dse_1476

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCGACGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTCCACATGGAATGCTTGTGAATCTCCGTTCGTTAATCCATATCCCATTCGATTTGCAGACCAAGAACTCCTTGGCCCAACAGTCTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCACCGTCCAGAAGACCATTCCCTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG ************************************************************************************************************************************.....((..................((..((((((...((.....))..))))))..))..)).***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	V115 head	M054 female body	V113 male body
..........................AATGGAAAGCTTTTGTGGA..............................................................................................................................................................................................................	19	0	1	3.00	3	1	1	0	1
....................................TTTTGTGGAATTTGGTAGTGC..................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1
........................GCAATGGAAAGCTTTTGTGG...............................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................CACCGTCCAGAAGACCATTCCCTTGG.......................................	26	0	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................CCATTCCCTTGGAGCAGCC................................	19	0	1	1.00	1	1	0	0	0
......................................................................................................................................AACAGTCTCCAAATGGGATCGCCAAGA..........................................................................................	27	0	1	1.00	1	0	0	1	0
..........GATGAAGTTTCGTGGCAATGG............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
..................................................................................................................................................ATGGGATCGCCAAGAAAGT......................................................................................	19	0	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................GCTGAAGTACCACGTCCTGC......	20	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................ATTCCCTTGGAGCAGCCGA..............................	19	0	1	1.00	1	0	1	0	0
......................................................................................................................................................GATCGCCAAGAAAGTGCTGCCCGC.............................................................................	24	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................GCCAAGAAAGTGCTGCCC...............................................................................	18	0	1	1.00	1	1	0	0	0
..............................................................................................................................................CCAAATGGGATCGCCAAGAAA........................................................................................	21	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................GCCAAGAAAGTGCTGCCCG..............................................................................	19	0	1	1.00	1	1	0	0	0
.................................................................................................................................................AATGGGATCGCCAAGAAAGTGC....................................................................................	22	0	1	1.00	1	1	0	0	0
..................................................................................................................................................ATGGGATCGCCAAGAAAGTGC....................................................................................	21	0	1	1.00	1	1	0	0	0
..........................AATGGAAAGCTTTTGTGGAATTTGAC.......................................................................................................................................................................................................	26	2	1	1.00	1	1	0	0	0
...........................ATGGAAAGCTTTTGTGGAATTTGACC......................................................................................................................................................................................................	26	3	1	1.00	1	1	0	0	0
................................................................................................................................................AAATGGGATCGCCAAGAAAGTGC....................................................................................	23	0	1	1.00	1	1	0	0	0
....................................................................................................................................................................................CTACAGCACCGTCCAGAA.....................................................	18	0	1	1.00	1	1	0	0	0
........................................CTGGAATTTGGCAGTCCTCC...............................................................................................................................................................................................	20	3	9	0.67	6	0	1	3	2
........................................CTGGAATTTGGCAGTCCTCCA..............................................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0
.......................GGCAATGGAAGGCGTTTG..................................................................................................................................................................................................................	18	2	15	0.47	7	0	0	7	0
...............................................................TGGTAATCTTGTGAATCTCC........................................................................................................................................................................	20	3	4	0.25	1	0	0	1	0
...............................................................TGGAAATCTTGTGAAACTCC........................................................................................................................................................................	20	3	16	0.19	3	0	0	3	0
..........................................GGAATTTGGCAGTCCTCC...............................................................................................................................................................................................	18	2	6	0.17	1	0	0	1	0
......................................................................CTTGTGAAACTCCGTTGCT..................................................................................................................................................................	19	3	11	0.09	1	0	0	0	1
...........................................CAAGTTGGTAATGCTCCACA............................................................................................................................................................................................	20	3	13	0.08	1	0	0	1	0
...........................................................................................................................CTCCTTGGCCAAACCGTGT.............................................................................................................	19	3	20	0.05	1	1	0	0	0

GGCTGCGGCTCTACTTCAAAGCACCGTTACCTTTCGAAAACACCTTAAACCATCACGAGGTGTACCTTACGAACACTTAGAGGCAAGCAATTAGGTATAGGGTAAGCTAAACGTCTGGTTCTTGAGGAACCGGGTTGTCAGAGGTTTACCCTAGCGGTTCTTTCACGACGGGCGGTCGTCGATGTCGTGGCAGGTCTTCTGGTAAGGGAACCTCGTCGGCTTAGACGACTTCATGGTGCAGGACGGCGACC ***************************************************.....((..................((..((((((...((.....))..))))))..))..)).************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V113 male body
.........................................ACCTTAAACCGTCAGGAGG...............................................................................................................................................................................................	19	2	3	2.67	8	8	0
........................................GACCTTAAACCGTCAGGAGG...............................................................................................................................................................................................	20	3	9	0.33	3	3	0
..........................................CCTTAAACCGTCAGGAGG...............................................................................................................................................................................................	18	2	6	0.33	2	2	0
........................................GACCTTAAACCGTCAGGAG................................................................................................................................................................................................	19	3	20	0.25	5	5	0
.........................................ACCTTAAACCGTCAGGAG................................................................................................................................................................................................	18	2	8	0.25	2	2	0
.........................................................................................................................................................GCGGTTCCTTCATGGCGGGC..............................................................................	20	3	7	0.14	1	0	1
..................................................................................................................................................................................................................................GACGTCATGGTGCAGTACGT.....	20	3	7	0.14	1	1	0
...................................................................................................................................................................................................GTTCTGGCAAGGGAACCT......................................	18	2	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_6:2283976-2284226 -	dse_1476	CCGACGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTC-C--ACATGGAATGCTTG---TGAA-------TCTCCGTTCGTTAATCCATA------------TCCC------------ATT-CGATTTGCAGACCAAGAACTCCTTGG---CCCAACAGT---CTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG
droSim2	3r:2099961-2100211 -		CCGACGCCGAGATGAAGTTCCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTC-C--GCATGGAATGCTTG---TGAA-------TCTCCGTTCGGTAATCAATA------------TCCC------------ATT-TGATTTCCAGACCAAGAACTCCTTGG---CCCAGCAGT---CTCCAAATGGAATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG
dm3	chr3R:2198823-2199073 -		CCGAAGCCGAGATGAAGTTCCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTC-C--ATATGGAATGCTTG---TGAT-------TCTCCGTTCGGTAATCTGTA------------TCCC------------ATT-CGATTTCCAGACCAAGAACTCCTTGG---CCCAGCAGT---CTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCTAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG
droEre2	scaffold_4770:2444337-2444587 -		CCGACGCCGAGATGAAGTTCCGCGGTAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTG-C--TCATGGAATGCTTG---TGGA-------TCTCCGCTTTATAATCCATA------------TCTT------------ATT-CGAATTTCAGACGAAGAACTCCTTTG---CCCAGCAGT---CTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCA---CCGCCCAGAAGACC--------ATCC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAATACCACGTCCTGCCGCTGG
droYak3	3R:18123279-18123523 -		GCGACGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTACTGCTC-C--ATATAGAATGCTTA-------------------------TAATACATATCTAACATA---ACTC------------ATT-CAAATTCCAGACCAAGAACTCCTTGG---CCCAGCAGT---CTCCAAATGGTATCGCCAAGAATGTGCTGCCCGCCAGCAGCTACAGCA---CCGCCCAGAAGACC--------ATAC-------------------------------------C--------CTTGGAGCAGCCGAGTCTGCTGAAATACCACGTCCTACCGCTGG
droEug1	scf7180000409504:28462-28703 -		CCGAAGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTATGGAATTTGGTAAGAATA------------TTTTCG---TAAA-------CGAGTCCAATATAATCCACA------------TCCC------------AAT-CTCGTTTTAGACGAAGAGTTCGCTTG---CGCAGCAAT---CTCAAACTGGGATCGCGAAAAGAGCTCTCCCCGCAAGCAGCTACAGCC---CCGCCAAGAGCAAT--------CCGA-------------------------------------C--------CTTGGAACAGCCAAATCTGTTGAAGTACCATGTTTTGCCGTTGG
droBia1	scf7180000302155:2505283-2505531 +		CCGACAACGAGATGAAGTTCGGACGCAACGGAAAGCTTTTATGGAACCTGGTACGCTCTTGC----TGTTATACTCC---TGCA-------TCTGCCCTTTACAGCCCGCC------------TT-T------------AAT-CGCATTCCAGACCAAGAGCTCGCTTG---GTCAGCAGT---CCCAGAATGGCATTGCCAAGAAGGCGCTACCCGCCAGCAGCTACAGCA---CCGCCCAGAAAATC--------GCAG-------------------------------------C--------CTTGGAGCAGCCAAACCTCCTGAAATACCACGTTCTGCCGCTAG
droTak1	scf7180000415261:456584-456825 +		CCGACGCCGAGATGAGGTTCGGAGGCAATGGAAAGCTTTTATGGAACTTGGTAACACCC-T--TAATGCTATACTCG---TAAA-------ACTGCCTAC--TA-------------------ATTC------------AAT-TGCATTCCAGACCAAAAGCTCGCTTG---CTCAGCAGT---CTCAAAATGGGATCGCCAAAAGAGTGCTAACCGCCAGCAGCTACAGCA---CCGCAAAGAAGATT--------TCGA-------------------------------------C--------CTTGGAGCAGCCAAACCTCCTCAAGTACCATGTCCTGCCGCTCG
droEle1	scf7180000491278:936568-936819 -		--GACACCGAGATGCAGTTCCCTCGCAATGGAAAGCTTTTGTGGAATTTGGTAAGATATTGC-------CAAACTAG---TAAA-------G--GTTTACCATAATTCACA------------TCCCAGTGCAATTCCAATT-CCAATTCCAGACAAAGAACTCGCTGA---CGCAGCAGT---CTCAAAATGCGATTGCCAAAAGGGTGCTGCCCGCCA---GTTACAGTA---CCGCTGTGAAAAGT--------GCGC-------------------------------------C--------ATCGGAGCAGCCGAATCTCCTGAAGTATCATGTTCTGCCGCTGG
droRho1	scf7180000779776:39463-39706 +		GCGACGCCGAAATGAAGTTCCCTAGGAATGGAAAGCTTTTGTGGAATTTGGTGAGATCTTGC-------AGTACTCG---TGAA-------ACAGCCTTCTACAATCCACA------------TCCC------------ATT-CGCATTCCAGACAAAGAGCTCGCTGG---CGCAGGAGT---CTCAAAATGGGATCGCCAAAAGGGTGCTACCCGCCA---GATACAGCA---CCGCTGTAAAAAGT--------GCAA-------------------------------------C--------CTCGGAGCAGCCAAACCTCCTGAAGTACCATGTTCTGCCGCTCG
droFic1	scf7180000453910:556534-556774 -		GCGACGCCGAGATGAAGTTCAGTAGAAATGGAAAGTTGTTATGGAACATGGTAAGCACCCGC--T-----------G---TAAA-------TCTTGCGTTCATATCCTAAA------------TCTG------------AAG-TGATTTTCAGGCGAAGAGCTCCCTAG---CGCAGCCGT---CACAAAATGCGGTGGCCAAAAAGGTGCTACCCGCTA---GCTGCAGCACAACAACAAGGGATAAT--------TCGA-------------------------------------C--------CTCCAGTCAGCCGAACCTGTTGTCCTACCATGTTTTGCCGCTGG
droKik1	scf7180000298237:306-548 -		GCGACATCAACATGAGGTTCCCCAACAATGGAAAGGTTTTATTAAATATGGCAAGTGTTTGGATTGCACCTTTA--ACTTAACA--------TA--GCCCAATAATCTCCT------TTACCATTCC------------ATT-CGGCTTAAAGACAAATGCACCGCTTC---TTCAACGA------------------ACGAAACAACTGCTTCCAGCTA---GATATAGCA---GCACCAAGGAA-TC--------GTTGTCGG---------------------------------A--------TCCGAAGCAGTTAAATCTTTTGCCTTACCATGTATTGCCGCTTA
droAna3	scaffold_13258:1186160-1186389 +		C-------ATAATGAGGTTTCCTAAGAATAGAAAGGTCTTTTGGAATTTGGCAAGTTCTTGG----AAAAACGA--AT---ACA-------A--CCATATTTTAGTAAAAA------------TTAT------------TTT-ATATTTTTAGGCCAAAAGTTCTGTCT---CACAACAGA---CGCAAAACACTTTCACCAACCAATTGTTTTTGGCCA---GATTTAGCAGCACCTTAAAA---AGT-----------------------------------------------------------GCAAAGCAGACAAATCTCTTGCCTTACCATGTCTTACCACTTG
droBip1	scf7180000395365:20624-20857 -		CCA---GTGAAATGAGGCTTCCTAAGAATAGAACGGTCTTTTGGAACTTGGCAAGTTATTGA----GCAAGTGA--AT---TAA-------ACTATTTT---TAGTAGAAA------------TAAC------------TTTTGTTTTTTTAGGCCAAAAGTTCCCTCC---CCCAAAAGA---CACAAAACATTATTTCTAACCAAATTTTGTTGACGA---GATTTAGCA---GCACGAAAAAGAGT-----------------------------------------------------------TCCAAACAGCCAAATCTTTTGCCTTACCATGTCCTGCCTCTTG
dp5	4_group4:6502191-6502471 -		CCAACGCCGAAATGCGATTTCTGGGCAATGGAAAAGTGTTATGGAACTTGGCAAGTGATTA--TTATAAATTGA--ATTGAAAA-------TCTATTTCCAATAACTATCA------------TCTCAATGCA------A---TTTCTTACAGACAAAGAGCTCCATCA---CACATCAGT---CGCCCAATGCGCTTGCCAA---GCTGCATCCCGCCA---GCTACAGCA---GCAGGAAGGAACCCCCCGCACCATCATCAGAGCCT------------------A-----AGTCTTCTAAAGCTGCACAGAAACAAAATCTCTTGACTTACCACGTCCTACCGCTTG
droPer2	scaffold_16:354099-354380 +		CCAACGCCGAAATGCGATTTCTGGGCAATGGAAAAGTGTTATGGAACTTGGCAAGTGATTA--TTATAAATTGA--ATTGAAAA-------TCTACTTCCAATAACTATCA------------TCTCAATGC-------AAT-TTTCTTACAGACAAAGAGCTCCATCA---CACATCAGT---CGCCCAATGCGCTTGCCAA---GCTGCATCCCGCCA---GCTACAGCA---GCAGGAAGGAACCCCCCGCACCATCATCAGAGCCT------------------A-----AGTCTTCTAAAGCTGCACAGAAACAAAATCTCTTGACTTACCACGTCCTACCGCTTG
droWil2	scf2_1100000004521:6627000-6627248 -		CAAACGTCGAGATGAGATTCCTTAACAATGGACGTGTTTTCTGGAATTTGGTAGTTATTCAT--CA---TTT-----------TTTTTTACTTAATGCCCTTTAATTAACC------------TCAC--------------C-GCTTCTTTAGACCAAGAATTCCATGA---ATTATCAGT---CGGGCAATGCCATCGTCAG---GCTACTCCCTGCCA---GCTATAGCA---ACAAA------AGCTCCGATCCTCCAGCCGAAC------------------------------C--------CAGAGAGAAACAAAATCTATTGACCTACCATGTGTTGCCCCTGA
droVir3	scaffold_12963:2405240-2405491 +		CCAAAGCCGAGATGAGATTGCTGAACAGCAGAGGTGTCTTCTGGAATTTGGTGAGTAATTGC--CA---ACT-----------ATG--AG-CCTAATC--------CTGAC------------TAAC------------ATT-CGCCTTACAGACCAAATGTTCCATCAAAGCAAATCAAA---CTTCGAATGTTCTTGTCAA---GCTGCTGCCTGCCA---GCTTTGGCA---GCAAA------AGTTCTGAGCAGTCGCAAGTGCCA------------------C-----AA------AATGGGGCACCAAAGCAGAATCTGTTGAAATACCATGTTTTGCCACTGA
droMoj3	scaffold_6500:12562659-12562950 +		ACAAATCCAAAATGAGGATATTAAAGAATGGACGAGTTTTCTGGAATTTAGTAAGCAAC-A--TTAG--GATATTAAAAGCGAA-------TCTATATTTATTAATATATA------------TATATATA--------ATA-TCCCCAACAGACCAAAGGCTCTATTAACACCAAGGAAG---CATCGGATATTCTTGTGA---AACTGATGCCTGCCA---GCTATGCCAGCAAAATTA---------GCGAGAAACCGGAGAAATCGGAGAAACCCGGAGAAACCGGAGAGAA------GAA--GAAGCAGCAGCAAACCCTTTTAAAGTATCCTGTTCTGCCACTGA
droGri2	scaffold_15126:2609520-2609757 -		GCGACGCCGAGATGAGACTGCTGAGTAATAGAGGTGCCCTCTGGAATTTGGTAAATCTCTGT--CA---AGT-----------ATA---------TC-----TCATGAATACCACATTTA---ACGC-----A------TTT-CCTTTTGCAGACGAAAAGCTCACTGAAATCTAATCAAAGCGCTTCGAATGGGCTCGTTAA---ACTGCTGCCTGCCA---GCTACAGCA---GCGAA------AGT--------GCTG-------------------------------------C--------TGAGCCAAGGCAGAATCTATTGAAGTTTCATGTGCTGCCATTGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CCGACGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTC-C--ACATGGAATGCTTG---TGAA-------TCTCCGTTCGTTAATCCATA------------TCCC------------ATT-CGATTTGCAGACCAAGAACTCCTTGG---CCCAACAGT---CTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................AATGGAAAGCTTTTGTGGA..................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	1	1
....................................TTTTGTGGAATTTGGTAGTGC......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
........................GCAATGGAAAGCTTTTGTGG...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................CA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGG.......................................	26	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................CC--------ATTC-------------------------------------C--------CTTGGAGCAGCC................................	19	1	1.00	1	0	0	1	0
...............................................................................................................................................................................AACAGT---CTCCAAATGGGATCGCCAAGA..................................................................................................................................................	27	1	1.00	1	1	0	0	0
..........GATGAAGTTTCGTGGCAATGG................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGT..............................................................................................................................................	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................GCTGAAGTACCACGTCCTGC......	20	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................ATTC-------------------------------------C--------CTTGGAGCAGCCGA..............................	19	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................GATCGCCAAGAAAGTGCTGCCCGC.....................................................................................................................................	24	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................GCCAAGAAAGTGCTGCCC.......................................................................................................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................CCAAATGGGATCGCCAAGAAA................................................................................................................................................	21	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................GCCAAGAAAGTGCTGCCCG......................................................................................................................................	19	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................AATGGGATCGCCAAGAAAGTGC............................................................................................................................................	22	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGTGC............................................................................................................................................	21	1	1.00	1	0	0	1	0
..........................AATGGAAAGCTTTTGTGGAATTTGAC...........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...........................ATGGAAAGCTTTTGTGGAATTTGACC..........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
............................................................................................................................................................................................AAATGGGATCGCCAAGAAAGTGC............................................................................................................................................	23	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................CTACAGCA---CCGTCCAGAA..........................................................................................................	18	1	1.00	1	0	0	1	0

droSim2

CCGACGCCGAGATGAAGTTCCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTC-C--GCATGGAATGCTTG---TGAA-------TCTCCGTTCGGTAATCAATA------------TCCC------------ATT-TGATTTCCAGACCAAGAACTCCTTGG---CCCAGCAGT---CTCCAAATGGAATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................TCCGTGGCAATGGAAAGCTTTTGTG....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TCCAAATGGAATCGCCAAGAAAGTGC............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................TTTCCAGACCAAGAACTCCT.........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATTTCCAGACCAAGAACTCCT.........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CT..........................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

dm3

CCGAAGCCGAGATGAAGTTCCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTC-C--ATATGGAATGCTTG---TGAT-------TCTCCGTTCGGTAATCTGTA------------TCCC------------ATT-CGATTTCCAGACCAAGAACTCCTTGG---CCCAGCAGT---CTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCTAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................AAATGGGATCGCCAAGAAAGTGCTG..........................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGTGC............................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGC........................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGTGCT...........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTCCAAATGGGATCGCCAAGAAA................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAGCTACAGCA---CCGTCCA.............................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................AAATGGGATCGCCAAGAA.................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CAGAAGACC--------ATTC-------------------------------------C--------CTTGGA......................................	20	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................CTACAGCA---CCGTCCAGAAGA........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGCTAGCAGCTACAGCA---CCGTCCAGAAGACC--------ATTC-------------------------------------.....................................................	35	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAG...................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................TCGCCAAGAAAGTGCTGCCCGCTAGCAGC..............................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AATGGAAAGCTTTTGTGGA..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CCAAATGGGATCGCCAATGG.................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCGACGCCGAGATGAAGTTCCGCGGTAATGGAAAGCTTTTGTGGAATTTGGTAGTGCTG-C--TCATGGAATGCTTG---TGGA-------TCTCCGCTTTATAATCCATA------------TCTT------------ATT-CGAATTTCAGACGAAGAACTCCTTTG---CCCAGCAGT---CTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCCAGCAGCTACAGCA---CCGCCCAGAAGACC--------ATCC-------------------------------------C--------CTTGGAGCAGCCGAATCTGCTGAAATACCACGTCCTGCCGCTGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGT..............................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0
........................GTAATGGAAAGCTTTTGTG....................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
....CGCCGAGATGAAGTTCCGC........................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0	0
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGTGC............................................................................................................................................	21	1	2.00	2	0	1	0	0	0	1	0
........................................................................................................................................................GACGAAGAACTCCTTTG---CCCAGCA............................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................CCAAGAAAGTGCTGCCCGCC....................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........................GTAATGGAAAGCTTTTGTGGAATTTGAC...........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........................AATGGAAAGCTTTTGTGGA..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..............................GAAAGCTTTTGTGGAATTTG.............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................CTACAGCA---CCGCCCAGAAGACC--------..............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATACCACGTCCTGCCGCTG.	19	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................ATGGGATCGCCAAGAAAGTGCT...........................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
................................AAGCTTTTGTGGAATTTGAC...........................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0
..................................GCTTTTGTGGAATTTGAC...........................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0	0

droYak3

GCGACGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTGTGGAATTTGGTACTGCTC-C--ATATAGAATGCTTA-------------------------TAATACATATCTAACATA---ACTC------------ATT-CAAATTCCAGACCAAGAACTCCTTGG---CCCAGCAGT---CTCCAAATGGTATCGCCAAGAATGTGCTGCCCGCCAGCAGCTACAGCA---CCGCCCAGAAGACC--------ATAC-------------------------------------C--------CTTGGAGCAGCCGAGTCTGCTGAAATACCACGTCCTACCGCTGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................CTCCAAATGGTATCGCCAAGAATGTGCT...........................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................CCAAATGGTATCGCCAAGAATGTGCT...........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................GTGGCAATGGAAAGCTTTTGTGGA..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................AATGGAAAGCTTTTGTGGAATTTGACC..........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................GGCAATGGAAAGCTTTTGT.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................GG---CCCAGCAGT---CTCCAAATGGT............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................ATATAGAATGCTTA-------------------------TAATACAT.................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................TACAGCA---CCGCCCAGAAGA........................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GACGCCGAGATGAAGTTTC..........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......CGAGATGAAGTTTCGTGGC.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

CCGAAGCCGAGATGAAGTTTCGTGGCAATGGAAAGCTTTTATGGAATTTGGTAAGAATA------------TTTTCG---TAAA-------CGAGTCCAATATAATCCACA------------TCCC------------AAT-CTCGTTTTAGACGAAGAGTTCGCTTG---CGCAGCAAT---CTCAAACTGGGATCGCGAAAAGAGCTCTCCCCGCAAGCAGCTACAGCC---CCGCCAAGAGCAAT--------CCGA-------------------------------------C--------CTTGGAACAGCCAAATCTGTTGAAGTACCATGTTTTGCCGTTGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCGACAACGAGATGAAGTTCGGACGCAACGGAAAGCTTTTATGGAACCTGGTACGCTCTTGC----TGTTATACTCC---TGCA-------TCTGCCCTTTACAGCCCGCC------------TT-T------------AAT-CGCATTCCAGACCAAGAGCTCGCTTG---GTCAGCAGT---CCCAGAATGGCATTGCCAAGAAGGCGCTACCCGCCAGCAGCTACAGCA---CCGCCCAGAAAATC--------GCAG-------------------------------------C--------CTTGGAGCAGCCAAACCTCCTGAAATACCACGTTCTGCCGCTAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGACGCCGAGATGAGGTTCGGAGGCAATGGAAAGCTTTTATGGAACTTGGTAACACCC-T--TAATGCTATACTCG---TAAA-------ACTGCCTAC--TA-------------------ATTC------------AAT-TGCATTCCAGACCAAAAGCTCGCTTG---CTCAGCAGT---CTCAAAATGGGATCGCCAAAAGAGTGCTAACCGCCAGCAGCTACAGCA---CCGCAAAGAAGATT--------TCGA-------------------------------------C--------CTTGGAGCAGCCAAACCTCCTCAAGTACCATGTCCTGCCGCTCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--GACACCGAGATGCAGTTCCCTCGCAATGGAAAGCTTTTGTGGAATTTGGTAAGATATTGC-------CAAACTAG---TAAA-------G--GTTTACCATAATTCACA------------TCCCAGTGCAATTCCAATT-CCAATTCCAGACAAAGAACTCGCTGA---CGCAGCAGT---CTCAAAATGCGATTGCCAAAAGGGTGCTGCCCGCCA---GTTACAGTA---CCGCTGTGAAAAGT--------GCGC-------------------------------------C--------ATCGGAGCAGCCGAATCTCCTGAAGTATCATGTTCTGCCGCTGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCGACGCCGAAATGAAGTTCCCTAGGAATGGAAAGCTTTTGTGGAATTTGGTGAGATCTTGC-------AGTACTCG---TGAA-------ACAGCCTTCTACAATCCACA------------TCCC------------ATT-CGCATTCCAGACAAAGAGCTCGCTGG---CGCAGGAGT---CTCAAAATGGGATCGCCAAAAGGGTGCTACCCGCCA---GATACAGCA---CCGCTGTAAAAAGT--------GCAA-------------------------------------C--------CTCGGAGCAGCCAAACCTCCTGAAGTACCATGTTCTGCCGCTCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCGACGCCGAGATGAAGTTCAGTAGAAATGGAAAGTTGTTATGGAACATGGTAAGCACCCGC--T-----------G---TAAA-------TCTTGCGTTCATATCCTAAA------------TCTG------------AAG-TGATTTTCAGGCGAAGAGCTCCCTAG---CGCAGCCGT---CACAAAATGCGGTGGCCAAAAAGGTGCTACCCGCTA---GCTGCAGCACAACAACAAGGGATAAT--------TCGA-------------------------------------C--------CTCCAGTCAGCCGAACCTGTTGTCCTACCATGTTTTGCCGCTGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCGACATCAACATGAGGTTCCCCAACAATGGAAAGGTTTTATTAAATATGGCAAGTGTTTGGATTGCACCTTTA--ACTTAACA--------TA--GCCCAATAATCTCCT------TTACCATTCC------------ATT-CGGCTTAAAGACAAATGCACCGCTTC---TTCAACGA------------------ACGAAACAACTGCTTCCAGCTA---GATATAGCA---GCACCAAGGAA-TC--------GTTGTCGG---------------------------------A--------TCCGAAGCAGTTAAATCTTTTGCCTTACCATGTATTGCCGCTTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

C-------ATAATGAGGTTTCCTAAGAATAGAAAGGTCTTTTGGAATTTGGCAAGTTCTTGG----AAAAACGA--AT---ACA-------A--CCATATTTTAGTAAAAA------------TTAT------------TTT-ATATTTTTAGGCCAAAAGTTCTGTCT---CACAACAGA---CGCAAAACACTTTCACCAACCAATTGTTTTTGGCCA---GATTTAGCAGCACCTTAAAA---AGT-----------------------------------------------------------GCAAAGCAGACAAATCTCTTGCCTTACCATGTCTTACCACTTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............GGTTTCCTAAGAATAGAAAGGT..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..................TTCCTAAGAATAGAAAGGTCT........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................TTAGCAGCACCTTAAAA---AGT-----------------------------------------------------------...........................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................AGA---CGCAAAACACTTTCACCAAC...................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................A---CGCAAAACACTTTCACCAACC..................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................GTTTTTGGCCA---GATTTAGCAG......................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................GTTTTTGGCCA---GATTTAGCA.......................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................AACACTTTCACCAACCAATT..............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................TTTAGCAGCACCTTAAAA---AGT-----------------------------------------------------------...........................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................GA---CGCAAAACACTTTCACCAACCA.................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................GA---CGCAAAACACTTTCACCAACC..................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATCTCTTGCCTTACCATGTCTTACCACT..	29	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CTTACCATGTCTTACCACTTG	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................CAAAAGTTCTGTCT---CACAACA............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................GTTTTTGGCCA---GATTTAGCAGCACC..................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................GATTTAGCAGCACCTTAAAA---AG.......................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................CAGA---CGCAAAACACTTTCACCAACC..................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................GAATAGAAAGGTCTTTTGG...................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
............TGAGGTTTCCTAAGAATAGAAAG............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0

droBip1

CCA---GTGAAATGAGGCTTCCTAAGAATAGAACGGTCTTTTGGAACTTGGCAAGTTATTGA----GCAAGTGA--AT---TAA-------ACTATTTT---TAGTAGAAA------------TAAC------------TTTTGTTTTTTTAGGCCAAAAGTTCCCTCC---CCCAAAAGA---CACAAAACATTATTTCTAACCAAATTTTGTTGACGA---GATTTAGCA---GCACGAAAAAGAGT-----------------------------------------------------------TCCAAACAGCCAAATCTTTTGCCTTACCATGTCCTGCCTCTTG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCAACGCCGAAATGCGATTTCTGGGCAATGGAAAAGTGTTATGGAACTTGGCAAGTGATTA--TTATAAATTGA--ATTGAAAA-------TCTATTTCCAATAACTATCA------------TCTCAATGCA------A---TTTCTTACAGACAAAGAGCTCCATCA---CACATCAGT---CGCCCAATGCGCTTGCCAA---GCTGCATCCCGCCA---GCTACAGCA---GCAGGAAGGAACCCCCCGCACCATCATCAGAGCCT------------------A-----AGTCTTCTAAAGCTGCACAGAAACAAAATCTCTTGACTTACCACGTCCTACCGCTTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................TCTTCTAAAGCTGCACAGAAAC.................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................TGGGCAATGGAAAAGTGTTATG....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TACAGCA---GCAGGAAGGAACCCCCC...................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................TCTGGGCAATGGAAAAGTGTTATG....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............GATTTCTGGGCAATGGAAAAGTGTTATG....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GCCGAAATGCGATTTCTGGGC.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CCCCCGCACCATCATCAGAGC...................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAAAATCTCTTGACTTACCAC.............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GCCT------------------A-----AGTCTTCTAAAGCTGCACAGAAA..................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GAAACAAAATCTCTTGACT...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GATTTCTGGGCAATGGAAAAGTGTTAT.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TGCCAA---GCTGCATCCCGCC....................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................T------------------A-----AGTCTTCTAAAGCTGCACA......................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................TGCGCTTGCCAA---GCTGCATC.........................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................TTCTGGGCAATGGAAAAGT..........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCAACGCCGAAATGCGATTTCTGGGCAATGGAAAAGTGTTATGGAACTTGGCAAGTGATTA--TTATAAATTGA--ATTGAAAA-------TCTACTTCCAATAACTATCA------------TCTCAATGC-------AAT-TTTCTTACAGACAAAGAGCTCCATCA---CACATCAGT---CGCCCAATGCGCTTGCCAA---GCTGCATCCCGCCA---GCTACAGCA---GCAGGAAGGAACCCCCCGCACCATCATCAGAGCCT------------------A-----AGTCTTCTAAAGCTGCACAGAAACAAAATCTCTTGACTTACCACGTCCTACCGCTTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................CATCA---CACATCAGT---CGCCC..................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......CGAAATGCGATTTCTGGGC.....................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
........GAAATGCGATTTCTGGGCA....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................AGAGCTCCATCA---CACATCAGT---C......................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................ACAGCA---GCAGGAAGGAACCCCCCGCACC..............................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................AATGGAAAAGTGTTATGGA..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................AGGAAGGAACCCCCCGCACC..............................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................AGCTCCATCA---CACATCAGT---CGC....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................CAGGAAGGAACCCCCCGCACCATCATCAG......................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................GCAATGGAAAAGTGTTATGGAA.................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

CAAACGTCGAGATGAGATTCCTTAACAATGGACGTGTTTTCTGGAATTTGGTAGTTATTCAT--CA---TTT-----------TTTTTTACTTAATGCCCTTTAATTAACC------------TCAC--------------C-GCTTCTTTAGACCAAGAATTCCATGA---ATTATCAGT---CGGGCAATGCCATCGTCAG---GCTACTCCCTGCCA---GCTATAGCA---ACAAA------AGCTCCGATCCTCCAGCCGAAC------------------------------C--------CAGAGAGAAACAAAATCTATTGACCTACCATGTGTTGCCCCTGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................ATTATCAGT---CGGGCAATGCC............................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
................................................................................................................................................................................................................................................................CTCCAGCCGAAC------------------------------C--------CAGAGAGAAACAAA..............................	27	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................ATCGTCAG---GCTACTCCCTGC.....................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................CCATCGTCAG---GCTACTCCCTGCC....................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.....................TTAACAATGGACGTGTTTTCTGGAAT................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................TATCAGT---CGGGCAATGCCATCGT.......................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................GATCCTCCAGCCGAAC------------------------------C--------CAGA........................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................CTACTCCCTGCCA---GCTATAG.........................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................ATTGACCTACCATGTGTTG.......	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................TATCAGT---CGGGCAATGCCATCGTCAG---G................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......................AACAATGGACGTGTTTTCTGGA..................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................TGCCATCGTCAG---GCTACTCCCTGCC....................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................CAGT---CGGGCAATGCCATCGTCAG---G................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................GA---ATTATCAGT---CGGGCAATGCCATCGTC......................................................................................................................................................	28	1	1.00	1	0	0	1	0	0

droVir3

CCAAAGCCGAGATGAGATTGCTGAACAGCAGAGGTGTCTTCTGGAATTTGGTGAGTAATTGC--CA---ACT-----------ATG--AG-CCTAATC--------CTGAC------------TAAC------------ATT-CGCCTTACAGACCAAATGTTCCATCAAAGCAAATCAAA---CTTCGAATGTTCTTGTCAA---GCTGCTGCCTGCCA---GCTTTGGCA---GCAAA------AGTTCTGAGCAGTCGCAAGTGCCA------------------C-----AA------AATGGGGCACCAAAGCAGAATCTGTTGAAATACCATGTTTTGCCACTGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................TTGAAATACCATGTTTTGCCACTGA	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GATGAGATTGCTGAACAGC..................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGTTCTGAGCAGTCGCAAG......................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GATGAGATTGCTGAACAGCAGAG..............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................CCA------------------C-----AA------AATGGGGCACC......................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................AA------AGTTCTGAGCAGTCGCAAGT.....................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAAA------AGTTCTGAGCAGTCGCAAG......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGTTCTGAGCAGTCGCAAGTGCCA------------------C-----.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GAACAGCAGAGGTGTCTTCTGGAA.................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTGAAATACCATGTTTTGCC.....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GATGAGATTGCTGAACAGCAGAGGTGT..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................CCAAAGCAGAATCTGTTGAAATACCATGT...........	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................A------------------C-----AA------AATGGGGCACCAAAGC.................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................C-----AA------AATGGGGCACCAAAGC.................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGAGATGAGATTGCTGAAC.....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GAGATGAGATTGCTGAACAGCAGA...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGAGATGAGATTGCTGAACAG...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................GCAGAGGTGTCTTCTGGAAT................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCCGAGATGAGATTGCTG........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGCAGAGGTGTCTTCTGGAATT...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ACCATGTTTTGCCACTGA	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAAATCAAA---CTTCGAATGTTCTTGTCAA---.................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GTTCTTGTCAA---GCTGCTGC.........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CAGCAGAGGTGTCTTCTGGA..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................ATGGGGCACCAAAGCAGAATC...........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATCTGTTGAAATACCATGTTT.........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTGAACAGCAGAGGTGTCTT.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................A---GCAAA------AGTTCTGAGCAGTCGC.........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GCCA------------------C-----AA------AATGGGGCACCAAAGCA................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TGTCAA---GCTGCTGCCTGCCA---GCT.............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CCGAGATGAGATTGCTGAACAGCAGAGGTGTCTTC......................................................................................................................................................................................................................................................................................................................	35	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................GTTCTGAGCAGTCGCAAGTGCCA------------------C-----.........................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CTTGTCAA---GCTGCTGCCTGCC....................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AA---CTTCGAATGTTCTTGTCAA---.................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTGAAATACCATGTTTTGCCAA...	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GAGCAGTCGCAAGTGCCA------------------C-----.........................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................A---GCAAA------AGTTCTGAGCAGTCGCAAGT.....................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GATGAGATTGCTGAACAGCAGA...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................AATACCATGTTTTGCCACTG.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGAGATTGCTGAACAGCAGAGGTGTC.........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GAACAGCAGAGGTGTCTTCTGGAATT...............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACAAATCCAAAATGAGGATATTAAAGAATGGACGAGTTTTCTGGAATTTAGTAAGCAAC-A--TTAG--GATATTAAAAGCGAA-------TCTATATTTATTAATATATA------------TATATATA--------ATA-TCCCCAACAGACCAAAGGCTCTATTAACACCAAGGAAG---CATCGGATATTCTTGTGA---AACTGATGCCTGCCA---GCTATGCCAGCAAAATTA---------GCGAGAAACCGGAGAAATCGGAGAAACCCGGAGAAACCGGAGAGAA------GAA--GAAGCAGCAGCAAACCCTTTTAAAGTATCCTGTTCTGCCACTGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................AAAGGCTCTATTAACACCAAGGAAG---CATC...................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0
........................AGAATGGACGAGTTTTCTGGA..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................A-TCCCCAACAGACCAAAGGCT............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................AGCAGCAAACCCTTTTAAAGT..................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................ATTA---------GCGAGAAACCGGAG.......................................................................................	18	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................AACCGGAGAGAA------GAA--GAAGCA......................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................AGAA------GAA--GAAGCAGCAGCAA...............................	20	16	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGAA------GAA--GAAGCAGCAGCA................................	19	20	0.05	1	0	0	0	0	0	1

droGri2

GCGACGCCGAGATGAGACTGCTGAGTAATAGAGGTGCCCTCTGGAATTTGGTAAATCTCTGT--CA---AGT-----------ATA---------TC-----TCATGAATACCACATTTA---ACGC-----A------TTT-CCTTTTGCAGACGAAAAGCTCACTGAAATCTAATCAAAGCGCTTCGAATGGGCTCGTTAA---ACTGCTGCCTGCCA---GCTACAGCA---GCGAA------AGT--------GCTG-------------------------------------C--------TGAGCCAAGGCAGAATCTATTGAAGTTTCATGTGCTGCCATTGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................ATGGGCTCGTTAA---ACTGCT...........................................................................................................................................	19	1	1.00	1	0	1
..............................................................................................................................................................................AATCAAAGCGCTTCGAATGGGCTCGTT......................................................................................................................................................	27	1	1.00	1	0	1

-13.5	-13.5	-12.9	-12.5

dse_1476

scaffold_6:2284026-2284176 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads