ID:

dse_1489

 Coordinate:

scaffold_6:3871818-3872069 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.7 -5.5

Flybase annnotation

exon [dsec_GLEANR_10479:2]; intron [Dsec\GM10442-in]; CDS [Dsec\GM10442-cds]; exon [dsec_GLEANR_10479:3]; CDS [Dsec\GM10442-cds]; intron [Dsec\GM10442-in]

No Repeatable elements found

Sense Strand Reads

-------------------------#########################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTTAGTGATTAATAATATTGCAGAGCTCCGTTACGCTTCCAGCCCCTGGTATGTTTTATTCTAAGCTAACAGTTCAAATTTCCCGCCAATCACTTTTGTAGCATCGGGCTTCTGTAAGACAGCGTTAAAACGCACTAAAAGTTACCGAGGTATTTTCAAAAAAATGAAGTATGGGAAGATTAATTCCTAGTAAGCCCATATTCAATCTCATATAATCATTTACATACCACACAAGCGAGGCATTTGTAAAGAATTCTTCACCGCGCTCATTTCGCTAATTATTGCTGCGGTCTATTTTAGGCGTGTGCGATAGTACAATCAACGAAGCTGCTGAAAACCCACCCGATTCC
*************************************************************************************************************************************************************************************************************************************************.....................((((((.................)).))))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V115
head
 V113
male body		 V114
embryo
.......................................................................................................................................................................................AATTCCTAGTAAGCGCAA....................................................................................................................................................... 18 2 4 34.00 136 51 69 4 12
......................................................................................................................................................................................GAATTCCTAGTAAGCGCA........................................................................................................................................................ 18 2 5 26.00 130 75 49 2 4
.......................................................................................................................................................................................AATTCCTAGTAAGCGCAAGT..................................................................................................................................................... 20 3 7 10.43 73 17 4 48 4
...................................................................................................................................................................................GATGAATTCCTAGTAAGCGCA........................................................................................................................................................ 21 2 1 5.00 5 3 0 2 0
.....................................................................................................................................................................................GTAATTCCTAGTAAGCGCA........................................................................................................................................................ 19 2 1 5.00 5 4 0 0 1
...................................................................................................................................................................................GATGAATTCCTAGTAAGCGCAA....................................................................................................................................................... 22 3 1 4.00 4 4 0 0 0
.................................................................................................................................................................................................................................................GCATTTGTAAAGAATTCTTCACCG....................................................................................... 24 0 1 4.00 4 2 0 1 1
...................................................................................................................................................................................GAGTAATTCCTAGTAAGCGCAA....................................................................................................................................................... 22 3 1 3.00 3 0 1 2 0
.......................................................................................................................................................................................AATTCCTAGTAAGCGCAAG...................................................................................................................................................... 19 3 19 2.53 48 20 14 13 1
................................................................................................................................................................................................................................................GGCATTTGTAAAGAATTCTTCAC......................................................................................... 23 0 1 2.00 2 2 0 0 0
...................................................................................................................................................................................GAGGAATTCCTAGTAAGCCCA........................................................................................................................................................ 21 2 2 2.00 4 0 0 4 0
...................................................................................................................................................................................................................................................ATTTGTAAAGAATTCTTCACCG....................................................................................... 22 0 1 2.00 2 1 0 0 1
.....................................................................................................................................................................................GTAATTCCTAGTAAGCGCAA....................................................................................................................................................... 20 3 2 1.50 3 2 1 0 0
......................................................................................................................................................................................CAATTCCTAGTAAGCGCA........................................................................................................................................................ 18 2 2 1.50 3 2 1 0 0
..............................................................................................................................................................................................................................................................ATTCTTCACCGCGCTCATTTC............................................................................. 21 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................................................................................................TATTTTAGGCGTGTGCGATA...................................... 20 0 1 1.00 1 0 0 0 1
........................................................................................................................................................................................................................................................................................................TTTTAGGCGTGTGCGATAGT.................................... 20 0 1 1.00 1 0 1 0 0
..................................................................................................................................................................................................................................................................TTCACCGCGCTCATTTCGCTA......................................................................... 21 0 1 1.00 1 0 0 0 1
..................................................................................................................................................................................................................................................................TTCACCGCGCTCATTTCG............................................................................ 18 0 1 1.00 1 0 0 0 1
......................................................................................................................................................................................................................................................................................................................GATAGTACAATCAACGAAGCTGCT.................. 24 0 1 1.00 1 0 0 0 1
...............................................................................................................................................................................................................................................AGGCATTTATAAAGAATTCTTCACCGCG..................................................................................... 28 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................ATTTTAGGCGTGTGCGATA...................................... 19 0 1 1.00 1 0 0 0 1
...................................................................................................................................................................................GAGTAATTCCTAGTAAGCGC......................................................................................................................................................... 20 2 2 1.00 2 1 0 1 0
..........................................................................................................................................................................................................................................................................GCTCATTTCGCTAATTATTGCTGCGG............................................................ 26 0 1 1.00 1 0 0 0 1
............................................................................................................................................................................................................................................GCGAGGCATTTGTAAAGAATTCTTCAC......................................................................................... 27 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................TGAATTCCTAGTAAGCGCA........................................................................................................................................................ 19 2 2 1.00 2 2 0 0 0
..................................................................................................................................................................................................................................................................................CGCTAATTATTGCTGCGG............................................................ 18 0 1 1.00 1 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................ATCAACGAAGCTGCTGAAAACCCACCC...... 27 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................................................TTGTAAAGAATTCTTCACCG....................................................................................... 20 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................CAACGAAGCTGCTGAAAACC........... 20 0 1 1.00 1 0 0 0 1
...................................................................................................................................................................................................................................................ATTTGTAAAGAATTCTTCACCGCT..................................................................................... 24 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................GCTCATTTCGCTAATTATCGCTGCGGT........................................................... 27 1 1 1.00 1 0 0 1 0
................................................................................................................................................................................................................................................GGCATTTGTAAAGAATTCTT............................................................................................ 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................................................AAAGAATTCTTCACCGCGCT................................................................................... 20 0 1 1.00 1 0 0 0 1
..........................................................................................................................................................................................................................................AAGCGAGGCATTTGTAAA.................................................................................................... 18 0 1 1.00 1 0 0 0 1
.................................................................................................................................................................................................................................ATACCACACAAGCGAGGC............................................................................................................. 18 0 1 1.00 1 0 0 0 1
...................................................................................................................................................................................GATGAATTCCTAGTAAGCGCATGT..................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0
...................................................................................................................................................................................GAGTAATTCCTAGTAAGCGCA........................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................................................ATTTGTAAAGAATTCTTCACCGCG..................................................................................... 24 0 1 1.00 1 0 0 1 0
...............................................................................................................................................................................................................................ACATACCACACAAGCGAG............................................................................................................... 18 0 1 1.00 1 0 0 0 1
...................................................................................................................................................................................GATAAATTCCTAGTAAGCGC......................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................................................................TTTCGCTAATTATTGCTGCGGT........................................................... 22 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................................................................................................TTTGTAAAGAATTCTTCACCGCGCTCAT................................................................................ 28 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................TACATACCACACAAGCGAGGCATT.......................................................................................................... 24 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................GTACAATCAACGAAGCTGCT.................. 20 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................................................................GCTAATTATTGCTGCGGT........................................................... 18 0 1 1.00 1 0 0 0 1
................................................................................................................................................................................................................................................GGCATTTGTAAAGAATTCTTCACCG....................................................................................... 25 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................................................................TTCACCGCGCTCATTTCGC........................................................................... 19 0 1 1.00 1 0 0 0 1
..............................................................................................................................................................................................................................................................................................CTGCGGTCTATTTTAGGCG............................................... 19 0 1 1.00 1 0 0 0 1
.................................................................................................................................................................................ACGAGGAATTCCTAGTAAGCCCA........................................................................................................................................................ 23 3 2 1.00 2 2 0 0 0
....................................................................................................................................................................................AGTAATTCCTAGTAAGCGCA........................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................................................................................TGCGGTCTATTTTAGGCGTGTGC.......................................... 23 0 1 1.00 1 0 0 0 1
...............................GTTAAGATTCCGGCCCCTGG............................................................................................................................................................................................................................................................................................................. 20 3 4 0.75 3 0 3 0 0
.....................................................................................................................................................................................GGAATTCCTAGTAAGCCCA........................................................................................................................................................ 19 2 4 0.75 3 3 0 0 0
.....................................................................................................................................................................................GTAATTCCTAGTAAGCGC......................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0
.....................................................................................................................................................................................TGAATTCCTAGTAAGCGC......................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0
...................................................................................................................................................................................GAGAAATTCCTAGTAAGCGCA........................................................................................................................................................ 21 3 3 0.67 2 0 0 2 0
.................................................................................................................................................................................AAGAGGAATTCCTAGTAAGCGCA........................................................................................................................................................ 23 3 2 0.50 1 1 0 0 0
...............................GTTACGATTCCGGCACCTGG............................................................................................................................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 1 0
......................................................................................................................................................................................GAATTCCTAGTAAGCGCATGT..................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0
......................................................................................................................................................................................GAATTCCTAGTAAGCCCC........................................................................................................................................................ 18 2 2 0.50 1 0 1 0 0
......................................................................................................................................................................................TAATTCCTAGTAAGCGCAA....................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0
...................................................................................................................................................................................GATGAATTCCTAGTAAGCGC......................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0
.......................................................................................................................................................................................AATTCCTAGTAAGCCCAAGT..................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0
...................................................................................................................................................................................GACGAATTCCTAGTAAGCGCA........................................................................................................................................................ 21 3 2 0.50 1 0 0 1 0
......................................................................................................................................................................................TAATTCCTAGTAAGCGCAAGT..................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................AATTCCTAGTAAGCTCAA....................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0
......................................................................................................................................................................................GAATTCCTAGTAAGCCCAA....................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0
........................................................................................................................................................................................ATTCCTAGTAAGCGCATGTC.................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0
.....................................................................................................................................................................................TGAATTCCTAGTAAGCGCAA....................................................................................................................................................... 20 3 6 0.33 2 2 0 0 0
...................................................................................................................................................................................GAGGAATTCCTAGTAAGCTCA........................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0
...................................................................................................................................................................................GAGGAATTCCTAGTAAGCACA........................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0
......................................................................................................................................................................................AAATTCCTAGTAAGCGCA........................................................................................................................................................ 18 2 7 0.29 2 2 0 0 0
.....................................................................................................................................................................................GGAATTCCTAGTAAGCTCA........................................................................................................................................................ 19 3 15 0.27 4 4 0 0 0
...............................GTTACGATTCCAGAACCTGG............................................................................................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 1 0
...................................................................................................................................................................................GAGGAATTCCTAGTAAGCC.......................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................AATTCCTAGTAAGCACAA....................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0
........................................................................................................................................................................................ATTCCTAGTAAGCGCAAATC.................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0
.....................................................................................................................................................................................GGAATTCCTAGTAAGCCC......................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0
.......................................................................................................................................................................................AATTCCTAGTAAGCGCAATT..................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0
.....................................................................................................................................................................................TGAATTCCTAGTAAGCTCAA....................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0
.....................................................................................................................................................................................GGAATTCCTAGTAAGCACA........................................................................................................................................................ 19 3 20 0.15 3 3 0 0 0
...............................GTTACGCTTCCGGAACCTGG............................................................................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0
...............................GTTACGATTCCGGCACCTG.............................................................................................................................................................................................................................................................................................................. 19 3 12 0.08 1 0 1 0 0
...................................................................................................................................................................AACTGAAGGATTGGAAGATT......................................................................................................................................................................... 20 3 14 0.07 1 0 1 0 0
............................................................................................................................CGTTAAAACGCACTGGAGG................................................................................................................................................................................................................. 19 3 14 0.07 1 1 0 0 0
......................................................................................................................................................................................GAATTCCTAGTAAGCGCAC....................................................................................................................................................... 19 3 15 0.07 1 0 0 0 1
.....................................................................................................................................................................................GCAATTCCTAGTAAGCGCA........................................................................................................................................................ 19 3 18 0.06 1 0 0 1 0

Anti-sense strand reads

AAAAATCACTAATTATTATAACGTCTCGAGGCAATGCGAAGGTCGGGGACCATACAAAATAAGATTCGATTGTCAAGTTTAAAGGGCGGTTAGTGAAAACATCGTAGCCCGAAGACATTCTGTCGCAATTTTGCGTGATTTTCAATGGCTCCATAAAAGTTTTTTTACTTCATACCCTTCTAATTAAGGATCATTCGGGTATAAGTTAGAGTATATTAGTAAATGTATGGTGTGTTCGCTCCGTAAACATTTCTTAAGAAGTGGCGCGAGTAAAGCGATTAATAACGACGCCAGATAAAATCCGCACACGCTATCATGTTAGTTGCTTCGACGACTTTTGGGTGGGCTAAGG
************************************************************.....................((((((.................)).))))************************************************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body
..............................................................................................................................................................................................................................................................................................................................TTAGTTGCTTCGACTACTGA.............. 20 3 11 0.09 1 1 0
.........................................................................................................................................................................................................TAAGTGCGAGTATTTTAGTA................................................................................................................................... 20 3 16 0.06 1 0 1
...................................................................................................................................................................GCTACTTCATTCCCTTCTA.......................................................................................................................................................................... 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_6:3871768-3872119 - dse_1489 TTTTTAG--------------------TGATT---AATAATATT-----------------GCAGAGCTCCGTTACGCTTCCAGCCCCTGGTATGTTTTATTCTAAG-------------------------CTAACAGTTCAAATTTCCCGCCAATCACTTTTGTAGCATCGGGCTTCTGTAAGACAGCGTTAAAACGCACTAAAA--------------------GT---------------TACCGAGGTATTTTCAAAAAA-------------------------------------------------AT-GA--------------------------AGT-------ATGGGAAGATTAATTCCTAGT---AAGCCCATATTCAATCTCATATAATCATTTACATACCACACAAGCGAGGCATTTGTAAAGAATTCTTCACCGCGCTCATTTCGCTAAT----TATTGCTGCGGTCTATTTTAGGCGTGTGCGATAGTACAATCAACGAAGCTG---CTGAAAACCCACCCGATTCC
droSim2 3r:3690843-3691198 - dsi_22827 TTTTTAG--------------------TGATT---AATAATATT-----------------GCAGAGCTCCGTTACGCTTCCAGCCCCTGGTATGTTTTATTCTAAG-------------------------CTAACAGTTCAAATTTCCCGCCAATCACTTTTGTAGCATTGGGCTTCTGTAAGACAGCGAAAAAACGCACTGAAA--------------------AT---------------TACCGAGGTATTTTAAAAAAA-------------------------------------------------AA-AAAAAC----------------------AGTA-------TGGGAAGATTAATTCCTAGT---AAGCCCGTATTCAATCTCATAAAATCATTTACATACCACACAAGCGAGGCATTTGTAAGGAATTCTTCACAGCGTTCATTTCGCTAAT----TATTGCTGCGGTCTATTTTAGGCGTGTGCGATAGTACAATCAACGCAGCTG---CTGAAAACCAACCCGATTCT
dm3 chr3R:3803348-3803709 - TTTTAAG--------------------TGATT---AAAAATATT-----------------GCAGAGCTCCGTTACGCTACCAGCTCCTGGTGAGTTTT--TCTAAG-------------------------CTAACAGTTCAAATTTCCCGCCAATCAGTTTTGTAGCAACGAGCATCTGTAAGACAGCGTAAGTAGGCACTGAAA--------------------AT---------------CGCCGAGGTATTTTATAAAAA------------------------------------------------TATGGAATAA----------------------GGTATGACCGATGGGTAGATTAATTCCTGGT---AAGCCCGTATTCAATCT-ATAAAATATTTTACATACCACACAAACGAGGCATTTGTAAGGAATTCTTCACCGCGTTCATTTCGCTAAT----TCTTGCTGCGGTCTATTTTAGGCGTATGTGATAGTACAATCAACGCAGCTG---CTGAATACCCACCCGATTCC
droEre2 scaffold_4770:4042390-4042749 - TTCTTAG--------------------TA-AT---AATAATATT-----------------GCAGAGCTCCGTCACGCTTCCAGCGCCTGGTGAGTTTAA-TCTAAG-------------------------CAAACAATTCAAATTTCGCGCCACTCGGTTTTGTAGCATTGAGCTTCTGTAAGACAGCGTA-AAACGCACTGAAA--------------------AT---------------CACCGAGGA-TTTTGTAAAAA------------------------------------------------ATT-GATTGA----------------------AGTATGACCGATGGGAAGATTTATTCCTAGT---ATGACCGTATTCGTTCCCATAAAATATTTTACATTCCACACAAACGAGGCATTTGTTCAGAATTCCTCACCGCGTTTAATTCGCTAAT----TTTCGCTGTGGTCTATTTTAGGCGTGTCTGATAGTACAATCAACGCAGCTG---CTGAAGGTCCATCCGATTCC
droYak3 3R:6470589-6470947 + TTTTTAG--------------------TA-AT---AACAATATT-----------------GCAGAGCTCCGTCACGCTTCCAGCTCCTGGTGAGTTTT--CCTTAG-------------------------CAAACTATTCAATTTTCGCGCCAGTCAGGGTTGCAGCATTCAGCTTCTGTAAGACAGCGA-AAAACGCACTAAAA--------------------AT---------------CAACGAGGTATTTTGAAAAAG-------------------------------------------------TT-GAAGGA----------------------AGTATGACCGATGGCAAGATTTATTCCTAGT---AAGCCCGTATTCGTTCTCATAAAATATTTTACATTCCACACATGCGAGCCACTTGCACAGAATGCCTCACCGCGTTTAATTCGCTAAT----TTTCGCAGTGGTCTATTTTAGGCGTGTCTCTTAGTACAACGAACGCAGCTG---CTGAAAACCCAACCGATTCC
droEug1 scf7180000409760:747904-748227 - TAATA------------------------ACC---AATTATATT-----------------ACAGAACTCTGTCACACTTCCAGTTACTGGTAAGTTTA--TCTTAA-------------------------CAACGAATTCAAATATCCCGCGACTGAGTGTTGCAGCAACTAACTTTTTTAAGACTACTAGAAAATGGGCTAAAA-----------------------------------------------------------------------------------------------------------------TAT----------------------AGTATGACCGTT---CAGATATATTTGCAAT---AAGGCCGTATT----GTCATAAAATATTTGACATCCCACACAATCGCATCATTTGTACAGAATTTTTCAACGCGTTCATCTCGCTTAT----T-TTTTGGTGTTCTATTTTAGGCGTGTCAGATAGTACAATCAACGCAGCTGCAGCTGAAAACCCAGTTGATACC
droBia1 scf7180000302155:750318-750705 + TCCTAAGGT--------------TATA--TAC---ACTAA-TTT-----------------TTAGAACTCTGTCACGCTTCCTGCCAATGGTA-GTTTC--TCTGAA-------------------------CGAGCAAATCGAATTTGGCGCCCATTAGTTTTGCAGCAGCGGGCTTTTGTAAGAGCACTT------------AGT--------------------ATGACCGTTTCGAGATGTC--GATGGATTCCAGC--GATTGCTTACGTTTGATTACGTTTCCTTATGGCTGCTTACTTACGGTCGCTTTCGTTCAAAAAC------------AAAAACA------TCGTTAACATCGT------------TTTTCTCCACCTCCAAT-TCAAAAAATATTCGACACTCA---AAACCG-CTCAT------------TTTCAACGCGTTC-----TCCAAA----TCCTACCGTGTTCTATTTTAGGCGTGTCAGGTACTACAATCAACGCAGCTGCTGCTGAAACCCCACCCGTTTCC
droTak1 scf7180000415396:55538-55703 - TTTAAAGCC--------------TATA--AAC---ACCAATGTT-----------------TCAGAACTCCGTCACACTTCCAGCGACTGGTAAGTTTC--CCTGAA-------------------------CCAGCAATTTGAATTTCGCGCCATTCAGTTTCGTAGCAAATGGCTTTTGTAAGACTACTTGAAACCACCCCGAAA--------------------TG---------------TTCGGAAAAATATTAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491104:384890-385222 + TTTGTAA--------------------TAAAC---AATAATATT-----------------GCAGAACTCCGTGACGCTTCCAGTTAGTGGTAAGTTCC--TCTGAA-------------------------CAAGCAATTCAAATTTCGCGGCATTCAG--------CATTTG----------GATTACTCAAAAATGCGCTAATG--------------------TC---------------CGCCAAA-------CA---------------------------------------------------------AAAAAT----------------------TGTATGACCCTTGCAAAGCAGTATTTTTAGT---GTGACCATGTTGGGTCTCACAAAATATTTATCATCCCACAAAATCAAGTCATTTGTACAGAATTTTTCAACGCGTTCACCTCGCTAATATTAATTTACGGTGATCTATTTCAGTCGTGTCTAATAGTTCCACTAACGCAGCTG---CCGTAGCACCGACCGATTCC
droRho1 scf7180000777977:113812-114135 - TTTATAA--------------------TAAAC---AATAATATT-----------------TCAGAACTCCGTGACACTTCCAGTTAGTGGTAAGTTCA--TTTAAA-------------------------CAAACCATTTGAATTTCGCGCCATTCAT------------------CATTCAGACAACTCAAAAATGCGCTAAAT--------------------GC---------------CTCTCTGAA--------------------------------------------------------------------AT----------------------TGTAGGACCGTTGCAAAGATCCATTTTTAGT---AGGACCATATTAATTCTCATGAAACATTTTACGCACGGCACAATCAATTCATTTGTACTGAATTTCTCGAAGCGCTCATCTCGCTAAA----T-CTACGGTGATCTATTTCAGGCGTATCTGATAGTACCATAAACGCAGCTC---CCGATACCACGACAAAACCC
droFic1 scf7180000454096:934844-935190 + TTTTTATTT----------AATCA---TAAGC---AATTCTATT-----------------GCAGACATCTGTTACACTCCCCGTTGCTGGTAAGTTTT--TCAGAT-------------------------CGAACAATTCGAATTTCGCGCCA-TCAGTTTTGTAGCAATTTTTGTTTGTGAGGCTGCTCGCATTTCTGTTAAGAACTTTTTTAGCGAAAGCGCCTC------------------------------------------------------------------------------------TATCGGACAAAAGATGTCCTATCGATAAAGC------AATCGAAGGAGTGATTTTTATCGAACAATCTATCCAGCTC-------------------------------------TAATTTGTACAGAATTTTTCAA--CGTTTAAGTCGCTAAT----T-TTGCTGCGGTCTATTTTAGGCGTGCCAGAAAGTCCAATCAACGCAGCTG---CTCAGAACCCAACAGATTCC
droKik1 scf7180000302392:266678-266803 - TTTTGTT--------------------TTATTAATATCTGTATT-----------------GCAGAATTCCGTGACTTTGCCTGTTACTGGTAAGTTGT--TTT--------------------------------CAGATTAAATTTCGCGCCAAGCGATTTTATATCATTTGGCTTTTGAGAGTGAGCATTGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:14911407-14911512 - TTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATCTCAACGTGTTCACATCGTTG-T----TCTAATTGTGGTCCATTTTAGGCGTGTCTGCTAATAAAAGCAACGCTTCTG---GCGAAGCTGCGAGTGACTCT
droBip1 scf7180000395971:276615-276720 + TTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTCTCAACGTGTTCACATCGCTG-T----TCTAATTGTGGTCCATTTTAGGCGTGTCTGATAATAAAAGCAACGCTTCTG---GTGAAGCTGCAAGTGACTCC
dp5 2:16978004-16978124 + TAATTTGTTTCACTGAAATAAGCCAA---ATA---CATCTTATT-----------------GCAGAATTCCGCTACATTGCCTGTTACAGGTCTGTATAC----ACC-------------------------CTAAGCATTTGAAATTTGCGCCAAGAATATTTGGCGTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:3412254-3412352 - TGTTTCACC-----GAAATAAGCCAA---ATA---CATCTTATT-----------------GCAGAACTCCGCTACATTGCCTGTTACAGGTCTGTATAC----ACC-------------------------CTAAACATTTGAAATTTGCGCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:13150400-13150542 + TTATTAA--------------------TTATT---TTTAATTTTTGTTTTATTTTATCTTATTAGAATTCTGTAACGCTGCCAGTTGTAGGTAAGAAAT--TGTTAATTTATAAATTATCGGTAGCGACACGCACATAATTTAAAATTTTTCACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCACTTTT
droMoj3 scaffold_6540:23323073-23323083 + CACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TTTTTAG--------------------TGATT---AATAATATT-----------------GCAGAGCTCCGTTACGCTTCCAGCCCCTGGTATGTTTTATTCTAAG-------------------------CTAACAGTTCAAATTTCCCGCCAATCACTTTTGTAGCATCGGGCTTCTGTAAGACAGCGTTAAAACGCACTAAAA--------------------GT---------------TACCGAGGTATTTTCAAAAAA-------------------------------------------------AT-GA--------------------------AGT-------ATGGGAAGATTAATTCCTAGT---AAGCCCATATTCAATCTCATATAATCATTTACATACCACACAAGCGAGGCATTTGTAAAGAATTCTTCACCGCGCTCATTTCGCTAAT----TATTGCTGCGGTCTATTTTAGGCGTGTGCGATAGTACAATCAACGAAGCTG---CTGAAAACCCACCCGATTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAAGAATTCTTCACCG..............................................................................................2414.0042110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAAGAATTCTTCAC................................................................................................2312.0022000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAAGAATTCTTCACCG..............................................................................................2212.0021010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCACCGCGCTCATTTC....................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAGGCGTGTGCGATA.........................................2011.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGGCGTGTGCGATAGT.......................................2011.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCGCGCTCATTTCGCTA................................................................................2111.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCGCGCTCATTTCG...................................................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGTACAATCAACGAAGCTG---CT..................2411.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGGCGTGTGCGATA.........................................1911.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTCGCTAAT----TATTGCTGCGG...............................................................2611.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCATTTGTAAAGAATTCTTCAC................................................................................................2711.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAAT----TATTGCTGCGG...............................................................1811.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGAAGCTG---CTGAAAACCCACCC......2711.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAAGAATTCTTCACCG..............................................................................................2011.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAAGCTG---CTGAAAACC...........2011.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAAGAATTCTTCACCGCT............................................................................................2411.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAAGAATTCTT...................................................................................................2011.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATTCTTCACCGCGCT..........................................................................................2011.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCATTTGTAAA...........................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATACCACACAAGCGAGGC....................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAAGAATTCTTCACCGCG............................................................................................2411.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCACACAAGCGAG......................................................................................................................1811.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCTAAT----TATTGCTGCGGT..............................................................2211.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAGAATTCTTCACCGCGCTCAT.......................................................................................2811.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................TACATACCACACAAGCGAGGCATT.................................................................................................................2411.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCAACGAAGCTG---CT..................2011.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAT----TATTGCTGCGGT..............................................................1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAAGAATTCTTCACCG..............................................................................................2511.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCGCGCTCATTTCGC..................................................................................1911.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGTCTATTTTAGGCG..................................................1911.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGTCTATTTTAGGCGTGTGC.............................................2311.0010010
droSim2
TTTTTAG--------------------TGATT---AATAATATT-----------------GCAGAGCTCCGTTACGCTTCCAGCCCCTGGTATGTTTTATTCTAAG-------------------------CTAACAGTTCAAATTTCCCGCCAATCACTTTTGTAGCATTGGGCTTCTGTAAGACAGCGAAAAAACGCACTGAAA--------------------AT---------------TACCGAGGTATTTTAAAAAAA-------------------------------------------------AA-AAAAAC----------------------AGTA-------TGGGAAGATTAATTCCTAGT---AAGCCCGTATTCAATCTCATAAAATCATTTACATACCACACAAGCGAGGCATTTGTAAGGAATTCTTCACAGCGTTCATTTCGCTAAT----TATTGCTGCGGTCTATTTTAGGCGTGTGCGATAGTACAATCAACGCAGCTG---CTGAAAACCAACCCGATTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAT----TATTGCTGCGGTC.............................................................18110.001090100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTCGCTAAT----TATTGCTG..................................................................2316.00650100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAAT----TATTGCTGCGGTC.............................................................2012.00220000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGCTAAT----TATTGCTG..................................................................1912.00211000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCA.................................................................................................1912.00220000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTC.....................................................................................................1912.00211000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT----TATTGCTGCGGTCTA...........................................................1812.00211000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCATTTGTAAGGAAT.......................................................................................................1912.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAT----TATTGCTGCGGTC.............................................................1912.00220000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAGGAATTCTTCACA...............................................................................................1812.00200000000002000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCATTTGTAAGGAATTC.....................................................................................................2112.00220000000000000000
............................................................................................................................................................................................................................................................TATTTTAAAAAAA-------------------------------------------------AA-AAAAAC----------------------AGTA-------TGGGA........................................................................................................................................................................................3011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATCAACGCAGCTG---CTGAAAACC...........2611.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----TATTGCTGCGGTCTATTTTAG.....................................................2311.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTTCGCTAAT----TATTGCTG..................................................................2211.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGCTAAT----TATTGCTGCGGTC.............................................................2411.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGTCTATTTTAGGCGTGTGCG............................................2411.00100000000001000000
.....................................................................................................................................................................................TAAGACAGCGAAAAAACG..........................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCAACGCAGCTG---CTG.................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCAGCTG---CTGAAAAC............1911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATAGTACAATCAACGCAGCTG---CA..................2611.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG---CTGAAAACCAACCCGAC...2211.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTC..................................................................................................1811.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCGCTAAT----TATTGCTGCGGTC.............................................................2511.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTAAT----TATTGCTGCGGTC.............................................................2211.00110000000000000000
........................................TATT-----------------GCAGAGCTCCGTTACGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGGTCTATTTTAGGCG..................................................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATTCCTAGT---AAGCCCGAG.............................................................................................................................................................1911.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCACAGC.............................................................................................2311.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCAACGCAGCTG---CTG.................1911.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTAGGCGTGTGCGATAGTACA....................................2511.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCTAAT----TATTGCTG..................................................................1811.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTCAC................................................................................................2311.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTTTAGGCGTGTG..............................................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATTCTTCACAGC.............................................................................................1711.00100000010000000000
...............................................................................................................................................................................................................................................................TTTAAAAAAA-------------------------------------------------AA-AAAA................................................................................................................................................................................................................................16200.10200000020000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATTCCTAGT---AAGCG.................................................................................................................................................................15120.08100000001000000000
dm3
TTTTAAG--------------------TGATT---AAAAATATT-----------------GCAGAGCTCCGTTACGCTACCAGCTCCTGGTGAGTTTT--TCTAAG-------------------------CTAACAGTTCAAATTTCCCGCCAATCAGTTTTGTAGCAACGAGCATCTGTAAGACAGCGTAAGTAGGCACTGAAA--------------------AT---------------CGCCGAGGTATTTTATAAAAA------------------------------------------------TATGGAATAA----------------------GGTATGACCGATGGGTAGATTAATTCCTGGT---AAGCCCGTATTCAATCT-ATAAAATATTTTACATACCACACAAACGAGGCATTTGTAAGGAATTCTTCACCGCGTTCATTTCGCTAAT----TCTTGCTGCGGTCTATTTTAGGCGTATGTGATAGTACAATCAACGCAGCTG---CTGAATACCCACCCGATTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTCACCG..............................................................................................24157.00570000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000077400000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100013000001001220000000000020000000000100400000000000001105311000000000011210
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTC.....................................................................................................19139.00390000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000001000010010000000000000000001001100000000000000200000000103600000000001012201100000000000022000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCT....................................................................................................19137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000330000000000000000000000000000000000000000010400002030020000000000010100000000001500000000000000201010000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTCTT...................................................................................................21136.00360000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000010000000000100100000000000031200000000001010100000000000500000000000001201331000000010000310
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTCT....................................................................................................20131.00310000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000100000000000000000000000000000200000000100000100000010000000000003201000000000020300301000000000100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTCACCGCG............................................................................................26128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000100000000100001000000000000007010000000000000000000000201002001201100000000100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTATGTGATAGTACAATC.................................22122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009904000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTCA.................................................................................................21121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000001000000000000000000000010100000010100211000000110001002001000011000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTT...................................................................................................20121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000100000000000000000000000100002000000001100000000000010200000000000101000000000012200100000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCACCGCGTTC.........................................................................................27118.001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGCTAAT----TCTTGCTGCGGTCT............................................................25117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCACCG..............................................................................................22117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000001000000000000000000000000000010000000000010000000000000010100000000000200000000000001000010100000000002010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTCACCG..............................................................................................25117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000000001001010000000000020100000000200000000000000000100100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTT...................................................................................................19115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100300000001001000000000000030000000010000000000000001000200100000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATTCTTCACCGCGTTC.........................................................................................21115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000020000015001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTCAC................................................................................................22114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010100002000100000000000000000000000000000000000110000000000020000000000000301000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTCA.................................................................................................22113.00130000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000001010010000000000100000000000002000000000000000012000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCT....................................................................................................18112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000010000000000000110000000000100000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTCACCGC.............................................................................................25112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000100001000000000000010100000000000000000000100001001100100000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCACCGCGT...........................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATT......................................................................................................18110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101000000000001000000000000003000000000001000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCACCGCGTTCATT......................................................................................1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000100000000010000011000000000000000000000000100000000100000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCACCGCG............................................................................................2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000001000100000000012000001001000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTCGCTAAT----TCTTGCTG..................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTCTTCAC................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020000000000000000000000000000000000000000000000000000010000000000001101010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTAAGGAATTCTTCACCGCGTT..........................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000002000000000000000000000000000000000000000000001000000000000000000000000000000000000010001000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTCGCTAAT----TCT.......................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000200000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTC.....................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000011000000011000000000000000000000000100000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTCACCGCG............................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000100000000000000000000000000001000000000000000000000010000000000000000000000000000001010000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTCTTCA.................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000020100000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTC..................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000010000000000000000000000000000000000000000000001000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTCACC...............................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000100000010000000000000000000000000000000000000000010000000100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCACCGCGTTCATT......................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTATGTGATAGTACA....................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000101100001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGAATTCTTCACCGCG............................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAGGAATTCTTCACC...............................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTCAC................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000010000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGTCTATTTTAGGCGTATG..............................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTGCGGTCTATTTTAGGCG..................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTCTTCACCGCG............................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGTAAGGAATTCTTC..................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000200000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CTGAATACCCACCCGAT...1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGTCTATTTTAGGCG..................................................2114.0040000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTTGTAAGGAATTCTTCACCG..............................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTGTAAGGAATTCTTCACCGC.............................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGAATTCTTCACCGCGTTC.........................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGGCGTATGTGATAGTAC.....................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
TTCTTAG--------------------TA-AT---AATAATATT-----------------GCAGAGCTCCGTCACGCTTCCAGCGCCTGGTGAGTTTAA-TCTAAG-------------------------CAAACAATTCAAATTTCGCGCCACTCGGTTTTGTAGCATTGAGCTTCTGTAAGACAGCGTA-AAACGCACTGAAA--------------------AT---------------CACCGAGGA-TTTTGTAAAAA------------------------------------------------ATT-GATTGA----------------------AGTATGACCGATGGGAAGATTTATTCCTAGT---ATGACCGTATTCGTTCCCATAAAATATTTTACATTCCACACAAACGAGGCATTTGTTCAGAATTCCTCACCGCGTTTAATTCGCTAAT----TTTCGCTGTGGTCTATTTTAGGCGTGTCTGATAGTACAATCAACGCAGCTG---CTGAAGGTCCATCCGATTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGAATTCCTCACCGCGTTTA........................................................................................2612.0020000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCTGTGGTCTATTTTAGGCG..................................................2411.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGCGTGTCTGATAGTACAATC.................................2411.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAATTCCTCACCGCGTTTAAT......................................................................................2611.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATAGTACAATCAACGCAGCTG---C...................2611.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCAGCTG---CTGAAGGTCCATCC......2511.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCAGAATTCCTCACCGCGTTTAA.......................................................................................2711.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGCTG---CTGAAGGTCCATCCGA....2611.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTCAGAATTCCTCACCGCGTT..........................................................................................2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCTAAT----TTTCGCTGTGGTCT............................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTAAT----TTTCGCTGTGGTCTA...........................................................2311.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTAATTCGCTAAT----TTTCGCTGTG................................................................2711.0011000000
droYak3
TTTTTAG--------------------TA-AT---AACAATATT-----------------GCAGAGCTCCGTCACGCTTCCAGCTCCTGGTGAGTTTT--CCTTAG-------------------------CAAACTATTCAATTTTCGCGCCAGTCAGGGTTGCAGCATTCAGCTTCTGTAAGACAGCGA-AAAACGCACTAAAA--------------------AT---------------CAACGAGGTATTTTGAAAAAG-------------------------------------------------TT-GAAGGA----------------------AGTATGACCGATGGCAAGATTTATTCCTAGT---AAGCCCGTATTCGTTCTCATAAAATATTTTACATTCCACACATGCGAGCCACTTGCACAGAATGCCTCACCGCGTTTAATTCGCTAAT----TTTCGCAGTGGTCTATTTTAGGCGTGTCTCTTAGTACAACGAACGCAGCTG---CTGAAAACCCAACCGATTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....AG--------------------TA-AT---AACAATATT-----------------GCAGAGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00211000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGAACGCAGCTG---CTGA................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTCGCTAAT----TTTCGCAGTGGTCT............................................................2711.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAAT----TTTCGCAGTGGTC.............................................................2011.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CTGAAAACCCAACCGAT...1811.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGTCTATTTTAGGCGT.................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTAAT----TTTCGCAGTGGTCTATT.........................................................2611.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTG---CTGAAAACCCAACCGA....2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCTG---CTGAAAACCC..........1811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCCACACATGCGAGCCACTTG...............................................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGAATGCCTCACCG..............................................................................................1811.00100001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGCGAGCCACTTGCACAGA.........................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGGCGTGTCTCTTAGTACAAC..................................2611.00100000010000
.....AG--------------------TA-AT---AACAATATT-----------------GCAGAGCTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGCTAAT----TTTCGCAGT.................................................................2011.00101000000000
droEug1
TAATA------------------------ACC---AATTATATT-----------------ACAGAACTCTGTCACACTTCCAGTTACTGGTAAGTTTA--TCTTAA-------------------------CAACGAATTCAAATATCCCGCGACTGAGTGTTGCAGCAACTAACTTTTTTAAGACTACTAGAAAATGGGCTAAAA-----------------------------------------------------------------------------------------------------------------TAT----------------------AGTATGACCGTT---CAGATATATTTGCAAT---AAGGCCGTATT----GTCATAAAATATTTGACATCCCACACAATCGCATCATTTGTACAGAATTTTTCAACGCGTTCATCTCGCTTAT----T-TTTTGGTGTTCTATTTTAGGCGTGTCAGATAGTACAATCAACGCAGCTGCAGCTGAAAACCCAGTTGATACCSizeHit CountTotal NormTotal
No Reads
droBia1
TCCTAAGGT--------------TATA--TAC---ACTAA-TTT-----------------TTAGAACTCTGTCACGCTTCCTGCCAATGGTA-GTTTC--TCTGAA-------------------------CGAGCAAATCGAATTTGGCGCCCATTAGTTTTGCAGCAGCGGGCTTTTGTAAGAGCACTT------------AGT--------------------ATGACCGTTTCGAGATGTC--GATGGATTCCAGC--GATTGCTTACGTTTGATTACGTTTCCTTATGGCTGCTTACTTACGGTCGCTTTCGTTCAAAAAC------------AAAAACA------TCGTTAACATCGT------------TTTTCTCCACCTCCAAT-TCAAAAAATATTCGACACTCA---AAACCG-CTCAT------------TTTCAACGCGTTC-----TCCAAA----TCCTACCGTGTTCTATTTTAGGCGTGTCAGGTACTACAATCAACGCAGCTGCTGCTGAAACCCCACCCGTTTCCSizeHit CountTotal NormTotal
No Reads
droTak1
TTTAAAGCC--------------TATA--AAC---ACCAATGTT-----------------TCAGAACTCCGTCACACTTCCAGCGACTGGTAAGTTTC--CCTGAA-------------------------CCAGCAATTTGAATTTCGCGCCATTCAGTTTCGTAGCAAATGGCTTTTGTAAGACTACTTGAAACCACCCCGAAA--------------------TG---------------TTCGGAAAAATATTAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTGTAA--------------------TAAAC---AATAATATT-----------------GCAGAACTCCGTGACGCTTCCAGTTAGTGGTAAGTTCC--TCTGAA-------------------------CAAGCAATTCAAATTTCGCGGCATTCAG--------CATTTG----------GATTACTCAAAAATGCGCTAATG--------------------TC---------------CGCCAAA-------CA---------------------------------------------------------AAAAAT----------------------TGTATGACCCTTGCAAAGCAGTATTTTTAGT---GTGACCATGTTGGGTCTCACAAAATATTTATCATCCCACAAAATCAAGTCATTTGTACAGAATTTTTCAACGCGTTCACCTCGCTAATATTAATTTACGGTGATCTATTTCAGTCGTGTCTAATAGTTCCACTAACGCAGCTG---CCGTAGCACCGACCGATTCCSizeHit CountTotal NormTotal
No Reads
droRho1
TTTATAA--------------------TAAAC---AATAATATT-----------------TCAGAACTCCGTGACACTTCCAGTTAGTGGTAAGTTCA--TTTAAA-------------------------CAAACCATTTGAATTTCGCGCCATTCAT------------------CATTCAGACAACTCAAAAATGCGCTAAAT--------------------GC---------------CTCTCTGAA--------------------------------------------------------------------AT----------------------TGTAGGACCGTTGCAAAGATCCATTTTTAGT---AGGACCATATTAATTCTCATGAAACATTTTACGCACGGCACAATCAATTCATTTGTACTGAATTTCTCGAAGCGCTCATCTCGCTAAA----T-CTACGGTGATCTATTTCAGGCGTATCTGATAGTACCATAAACGCAGCTC---CCGATACCACGACAAAACCCSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTTATTT----------AATCA---TAAGC---AATTCTATT-----------------GCAGACATCTGTTACACTCCCCGTTGCTGGTAAGTTTT--TCAGAT-------------------------CGAACAATTCGAATTTCGCGCCA-TCAGTTTTGTAGCAATTTTTGTTTGTGAGGCTGCTCGCATTTCTGTTAAGAACTTTTTTAGCGAAAGCGCCTC------------------------------------------------------------------------------------TATCGGACAAAAGATGTCCTATCGATAAAGC------AATCGAAGGAGTGATTTTTATCGAACAATCTATCCAGCTC-------------------------------------TAATTTGTACAGAATTTTTCAA--CGTTTAAGTCGCTAAT----T-TTGCTGCGGTCTATTTTAGGCGTGCCAGAAAGTCCAATCAACGCAGCTG---CTCAGAACCCAACAGATTCCSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTGTT--------------------TTATTAATATCTGTATT-----------------GCAGAATTCCGTGACTTTGCCTGTTACTGGTAAGTTGT--TTT--------------------------------CAGATTAAATTTCGCGCCAAGCGATTTTATATCATTTGGCTTTTGAGAGTGAGCATTGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATCTCAACGTGTTCACATCGTTG-T----TCTAATTGTGGTCCATTTTAGGCGTGTCTGCTAATAAAAGCAACGCTTCTG---GCGAAGCTGCGAGTGACTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTCAACGTGTTCACATC....................................................................................2112.002020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAACGTGTTCACATCG...................................................................................2012.002000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATCGTTG-T----TCTAATTGTGGT..............................................................2611.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTTCTG---GCGAAGCTGCGAGTGA....2511.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCAACGTGTTCACATC....................................................................................2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGCGTGTCTGCTAATAAAAGCAAC..............................2711.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGGTCCATTTTAGGCGTG................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGTGGTCCATTTTAGGC...................................................2211.001010000
droBip1
TTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTCTCAACGTGTTCACATCGCTG-T----TCTAATTGTGGTCCATTTTAGGCGTGTCTGATAATAAAAGCAACGCTTCTG---GTGAAGCTGCAAGTGACTCCSizeHit CountTotal NormTotal
No Reads
dp5
TAATTTGTTTCACTGAAATAAGCCAA---ATA---CATCTTATT-----------------GCAGAATTCCGCTACATTGCCTGTTACAGGTCTGTATAC----ACC-------------------------CTAAGCATTTGAAATTTGCGCCAAGAATATTTGGCGTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGTTTCACC-----GAAATAAGCCAA---ATA---CATCTTATT-----------------GCAGAACTCCGCTACATTGCCTGTTACAGGTCTGTATAC----ACC-------------------------CTAAACATTTGAAATTTGCGCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTATTAA--------------------TTATT---TTTAATTTTTGTTTTATTTTATCTTATTAGAATTCTGTAACGCTGCCAGTTGTAGGTAAGAAAT--TGTTAATTTATAAATTATCGGTAGCGACACGCACATAATTTAAAATTTTTCACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCACTTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
CACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 12:03 AM