ID:

dse_1403

 Coordinate:

scaffold_5:3411445-3411718 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.4 -28.4 -28.0

Flybase annnotation

CDS [Dsec\GM18024-cds]; CDS [Dsec\GM18024-cds]; exon [dsec_GLEANR_19528:2]; exon [dsec_GLEANR_19528:3]; intron [Dsec\GM18024-in]; Antisense to intron [Dsec\GM18546-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTAGTGCGGATTATGCAACTGCGGCCAGACGCTGGAGATTTCGAGAGGGGTTCGCAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACCGCAGCGACGATGCAGCGACGGTGACGGTTGCAGAGCACACCGGTTGCGGAATGCATTTAGTTACCTGACCATTTCAAAAACATCCGAGCCGCCGACGAGCAGCGAGCAGGAGCGCTCCCAGCCGAAATATCCGGAGTGATAATTGCCCATAATTGAAGGGAATTAACAGAGGAGCAGGAGAAGGAGGAGGAGACCTTAAAAGCCTGCAAAACCCCCACTAAACCCGAGATGTTGCCCACGGGACAAGGGCAGTTTGACGGCCGGCAGGCCGCAGAAAT
************************************************************************************************(((((.....(((.(((((.......)))))...))).....)))))((((((...((((....)))).)))))).......(((..(((((.........))).)).)))...******************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 V113
male body		 V115
head
 M054
female body
................................................................................................GCAGCGACGATGCAGCGACGGTGACG............................................................................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0
.......................................................................................................................................................................................GCCGCCGACGAGCAGCGAGCAGGAGCG.................................................................................................................................................................... 27 0 1 2.00 2 0 1 0 1
..........................CAGACGCTGGAGATTTCGAGAGGGG................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
......................................ATTTCGAGAGGGGTTCGC.............................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0
.............................................................................................................................GCAGAGCACACCGGTTGCGGAA................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1
.........................................................................................................ATGCAGCGACGGTGACGG........................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................GCCGACGAGCAGCGAGCAGGAGCGCTCCC............................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0
...............GCAACTGCGGCCAGACGC..................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................GCAGGAGAAGGAGGAGGAGACC................................................................................... 22 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................ACGAGCAGCGAGCAGGAGCGCT.................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0
...................................................................................................................................CACACCGGTTGCGGAATGC................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
............................................................................................................................TGCAGAGCACACCGGTTGCGGAATGC................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................AAAAACATCCGAGCCGCCGACGAGC.................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................AGCAGCGAGCAGGAGCGCTCCCAG............................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
GCTAGTGCGGATTATGCA.................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................GACGAGCAGCGAGCAGGATCG.................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................................................................................GAGCAGGAGAAGGAGGAGGAGACCTT................................................................................. 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................GCCGACGAGCAGCGAGCAGGAGCG.................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................................CGCCGACGAGCAGCGAGCAGGAGCGCTCC................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0
...........................................................................................................................................................................................CCGACGAGCAGCGAGCAG......................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0
...AGTGCGGATTATGCAACTGCGGCC........................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................GTGATAATTGCCCATAATTGAAGGGAAT................................................................................................................... 28 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................ACATCCGAGCCGCCGACGAGCA................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0
..............................................................................................................................................................................................ACGAGCAGCGAGCAGGAGCGCTCCC............................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
................................................................................................GCAGCGACGATGCAGCGACGGT................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AGGGCAGTTTGACTGGCG............... 18 2 1 1.00 1 0 0 0 1
...................................................................................................GCGACGATGCAGCGACGGT................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
..........................................................ATAGACGACTTAATTATCAGT....................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0
.............................................................................................................................................................................................................................................................................GCAGGAGAAGGAGGAGGAGAC.................................................................................... 21 0 1 1.00 1 1 0 0 0
............................GACGCTGGAGATTTCAAGAGGG.................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................................................AACAGAGGAGCAGGAGAAGGAGG........................................................................................... 23 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................ACCCGAGATGTTGCCCACGGAC................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................GCAGGAGAAGGAGGAGGA....................................................................................... 18 0 2 0.50 1 0 1 0 0
.............................................................................................................ATCGACGGTGACGGTAGC....................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0
................................................................................................................................................................................................................................................................................................................................................GGACAAGGGGAATTTGAC.................... 18 2 4 0.50 2 0 0 1 1
................................................................................................................................................................................................................................................................................................................................................GGACAAGGGGAGTCTGACTG.................. 20 3 3 0.33 1 0 1 0 0
.....................................GATTACGAGAGCGGTTTGC.............................................................................................................................................................................................................................................................................................................................. 19 3 18 0.06 1 0 1 0 0
................................................................................................................................................................................................................................................................................................................................................GGACAAGGGCAATCTGACTG.................. 20 3 18 0.06 1 0 1 0 0
................................................................................................................................................................................................................................................................................................................................................GGACAAGGGGAATTTGACT................... 19 3 20 0.05 1 0 1 0 0
................................CTGGAGATATCGGAAGGGG................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

CGATCACGCCTAATACGTTGACGCCGGTCTGCGACCTCTAAAGCTCTCCCCAAGCGTCTATCTGCTGAATTAATAGTCACGGTCTAATAATAGTGGCGTCGCTGCTACGTCGCTGCCACTGCCAACGTCTCGTGTGGCCAACGCCTTACGTAAATCAATGGACTGGTAAAGTTTTTGTAGGCTCGGCGGCTGCTCGTCGCTCGTCCTCGCGAGGGTCGGCTTTATAGGCCTCACTATTAACGGGTATTAACTTCCCTTAATTGTCTCCTCGTCCTCTTCCTCCTCCTCTGGAATTTTCGGACGTTTTGGGGGTGATTTGGGCTCTACAACGGGTGCCCTGTTCCCGTCAAACTGCCGGCCGTCCGGCGTCTTTA
********************************************************************************************************************************************************************(((((.....(((.(((((.......)))))...))).....)))))((((((...((((....)))).)))))).......(((..(((((.........))).)).)))...************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body		 V115
head
........................................................................................................................................................................................................TCGTCCACGAGAGGGTCGGC.......................................................................................................................................................... 20 2 1 1.00 1 0 1 0
........................................................................................................................................................................................................TCGTCCACGAGAGGGTCGACT......................................................................................................................................................... 21 3 10 0.90 9 6 3 0
.............................................................................................................TAGCTGCCACTGCCATCG....................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1
....................................................................................................................................................TGTAAATCAATGCACTGG................................................................................................................................................................................................................ 18 2 2 0.50 1 1 0 0
.........................................................................................................................................................................................................CGTCCACGCGAGGGTCGAC.......................................................................................................................................................... 19 2 6 0.17 1 1 0 0
..........................................................................................................................................................................................................GTCCACGAGAGGGTCGACTTT....................................................................................................................................................... 21 3 7 0.14 1 1 0 0
..................................................................................................................................................................................................................................................................................................GAATTGTCGCACGTTTTG.................................................................. 18 2 8 0.13 1 1 0 0
..........................................................................................................................................................................................................................GGGTTAGAGGCCTCACTAT......................................................................................................................................... 19 3 10 0.10 1 1 0 0
..........................................................................................................................................................................................................GTCCACGCGAGGGTCGACTC........................................................................................................................................................ 20 3 11 0.09 1 0 1 0
....................................................................................................................................................................................................ACGCTCGTCCACGAGAGGGT.............................................................................................................................................................. 20 3 11 0.09 1 1 0 0
..........................................................................................................................................................ACAATGGACTGATAAAGATT........................................................................................................................................................................................................ 20 3 14 0.07 1 1 0 0
..........................................................................................................................................................................................................GTCCACGCGAGGGTCGAC.......................................................................................................................................................... 18 2 14 0.07 1 1 0 0
..........................................................................................................................................................................................................GTGGTCGCGAGGGTAGGCTT........................................................................................................................................................ 20 3 14 0.07 1 1 0 0
.........................................................................................ATACTGGCGGCGGTGCTAC.......................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0
...........................................................................................................................................................................................................TCCTCGAGAGGGTCGACT......................................................................................................................................................... 18 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_5:3411395-3411768 - dse_1403 GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGATTTCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGACGATGCAGCGACGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGA--AGG---GAATTAA--C-AG-AG---GAG-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGGA---G-GAGACCTTAA-AAGCCTGCAAAACCC-CCACTAA-----------------------------ACCCGAGATGTTGCCCAC--GGGACAAGGGCAGTTTGA------CGGC---------------------------CGGC------AGGCCGCAGAAAT
droSim2 2l:5141296-5141670 - GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGACGATGCAGCGACGGTGAC-G--GTTACAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGA--AGG---GAATTAA--C-AG-AG---GAG-----------------------------------------C-----------------------------------------------AG----------G------------A-----------GCAG---------GAGGAGGA---G-GAGACCTTAA-AAGCCTGCAAAACC--CCACTAA-----------------------------ACCCGAGATGTTGCCCAC---GGACAAGGGCAGTTTGA------CGGC---------------------------CGGC------AGGCCGCAGAAAT
dm3 chr2L:5332366-5332762 - GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGCGACGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACAACCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAACAGGAGCT-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGA--AGG---AAATTAA--C-AG-AG---GAG-----------------------------------------A-----------------------------------------------AGGGAGGCGCAGGAGAAGGAGGAGGA-----------GGAG---------GAGGAGGA---G-GAGACCTTAA-AAGCCTGTAAAATC--CCAATAA-----------------------------ACCCGAGATGTTGCCCAC---GGACAAGGGCAGTTTGA------CGGC---------------------------CGGC------AGGCCGCAAAAAT
droEre2 scaffold_4929:5415496-5415871 - GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGATTTAATTATCAGTGCCAGATTATTATCACC----ACAGCGGCGATGCAGCGGCGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCCAGCC-----A----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGG--CGG---GAATTAA--C-AG-AG---GAG-----------------------------------------T-----------------------------------------------AGGTAGG-----------------------------------CAGAG---GAGGTGGA---G-GAGACCTTAAAAAGCCCGCAAAATC------TAA-----------------------------AACCGCGATGTTGCCCAC---CGACAAGGGCAGTTTGG------CGGC---------------------------CAGC------AGGCCGCAGAAAT
droYak3 2L:13864506-13864895 + GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGATTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGCAGCGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTAC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCACAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-G--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGTGTGATAATTGCCCATAATTGA--AGG---GAATTAA--C-CA-AGGAGGAG-----------------------------------------T-----------------------------------------------AG----------G------ACGAGGA-----------GGAGGCAGAGGCAGAGGCGGA---G-GAGACCTTAA-AAGCCAGCAAACCC-----CTAA-----------------------------ACCCGAGATGTTGCCCAC---CGACAAGGGCAGCTTGG------CGGC---------------------------CAGC------AGGCCGCAGAAAT
droEug1 scf7180000409005:1235477-1235841 - GCTAGAGCAGATTATGCAACTGCGG---CCAGACTTTGGAGAGATTG--------AG------------------------------------AGGGGCCCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGC---GGTGAC-G--GTTGCGGA---GAG--------------------------------CA------------CCGGTTGC------------AGAATGC-------------------ATTTAGT----------TACCTGACT------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCT-C-----TCGTCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCTTATAATTAG--AGG---GAATTAA--C-AG-GG---GAGATCCC--------------------------G---------------AC--------------ATTAGA------------AAA----AAG----------G------------A-----------AAAC---------CAGCAGTA---A-AAAACCTTA-----------------------------------------------------------AAATGTTACCCAC---GGACAAGGGCAGCTCTT------TGGG---------------------------CCCC------AGGCCGCAGAAGT
droBia1 scf7180000302261:785759-786108 - GCTAGAGCGGATTATGCAACAGCGG---CCAGACTTTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGGCTTAATTATCAGCGCCAGATTATTATCACC----GCAGCGCCGATGCAGC---GGTGAT-G--GTTGTGGA---G-----------------------------------------------------------------------ATGC-------------------ATTTGGC----------TACCTGACC------------AGTTTAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGAG---------G-T--------CCCCATCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGG--CGG---GAATTAA--CCAG-GG---GAGATTCCTG----------------------------------------AA------------------ACC-------------------------------A------------CAAAGCGAAA-AGAGC---------CCTGAGAAAAGGC-------------------C--ATC---------------------------------------CCAGAGATGCTGCCCAC---GGACAAGGGCAGTGCGGGAGGTGTGGG---------------------------CCCC------AGGCCGCAGAAAT
droTak1 scf7180000415704:161411-161764 + GCTCGAGCGGATTATGCAACAGCGG---CCAGACTTTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCAATGCAGCGGTG---ATTGCCGACGAGGA---GAG--------------------------------TA------------CCGCTTGC------------GGAATGC-------------------ATCTAGT----------TACCTGACT------------ATTTCAAAAACATCCGAGCCGC---CGACGA------------------------------------------G------AGCAGAGAGCAGCAG-G-T--------CCACAGCC-----T------------TCA-------------AAAAAAATAGT-ATCCGGAGTGATAATTGCTAGTAATTAGCGGGG---GAATTAA--A-AA-A-----------------------------GAGAAACCTT--T-----------------------------TGAGG------------GAA----AAA--------------------------------------------------------------------------------AAAATCCT-------A----------------------------TCCAGTCATGCTGCCCAC---GGACAAGGGCAGTTCGG------CGGTCCCTG---------------------------------------------
droEle1 scf7180000491338:161098-161432 - GCTAGAGCGGATTATGCAACTGCGG---CCAGACTTTGGAGAGAACG--------CG------------------------------------AGGGACCCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACA----GCAGCGGCGATGCAGCGGCGGTGAG-G--CTTGCGGA---GAT--------------------------------TA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACT------------GCTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGTTCAGGAGCG-C--------TCCTAGTC-----G----------------------------A-------AAA-AAA--AAGTGATAATTGCTTTTAATTGG--GGGC--GAATTA---------G---GAGATTCCCCAGTGACAACAA----CAG---------------------------------------TGAGA------------A------AAG---------------------------------A--------------------------A-------------------CAAAACCC-------AA------------------------------CGAGATGTTGACCAC---GGACAAGGGCAGTT---------------------------------------------------------------
droRho1 scf7180000776804:46086-46453 + GCTAGAGCGGATTATGCAACTGCGG---CCAGACTTTGGAGAGATCG--------AG------------------------------------AGGGGCCCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGCGGCGGTGAC-G--CTTGCGGA---GAT--------------------------------TA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACT------------ATTTCAAAAACATCCGAACCGC---CGACG--------------------------------------------------AGCAGCGATCAGGACCGGG--------TCCCAGCC-----G----------------------------AAA-----AGT-ATCCGGAGTGATAATTGCTTTTAATTGG--AGG---GAATTAAAGC-CGAGG---GGGATTCC-----------------------------------------GAAATAGCG---AAATCGCTAGACCGC--GGGAAACAAAAA-AA----------------------------CACAAGAATAAC---------CC--------G------------------------------------AA------------------------------CGAAATGTTGGCCACAACGGACAAGGGCAGTT---------------------------------------------------------------
droFic1 scf7180000453842:910224-910607 + GCGAGTGCGGATTATGCAACTGCGG---CCAGACTTTGGAGAGATTG--------CG------------------------------------AGGGGTCCG-------------------CAGATAGACGGTTTAATTATCAGCGACAGATTACTATCACC----GCAGCGGCGATGCAGC---GGTGAC-G--GTTGCGGA---GAG--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTGGC---TGCCC--TACCTGACT------------ATTTCCAAATCATCCGAGC---------------------------------------------------------------CAGCGAGCAGGAGCG-T--------TCCCAGCCCAACCA----------------------------G-------C-TAACCGGGAGTGATAATTGTCGGTAATTGG--AGGTTTCAATTAAAAC-GG-AA---GAGAATCCCC----------------------------------------AA------------------GCCAA-TCCCCAAGCCAAAA-AAG---------------------------------AATAAC---------CCTGAATACAAAG-AGAC-----------------------------------------------------------CCCGAAATGTTGGCCAC---GGACAAGGGCAGTTCGG------CTGG------------------------------CAGTCAGAGGCCACAGAAGA
droKik1 scf7180000302643:514648-515067 + G---------ATTATGCAACTGAGG---CCAGGCGGAGGAGCG-------------G------------------------------------AGAAGACCC-------------------CAGATAGACGGTTTAATTATCAGCGCCAGATTATTATCACC----GCAGCGGCGATGCAGC---GGTGAC-G--GTTCCGGA---GAGGACCCGTGTATGTGC------------TCTCTCT------------CCGGTTAC------------GGAATGC-------------------ACCCAGC----------TACCTGACCACAGCCGCCGCCAGTTCTAAAG--------CCGCCACCGACCG------------------------------------------C------AGCAGTGAGCAGGAGCG-CCCAGGTCGTCCCAGCC-----T----------------------------AAA-----AAT-ATCCGGAGTGCCAATTGCCAGTAATTAG--GCG---AAATTAA--G-AG-GG---GA----------------------------ACCCA--TTGACGGATCCCGAC--------------CCTAGATC------------A----AAC----------A------------CAAACTCAGAC-------------------ATACAGAG------------------------------------------------------------------AGACATGTTGGCCAC---GGACAAGGGCACGCCAA------TGGGGCCCACGCCAATCATAGTGAGCAGC--CGGC------AGG-GGCAGAAAT
droAna3 scaffold_12916:9826827-9827299 + G---------ATTATGCAACTGCGG---CCAGACAAAGAAGCGATAGACAGAGATTGGCTTGGGAAGAAGATTG----------CCGGCGGAGAGGGGTGCC-------------------CAGATAGACAA-GTAATTATCAGTGCCAGATTATTATCACC----GGAGCGGCGATGCAGCGACGGTGAC-G--GTTCCGGAGGAGAGGACCAGTA--AGTGC------------GCTCTCT------------CCGGCTAC------------GGAATGC-------------------ATAGCGC----------TACCTGACTACGGG------TATTCCAAAATCAGCCGAG----------------------------------------------------------------CAGCCAGCAGGAGCG-G--------TCCCCGCC-----AGAGCACCAGCCGCCCATCCAGACAGGCGC-------AAT-ATCCGTAGCGCCAATTAGGC-----------AG---CAATTAAA-C-AG-AT---TAG------------------CCCTGAGCTCC--GAGTT--CG------GAAAGACCCGGGACC--TCCAACTAT-CAGCCAAACCAAAAAATA---------------------------------A---------------------------------TT----------------------------------------------------------AAAAATGTTGGCCAC---GGACAAGGGCACGCCGG------CCAGCCCCACGCCGATCATCGTGAGCACCAGCGCC------AGGTCGCAGAAAT
droBip1 scf7180000396580:1203215-1203683 - T---------ATTATGCAACTGCAG---CCAGACAAAGAAGCTATAGACAGAGATTGGCTAGAGAAGAAGAGTG----------CCG---GAGAGGGGTGCC-------------------CAGATAGACAA-GTAATTATCAGTGCCAGATTATTATCACC----GAAGCGGCGATGCAGCGACGGTGAC-G--GTTCCGGAGGAGAGGACCAGTA--AGTGC------------GCTCTCT------------CCGACTAC------------GGAATGC-------------------ATTGCGC----------TACCTGACTACGGG------TATTCCAAAACCAGCCGAG----------------------------------------------------------------CAACCAGCAGGAGCG-G--------TCCCCGCC-----AGAAAATCAGCCGCTTATCCAGACAGGCGC-------AAT-ATCCGTAGCGCCAATTA---------GG--AGG---CAATTAAA-C-AG-AT---TAG------------------CCCTGAGCTCC--AAGTT--CG------GATAGACCCGGGTCC--CCTAGCTTA-TAGCCAAACCAAAA-ATA---------------------------------A---------------------------------TT----------------------------------------------------------AAAAATGTTGGCCAC---GGACAAGGGCACCCAGG------CCAGCCCCACGCCGATCATCGTGAGCACCAGCGCC------AGGTCGCAGAAAT
dp5 4_group3:7154858-7155405 - GTGGACCTGGATTATGCAACAGCAG---ACAGTCGGAGGAGAGAGGG--------AGA----------------GGTGACAGACTGT---CCA-GAGACAGA-------------------CAGACAGACCGAGTAATTATCAGTGCCAGATTATTATCATCAGCAGCAGCAGCGATGCAACCACGGTAAC-ACAGACCCGGA---GAGGACCAGTC--TGTGGCACTGAAGCGGGGCTCTCTCTCTCTCTCTCTCTGTCAGCCGGACGGAGCTGGCAATGAACACAATGCCCACGGCCTCATTCACGGACCGCCTAGCCCGAGACC------------ATTGCGAAAACAGTTGAGCACT---CGCCGCGTTCAGGTTGTGGTTGCGATTGCGGATACGCTTACGGCTGGAGCGCAGGACCAGCAA----------A--------GCCCGGCA-----A----------------------------A-------CAT-ATCCGGAGTGGAAATTTTCAGCAATTAA--AGC----AATCAA--A-GC-A-----------------------------ACGCAACCCA--T-------------C--------------ATCAGA------------GCA----GAG----------C------------A-----------TATC----------AG--------------------------------------------ATCAGAGGATCGGCTTGATTCGGCTCGGT-TCAGCGATGCTGACTAC---AGACATGGGCACAGCGG------CAGGGCCGACGCCGATCATCGTCAG------CAGC------AAGCCACAGAAAT
droPer2 scaffold_1:8602191-8602738 - GTGGACCTGGATTATGCAACAGCAG---ACAGTCGGAGGAGAGAGGG--------AGA----------------GGTGACAGACTGT---CCA-GAGACAGA-------------------CAGACAGACCGAGTAATTATCAGTGCCAGATTATTATCATCAGCAGCAGCTGCGATGCAACCACGGTAAC-ACAGACCCGGA---GAGGACCAGTC--TGTGGCACTGAAGCGGGGCTCTCTCTCTCTCTCTCTCTGTCAGCCGGACGGAGCTGGCAATGAACACAATGCCCACGGCCTCATTCACGGACCGCCTAGCCCGAGACC------------ATTGCGAAAACAGTTGAGCACT---CGCCGCGTTCAGGTTGTGGTTGCGATTGCGGATACGCTTACGGCTGGAGCGCAGGACCAGCAA----------G--------GCCCGGCA-----A----------------------------A-------CAT-ATCCGGAGTGGAAATTTTCAGCAATTAA--AGC----AATCAA--A-GC-A-----------------------------AAGCAACCCA--T-------------C--------------ATCAGA------------GCA----GAG----------C------------A-----------TATC----------AG--------------------------------------------ATCAGAGGATCGGCTTGATTCGGCTCGGT-TCAGAAATGCTGAGTAC---AGACATGGGCACAGCGG------CAGGGCCGACGCCGATCATCGTCAG------CAGC------AAGCCACAGAAAT
droWil2 scf2_1100000004945:417540-417590 + ---------------------------------------------------------------------------------------------------------------------------------------AATTATCAGTGCCAGATTATTATCAGT----GCAGCGGCTACGGTGCAACGTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:14461091-14461196 - G----TGTGGATTATACAATCCAGATTGACAACTG-----------------------------------------------------------GAGGCAGACAAACACGTAGTCTGTTATTTAACTGCTATAACAATTATCAGTGCTGGATTATTATCAGT----GCAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:15413675-15413811 - GTTGATGCGGATTACACAATCGGGATAGACAACTGCTGGGGAAACGG--------CGATTGGA-----------CACAACAGTCTGA---CTG-GC-------------------TGTTAGTTAACTAGTATAATAATTATCAGTGCTGGATTATTATCAGT----GCAACGG---TGCAGCGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:1479654-1479750 + -----TGTGGATTATACAACCGAGATAGTCAAA----GG-----------------------------------------------------------------------CAGACTGCTCGTTAATAACTATTGTAATTATCAGTGCTAGATTATTATCAGT----GCAACGG---TGCAGCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGATTTCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGACGATGCAGCGACGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGA--AGG---GAATTAA--C-AG-AG---GAG-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGGA---G-GAGACCTTAA-AAGCCTGCAAAACCC-CCACTAA-----------------------------ACCCGAGATGTTGCCCAC--GGGACAAGGGCAGTTTGA------CGGC---------------------------CGGC------AGGCCGCAGAAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................GCAGCGACGATGCAGCGACGGTGAC-G--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020020
....................................................................................................................................................................................................................................................................................................................................................................GCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0021100
.............................CAGACGCTGGAGATTTCG--------AG------------------------------------AGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................ATTTCG--------AG------------------------------------AGGGGTTCG-------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................................................................................................................................................................GCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
...............................................................................................................................................................................ATGCAGCGACGGTGAC-G--G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................GC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
...............GCAACTGCGG---CCAGACGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGGA---G-GAGACC...........................................................................................................................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................ACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------T........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...............................................................................................................................................................................................................CA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................TGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
........................................................................................................................................................................................................................................................................................................................................................AAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGAGCAGGAGCG-C--------TCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
GCTAGTGCGGATTATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGGA---G-GAGACCTT.........................................................................................................................................................2611.0010010
.......................................................................................................................................................................................................................................................................................................................................................................GC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
......................................................................................................................................................................................................................................................................................................................................................................CGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001
........................................................................................................................................................................................................................................................................................................................................................................C---CGACG--------------------------------------------------AGCAGCGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...AGTGCGGATTATGCAACTGCGG---CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAATTGCCCATAATTGA--AGG---GAAT...........................................................................................................................................................................................................................................................................................................................................2811.0010010
............................................................................................................................................................................................................................................................................................................................................................ACATCCGAGCCGC---CGACG--------------------------------------------------AGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
..............................................................................................................................................................................................................................................................................................................................................................................ACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
......................................................................................................................................................................GCAGCGACGATGCAGCGACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.........................................................................................................................................................................GCGACGATGCAGCGACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................ATAGACGACTTAATTATCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGGA---G-GAGAC............................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--C-AG-AG---GAG-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGG.......................................................................................................................................................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGAGATGTTGCCCAC--GGAC..........................................................................2211.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------C-----------------------------------------------AG----------G------------A-----------G------------AAGGAGGA---G-GA...............................................................................................................................................................1820.5010100
droSim2
GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGACGATGCAGCGACGGTGAC-G--GTTACAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGA--AGG---GAATTAA--C-AG-AG---GAG-----------------------------------------C-----------------------------------------------AG----------G------------A-----------GCAG---------GAGGAGGA---G-GAGACCTTAA-AAGCCTGCAAAACC--CCACTAA-----------------------------ACCCGAGATGTTGCCCAC---GGACAAGGGCAGTTTGA------CGGC---------------------------CGGC------AGGCCGCAGAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................GAGAGATCG--------AG------------------------------------AGGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00210100000000000000
...AGTGCGGATTATGCAACTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
GCTAGTGCGGATTATGCAACTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.........................................AGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC---GGACAAGGGCAGTTTGA------CG....................................................2211.00100100000000000000
......................................GAGAGATCG--------AG------------------------------------AGGGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
................................................................................................................................................................................................G--GTTACAGA---GCA--------------------------------CA------------CCGGTTGC------------GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----G----------------------------A-------AAT-ATCCGGAGTGAT.......................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..........................................................................................................................................................................CGACGATGCAGCGACGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACG--------------------------------------------------AGCAGCGAGCAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.....................................GGAGAGATCG--------AG------------------------------------AGGGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...........................................................................................................................................................................................TGAC-G--GTTACAGA---GCA--------------------------------CA------------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.............................CAGACGCTGGAGAGATCG--------AG------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................................................................................................ACGGTGAC-G--GTTACAGA---GCA--------------------------------CA------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACC--CCACTAA-----------------------------ACCCGAGAT.........................................................................................2211.00110000000000000000
............................................................................................................................................................................................GAC-G--GTTACAGA---GCA--------------------------------CA------------CCGGTTGC------------GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACC--CCACTAA-----------------------------ACCCGAGATGTT......................................................................................2411.00100000000000100000
..............................AGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------GAGGAGGA---G-GAGACC...........................................................................................................................................................1820.50100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGA---G-GAGACC...........................................................................................................................................................1590.11100000000001000000
dm3
GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGACTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGCGACGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACAACCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAACAGGAGCT-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGA--AGG---AAATTAA--C-AG-AG---GAG-----------------------------------------A-----------------------------------------------AGGGAGGCGCAGGAGAAGGAGGAGGA-----------GGAG---------GAGGAGGA---G-GAGACCTTAA-AAGCCTGTAAAATC--CCAATAA-----------------------------ACCCGAGATGTTGCCCAC---GGACAAGGGCAGTTTGA------CGGC---------------------------CGGC------AGGCCGCAAAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................ACG--------------------------------------------------AGCAGCGAACAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGA-----------GGAG---------GAGGAGGA---G-GAG..............................................................................................................................................................2753.60180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000001000000000000000000000000000000000000000000220002100100000000000000000000000000000000000000000000000000000000000000000000000000060000000000100000000000
.......................................................AG------------------------------------AGGGGTTCG-------------------CAGATAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GCCGC---CGACG--------------------------------------------------AGCAGCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCT-C--------TCCCAGCC-----G----------------------------A-------AAT-ATCC...............................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TAATTATCAGTGCCAGATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GACGGTGAC-G--GTTGCAGA---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAC---GGACAAGGGCAGTTTGA------C.....................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAGACGCTGGAGAGATCG--------AG------------------------------------AGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CGGCGATGCAGCGACGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................GAGATCG--------AG------------------------------------AGGGGTTCG-------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGACG--------------------------------------------------AGCAGCGAACAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..TAGTGCGGATTATGCAACTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GACG--------------------------------------------------AGCAGCGAACAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................................G------------------------------------AGGGGTTCG-------------------CAGATAGACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAA--C-AG-AG---GAG-----------------------------------------A-----------------------------------------------AGGGAGGC........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................GGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................TGCAGCGACGGTGAC-G--GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................CGC---CGACG--------------------------------------------------AGCAGCGAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................TATCACC----GCAGCGGCGATGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGACG--------------------------------------------------AGCAGCGAACAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ACCGAGCCGC---CGACG--------------------------------------------------AGCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGAACAGGAGCT-C--------TCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TGCAGCGACGGTGAC-G--GTTGCAGA---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACAGGAGCT-C--------TCCCAGCC-----G----------------------------A-------AAT-AT.................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCGGTTGC------------GGAATGC-------------------ATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................GCAGCGGCGATGCAGCGACGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGCAGA---GCA--------------------------------CA------------CCGGTTGC------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................AAACAACCGAGCCGC---CGACG--------------------------------------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TATTATCACC----GCAGCGGCGATGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-ATCCGGAGTGATAATTGCC................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA--AGG---AAATTAA--C-AG-AG---GA..........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCATAATTGA--AGG---AAAT...........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGCC-----G----------------------------A-------AAT-ATCCG..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGCAGTTTGA------CGGC---------------------------.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCCCATAATTGA--AGG---AAAT...........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTTGCCCAC---GGACAAGGGCAGT................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CGATGCAGCGACGGTGAC-G--GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................G--------AG------------------------------------AGGGGTTCG-------------------CAGATAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAGCT-C--------TCCCAGCC-----G----------------------------A-------AAT-...................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CGACG--------------------------------------------------AGCAGCGAACAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGCT-C--------TCCCAGCC-----G----------------------------A-------AAT-...................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGA............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TATTATCACC----GCAGCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCC-----G----------------------------A-------AAT-ATCCGGAGT..........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGA-----------GGAG---------GAGGAGGA---G-GAGAC............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GACG--------------------------------------------------AGCAGCGAACAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCC-----G----------------------------A-------AAT-ATCCGGAGTGAT.......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGA------CGGC---------------------------CGGC------AGG..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATTGA--AGG---AAATTAA--C-C...................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--CCAATAA-----------------------------ACCCGAGATGTT......................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA-----------------------------ACCCGAGATGTTGCC...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAA--C-AG-AG---GAG-----------------------------------------A-----------------------------------------------AGGGA...........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................AG------------------------------------AGGGGTTCG-------------------CAGATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................A---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA--AGG---AAATTAA--C-AG-.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................GAGAGATCG--------AG------------------------------------AGGGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AG-AG---GAG-----------------------------------------A-----------------------------------------------AGGGAGGCGCAGGAGA................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................CGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCGC---CGACG--------------------------------------------------AGCAGCGAACAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GCCGC---CGACG--------------------------------------------------AGCAGCGAACAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------------------------AGCAGCGAACAGGAGCG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGAGGA-----------GGAG---------GAGGAGGA---G-.................................................................................................................................................................2560.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000020000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGAGGA-----------GGAG---------GAGGAGG.......................................................................................................................................................................2380.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000200001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGA-----------GGAG---------GAGGAGGA---G-GA...............................................................................................................................................................2660.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGA-----------GGAG---------GAGGAGGA---G-GAGA.............................................................................................................................................................2550.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGAGGA-----------GGAG---------GAGGAGGA---G-G................................................................................................................................................................2580.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000020000000000000000
droEre2
GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGATTTAATTATCAGTGCCAGATTATTATCACC----ACAGCGGCGATGCAGCGGCGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-C--------TCCCAGCC-----A----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGG--CGG---GAATTAA--C-AG-AG---GAG-----------------------------------------T-----------------------------------------------AGGTAGG-----------------------------------CAGAG---GAGGTGGA---G-GAGACCTTAAAAAGCCCGCAAAATC------TAA-----------------------------AACCGCGATGTTGCCCAC---CGACAAGGGCAGTTTGG------CGGC---------------------------CAGC------AGGCCGCAGAAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGG------CGGC---------------------------CAGC------AGGC.........1911.0011000000
GCTAGTGCGGATTATGCAACTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATCCGGAGTGATAATTG..................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
GCTAGTGCGGATTATGCAACTGCGG---CCAGACGCTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGATTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGCAGCGGTGAC-G--GTTGCAGA---GCA--------------------------------CA------------CCGGTTAC------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------ATTTCACAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCG-G--------TCCCAGCC-----G----------------------------A-------AAT-ATCCGGTGTGATAATTGCCCATAATTGA--AGG---GAATTAA--C-CA-AGGAGGAG-----------------------------------------T-----------------------------------------------AG----------G------ACGAGGA-----------GGAGGCAGAGGCAGAGGCGGA---G-GAGACCTTAA-AAGCCAGCAAACCC-----CTAA-----------------------------ACCCGAGATGTTGCCCAC---CGACAAGGGCAGCTTGG------CGGC---------------------------CAGC------AGGCCGCAGAAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAGGGCAGCTTGG------CGGC---------------------------.......................2111.00100010000000
.................................................................................................................................................................................................................................................................................................................................................................CGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................GACGATTTAATTATCAGTGCCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
......................................................................................................................................................................................................................................................................C------------GGAATGC-------------------ATTTAGT----------TACCTGACC------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
droEug1
GCTAGAGCAGATTATGCAACTGCGG---CCAGACTTTGGAGAGATTG--------AG------------------------------------AGGGGCCCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGC---GGTGAC-G--GTTGCGGA---GAG--------------------------------CA------------CCGGTTGC------------AGAATGC-------------------ATTTAGT----------TACCTGACT------------ATTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGAGCAGGAGCT-C-----TCGTCCCAGCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCTTATAATTAG--AGG---GAATTAA--C-AG-GG---GAGATCCC--------------------------G---------------AC--------------ATTAGA------------AAA----AAG----------G------------A-----------AAAC---------CAGCAGTA---A-AAAACCTTA-----------------------------------------------------------AAATGTTACCCAC---GGACAAGGGCAGCTCTT------TGGG---------------------------CCCC------AGGCCGCAGAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
GCTAGAGCGGATTATGCAACAGCGG---CCAGACTTTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGGCTTAATTATCAGCGCCAGATTATTATCACC----GCAGCGCCGATGCAGC---GGTGAT-G--GTTGTGGA---G-----------------------------------------------------------------------ATGC-------------------ATTTGGC----------TACCTGACC------------AGTTTAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGAG---------G-T--------CCCCATCC-----G----------------------------A-------AAT-ATCCGGAGTGATAATTGCCCATAATTGG--CGG---GAATTAA--CCAG-GG---GAGATTCCTG----------------------------------------AA------------------ACC-------------------------------A------------CAAAGCGAAA-AGAGC---------CCTGAGAAAAGGC-------------------C--ATC---------------------------------------CCAGAGATGCTGCCCAC---GGACAAGGGCAGTGCGGGAGGTGTGGG---------------------------CCCC------AGGCCGCAGAAATSizeHit CountTotal NormTotal
No Reads
droTak1
GCTCGAGCGGATTATGCAACAGCGG---CCAGACTTTGGAGAGATCG--------AG------------------------------------AGGGGTTCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCAATGCAGCGGTG---ATTGCCGACGAGGA---GAG--------------------------------TA------------CCGCTTGC------------GGAATGC-------------------ATCTAGT----------TACCTGACT------------ATTTCAAAAACATCCGAGCCGC---CGACGA------------------------------------------G------AGCAGAGAGCAGCAG-G-T--------CCACAGCC-----T------------TCA-------------AAAAAAATAGT-ATCCGGAGTGATAATTGCTAGTAATTAGCGGGG---GAATTAA--A-AA-A-----------------------------GAGAAACCTT--T-----------------------------TGAGG------------GAA----AAA--------------------------------------------------------------------------------AAAATCCT-------A----------------------------TCCAGTCATGCTGCCCAC---GGACAAGGGCAGTTCGG------CGGTCCCTG---------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCTAGAGCGGATTATGCAACTGCGG---CCAGACTTTGGAGAGAACG--------CG------------------------------------AGGGACCCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACA----GCAGCGGCGATGCAGCGGCGGTGAG-G--CTTGCGGA---GAT--------------------------------TA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACT------------GCTTCAAAAACATCCGAGCCGC---CGACG--------------------------------------------------AGCAGCGTTCAGGAGCG-C--------TCCTAGTC-----G----------------------------A-------AAA-AAA--AAGTGATAATTGCTTTTAATTGG--GGGC--GAATTA---------G---GAGATTCCCCAGTGACAACAA----CAG---------------------------------------TGAGA------------A------AAG---------------------------------A--------------------------A-------------------CAAAACCC-------AA------------------------------CGAGATGTTGACCAC---GGACAAGGGCAGTT---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCTAGAGCGGATTATGCAACTGCGG---CCAGACTTTGGAGAGATCG--------AG------------------------------------AGGGGCCCG-------------------CAGATAGACGGTTTAATTATCAGTGCCAGATTATTATCACC----GCAGCGGCGATGCAGCGGCGGTGAC-G--CTTGCGGA---GAT--------------------------------TA------------CCGGTTGC------------GGAATGC-------------------ATTTAGT----------TACCTGACT------------ATTTCAAAAACATCCGAACCGC---CGACG--------------------------------------------------AGCAGCGATCAGGACCGGG--------TCCCAGCC-----G----------------------------AAA-----AGT-ATCCGGAGTGATAATTGCTTTTAATTGG--AGG---GAATTAAAGC-CGAGG---GGGATTCC-----------------------------------------GAAATAGCG---AAATCGCTAGACCGC--GGGAAACAAAAA-AA----------------------------CACAAGAATAAC---------CC--------G------------------------------------AA------------------------------CGAAATGTTGGCCACAACGGACAAGGGCAGTT---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGAGTGCGGATTATGCAACTGCGG---CCAGACTTTGGAGAGATTG--------CG------------------------------------AGGGGTCCG-------------------CAGATAGACGGTTTAATTATCAGCGACAGATTACTATCACC----GCAGCGGCGATGCAGC---GGTGAC-G--GTTGCGGA---GAG--------------------------------CA------------CCGGTTGC------------GGAATGC-------------------ATTTGGC---TGCCC--TACCTGACT------------ATTTCCAAATCATCCGAGC---------------------------------------------------------------CAGCGAGCAGGAGCG-T--------TCCCAGCCCAACCA----------------------------G-------C-TAACCGGGAGTGATAATTGTCGGTAATTGG--AGGTTTCAATTAAAAC-GG-AA---GAGAATCCCC----------------------------------------AA------------------GCCAA-TCCCCAAGCCAAAA-AAG---------------------------------AATAAC---------CCTGAATACAAAG-AGAC-----------------------------------------------------------CCCGAAATGTTGGCCAC---GGACAAGGGCAGTTCGG------CTGG------------------------------CAGTCAGAGGCCACAGAAGASizeHit CountTotal NormTotal
No Reads
droKik1
G---------ATTATGCAACTGAGG---CCAGGCGGAGGAGCG-------------G------------------------------------AGAAGACCC-------------------CAGATAGACGGTTTAATTATCAGCGCCAGATTATTATCACC----GCAGCGGCGATGCAGC---GGTGAC-G--GTTCCGGA---GAGGACCCGTGTATGTGC------------TCTCTCT------------CCGGTTAC------------GGAATGC-------------------ACCCAGC----------TACCTGACCACAGCCGCCGCCAGTTCTAAAG--------CCGCCACCGACCG------------------------------------------C------AGCAGTGAGCAGGAGCG-CCCAGGTCGTCCCAGCC-----T----------------------------AAA-----AAT-ATCCGGAGTGCCAATTGCCAGTAATTAG--GCG---AAATTAA--G-AG-GG---GA----------------------------ACCCA--TTGACGGATCCCGAC--------------CCTAGATC------------A----AAC----------A------------CAAACTCAGAC-------------------ATACAGAG------------------------------------------------------------------AGACATGTTGGCCAC---GGACAAGGGCACGCCAA------TGGGGCCCACGCCAATCATAGTGAGCAGC--CGGC------AGG-GGCAGAAATSizeHit CountTotal NormTotal
No Reads
droAna3
G---------ATTATGCAACTGCGG---CCAGACAAAGAAGCGATAGACAGAGATTGGCTTGGGAAGAAGATTG----------CCGGCGGAGAGGGGTGCC-------------------CAGATAGACAA-GTAATTATCAGTGCCAGATTATTATCACC----GGAGCGGCGATGCAGCGACGGTGAC-G--GTTCCGGAGGAGAGGACCAGTA--AGTGC------------GCTCTCT------------CCGGCTAC------------GGAATGC-------------------ATAGCGC----------TACCTGACTACGGG------TATTCCAAAATCAGCCGAG----------------------------------------------------------------CAGCCAGCAGGAGCG-G--------TCCCCGCC-----AGAGCACCAGCCGCCCATCCAGACAGGCGC-------AAT-ATCCGTAGCGCCAATTAGGC-----------AG---CAATTAAA-C-AG-AT---TAG------------------CCCTGAGCTCC--GAGTT--CG------GAAAGACCCGGGACC--TCCAACTAT-CAGCCAAACCAAAAAATA---------------------------------A---------------------------------TT----------------------------------------------------------AAAAATGTTGGCCAC---GGACAAGGGCACGCCGG------CCAGCCCCACGCCGATCATCGTGAGCACCAGCGCC------AGGTCGCAGAAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAGGAGCG-G--------TCCCCGCC-----AGAG........................................................................................................................................................................................................................................................................................................................................................................................................................2612.002100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................G-G--------TCCCCGCC-----AGAGCACC....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.................................................................................................................................................................................................................................................................GGCTAC------------GGAATGC-------------------ATAGCGC----------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------CCAGCCCCACGCCGATCATCGTGAGC............................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AG-AT---TAG------------------CCCTGAGCTCC--GAGTT--CG------GA.........................................................................................................................................................................................................................................................................2811.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCCGATCATCGTGAGC............................2011.001000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGGGCACGCCGG------CCA...................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAGCG-G--------TCCCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..........................................................CTTGGGAAGAAGATTG----------CC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAC---GGACAAGGGCACGCC..............................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AT---TAG------------------CCCTGAGCTCC--GAGTT--...................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGCACCAGCGCC------A............1711.001000100
.................................CAAAGAAGCGATAGACAGAGATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGATCATCGTGAGCACC.........................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCC--GAGTT--CG------GAAAGACCCGGGAC.............................................................................................................................................................................................................................................................2811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AT---TAG------------------CCCTGAGCTCC--GAGTT--CG------GAAA.......................................................................................................................................................................................................................................................................2811.001000010
.....................................................................................................................................................GATTATTATCACC----GGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..............................................................................................................................................................................................................................................................................................................................................................AGCCGAG----------------------------------------------------------------CAGCCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331010000
droBip1
T---------ATTATGCAACTGCAG---CCAGACAAAGAAGCTATAGACAGAGATTGGCTAGAGAAGAAGAGTG----------CCG---GAGAGGGGTGCC-------------------CAGATAGACAA-GTAATTATCAGTGCCAGATTATTATCACC----GAAGCGGCGATGCAGCGACGGTGAC-G--GTTCCGGAGGAGAGGACCAGTA--AGTGC------------GCTCTCT------------CCGACTAC------------GGAATGC-------------------ATTGCGC----------TACCTGACTACGGG------TATTCCAAAACCAGCCGAG----------------------------------------------------------------CAACCAGCAGGAGCG-G--------TCCCCGCC-----AGAAAATCAGCCGCTTATCCAGACAGGCGC-------AAT-ATCCGTAGCGCCAATTA---------GG--AGG---CAATTAAA-C-AG-AT---TAG------------------CCCTGAGCTCC--AAGTT--CG------GATAGACCCGGGTCC--CCTAGCTTA-TAGCCAAACCAAAA-ATA---------------------------------A---------------------------------TT----------------------------------------------------------AAAAATGTTGGCCAC---GGACAAGGGCACCCAGG------CCAGCCCCACGCCGATCATCGTGAGCACCAGCGCC------AGGTCGCAGAAATSizeHit CountTotal NormTotal
No Reads
dp5
GTGGACCTGGATTATGCAACAGCAG---ACAGTCGGAGGAGAGAGGG--------AGA----------------GGTGACAGACTGT---CCA-GAGACAGA-------------------CAGACAGACCGAGTAATTATCAGTGCCAGATTATTATCATCAGCAGCAGCAGCGATGCAACCACGGTAAC-ACAGACCCGGA---GAGGACCAGTC--TGTGGCACTGAAGCGGGGCTCTCTCTCTCTCTCTCTCTGTCAGCCGGACGGAGCTGGCAATGAACACAATGCCCACGGCCTCATTCACGGACCGCCTAGCCCGAGACC------------ATTGCGAAAACAGTTGAGCACT---CGCCGCGTTCAGGTTGTGGTTGCGATTGCGGATACGCTTACGGCTGGAGCGCAGGACCAGCAA----------A--------GCCCGGCA-----A----------------------------A-------CAT-ATCCGGAGTGGAAATTTTCAGCAATTAA--AGC----AATCAA--A-GC-A-----------------------------ACGCAACCCA--T-------------C--------------ATCAGA------------GCA----GAG----------C------------A-----------TATC----------AG--------------------------------------------ATCAGAGGATCGGCTTGATTCGGCTCGGT-TCAGCGATGCTGACTAC---AGACATGGGCACAGCGG------CAGGGCCGACGCCGATCATCGTCAG------CAGC------AAGCCACAGAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................TGCAACCACGGTAAC-ACAGACCCGGA---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAC---AGACATGGGCACAGCGG------CAG...................................................2711.0010000000001
...................................................................................................................................................................................................................CCAGTC--TGTGGCACTGAAGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
.................................................................................................................................................................................................................................................................................................GCCCACGGCCTCATTCACGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...................................................................................................................................GAGTAATTATCAGTGCCAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................C-ACAGACCCGGA---GAGGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................GACCCGGA---GAGGACCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................GAGGACCAGTC--TGTGGCACTGAAGCGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
...............................................................................................AGACAGA-------------------CAGACAGACCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.0710000100000
.................................................................................................................................................................................................................................................CTCTCTCTCTCTCTCTGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
................................................................................................GACAGA-------------------CAGACAGACCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
droPer2
GTGGACCTGGATTATGCAACAGCAG---ACAGTCGGAGGAGAGAGGG--------AGA----------------GGTGACAGACTGT---CCA-GAGACAGA-------------------CAGACAGACCGAGTAATTATCAGTGCCAGATTATTATCATCAGCAGCAGCTGCGATGCAACCACGGTAAC-ACAGACCCGGA---GAGGACCAGTC--TGTGGCACTGAAGCGGGGCTCTCTCTCTCTCTCTCTCTGTCAGCCGGACGGAGCTGGCAATGAACACAATGCCCACGGCCTCATTCACGGACCGCCTAGCCCGAGACC------------ATTGCGAAAACAGTTGAGCACT---CGCCGCGTTCAGGTTGTGGTTGCGATTGCGGATACGCTTACGGCTGGAGCGCAGGACCAGCAA----------G--------GCCCGGCA-----A----------------------------A-------CAT-ATCCGGAGTGGAAATTTTCAGCAATTAA--AGC----AATCAA--A-GC-A-----------------------------AAGCAACCCA--T-------------C--------------ATCAGA------------GCA----GAG----------C------------A-----------TATC----------AG--------------------------------------------ATCAGAGGATCGGCTTGATTCGGCTCGGT-TCAGAAATGCTGAGTAC---AGACATGGGCACAGCGG------CAGGGCCGACGCCGATCATCGTCAG------CAGC------AAGCCACAGAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................CCGCGTTCAGGTTGTGGTTGCGATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATTCGGCTCGGT-TCA..............................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................CATTCACGGACCGCCTAGCCCGAGACC------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCGTCAG------CAGC------AAG..........1911.001001000
droWil2
---------------------------------------------------------------------------------------------------------------------------------------AATTATCAGTGCCAGATTATTATCAGT----GCAGCGGCTACGGTGCAACGTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................TTATCAGT----GCAGCGGCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................GATTATTATCAGT----GCAGCGGCTACGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
droVir3
G----TGTGGATTATACAATCCAGATTGACAACTG-----------------------------------------------------------GAGGCAGACAAACACGTAGTCTGTTATTTAACTGCTATAACAATTATCAGTGCTGGATTATTATCAGT----GCAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................AACAATTATCAGTGCTGGATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
GTTGATGCGGATTACACAATCGGGATAGACAACTGCTGGGGAAACGG--------CGATTGGA-----------CACAACAGTCTGA---CTG-GC-------------------TGTTAGTTAACTAGTATAATAATTATCAGTGCTGGATTATTATCAGT----GCAACGG---TGCAGCGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................TGGGGAAACGG--------CGATTGGA-----------CACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droGri2
-----TGTGGATTATACAACCGAGATAGTCAAA----GG-----------------------------------------------------------------------CAGACTGCTCGTTAATAACTATTGTAATTATCAGTGCTAGATTATTATCAGT----GCAACGG---TGCAGCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................AAA----GG-----------------------------------------------------------------------CAGACTGCTCGTTAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
..................ACCGAGATAGTCAAA----GG-----------------------------------------------------------------------CAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101
............................................................................................................................................................ATCAGT----GCAACGG---TGCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
........................................................................................................................................ATTATCAGTGCTAGATTATTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..........................AGTCAAA----GG-----------------------------------------------------------------------CAGACTGCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101

Generated: 05/17/2015 at 11:53 PM