGG..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACGCGCCGACCTTCAACATGAAACATGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTTCTTC-G-----------------------------------------------TCCTTGGTCCTTGGTCCTT----GGTCCTT-------GGCCC----------------------------------------TCG-----G-----CCGT--------------------GGGTAGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCTCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

ACGCGCCGACCTTCAACATGAAACATGGCGGCCTCACCATTTTCGGCAAGGTAAGTG----------------------------------------------------------------------------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTTCTTC-G-----------------------------------------------TCCTTGGTCCCTGGTCCCT----GGCCCTCGGGCCTCGGGAC----------------------------------------TCG-----G-----CTGT--------------------GGGTAGC-T-AT-CCTTTATG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCC--------------CCGTCTCTTCCCC-G---------------------CAC------C--------------------AACTTTATTGTTTGAGGTACTGGGGTCAACCGCAGTCAACGC-

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

ACGCGCCGACCTTCAATATGAAACACGGCGGCCTGACCATATTCGGCAAGGTAAGTCCTACGCCCACT-----------------------------------------------TT----T--C--------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-G-----------------------------------------------TCCTTGGT------------------CCTT-------GGTCC----------------------------------------TTG-----T-----CCGT--------------------GGGTTGC-T-GT-CCTTTGTG-GGGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----CCC---------------TGTCTTCTTCCCGC---------------------CTC------C--------------------AACTTCATTGTTCGAGCTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACGCGCCGACCTTCAACATGAAACGCGGCGGCCTCACCATATTCGGCAAGGTAAGTCCTGCTCCCACT-----------------------------------------------TT----C-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTGG-G-----------------------------------------------TCG-------CTGGTCCT-----GGTCCCC-------GGTCC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-G-GT-CCTTTGAG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCCGCCGTGTCC--------------CCCTC--TTTCCCTC---------------------GGC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACGCGCCGACCTTCAACATGAAGCATGGCGGCCTCACCATATTCGGCAAGGTAAGTCATGCTCCCACT-----------------------------------------------TT----C-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTCG-G-----------------------------------------------TCCTTGGT------------------TCCG-------GGTCC----------------------------------------TCG-----G-----CCGT--------------------GGGTTGC-T-GT-CCTTTGAG-GGGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCCGTCCCCGT-CTGCCCAGTCTTTTCCCCTC---------------------CAC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACGCGCCGACCTTCAACATGAAACACGGCGGCCTCACCCTATTCGGCAAGGTAAGTCCTGCTCCCTCT-----------------------------------------------TT----T-----------CGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTCG-G-----------------------------------------------TCCTCGGT------------------C--------------C----------------------------------------CCG-----G-----TCGT--------------------GGGTTGC-T-GT-CCTTTGTG-GAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCCGACCCCCTTTCTCCCTGTCTCTTGCCCGC---------------------CTC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAGCCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACGCGCCGACCTTCAACATGAA-CAC-GCGGCCTCACCATATTCGGCAAGGTAAGTCCTCCTCCCACT-----------------------------------------------AT----T-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-G-----------------------------------------------TCCTTGGT------------------CCTT-------GGTCC----------------------------------------TCG-----T-----TCGT--------------------GGGTTGC-T-GT-CCTTTGTG-GAGCTTACACGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----CCCGTCCCCCTTATTCACGGTCTTTTGCCC-C---------------------CAC------C--------------------AACTTCATTGTTCGAGTTACTGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGCGCCGACCTTCAACATGAAACACGGCGGCCTCACAATATTCGGCAAGGTAAGTCCACCTCCTTC------------------------------------------CT--CTT--CGTC-----------TGC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGCTCCTTG-G-----------------------------------------------TCC-------------------------------------------------------------------------------CCT-----A-----TTGT--------------------GGGTTGC-T-GT-CCTTTGTG-CAGCTTACATGGGGATTT-GGT--CGCT---GATGAGGC------------------G-----TCCTTTCTG-----TCCGTCCCGCTTTCC---CCTTCCCTTTTC-CTTTCCCTTTGCTTGACTTTTCCCCGCCGCCC--------------------AACCTCATTGTTCGTGTTACGGGGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGCCCCAACCTTCAACATGAAGCACGGCGGCCTCACCATATTCGGCAAGGTAAGTCATGGGC---------------CA-------CCA-------------------CT--CTTTCCG-C-----------ATT-----------------TCTTGCAGCTGATTTAATGCTAATTAGTTGAACGGTCCTCG-G-----------------------------------------------------------------------------------------------------------------------------------G-----T-----CCGA--------------------GGGTTGTTT-GT-CCTTTGTG-GAGCTTACATGGGGATTTTGGT--CGCT---GATGAGGC------------------GGCTCGTCCTTTCT------------------------CGTCCCCTCCTC-GCTCCCACTGGGCTGCCTTCCTCAGGTTTCCC--------------------GACTCCATTGTACGCGTAACTATGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACGCTCCGACCTTCAACATGAAGCACGGCGGCCTCACCATATTCGGCAAGGTAAGTACTAAT--------TTGCAATCCA-------CCATC-------------CG-CCT--CTTT----T-----------CGC-----------------TGCCACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-------------------------------------------------------------------------------------------------------------------------------------------G-----CCGA--------------------GGGTTGC-T-GT-CCTTTGTGGGGGCTTACATGGGGATTT-GGA--CGCT---GATGAGGC------------------G-----TCCTTTCCG-----CCC----------------------TCCTG-T---------------------CAC-----CCGACCTCCCTGGGCTCCTTGGGAATTCATTGTGCGGGAAAGCACGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ACGCTCCGACCTTCAACATGAAGCACGGAGGCCTCACCATATTCGGCAAGGTAAGTACTCATCC-GCTATTTGCCATTCGCCACTCGCCATC-------------CG-CCT--CTTT----T-----------CGC-----------------TGCCACAGCTGATTTAATGCTAATTAGTTGAACGGTCCTTG-------------------------------------------------------------------------------------------------------------------------------------------G-----CCGA--------------------GGGTTGC-T-GT-CCTTTGTGGGGGCTTACATGGGGATTT-GGG--CGCT---GATGAGGC------------------G-----TCCTGTC-------------------------------------------------------------AC-----CCGACCTCCTTGGGCTCCTTGGGAATTCATTGTGCGGGAAAGCACGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACGCACCGACCTTCAATATGAAACATGGCGGACTCACCCTCTTCGGGAAGGTAAGTCTC--------------------------------TTTCGGTGCCTCCTCG-TCT--CTTG----T-----------TCT-----------------TGTTACACCTGATTTAATGCTAATTAGTTGAACGGTCCGTCGGTCCGTCGGCGCAGAGGGT-CC----TGTGTGTTGCGTGGGTCCTCTGTGCTC-------TGTCCTC----TGTCCT-------CTGGCCTGTGCCTCTGTCAGTCGC----------------------------------------------------------------------------------CGGCTTACACGGGGATTT-GGT--CGCT---GATGATAC------------------G-----TCCTTTCGA------------------------------------G---------------------CACCCCGCTC--------------------AACTTCATTGT------AACTACGGTCAACCGCAGTCAACGC-

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

ACGCACCGACCTTCAATATGAAACATGGCGGACTCACCCTCTTCGGGAAGGTAAGTCTC--------------------------------TTTCGGTGCCTCCTCG-TCT--CTTG----T-----------TCT-----------------TGTTACACCTGATTTAATGCTAATTAGTTGAACGGTC---G-G----------T--------CC----TGTGTGTTGCGTGGGTCCTCTGTGCTCTGTCCTCTGTCCTC----TGTCCT-------CTGGCCTGTGCCTCTGTCAGTCGC----------------------------------------------------------------------------------CGGCTTACACGGGGATTT-GGT--CGCT---GATGATAC------------------G-----TCCTTTCGA------------------------------------G---------------------CACCCCGCTC--------------------AACTTCATTGT------AACTACGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

ACGCGCCGACCTTCAATATGAAACACGGTGGCCTCACCATATTCGGCAAGGTAAGTGCCCCAGCTAA------------------------------------------------AA----T-----------GTC-----------------TGTTACAGCTGATTTAATGCTAATTAGTTGAACGTC----G---------GC-AAG--------------------------------------AGGTCCCAGATCCAA----GAACCCC-------ACCC------CACAACCAGACAC----------------------AAG-----G-----CC------------------------------------------G-GGGCTTACATGGGGATTTGGTT--TGCT---GATGATGACGCAAAACCTGGAGCTGGGGCTCGCTCGT--TG-----TCC--------------TC-----------------------------------A-------------------------------CTCATTGTGT-AGTAACTGCGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................AACCAGACAC----------------------AAG-----G-----CC------------------------------------------G-GGGCTTAC...................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0

droVir3

ATGCGCCGACCTTCAATATGAAACACGGCGGACTCACCATATTTGGCAAGGTAAGTGCTCTGC------------------------------TCCATACATCCTTACCCATT--AT----TGTTCTTCTTCTTGCTGTCGAGGAGGAGCCTCGCTTACAGCTGATTTAATGCTAATTAGTCCAATGGCC-------------GA-A--------CCATTCA---------------------------------------G--------------------------T-----------GCCCTCCAGTTCAGCTCAGTTCAGTTCGCTTCGCTTCAGTTTTGGTTAAGTTTAGTTTGGTTTGGCTTGG-G-CC-TTTTCGTG-TGGCTTACATGTGGATTT-CGTGGCGCT---TAGGACGC------------------G-----TTC---------------------------------GCC-----------------------------ATC--------------------------------------CTGCAAACTGCGGTCAACCGCAGTCAACGC-	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................TCGTG-TGGCTTACATGTGGATTT-CGT.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TTCGTG-TGGCTTACATGTGGATTT-CG......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................TTAAGTTTAGTTTGGTTTGGCTTGG-G-C......................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTTCGCTTCAGTTTTGGTT.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TAATTAGTCCAATGGCC-------------GA-A--------.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCACCATATTTGGCAAGGTAAGTGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACGCGCCAACCTTCAACATGAAGCACGGCGGACTCACTATATTTGGCAAGGTAAGTGCCGG--C--------------CA-------TCAT--------------AG-CCTTT--AT----TGTCTGTC----CTC-----------------TCCTATAGCTGGTTTAATGCTAATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--GC-A-ATTCTCTCGTG-TGGCTTTTAGGCGGATTT-TGCGGCGCCAAGGATGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------G--TCCTTGC---AG--CCTGCGGTCAGCCACAGTCGACGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGCGGCGCCAAGGATGAAGC------------------G-----TGC.........................................................................................................................................	26	1	12.00	12	0	0	0	0	0	12
.................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGCGGCGCCAAGGATGAAGC------------------G-----TG..........................................................................................................................................	25	1	9.00	9	0	0	0	0	0	9
...........TTCAACATGAAGCACGGCGGACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	0	0	0	1	0	8
.....................................................................................................................................................................TTTAATGCTAATTAGTCGGGG--------------------A--------CGGT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	9
......................................................................................................................................................................TTAATGCTAATTAGTCGGGG--------------------A--------CGGT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	7
.....................................................................................................................................................................................................................................................................................................................TTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--............................................................................................................................................................................................................................	27	1	7.00	7	0	0	0	0	0	7
.....................................................................................................................................................................................................................................................................................................................TTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GG...............................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	7
.......................................................................................................................................................................TAATGCTAATTAGTCGGGG--------------------A--------CGG..................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	7
.....................................................................................................................................................................TTTAATGCTAATTAGTCGGGG--------------------A--------CGG..................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	6
............................................................................................................................................................TATAGCTGGTTTAATGCTAATTAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	6.00	6	0	0	0	0	0	6
.......................................................................................................................................................................TAATGCTAATTAGTCGGGG--------------------A--------CGGTT................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	6
....................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGCCAAGGATGAAGC------------------G-----TGC.........................................................................................................................................	24	1	6.00	6	0	0	0	0	0	6
.............................................................................................................................................................................TAATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTC....................................................................................................................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	0	6
.................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTTTAGGCGGATTT-TGCGGC..................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	4
...........................................................................................................................................................................................................................TCA---------------------------------------G--------------------------C-------------------GTTCAGCTCACTTTAGTTCG-----G-----TT.......................................................................................................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	4
...............................................................................................................................................................................ATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTC....................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	4
......................................................................................................................................................................................................................................................................................................................TCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--............................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	4
..........................................................................................................................................................................TGCTAATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------............................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	4
.................................TCACTATATTTGGCAAGGTAAGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	1	0	0	0	0	3
.................................................................................................................................................................................TAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGC.................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
............TCAACATGAAGCACGGCGGACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	3
..........................................................................................................................................................................................................................TTCA---------------------------------------G--------------------------C-------------------GTTCAGCTCACTTTAGTTCG-----G-----.........................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	3
..................................................................................................................................................................................................................................................................................................................................................................................................................T-TGCGGCGCCAAGGATGAAGC------------------G-----TG..........................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
......................................................................................................................................................................TTAATGCTAATTAGTCGGGG--------------------A--------CGG..................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
...........TTCAACATGAAGCACGGCGGACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
....................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGCCAAGGATGAAGC------------------G-----TG..........................................................................................................................................	23	1	3.00	3	1	0	0	0	0	2
.......................................................................................................................................................................TAATGCTAATTAGTCGGGG--------------------A--------CGGTTC...............................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................................................................................TTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------G................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---AG--CCTGCGGTCAGCCACAGTCG.....	26	1	2.00	2	0	0	0	0	0	2
............TCAACATGAAGCACGGCGGACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCGTG-TGGCTTTTAGGCGGATTT-........................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................TCACTTTAGTTCG-----G-----TTTT--------------------GGG--GC-.........................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TTAATGCTAATTAGTCGGGG--------------------A--------CGGTTC...............................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................TTAATGCTAATTAGTCGGGG--------------------A--------CGGTT................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
............TCAACATGAAGCACGGCGGACTCACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................TTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--T...........................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................TCGTG-TGGCTTTTAGGCGGATTT-TGC.....................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................TT--------------------GGG--GC-A-ATTCTCTCGTG-TGGCTT.....................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................CAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--............................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................TTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTC....................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTC------------------------------------------------------------A-----------------------------G--TCCTTGC---AG--CCTGCGGTC................	25	1	2.00	2	0	0	1	0	0	1
...........TTCAACATGAAGCACGGCGGACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
...........TTCAACATGAAGCACGGCGGACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................TTT--------------------GGG--GC-A-ATTCTCTCGTG-TGGCT......................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1
...........TTCAACATGAAGCACGGCGGACTCACTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................................................................................................TG-TGGCTTTTAGGCGGATTT-TGCGGC..................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................................................................................................................TCTCGTG-TGGCTTTTAGGCGGATTT-........................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--G...........................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TGCGGCGCCAAGGATGAAGC------------------G-----TGC.........................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTTAGTTCG-----G-----TTTT--------------------GGG--GC-A-ATTCT..................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGATGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------G--TCC....................................	27	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCGTG-TGGCTTTTAGGCGGATT..........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................TATAGCTGGTTTAATGCTAATTAGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..............................GACTCACTATATTTGGCAAGGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................TCTCTCGTG-TGGCTTTTAGGCGGATT..........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................TCGTG-TGGCTTTTAGGCGGATTT-TG......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................TCGTG-TGGCTTTTAGGCGGATTT-TGCGG...................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGCGGATTT-TGCGGCGC................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................CTATATTTGGCAAGGTAAGTGCCGG--C--------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................AGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGC.................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................GTG-TGGCTTTTAGGCGGATTT-TGCGGC..................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................TTCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--G...........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TGCGGCGCCAAGGATGAAGC------------------..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................TATATTTGGCAAGGTAAGTGCCGG--C--------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............AACATGAAGCACGGCGGACTCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................TTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCA...................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................G-TGGCTTTTAGGCGGATTT-TGCGGC..................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................TCTCGTG-TGGCTTTTAGGCGGATT..........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................GTTTAATGCTAATTAGTCGGGG--------------------A--------CGG..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................TTTT--------------------GGG--GC-A-ATTCTCTCGTG-TGGCTC.....................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................TTT--------------------GGG--GC-A-ATTCTCTCGTG-TGGCTT.....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.................................TCACTATATTTGGCAAGGTAAGTGCCGG--C--------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................TGGTTTAATGCTAATTAGTCGGGG--------------------A--------.....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................TTCA---------------------------------------G--------------------------C-------------------GTTCAGCTCACTTTAGTTCG-----G-----T........................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................TCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTT.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................TGAAGCACGGCGGACTCACTATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................G-CCTTT--AT----TGTCTGTC----CTC-----------------TCCTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................CTAATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------G.......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TGCGGCGCCAAGGATGAAGC------------------G-----TG..........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................GCGGACTCACTATATTTGGCAAGGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................TTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAG..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................TTTAGTTCG-----G-----TTTT--------------------GGG--GC-A-ATTC...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................TAGGCGGATTT-TGCGGCGCCAAGGATG........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................................TCACTATATTTGGCAAGGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................TTCG-----G-----TTTT--------------------GGG--GC-A-ATTCTCTCGTG-T..........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............CAACATGAAGCACGGCGGACTCACTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................T-TGCGGCGCCAAGGATGAAGC------------------G-----TGC.........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................TAGTTCG-----G-----TTTT--------------------GGG--GC-A-ATTCTCTC...............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................TCACTTTAGTTCG-----G-----TTTT--------------------GGG--............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................AGCACGGCGGACTCACTATATTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................TCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GG...............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................TTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGC.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................AATTAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTC....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................GTTCG-----G-----TTTT--------------------GGG--GC-A-ATTCTCTC...............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................TAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................TCAGCTCACTTTAGTTCG-----G-----TTTT--------------------G................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................CACGGCGGACTCACTATATTTGGCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.................ATGAAGCACGGCGGACTCACTATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................CGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGCTC...............................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------G--TCCTTGC---AG--.........................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCGTG-TGGCTTTTAGGC...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................GCTAATTAGTCGGGG--------------------A--------CGGTTC...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGCGGCGCCAAGGATGAAGC------------------G-----TGCT........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------G--TCCTTGC---AG--C........................	27	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................TCAGCTCACTTTAGTTCG-----G-----TTTT--------------------GGG--G...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................TCA---------------------------------------G--------------------------C-------------------GTTCAGCTCACTTTAGTTCG-----G-----T........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGCGGCGCCAAGGATGAAGC------------------G-----T...........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................ACTTTAGTTCG-----G-----TTTT--------------------GGG--............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................TCTCTCGTG-TGGCTTTTAGGCGGA............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................TCACTATATTTGGCAAGGTAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................TAATGCTAATTAGTCGGGG--------------------A--------CGGTC................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCGTG-TGGCTTTTAGGCGGA............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCAAGGATGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------..........................................	27	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................G-TGGCTTTTAGGCGGATTT-TGCG....................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGATGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------G--TC.....................................	26	1	1.00	1	0	0	0	0	0	1
..............................GACTCACTATATTTGGCAAGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGATGAAGC------------------G-----TGCTTCTC------------------------------------------------------------A-----------------------------..........................................	24	1	1.00	1	1	0	0	0	0	0
........ACCTTCAACATGAAGCACGGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................T--------------AG-CCTTT--AT----TGTCTGTC----CTC-----------------TCC................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................TAATGCTAATTAGTCGGGG--------------------A--------.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................TTTT--------------------GGG--GC-A-ATTCTCTCGTG-TGG........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGCGGCGCCAAGGATGAAGC------------------..................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................TCACTATATTTGGCAAGGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................TG-TGGCTTTTAGGCGGATTT-TGCG....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................TAATGCTAATTAGTCGGGG--------------------A--------CGGT.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................TAGTCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAG..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........TTCAACATGAAGCACGGCGGACTCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................TCCTATAGCTGGTTTAATGCTAATTAG........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........ACCTTCAACATGAAGCACGGCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................TAGTTCG-----G-----TTTT--------------------GGG--GC-A-ATTCTCTCGC.............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................TCGGGG--------------------A--------CGGTTCA---------------------------------------G--------------------------C-------------------GTTCAGCTCA..............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................TAGCTGGTTTAATGCTAATTAGTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGCGGATTT-TGCGGCGCCAAGG...........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................TG-TGGCTTTTAGGCGGATTT-TGCGGCGC................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TTAATGCTAATTAGTCGGGG--------------------A--------.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................TGCTAATTAGTCGGGG--------------------A--------CGGTTC...............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................TGAAGCACGGCGGACTCACTATATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................TTTT--------------------GGG--GC-A-ATTCTCTCGTG-TGGC.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droGri2

ACGCGCCAAACTTTAATATGAAGCATGGCGGACTCACCATATTTGGCAAGGTAAGTGGCAAGTCTACA-----------------------------------------------TT----T-----------CTC-----------------CCTTTTAGCTGATTTAATTCTAATTAGTTGAGCTGCC-------------GA-AAG-AGGTGCGGTTCA---------------------------------------ATTTTGTACTAC-------TC------C-------------------GCTTGGCTTAGTTTGGGTTG-----G-----TTTT-------------------------GC-AGCT-GCCTCATG-CGGCTTAAATACGGATTT-TGTGGCGCT---AAAGATGC------------------G-----TCGTCCTC------------------------------------------------------------A-------------------------------------GTCCTGCAAGCTGCGGTCAGCCGCACTCAACGC-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_1522

scaffold_7:1812624-1812774 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads