ID:

dse_145

 Coordinate:

scaffold_1:216664-216734 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.9 -32.8 -32.5

Flybase annnotation

Antisense to intron [Dsec\GM20885-in]; Antisense to CDS [Dsec\GM20885-cds]; Antisense to utr5 [utr5_plus_3160]

No Repeatable elements found

Sense Strand Reads

GACTGACTTGCCCCGCCCCCTGCGACCCGCGCCCGCACAGAATTAATCAATTGGCTGGGGCTGGTTGGGGCACGGACCGAAGACGGCTGACAGAAAGCCCGTAGCCAAAACCAGCCGAATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG

***********************************................((.((((((((((((..((((((..........((((.......))))))).)))..))))))))............)))).))************************************ 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 M054

female body

 V115

head

 V113

male body
.................................................................................................CCCGTAGCCAAAACCAGCCGAAT................................................... 23 0 1 11.00 11 7 1 3 0
.................................................................................................CCCGTAGCCAAAACCAGCCGA..................................................... 21 0 1 4.00 4 2 1 0 1
.................................................................................................CCCGTAGCCAAAACCAGCCGAA.................................................... 22 0 1 4.00 4 3 0 0 1
..................................................TTGGCTGGGGCTGGTTGGGGCA................................................................................................... 22 0 1 2.00 2 0 1 0 1
..................................................TTGGCTGGGGCTGGTTGGGGC.................................................................................................... 21 0 1 2.00 2 1 0 1 0
....................................................................GGCACGGACCGAAGACGGCTGAC................................................................................ 23 0 1 1.00 1 1 0 0 0
.................................................ATTGGCTGGGGCTGGTTGGGG..................................................................................................... 21 0 1 1.00 1 1 0 0 0
...............................................................................AAGACGGCTGACAGAAAG.......................................................................... 18 0 1 1.00 1 0 1 0 0
..............................................................................................................................................CGTTTCGGCGATTTGTTTCCA........ 21 0 1 1.00 1 0 0 0 1
....................................................................................................................................GCACACCGAGCGTTTCGGC.................... 19 0 1 1.00 1 1 0 0 0
.................................................................................................CCCGTAGCCAAAACCAGCCGAT.................................................... 22 1 1 1.00 1 1 0 0 0
............................................................................................................................CTTACCAGGCACACCGAGCGT.......................... 21 0 1 1.00 1 1 0 0 0
...............................................................................AAGACGGCTGACAGAAAGCCCGT..................................................................... 23 0 1 1.00 1 1 0 0 0
..................................................TTGGCTGGGGCTGGTTGGGT..................................................................................................... 20 1 1 1.00 1 0 0 1 0
..................................................TTGGCTGGGGCTGGTTCGGGC.................................................................................................... 21 1 1 1.00 1 1 0 0 0
.......................................................TGGGGCTGGTTGGGGCACG................................................................................................. 19 0 1 1.00 1 1 0 0 0
.................................................................................................CCCGTAGCCAAAAACAGCCGAAT................................................... 23 1 1 1.00 1 1 0 0 0
..................................................TTGGCTGGGACTGGTTGGGGC.................................................................................................... 21 1 1 1.00 1 0 1 0 0
..................................................TTGGCTGGGGCTGGTTGGG...................................................................................................... 19 0 1 1.00 1 0 0 0 1
.................................................................................................CCCGTAGCCAAAACCAGCCG...................................................... 20 0 1 1.00 1 0 0 1 0
................................................................................................................................CCAGGCACACCGAGCGTTTCGG..................... 22 0 1 1.00 1 1 0 0 0
..................................................TTGGCTGGGGCTGGTTGGGGCAAA................................................................................................. 24 2 1 1.00 1 0 1 0 0
.....................................................................................................................................................GCGATATGTTTTCAGGTCT... 19 2 2 0.50 1 0 1 0 0
...........................................................................ACCGAGGACGGCTGACAGT............................................................................. 19 2 2 0.50 1 0 0 1 0
.........................................................GGGCTGGTTGGGGCACGGTA.............................................................................................. 20 2 2 0.50 1 0 1 0 0
.....................................................................................................................................................GCGATATGTTGTCAGGTCT... 19 3 12 0.08 1 0 1 0 0
................................................ATTTGGCTTGGGCTGGGTGG....................................................................................................... 20 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

CTGACTGAACGGGGCGGGGGACGCTGGGCGCGGGCGTGTCTTAATTAGTTAACCGACCCCGACCAACCCCGTGCCTGGCTTCTGCCGACTGTCTTTCGGGCATCGGTTTTGGTCGGCTTAAAGTGAATGGTCCGTGTGGCTCGCAAAGCCGCTAAACAAAGGTCCAGACCC

************************************................((.((((((((((((..((((((..........((((.......))))))).)))..))))))))............)))).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total V115

head

 M054

female body

 V114

embryo
...............................................................................................................................TGGTCCGTGTGGCTCGCAAA........................ 20 0 1 1.00 1 1 0 0
....................................................................................................CGTCGGTTTTGGTCGGCTTAA.................................................. 21 1 1 1.00 1 0 1 0
.........CGGGGCGGGGGACGCTGG................................................................................................................................................ 18 0 1 1.00 1 1 0 0
...............................................................................................................................AAGTCCGTGTGGCTCGCAA......................... 19 2 2 0.50 1 0 0 1
..........GAGGCCGGGGACGCAGGGC.............................................................................................................................................. 19 3 19 0.11 2 0 2 0
........................TGGGTGCGGGAGTGTCTT................................................................................................................................. 18 2 10 0.10 1 0 1 0
............GGCCGGGGACGCAGGGCTC............................................................................................................................................ 19 3 16 0.06 1 0 1 0
.............................................................................................TTTCGTGAATCGGTGTTGGT.......................................................... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1:216614-216784 - dse_145 confident GACTGACTTGCCCC-------------------------------------------GCCC-------CCTGCGA---------------CC--------------CGC--GCCC--------------GCACAGAAT-TAATCAATTGGCT-GGGGCTGGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GA-------AAGCCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
droSim2 2r:3414600-3414777 - dsi_32445 candidate GACTGACTTGCCCC-------------------------------------------GCCC-------CCTGCGA---------------CC--------------CGC--GCCC--------------GCGCAGAAT-TAATCAATTGGCT-GGGGCTGGTTGGGGCACGGAGCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
dm3 chr2R:2550221-2550397 - dme_391 confident GACTGACTTGTCCC-------------------------------------------GCCC-------C-TTCGA---------------CC--------------TGC--GCCC--------------GCACAGAAT-TAATCAATTGGCT-GGGGCTGGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
droEre2 scaffold_4929:19995113-19995284 + der_1535 GACTGACTTGTCCC-------------------------------------------GCTC-------CCTGCGA---------------CC--------------CGC--GCCC--------------GTACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
droYak3 2L:15295151-15295322 - dya_1816 GACTGACTTATCCC-------------------------------------------GCTC-------CCTGCAA---------------CC--------------CGC--TGCC--------------GTACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGAG
droEug1 scf7180000409462:3423831-3424004 - GACTCGTCCGTCCC-------------------------------------------GTCCCTCACACT----------------------C--------------TGCT-CCCC--------------TTACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGACTG-------------------------------------------------------------------------------GCGACTGAAGACA--------------------------------------------------------------------------------------------------------GAAAGCTGGAAACCCGTAGC--------------------------C-----AA--AAACCAACCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
droBia1 scf7180000302292:3601010-3601196 + A-CTGACTTGTCTC-------------------------------------------GCCT-------C-TCTTCTCTGCCCGTCCCCGGCCCGCTCC-G-----------GCCC--------------TCGGAGAAT-TAATCAATTGGCT-------GGCTGGGGCACGGACTG-------------------------------------------------------------------------------GAG-------ACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC--------------------------GAAGC---CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCGATTTGTTTCCAGGTCTGGG
droTak1 scf7180000413887:52797-52999 + A-CCGACTCGTCCC-------------------------------------------TCTG-------CC-CCGT---------------CC--------------CGC--CCTC--------------GGACAGAAT-TAATCAATTG-----------GTTGGGGCACGGACTG-------------------------------------------------------------------------------AAGACTG--------------------------------------------------------------------------GAGAGACTACAGGCTGAAGACGGCAGACAGCAGACAGAAAGCAGAAAACCCGTAGC-----------------------A--AAAGCCAA--AAACCAGCTG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCAATTTGTTTCCAGGTCTGGG
droEle1 scf7180000491217:467809-467958 + TTTCGTCTTT---C-------------------------------------------G-------CTCCCT----------------------------G--------TC-CCCC--------------TTAGAGAAT-TAATCAATTGACT-------GGTTGGGGCACGGA---------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------GAAAGCTGAAAACCCGTAGC--------------------------C-----AA--AAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCGATTTGTTTCCAGGTCTGGG
droRho1 scf7180000766409:436060-436214 - GACGGACTTGTCTT-------------------------------------------TC-----ACTCCCT----------------------------G--------TC-CCCC--------------TAACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGA---------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------GAAAGCTAAAAACCCGTAGC--------------------------C-----AA--AAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCGATTTGTTTCCAGGTCTGGG
droFic1 scf7180000453955:756388-756544 + A-CTGACTCGTCCC-------------------------------------------TCCC-------GCT--------------------C--------------AGC--CCCC--------------TTACAGAAT-TAATCAATTGGCT-------TGTTGGGGCACGGA---------------------------------------------------------------------------------------------CAGAAAGCT------------GAA---------------------------------------------------------------------------------------CAGAAAACTCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
droKik1 scf7180000302470:115522-115685 - GCCACG-----------------GCCTCAGTCTCGGCCACTGCCGTCG-------------TCGACTCTCT----------------------------G--------GCCCCCT--------------TTACAGAAT-TAATCAATTGGCT-G----TTGTTGGGGCACGGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCGTAGC----------------------------------CAAAACCAGACG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGG
droAna3 scaffold_13266:18464282-18464350 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC----------------------------------CAGAGATAGCCG-----AATTTCACTTACCTGGTACTCCGAGCGTTTCGGCAATCTGCTTCCAGGTCTGGG
droBip1 scf7180000394114:19879-20019 + GGCACTCTCCGATG-------------------------------------------GCTC-------CACTCTA---------------CT-------G------TGG--CCCC--------------TTTTACAAG-CAATCAATTGC-TTG-------TTGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGCG------------------------------AGC---CAGAGTCAGCCG-----AATTTCACTTACCAGGTACACCGAGCGTTTCGGCAATCTGCTTCCAGGTCTGTG
dp5 3:813154-813375 - dps_3846 GGCTAGCTC-------------------------------------------------------ACCCTCT----------------------------G------TCGCCCCTC--------------CTGCAGAAT-TAATCAATTTGGTTG----TTGTTGGGGCACCAGTCGCGACGTCTCTGCCACATACTATATCTACTGAGATATACCCCAGAGCAGACCGACCTGGACCCGGACTGCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGAACG-----AATTTCACTTACCAGGCACTCCGAGTGTTTCGGCGATTTGTTTCCATGTCTGGG
droPer2 scaffold_2:988990-989211 - dpe_2523 GGCTAGCTC-------------------------------------------------------ACCCTCT----------------------------G------TCGCCCCTC--------------CTGCAGAAT-TAATCAATTTGGTTG----TTGTTGGGGCACCAGTCGCGACGTCTCTGCCACATACTATATCTACTGAGATATACCCCAGAGCAGACCGACCTGGACCCGGACTGCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGAACG-----AATTTCACTTACCAGGCACTCCGAGTGTTTCGGCGATTTGTTTCCATGTCTGGG
droWil2 scf2_1100000004954:2045959-2046050 + -----------------------------------------------------------------------------------------------------------------------------------ACAAAAT-TAATCAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC--------------------------C-----AA--TAACCAGACAGAGACCATTTAACTTACCAGGCACACCAAGTGTTTCGGCTATTTGCTTCCATGTCTGGG
droVir3 scaffold_12875:15432432-15432601 - dvi_24655 AGCTGCCTCGGCTG-------------------------------------------ATAC-------C----------------------------------------------------------------------CAACCAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTGCCACACAGCTTATGGGCTGGTTGCACCCTTCGCTTCGGACCCGTTTCGACAAGATGATTACAAACAAACAGTTCC----------------------------------A------TCAAA-----AATTTCACTTACCGCTAACGCCGAGTGTTTCGGCAATTTGCTTCCAGGTCTGCG
droMoj3 scaffold_6496:8364707-8364975 + dmo_3163 GAT-GT--C--------------------------------------GTCGTATGTCGCCT--------CTGTTGCCAGCCCATTCTGCACCCGTTCCACCCTCTCTGC--CTCTTCTCTTGTGTACGAACACAGAATTTAATCAATTTGCT-G----------CGACGA--------------------------------------------------------------------------------------CGACGGC-GCCAGCTGCCTTAGTTGCCTCCGCGGCCAATAC-------TCAATTTCACTTGCCACACAGCTTATGGGCTGGTTGCACCCT-------------------------------TCGGACACCCGTTTC--------------------------A-------CAAC---ACTAA-----AATTTCACTTACCGCTAACTCCAAGTGTTTCAGCGATTTGCTTCCAAGTCTGCG
droGri2 scaffold_15245:12234344-12234599 - TGCAGCCTTCCACCGCTGCTACTACTGCTGCCGCGACGAACGATGTCG-------------CCGTCTCACTGTTGCTAGCCTGCTCT------------GCCCC--TCT--GCCT--------------ACTTAGAAT-TAATCAATTTGCT-G-------------CAGCGACAG-------------------------------------------------------------------------------CAGACCCTCGTCT-------------------CGACTGATACCCACTAACCAATTTCACTTGCTGC----------------------------------------------------------------------TGCAACATTGAGTGAATTTTTCTGAATTTGGC---C-------AACA-----AATTTCACTTACCACTGACGCCGAGGGTTTCGGCGATTTGCTTCCAGGTTTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GACTGACTTGCCCC-------------------------------------------GCCC-------CCTGCGA---------------CC--------------CGC--GCCC--------------GCACAGAAT-TAATCAATTGGCT-GGGGCTGGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GA-------AAGCCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAGC----------------------------------CAAAACCAGCCG-----AAT...................................................23111.00111073
................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAGC----------------------------------CAAAACCAGCCG-----A.....................................................2114.0041120
................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAGC----------------------------------CAAAACCAGCCG-----AA....................................................2214.0040130
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGGCA........................................................................................................................................................................................................................................................................................................................................2212.0021100
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGGC.........................................................................................................................................................................................................................................................................................................................................2112.0020011
.....................................................................................................................................................................GGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGAC......................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................ATTGGCT-GGGGCTGGTTGGGG..........................................................................................................................................................................................................................................................................................................................................2111.0010010
...............................................................................................................................................................................................................................................................AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GA-------AAG.................................................................................................................1811.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCGGCGATTTGTTTCCA........2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACCGAGCGTTTCGGC....................1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAGC----------------------------------CAAAACCAGCCG-----AT....................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACCAGGCACACCGAGCGT..........................2111.0010010
...............................................................................................................................................................................................................................................................AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GA-------AAGCCCGT............................................................................................................2311.0010010
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGT..........................................................................................................................................................................................................................................................................................................................................2011.0010001
.......................................................................................................................................................T-GGGGCTGGTTGGGGCACG......................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGG...........................................................................................................................................................................................................................................................................................................................................1911.0010100
................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAGC----------------------------------CAAAACCAGCCG-----......................................................2011.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCACACCGAGCGTTTCGG.....................2211.0010010
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGGCAAA......................................................................................................................................................................................................................................................................................................................................2411.0011000
..........................................................................................................................................................GGGCTGGTTGGGGCACGGTA...................................................................................................................................................................................................................................................................................................................................2020.5011000
droSim2
GACTGACTTGCCCC-------------------------------------------GCCC-------CCTGCGA---------------CC--------------CGC--GCCC--------------GCGCAGAAT-TAATCAATTGGCT-GGGGCTGGTTGGGGCACGGAGCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGGCA........................................................................................................................................................................................................................................................................................................................................2213.00300000000000012000
..............................................................................................................................................................................CG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAA.........................................................................................................................1911.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGCGTTTCGGCGATTTGTT............2311.00110000000000000000
.........................................................................................................................................................GGGGCTGGTTGGGGCACGGT....................................................................................................................................................................................................................................................................................................................................2011.00100000000000010000
.........................................................................................................................................................GGGGCTGGTTGGGGCA........................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................AACCCGTAGC----------------------------------CAAAACCAGCCG-----A.....................................................2311.00100000000010000000
.....................................................................................................................................................GCT-GGGGCTGGTTGGGGC.........................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGGCACGGAC...................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................ACCCGTAGC----------------------------------CAAAACCAGCCG-----AATT..................................................2511.00100000100000000000
..........................................................................................................................................................GGGCTGGTTGGGGCACGGAGCG-------------------------------------------------------------------------------AA................................................................................................................................................................................................................................................2411.00100010000000000000
...................................................................................................................................................TGGCT-GGGGCTGGTTGGGGCA........................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................GC----------------------------------CAAAACCAGCCG-----AA....................................................1620.50100000000001000000
dm3
GACTGACTTGTCCC-------------------------------------------GCCC-------C-TTCGA---------------CC--------------TGC--GCCC--------------GCACAGAAT-TAATCAATTGGCT-GGGGCTGGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

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CME-W1-Cl.8+		V034

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ML-DmD9		V126

CME-L1		V127

G2		V128

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ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

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OSC		V145

S2		V146

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1182-2H		V148

mbn2		GSM1528798

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.....................................................................................................................................................................GGCACGGACCG-------------------------------------------------------------------------------AAGACGGCT.........................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTACCAGGCACACCGA..............................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GGGGCTGGTTGGGGCACGGA....................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGATTTGTTTCCAGGTCT...2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGGCACACCGAGCGTT.........................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................TGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGA.......................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................ATTGGCT-GGGGCTGGTTGGGGCACG......................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCGTAGC----------------------------------CAAAACCAGCCG-----AAT...................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGGGCG........................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCC..............................................................................................................3111.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGTAGC----------------------------------CAAAACCAGCCG-----AA....................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AAT-TAATCAATTGGCT-GGGGC...................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ACAGAAT-TAATCAATTGGCT-G.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------TC...........................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCCG-----AATTTCACTT............................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAC.........................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACACCGAGCGTTTCGGC....................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AATTGGCT-GGGGCTGGTTGGGT..........................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................................................................................................................TAATCAATTGGCT-GGGGCTGG................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCACACCGAGCGTTTCGG.....................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................CACGGACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------.............................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGGCGATTTGTTTCCAGG......2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AGAAT-TAATCAATTGGCT-GGGGCT..................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GAAAGCAGG....................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GGGCTGGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGA..............................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCGTTTCGGCGATTTGTTT...........2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTGGCT-GGGGCTGGTTGGCA..........................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................ACCG-------------------------------------------------------------------------------AAGACGGCTGACA--------------------------------------------------------------------------------------------------------GATC.........................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACTGACTTGTCCC-------------------------------------------GCTC-------CCTGCGA---------------CC--------------CGC--GCCC--------------GTACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................................................................................................................................................................................................AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAG.....................................................................................................................2112.0020001010
................................................................................................................................................................................................................................................................................................................................................................................................CCCGTAGC----------------------------------CAAAACCAGCCG-----AAT...................................................2311.0011000000
.....................................................................................................................................................GCT-------GGTTGGGGCACGGAC...................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
GACTGACTTATCCC-------------------------------------------GCTC-------CCTGCAA---------------CC--------------CGC--TGCC--------------GTACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGACCG-------------------------------------------------------------------------------AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGAGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................................................................................................................................................................AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAG.....................................................................................................................2112.00200100100000
.......................................................................................................................................................T-------GGTTGGGGCACGGACCG-------------------------------------------------------------------------------AA................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................G-------------------------------------------------------------------------------AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAG........................................................................................................................1911.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACCGAGCGTTTCGGCGA..................2111.00100100000000
....................................................................................................................................................................................................................................................................GGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCG.............................................................................................................2411.00100100000000
...............................................................................................................................................................................................................................................................AAGACGGCAGACA--------------------------------------------------------------------------------------------------------GAAAGCAGTT...................................................................................................................2311.00100010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACCAGGCACACCGAGCGT..........................2211.00100000100000
.................................................................................................................................................ATTGGCT-------GGTTGGGGCACGGAC...................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.................................................................................................................................................ATTGGCT-------GGTTGGGGCACGGA....................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..................................................................................................................................................TTGGCT-------GGTTGGGGCACGGACC..................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..................................................................................................................................................TTGGCT-------GGTTGGGGCATT......................................................................................................................................................................................................................................................................................................................................18200.05100100000000
droEug1
GACTCGTCCGTCCC-------------------------------------------GTCCCTCACACT----------------------C--------------TGCT-CCCC--------------TTACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGACTG-------------------------------------------------------------------------------GCGACTGAAGACA--------------------------------------------------------------------------------------------------------GAAAGCTGGAAACCCGTAGC--------------------------C-----AA--AAACCAACCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droBia1
A-CTGACTTGTCTC-------------------------------------------GCCT-------C-TCTTCTCTGCCCGTCCCCGGCCCGCTCC-G-----------GCCC--------------TCGGAGAAT-TAATCAATTGGCT-------GGCTGGGGCACGGACTG-------------------------------------------------------------------------------GAG-------ACA--------------------------------------------------------------------------------------------------------GAAAGCAGAAAACCCGTAGC--------------------------GAAGC---CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droTak1
A-CCGACTCGTCCC-------------------------------------------TCTG-------CC-CCGT---------------CC--------------CGC--CCTC--------------GGACAGAAT-TAATCAATTG-----------GTTGGGGCACGGACTG-------------------------------------------------------------------------------AAGACTG--------------------------------------------------------------------------GAGAGACTACAGGCTGAAGACGGCAGACAGCAGACAGAAAGCAGAAAACCCGTAGC-----------------------A--AAAGCCAA--AAACCAGCTG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCAATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTCGTCTTT---C-------------------------------------------G-------CTCCCT----------------------------G--------TC-CCCC--------------TTAGAGAAT-TAATCAATTGACT-------GGTTGGGGCACGGA---------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------GAAAGCTGAAAACCCGTAGC--------------------------C-----AA--AAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droRho1
GACGGACTTGTCTT-------------------------------------------TC-----ACTCCCT----------------------------G--------TC-CCCC--------------TAACAGAAT-TAATCAATTGGCT-------GGTTGGGGCACGGA---------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------------------------------------GAAAGCTAAAAACCCGTAGC--------------------------C-----AA--AAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGAGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droFic1
A-CTGACTCGTCCC-------------------------------------------TCCC-------GCT--------------------C--------------AGC--CCCC--------------TTACAGAAT-TAATCAATTGGCT-------TGTTGGGGCACGGA---------------------------------------------------------------------------------------------CAGAAAGCT------------GAA---------------------------------------------------------------------------------------CAGAAAACTCGTAGC----------------------------------CAAAACCAGCCG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droKik1
GCCACG-----------------GCCTCAGTCTCGGCCACTGCCGTCG-------------TCGACTCTCT----------------------------G--------GCCCCCT--------------TTACAGAAT-TAATCAATTGGCT-G----TTGTTGGGGCACGGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCGTAGC----------------------------------CAAAACCAGACG-----AATTTCACTTACCAGGCACACCGAGCGTTTCGGCGATTTGTTTCCAGGTCTGGGSizeHit CountTotal NormTotal
No Reads
droAna3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC----------------------------------CAGAGATAGCCG-----AATTTCACTTACCTGGTACTCCGAGCGTTTCGGCAATCTGCTTCCAGGTCTGGGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACCTGGTACTCCGAGC............................2012.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACTCCGAGCGTTTCGG.....................2011.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTACCTGGTACTCCGAGC............................2111.001010000
droBip1
GGCACTCTCCGATG-------------------------------------------GCTC-------CACTCTA---------------CT-------G------TGG--CCCC--------------TTTTACAAG-CAATCAATTGC-TTG-------TTGTTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCGCG------------------------------AGC---CAGAGTCAGCCG-----AATTTCACTTACCAGGTACACCGAGCGTTTCGGCAATCTGCTTCCAGGTCTGTGSizeHit CountTotal NormTotal
No Reads
dp5
GGCTAGCTC-------------------------------------------------------ACCCTCT----------------------------G------TCGCCCCTC--------------CTGCAGAAT-TAATCAATTTGGTTG----TTGTTGGGGCACCAGTCGCGACGTCTCTGCCACATACTATATCTACTGAGATATACCCCAGAGCAGACCGACCTGGACCCGGACTGCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGAACG-----AATTTCACTTACCAGGCACTCCGAGTGTTTCGGCGATTTGTTTCCATGTCTGGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................................................................................................................................................CCTGGACCCGGACTGCGCTGG.......................................................................................................................................................................................................................................................2112.0020200000000
...............................................................................................................................................................................................................................GACCGACCTGGACCCGGACTGCG...........................................................................................................................................................................................................................................................2312.0020100100000
..............................................................................................................................................................................................................................AGACCGACCTGGACCCGGACTGCG...........................................................................................................................................................................................................................................................2412.0020200000000
................................................................................................................................................AATTTGGTTG----TTGTTGGGGC.........................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................AATTTGGTTG----TTGTTGGGGCA........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................CAGACCGACCTGGACCCGGA................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................TATACCCCAGAGCAGACCGAC...........................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................ATATACCCCAGAGCAGACCG.............................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACCAGGCACTCCGAGTGTTTCGGCG...................2811.0010100000000
........................................................................................................................................................................................................................................GGACCCGGACTGCGCTGGGAG....................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTTTCGGCGATTTGTT............2111.0010100000000
..................................................................................................................................................................................................................................................TGCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------..........................................................................................................2111.0010000100000
................................................................................................................................................................................................................................................ACTGCGCTGGGAGTCGA-------GT.......................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................................................................................................................................CCGGACTGCGCTGGGAGTCG.................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................GTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTC.................................................................1811.0011000000000
......................................................................................................................................................................................................................................................CTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------C......................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................GA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGAACG-----A.....................................................2211.0010000100000
..............................................................................................................................................................................................................................AGACCGACCTGGACCCGGACTG.............................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................GACCGACCTGGACCCGGACTG.............................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGCTAGCTC-------------------------------------------------------ACCCTCT----------------------------G------TCGCCCCTC--------------CTGCAGAAT-TAATCAATTTGGTTG----TTGTTGGGGCACCAGTCGCGACGTCTCTGCCACATACTATATCTACTGAGATATACCCCAGAGCAGACCGACCTGGACCCGGACTGCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGAACG-----AATTTCACTTACCAGGCACTCCGAGTGTTTCGGCGATTTGTTTCCATGTCTGGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................................................................................................................................AGACCGACCTGGACCCGGACTGCG...........................................................................................................................................................................................................................................................2412.002010010
......................................................................................................................................................................GCACCAGTCGCGACGTCTCTG......................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................GCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------C......................................................................2211.001100000
..............................................................................................................................................................................................................................................................CGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGA..............................................................1911.001100000
.................................................................................................................................................................................................................................................CTGCGCTGGGAGTCGA-------GTC......................................................................................................................................................................................................................................1911.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTGTTTCCATGTCTGG.2011.001010000
..............................................................................................................................................................................................................................AGACCGACCTGGACCCGGACTGCGCTGGG......................................................................................................................................................................................................................................................2911.001100000
..................................................................................................................................................................................................................................CGACCTGGACCCGGACTGCGCTGG.......................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCAGGCACTCCGAGTGTT.........................2111.001010000
........................................................................................................................................................................................................................................GGACCCGGACTGCGCTGG.......................................................................................................................................................................................................................................................1811.001000010
.........................................................................................................................................................................................................................................................GGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTCGGA..............................................................2411.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCACTCCGAGTGTTTCGG.....................2111.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACCAGGCACTCCGAGTGTT.........................2311.001001000
...................................................................................................................................................................................................................................................GCGCTGGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------..........................................................................................................2011.001100000
.......................................................................................................................................................................................................................................TGGACCCGGACTGCGCTGGGAGTCGA-------G........................................................................................................................................................................................................................................2711.001010000
............................................................................................................................................................................................................................GCAGACCGACCTGGACCC...................................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................GACCTGGACCCGGACTGCGCTGG.......................................................................................................................................................................................................................................................2311.001000010
........................................................................................................................................................................................................................................................GGGAGTCGA-------GTCG--------------------------------------------------------------------------------------------------------GA-----------------C----------------------------------CAAGTAA................................................................2311.001010000
..............................................................................................................................................................................................................................AGACCGACCTGGACCCGGACT..............................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................CGCGACGTCTCTGCCACA.................................................................................................................................................................................................................................................................................................................1820.501100000
droWil2
-----------------------------------------------------------------------------------------------------------------------------------ACAAAAT-TAATCAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC--------------------------C-----AA--TAACCAGACAGAGACCATTTAACTTACCAGGCACACCAAGTGTTTCGGCTATTTGCTTCCATGTCTGGGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
AGCTGCCTCGGCTG-------------------------------------------ATAC-------C----------------------------------------------------------------------CAACCAATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTTGCCACACAGCTTATGGGCTGGTTGCACCCTTCGCTTCGGACCCGTTTCGACAAGATGATTACAAACAAACAGTTCC----------------------------------A------TCAAA-----AATTTCACTTACCGCTAACGCCGAGTGTTTCGGCAATTTGCTTCCAGGTCTGCGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................................................................................................................................................................................................................................................................CTTCGGACCCGTTTCGACAAGATGATT.........................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000003000000000
.....................................................................................................................................................................................................................................................................................................................................................ACCCTTCGCTTCGGACCC..........................................................................................................................................1812.0020100000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................................CCCTTCGCTTCGGACCCG.........................................................................................................................................1812.0020100000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................................................................................................................................................................................................................................................TTGCACCCTTCGCTTCGGACC...........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000001100
..................................................................................................................................................................................................................................................................................................................................................TGCACCCTTCGCTTCGGACCCGTTTCG....................................................................................................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CACCCTTCGCTTCGGACCCGTTTCGAC..................................................................................................................................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACTTACCGCTAACGC.................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CCCTTCGCTTCGGACCCGTT.......................................................................................................................................2011.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGGACCCGTTTCG....................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................CACCCTTCGCTTCGGACCCGTTTCGA...................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................................................................................................................................ACCCTTCGCTTCGGACCCGT........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................ACCCTTCGCTTCGGACCCGTTTCG....................................................................................................................................2411.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGTTTCGACAAGATGATC.........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGGACCCG.........................................................................................................................................1511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................GGTTGCACCCTTCGCTTCGGACC...........................................................................................................................................2311.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GCTTATGGGCTGGTTGCACCCTTC.....................................................................................................................................................2411.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GCACCCTTCGCTTCGGACCCGT........................................................................................................................................2211.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TCGCTTCGGACCCGTTTCGACA.................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTACCGCTAACGCCGAG.............................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CACCCTTCGCTTCGGACCCGT........................................................................................................................................2111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CACCCTTCGCTTCGGACC...........................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
GAT-GT--C--------------------------------------GTCGTATGTCGCCT--------CTGTTGCCAGCCCATTCTGCACCCGTTCCACCCTCTCTGC--CTCTTCTCTTGTGTACGAACACAGAATTTAATCAATTTGCT-G----------CGACGA--------------------------------------------------------------------------------------CGACGGC-GCCAGCTGCCTTAGTTGCCTCCGCGGCCAATAC-------TCAATTTCACTTGCCACACAGCTTATGGGCTGGTTGCACCCT-------------------------------TCGGACACCCGTTTC--------------------------A-------CAAC---ACTAA-----AATTTCACTTACCGCTAACTCCAAGTGTTTCAGCGATTTGCTTCCAAGTCTGCGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................ATTTGCT-G----------CGACGA--------------------------------------------------------------------------------------CGACG............................................................................................................................................................................................................................................1911.001000010
........................................................................................................................................................................................................................................................................................................................................ATGGGCTGGTTGCACCCT-------------------------------........................................................................................................................1811.001000010
.......................................................................................................................................................................................................................................................................................................................................TATGGGCTGGTTGCACCC........................................................................................................................................................1811.001000010
....................................................................................................................................................................................................................................................................................................................................................CACCCT-------------------------------TCGGACACCCGTTTC--------------------------A-------C......................................................................2311.001000010
..........................................................................................................................................................................................................................................................................................................................................GGGCTGGTTGCACCCT-------------------------------TCGGACACCC..............................................................................................................2611.001000010
.................................................................................................................................................................................................................................................................................................................................ACAGCTTATGGGCTGGTTGCAC..........................................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------------A-------CAAC---ACTAA-----AATTTCAC..............................................2011.001000010
..............................................................................................................................................TCAATTTGCT-G----------CGACGA--------------------------------------------------------------------------------------CGACGGC-GCC......................................................................................................................................................................................................................................2711.001000010
............................................................................................................................................AATCAATTTGCT-G----------CGACGA--------------------------------------------------------------------------------------CGACGGC-.........................................................................................................................................................................................................................................2611.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAAGTGTTTCAGCGATTTGC.............2511.001000010
...................................................................................................................................................................................................................................................................................................................................................GCACCCT-------------------------------TCGGACACCCGT............................................................................................................1911.001010000
droGri2
TGCAGCCTTCCACCGCTGCTACTACTGCTGCCGCGACGAACGATGTCG-------------CCGTCTCACTGTTGCTAGCCTGCTCT------------GCCCC--TCT--GCCT--------------ACTTAGAAT-TAATCAATTTGCT-G-------------CAGCGACAG-------------------------------------------------------------------------------CAGACCCTCGTCT-------------------CGACTGATACCCACTAACCAATTTCACTTGCTGC----------------------------------------------------------------------TGCAACATTGAGTGAATTTTTCTGAATTTGGC---C-------AACA-----AATTTCACTTACCACTGACGCCGAGGGTTTCGGCGATTTGCTTCCAGGTTTGTGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 10:13 PM