ID:

dse_1343

 Coordinate:

scaffold_43:51766-51916 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.4 -12.1 -12.0

Flybase annnotation

CDS [Dsec\GM19330-cds]; exon [dsec_GLEANR_21052:4]; intron [Dsec\GM19330-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
star
  1. scaffold_26:21936-21957 +
  2. scaffold_19:709419-709440 +
  3. scaffold_12255:769-790 +
  4. dse_1343  scaffold_43:51884-51905 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTAAGTTTTTCTCATTTTATTTCCCAATATCTATCGACATCCCAGAAAAATGATAAAAAATCACACTAGCTGAGTAACGGGGATCTGATAGTCGTGTAACTCAACTATAGCATTTCCTCTTGTTTTAAATTAACTTTCTTCAAAAGTTTTTGTAATGATAATACATATATCCTAATACATAATTCCTCATTTGTTGCAGAACGTAGAACTTCCAGAATCGTTTTCTTTGGAACTAAAGAATTTGTTGGA
*************************************************************..((....((((....((((((((..(((((((..((.....)))))))..))..)))))..)))....................))))..))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
 V113
male body
......................................................................................................................................ACTTTCTTCAAAAGTTTTTG................................................................................................. 20 0 1 1.00 1 1 0 0
............................ATATCTATCGACATCCCAGAAAAATG..................................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0
.............................................................ATCACACTAGCTGAGTAACGGG........................................................................................................................................................................ 22 0 4 0.25 1 0 1 0
................................................................AGACTCGCTGAGCAACGGGGA...................................................................................................................................................................... 21 3 18 0.06 1 1 0 0
..............................................................TCACACTAGCTGAGTAACGGG........................................................................................................................................................................ 21 0 20 0.05 1 0 0 1
...............................................................CACACTAGCTGAGTAACGG......................................................................................................................................................................... 19 0 20 0.05 1 0 1 0

Anti-sense strand reads

AAAATTCAAAAAGAGTAAAATAAAGGGTTATAGATAGCTGTAGGGTCTTTTTACTATTTTTTAGTGTGATCGACTCATTGCCCCTAGACTATCAGCACATTGAGTTGATATCGTAAAGGAGAACAAAATTTAATTGAAAGAAGTTTTCAAAAACATTACTATTATGTATATAGGATTATGTATTAAGGAGTAAACAACGTCTTGCATCTTGAAGGTCTTAGCAAAAGAAACCTTGATTTCTTAAACAACCT
*************************************************************************************************..((....((((....((((((((..(((((((..((.....)))))))..))..)))))..)))....................))))..))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
 V113
male body
...............................................................................................................................................................TATTATTTATATAGGATTAT........................................................................ 20 1 2 0.50 1 1 0 0
..........................................................................................................................................................................................................................TAGCAATAGAAACTTGGATTT............ 21 3 3 0.33 1 0 1 0
............................................................TTAGTGTGATCGACTCATTGC.......................................................................................................................................................................... 21 0 3 0.33 1 1 0 0
..............GTAAAATAAAGGGTTATAGATAGC..................................................................................................................................................................................................................... 24 0 16 0.13 2 0 2 0
..............................TAGGTAGCTGTAGGGTCTTT......................................................................................................................................................................................................... 20 1 10 0.10 1 1 0 0
...................................................................GATCGACTCATTGCCTCTCGACTAT............................................................................................................................................................... 25 2 12 0.08 1 1 0 0
.......AAAAAGAGTAAAATAAAGGGTTATAGAT........................................................................................................................................................................................................................ 28 0 12 0.08 1 1 0 0
...........AGAGTAAAATAAAGGGTTATAGAT........................................................................................................................................................................................................................ 24 0 16 0.06 1 1 0 0
.............AGTAAAATAAAGGGTTATAGATAGC..................................................................................................................................................................................................................... 25 0 16 0.06 1 1 0 0
............GAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0
...........AGAGTAAAATAAAGGATTATAGAT........................................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0
..........................................................................TCTTTGGCCCTAGACTATCAT............................................................................................................................................................ 21 3 20 0.05 1 0 0 1
....................TAAAGGGTTATAGATAGC..................................................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_43:51716-51966 - dse_1343 TTTTA-----AGTTTTT-------------------CTCATTTTAT------------TT-CCCAATATCTATCGACATCCCAGAAAAATGA-------------TAAAAAATCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGGGATCTGATAGTCGTGT-AACTCAACTATAGC-ATTTCCT-------------------------CTTGTTTTAAA---------TT------AACTT---T-CTTC--------------AA---AAGTTTTTGTAATGA----------------TA-ATACATATAT----CCTA-A-TACATAATTCC-------T------------------------------------CATTTGTTGCA--------------------------------------------------GAA-CGTAGAACTTCCAGAATCGTTTTCTTTG-GAACTAA--A----GAATTTGTTG------------------GA
droSim2 2r:879397-879647 - dsi_1545 TTTTA-----AGTTTTT-------------------CTCATTTTAT------------TT-CCCAATATCTATCGACATCCCAGAAAAATGA-------------AAAAAAATCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGGGATCTGATAGTCGTGT-AACTCAACTATAGC-ATTTCCT-------------------------CTTGTTTTAAA---------TG------AACTT---T-CTTC--------------AA---AAGTTTTTGTAATGA----------------TA-ATACGTATAT----CCTA-A-TACATAATTCC-------T------------------------------------CATTTGTTGCA--------------------------------------------------GAA-CGTAGAACTTCCAGAATCGTTTTCTTTG-GAACTAA--A----GAATTTGTTG------------------GA
dm3 chr2L:21557213-21557455 - TTTAA-----ATATTTT-------------------TTCATTT-AT------------TC-CCCAATGTCTATCGATATCCCAGAAAAATTATGAAATTTCTCGTTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTGAGTAACGGGTATCTGATAGTCGAGG-AACTCGACTATAAC-ATTCTCTCATGTTAATATATATAATTTATTTAATTGCTTTCTA---------TT------ATTTA---T-TGA---------------------------------------------------------------T----TCAA-A-TTTATTAGATT-------G------------------------------------CAATTGTTGCA--------------------------------------------------TCA-AT------------------------------------G----TTAATTGATGGAATTATTCTCTAGAACTGA
droEre2 scaffold_4929:20395442-20395732 - TTTTA-----AGTGTTT-------------------TTCATTTTATAATATTATTTTTTA-CAACATTTTTACCGATATTCCAGAAAA-TTTTGAAATTT--------------------------------------------------------------------------------------------------------CTC---------TTAC---------------------------ACTAGCTGAGTAACGGGTATCTGATAGTCAAGG-AACTCCACTATAAC-ATTCTAT-------------------------CTTGTTAAA-A---------TT------TG-TG-TTT-GATT----------------------TTTTTTATATAA----------------TA-AGA------T----AAAA-CA----TAATC---------------TG--TATAA-TCT-------------------------GTAA--------------GGACGTATTTGATAGCCTCATTTTTATTTCATTATAGAGTCATTGGCTCTACGGAATAGTTTTAAATG-GGATTAATTG----TAAAGTGTTG------------------GA
droYak3 3R:425525-425720 + TTTTA-----ATTGTTT-------------------GTCATTTTAT------------TGCCCCAATTTCTATCGATATTCCAGCAAA-TGT-------------TTGC------------------------------------------------------------------------------------------------AC---------CTCC---------------------------ACTAGCTGAGTAATAGGTATCTGATAGTCGAGC-AACTCGACTATAGC-AATTCCT-------------------------CCTGTTTAA-A---------TT------AGTTT---T-GTTTATTTAGTCACAATCAATTAAAGTTT---A---------------------------------------GTA-A-TAGCTATCTGC-------T------------------------------------TGT-----------------------------------------------------------------------------------------------------------TTTTTTCA------------------GA
droEug1 scf7180000409464:346032-346224 + CTCTG-----A---------------------------CA-------------------------ATAGGTGGCG-----------------------------------------------------------------------------------------------------------------------------------CCTTGTGAATTTCCACTAGCAAAATTAATATTTTAAAATTGTGTAAAACAGTAACGGGTATCTTATAGTCGCGG-CACTCGACTATAGC-GTTTCCT-------------------------CTTGTTTTTTA---------TTTT----AGA-----T-------------------------------------TG----------------TG-ATATATGTAT----ACTA-ACTATTTA-------------------ATGCTTCT------------------------GTTG--ACC--------------------------------------------------AAA-C--------------------------------------------------------CATTCAGAAGTCCCAG
droBia1 scf7180000302411:70048-70276 - TAATT--------TGCT-------------------GCTATATAAT------------AT-CTCCATTTTTATTT---------------------------------------------------------------------------------------------------------------------------------TTC---------TCCC---------------------------TCAAGCTGAGTAACGGGTATCTGATAGTCGAGG-CACTCGACTATAGC-GTTCTTC-------------------------ATTGTTTTTAA---------GTT-----TAAT----TTTTAA--------------AA---GACTTATGGAATTTT----------------TA-A--------T----TTAA-A-TGCCAAAAACTACA----T------------------------------------CTATTGTATTAAAAGT--TACAACT-TACAAATTTA-------------------------------------TTCGTGTCTCGT--TCTATT-TTGATAA--C----AAATTTTTT---------------------
droTak1 scf7180000415871:358479-358782 + CAATA--------TTTTGGAAAAGTAAAAATGCAGTTTTATTGTGT------------TT-ATCAATACCTATCGAAATG---------------------------------------------------TAGAAGAAATTTTTTAAATCGGACCATTCGTTAAAAAGTTACGGCGGATCAAAGTTTTTCTCCATCTCTTTCGCAC---------TCCC---------------------------TTTAGCTGAGTAACGGGTATCTGATAGTCGGGG-CACCCGACTATAGC-GTTCTCT-------------------------CTTGTTTTTAT---------TT------AA-----------------------------------------------------------------------------------------AAAA-------------------TGTTTCCATTTAAAAAAATCCTGAAATTTCATTAGATACA--------------------------------------------------AAG-GGTTGCACTTTTAAAATGATTTGACTCC-ATAACAA--AACATGAATTCGTT---------------------
droEle1 scf7180000490284:3099-3269 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTGAGTAACGGGTATCTAATAGTCGTGA-AACTCGACTATATC-GTTTTCT-------------------------CTTGTTTTTTA---------TTT-----CCAC----TTCTGC--------------TG---AACTGATTTAGAT---------------------CA--TTGATCTTATTTTA------CTAAAAAAACATTCTTCATATA---TAC---------------------------------GGTAGATTACG-----------------------------------------CCA-CGTAAAACT-C---GATTG--------------------------TTTTCTCG------------------GG
droRho1 scf7180000777846:24184-24419 + TTTGA-----ACTTTTT-------------------GTCCTTTT--------------TT-CCTGTGGTCACTCTAATTCACATTATGTTAA-------------TGCAAAATCT--------------------------------------------------------------------------------------------------------A---------------------AAGTTGTTTAGCTGAGTAACGGGTATCTAATAGTCAAGG-CACTCGACTATAGC-GTTCTCT-------------------------CTTGTTTCATT---------TA------AAATC-TTT-CCCC----------------------TTTTTATCATAT----------------TA-ATA------T----AATA-CA----CAATT---------------AGATCCC------------------------AAGATGATG----------------------------------------------------CTA-----TGACTTC----GACGTTTCCCATCGGATCTAA--A----TAAATTGATG--------------------
droFic1 scf7180000453926:409295-409390 + C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATCTGATAGTCGATT-CACTCGACTGTAGC-GGTTTCT-------------------------CCGT-------TTTTTTTTAT--------ATTT---T-TTTG--------------GT---GGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--A----AAACATATAG------------------CC
droKik1 scf7180000301689:53529-53655 - TAACC--------TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAG---------------------AC-----------------------------------------------------------------------------------------------------------------------TATTTTAATTAATATTA-AAGTGTATAC----GTTA-T-TAATGAATTGT-------TCATTTA---ATT---------------------------TGTTTTTA--------------------------------------------------GAA-TGTAGAACTTCCAGAATCGTTTTCCATG-GAATTAA--G----AAATTTGTTG------------------GA
droAna3 scaffold_13417:2491944-2492046 - AGAAA----------------------------------------------------------------------------------AATGT-------------A----------------------------------------------------------------------------------------------------T---------AGAA---------------------------AAGAGAGGAGTACAGGATATCATATAGTCGTGT-AACTTGACAACACCCATTCTCT-------------------------TTTGTTTTTT----------TT------AACTT---G-TTTA--------------TT---TAATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396707:342645-342808 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAATACCGGGTATAATATAGTCGGAA-AACTCGACTATAGCCGCCCTTT-------------------------CTTGTTTTGAA---------GA-----------------------------------T---AGA---------AGCTTATGTCAACTAGTTATACAA--GTATGT----CTTACT-TAAAAAATTAG-------TTATATG---TTTTA-CCA-------------------------ATAA--------------------------------------------------AAA-TGGTGAGCTTTCATTACTTTTTTCTT-----------------------------------------------
dp5 Unknown_singleton_537:4777-4952 - AAATG--------G------------------------TA-------------------------------------------------------------------AAAAA-CATATAAATTGAGCAACTTGGAAGACAATTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------AC---------TGTTGTCCATGTTATATAGTTTT----CAGC--------------AT---AAG---------TGT----------------AA-ATATAAGCAT----ATAA-A-TATATGTA-----------------TTGTTTTC-TTT-------------------------GACA--------------------------------------------------GAA-TGTTGAACTTCCTGAATCATTTTCTGTC-GAGCTAA--A----GAATTTGTTG------------------GA
droPer2 scaffold_43:582692-582867 + AAATG--------G------------------------TA-------------------------------------------------------------------AAAAA-CATATAAATTGAGTAACTTGGAAGACAATTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------AC---------TGTTGTCCATGTTATATAGTTTT----CAGC--------------AT---AAG---------TGT----------------AA-ATATAAGCAT----ATAA-A-TATATGTA-----------------TTGTTTTC-TTT-------------------------GACA--------------------------------------------------GAA-TGTTGAACTTCCTGAATCATTTTCTGTC-GAGCTAA--A----GAATTTATTG------------------GA
droWil2 scf2_1100000004401:835927-836010 + TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGTGC-AACTCAATTATGTT-ATATATG-------------------------ATTGTTTTCAC---------TT------TACTT---T-TGAA--------------TA---CAATTTTCAGAAT-A----------------TA-ATCTATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droVir3 scaffold_13324:2042033-2042134 - AATAATACTAAACTTTT-------------------CTTAATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-------------------------AATTTT----CA----------------------------------------------------------------------------------ATT--------------------TTTC-TTT-------------------------AACA--------------------------------------------------GAA-CGTTGAGCTTCCAGATTCATTTTCAGTG-GAATTAA--G----GAATTTATTG------------------GA
droMoj3 scaffold_4719:2662-2798 - AGAAT----------------------------------------------------------------------------------GAT---------------TAGAATATCA--------------------------------------------------------------------------------------------------------G---------------------------CTTAG-AGGGTTCAGGGTATCTCCTAGTCGAGCAGTCTCGACTAGAGC-CTTCTTA-------------------------CTTGTTTTTTA---------TT------AATTT---T-TGAC--------------TG---AACTGATTTTAATGA----------------AA-CTT------------TTA-A-CATATGATTCT-------A------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------AT
droGri2 scaffold_15110:23395297-23395375 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGGTTCAAGGTATATCGTAGTCGATCTCACTCGACTACAGC-ATTCTTT-------------------------CTTGTTTTGAA---------ATT-----TG-TT---T-CTTG--------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TTTTA-----AGTTTTT-------------------CTCATTTTAT------------TT-CCCAATATCTATCGACATCCCAGAAAAATGA-------------TAAAAAATCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGGGATCTGATAGTCGTGT-AACTCAACTATAGC-ATTTCCT-------------------------CTTGTTTTAAA---------TT------AACTT---T-CTTC--------------AA---AAGTTTTTGTAATGA----------------TA-ATACATATAT----CCTA-A-TACATAATTCC-------T------------------------------------CATTTGTTGCA--------------------------------------------------GAA-CGTAGAACTTCCAGAATCGTTTTCTTTG-GAACTAA--A----GAATTTGTTG------------------GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................ACTT---T-CTTC--------------AA---AAGTTTTTG...............................................................................................................................................................................................................................................2011.0011000
.................................................................ATATCTATCGACATCCCAGAAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2511000
...............................................................................................................ATCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGG.....................................................................................................................................................................................................................................................................................................................................................................................2240.2510010
................................................................................................................TCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGG.....................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
.................................................................................................................CA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGG......................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droSim2
TTTTA-----AGTTTTT-------------------CTCATTTTAT------------TT-CCCAATATCTATCGACATCCCAGAAAAATGA-------------AAAAAAATCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGGGATCTGATAGTCGTGT-AACTCAACTATAGC-ATTTCCT-------------------------CTTGTTTTAAA---------TG------AACTT---T-CTTC--------------AA---AAGTTTTTGTAATGA----------------TA-ATACGTATAT----CCTA-A-TACATAATTCC-------T------------------------------------CATTTGTTGCA--------------------------------------------------GAA-CGTAGAACTTCCAGAATCGTTTTCTTTG-GAACTAA--A----GAATTTGTTG------------------GASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTG-GAACTAA--A----GAATTTGTTG------------------GA26110.001000010053000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTG-GAACTAA--A----GAATTTGTTG------------------GA2717.00700000033000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-GAACTAA--A----GAATTTGTTG------------------GA2412.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTCTTTG-GAACTAA--A----GAATT.........................2512.00200100010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTCCAGAATCGT.....................................................1911.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTCCAGAATCGTTT...................................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------GAA-CGTAGAACTTCCAGAAT........................................................2111.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGAACTTCCAGAATCGTTTTCTT...............................................2611.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------GAA-CGTAGAACTTCCAGAA.........................................................2011.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTG-GAACTAA--A----GAATTTGTTG------------------G.2611.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA--A----GAATTTGTTG------------------G.1611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTG-GAACTAA--A----GAATTTGTTG------------------GA2511.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-GAACTAA--A----GAATTTGTT.....................2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGAATCGTTTTCTTTG-GAACT.......................................2511.00100100000000000000
...........................................................................................................AAAAATCA--------------------------------------------------------------------------------------------------------C---------------------------ACTAGCTGAGTAACGGGGA...................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CGTAGAACTTCCAGAATCGTTT...................................................2311.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTG-GAACTAA--A----GAATTTGTTG------------------..2311.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-CGTAGAACTTCCAGAATCGT.....................................................2311.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGCA--------------------------------------------------GAA-CGTAGAACTTCC.............................................................2311.00101000000000000000
.............................................................................................................................................................................................................................................................................GATAGTCGTGT-AACTCAACT...........................................................................................................................................................................................................................................................................................................................................................2020.50100100000000000000
...........................................................................................................................................................................................................................................................GCTGAGTAACGGGGATCTG...............................................................................................................................................................................................................................................................................................................................................................................1930.33100000000001000000
dm3
TTTAA-----ATATTTT-------------------TTCATTT-AT------------TC-CCCAATGTCTATCGATATCCCAGAAAAATTATGAAATTTCTCGTTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTGAGTAACGGGTATCTGATAGTCGAGG-AACTCGACTATAAC-ATTCTCTCATGTTAATATATATAATTTATTTAATTGCTTTCTA---------TT------ATTTA---T-TGA---------------------------------------------------------------T----TCAA-A-TTTATTAGATT-------G------------------------------------CAATTGTTGCA--------------------------------------------------TCA-AT------------------------------------G----TTAATTGATGGAATTATTCTCTAGAACTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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....................................................................................................CTCGTTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAG.................................................................................................................................................................................................................................................................................................................................................................................................20190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AC---------------------------ACTAGCTGAGTAACGGGTATC.................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGTC.........................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATCCCAGAAAAATTATGAAATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGAGG-AA..................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTC.........................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TATCTGATAGTCGAGG-AACTCGACA...........................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CGGGTATCTGATAGTCGAGG-A...................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000
.........................................................................................................TCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTGAGTAACGGG.....................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GTAACGGGTATCTGATAGTCGAGG-....................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTGATAGTCGAGG-AACTCGACTATA........................................................................................................................................................................................................................................................................................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGTCG........................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.................................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGAGG-....................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GTATCTGATAGTCGAGG-AAC.................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TATCGATATCCCAGAAAAATTATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CTAGCTGAGTAACGGGTATCTGATA............................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................T---------TCAC---------------------------ACTAGCTGAGTAACG.......................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AGCTGAGTAACGGGTATCTGAT.............................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TCAC---------------------------ACTAGCTGAGTAACGGGTATCTG...............................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CGATATCCCAGAAAAATTATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................C---------------------------ACTAGCTGAGTAACGGGTATCTGAT.............................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CGGGTATCTGATAGTCGA.......................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TATCGATATCCCAGAAAAATTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATAGT..........................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................TTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTGAGTAACG.......................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCTGAGTAACGGGTATCTGATA............................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TATCTGATAGTCGAGG-AACTCGACTA..........................................................................................................................................................................................................................................................................................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TATCCCAGAAAAATTATGAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCGAGG-....................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AC---------------------------ACTAGCTGAGTAACGGGTATCTG...............................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
..........................................................................................................................................................................................................................................................AGCTGAGTAACGGGTATCTGATAG...........................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..............................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGT..........................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AACGGGTATCTGATAGTCGAGG-A...................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTGATAGTCGAGG-AACTCGACTAT.........................................................................................................................................................................................................................................................................................................................................................25110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGAGG-AACT................................................................................................................................................................................................................................................................................................................................................................27120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGAGG-AA..................................................................................................................................................................................................................................................................................................................................................................29160.0610000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TATCTGATAGTCGAGG-AACTCG..............................................................................................................................................................................................................................................................................................................................................................22170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCGAGG-AAC.................................................................................................................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CTGATAGTCGAGG-AACTCGAC............................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TCGTTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................22180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
......................................................................................................CGTTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTGAG............................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCGATATCCCAGAAAAATTATGAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CGTTCGC------------------------------------------------------------------------------------------------AT---------TCAC---------------------------ACTAGCTGAGTAA.........................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CTCGACTATAAC-ATTCTCTC.............................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGTCGA.......................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTA-----AGTGTTT-------------------TTCATTTTATAATATTATTTTTTA-CAACATTTTTACCGATATTCCAGAAAA-TTTTGAAATTT--------------------------------------------------------------------------------------------------------CTC---------TTAC---------------------------ACTAGCTGAGTAACGGGTATCTGATAGTCAAGG-AACTCCACTATAAC-ATTCTAT-------------------------CTTGTTAAA-A---------TT------TG-TG-TTT-GATT----------------------TTTTTTATATAA----------------TA-AGA------T----AAAA-CA----TAATC---------------TG--TATAA-TCT-------------------------GTAA--------------GGACGTATTTGATAGCCTCATTTTTATTTCATTATAGAGTCATTGGCTCTACGGAATAGTTTTAAATG-GGATTAATTG----TAAAGTGTTG------------------GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTTTA-----ATTGTTT-------------------GTCATTTTAT------------TGCCCCAATTTCTATCGATATTCCAGCAAA-TGT-------------TTGC------------------------------------------------------------------------------------------------AC---------CTCC---------------------------ACTAGCTGAGTAATAGGTATCTGATAGTCGAGC-AACTCGACTATAGC-AATTCCT-------------------------CCTGTTTAA-A---------TT------AGTTT---T-GTTTATTTAGTCACAATCAATTAAAGTTT---A---------------------------------------GTA-A-TAGCTATCTGC-------T------------------------------------TGT-----------------------------------------------------------------------------------------------------------TTTTTTCA------------------GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.TTTA-----ATTGTTT-------------------GTCATTTTAT------------TGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
droEug1
CTCTG-----A---------------------------CA-------------------------ATAGGTGGCG-----------------------------------------------------------------------------------------------------------------------------------CCTTGTGAATTTCCACTAGCAAAATTAATATTTTAAAATTGTGTAAAACAGTAACGGGTATCTTATAGTCGCGG-CACTCGACTATAGC-GTTTCCT-------------------------CTTGTTTTTTA---------TTTT----AGA-----T-------------------------------------TG----------------TG-ATATATGTAT----ACTA-ACTATTTA-------------------ATGCTTCT------------------------GTTG--ACC--------------------------------------------------AAA-C--------------------------------------------------------CATTCAGAAGTCCCAGSizeHit CountTotal NormTotal
No Reads
droBia1
TAATT--------TGCT-------------------GCTATATAAT------------AT-CTCCATTTTTATTT---------------------------------------------------------------------------------------------------------------------------------TTC---------TCCC---------------------------TCAAGCTGAGTAACGGGTATCTGATAGTCGAGG-CACTCGACTATAGC-GTTCTTC-------------------------ATTGTTTTTAA---------GTT-----TAAT----TTTTAA--------------AA---GACTTATGGAATTTT----------------TA-A--------T----TTAA-A-TGCCAAAAACTACA----T------------------------------------CTATTGTATTAAAAGT--TACAACT-TACAAATTTA-------------------------------------TTCGTGTCTCGT--TCTATT-TTGATAA--C----AAATTTTTT---------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAATA--------TTTTGGAAAAGTAAAAATGCAGTTTTATTGTGT------------TT-ATCAATACCTATCGAAATG---------------------------------------------------TAGAAGAAATTTTTTAAATCGGACCATTCGTTAAAAAGTTACGGCGGATCAAAGTTTTTCTCCATCTCTTTCGCAC---------TCCC---------------------------TTTAGCTGAGTAACGGGTATCTGATAGTCGGGG-CACCCGACTATAGC-GTTCTCT-------------------------CTTGTTTTTAT---------TT------AA-----------------------------------------------------------------------------------------AAAA-------------------TGTTTCCATTTAAAAAAATCCTGAAATTTCATTAGATACA--------------------------------------------------AAG-GGTTGCACTTTTAAAATGATTTGACTCC-ATAACAA--AACATGAATTCGTT---------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTGAGTAACGGGTATCTAATAGTCGTGA-AACTCGACTATATC-GTTTTCT-------------------------CTTGTTTTTTA---------TTT-----CCAC----TTCTGC--------------TG---AACTGATTTAGAT---------------------CA--TTGATCTTATTTTA------CTAAAAAAACATTCTTCATATA---TAC---------------------------------GGTAGATTACG-----------------------------------------CCA-CGTAAAACT-C---GATTG--------------------------TTTTCTCG------------------GGSizeHit CountTotal NormTotal
No Reads
droRho1
TTTGA-----ACTTTTT-------------------GTCCTTTT--------------TT-CCTGTGGTCACTCTAATTCACATTATGTTAA-------------TGCAAAATCT--------------------------------------------------------------------------------------------------------A---------------------AAGTTGTTTAGCTGAGTAACGGGTATCTAATAGTCAAGG-CACTCGACTATAGC-GTTCTCT-------------------------CTTGTTTCATT---------TA------AAATC-TTT-CCCC----------------------TTTTTATCATAT----------------TA-ATA------T----AATA-CA----CAATT---------------AGATCCC------------------------AAGATGATG----------------------------------------------------CTA-----TGACTTC----GACGTTTCCCATCGGATCTAA--A----TAAATTGATG--------------------SizeHit CountTotal NormTotal
No Reads
droFic1
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATCTGATAGTCGATT-CACTCGACTGTAGC-GGTTTCT-------------------------CCGT-------TTTTTTTTAT--------ATTT---T-TTTG--------------GT---GGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--A----AAACATATAG------------------CCSizeHit CountTotal NormTotal
No Reads
droKik1
TAACC--------TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAG---------------------AC-----------------------------------------------------------------------------------------------------------------------TATTTTAATTAATATTA-AAGTGTATAC----GTTA-T-TAATGAATTGT-------TCATTTA---ATT---------------------------TGTTTTTA--------------------------------------------------GAA-TGTAGAACTTCCAGAATCGTTTTCCATG-GAATTAA--G----AAATTTGTTG------------------GASizeHit CountTotal NormTotal
No Reads
droAna3
AGAAA----------------------------------------------------------------------------------AATGT-------------A----------------------------------------------------------------------------------------------------T---------AGAA---------------------------AAGAGAGGAGTACAGGATATCATATAGTCGTGT-AACTTGACAACACCCATTCTCT-------------------------TTTGTTTTTT----------TT------AACTT---G-TTTA--------------TT---TAATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAATACCGGGTATAATATAGTCGGAA-AACTCGACTATAGCCGCCCTTT-------------------------CTTGTTTTGAA---------GA-----------------------------------T---AGA---------AGCTTATGTCAACTAGTTATACAA--GTATGT----CTTACT-TAAAAAATTAG-------TTATATG---TTTTA-CCA-------------------------ATAA--------------------------------------------------AAA-TGGTGAGCTTTCATTACTTTTTTCTT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAATG--------G------------------------TA-------------------------------------------------------------------AAAAA-CATATAAATTGAGCAACTTGGAAGACAATTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------AC---------TGTTGTCCATGTTATATAGTTTT----CAGC--------------AT---AAG---------TGT----------------AA-ATATAAGCAT----ATAA-A-TATATGTA-----------------TTGTTTTC-TTT-------------------------GACA--------------------------------------------------GAA-TGTTGAACTTCCTGAATCATTTTCTGTC-GAGCTAA--A----GAATTTGTTG------------------GASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TGTTGAACTTCCTGAAT........................................................1911.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAA--A----GAATTTGTTG------------------GA2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TGTTGAACTTCCTGAATCATTTTCT................................................2711.0010001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTC-GAGCTAA--A----GA............................1811.0010000000001
droPer2
AAATG--------G------------------------TA-------------------------------------------------------------------AAAAA-CATATAAATTGAGTAACTTGGAAGACAATTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------AC---------TGTTGTCCATGTTATATAGTTTT----CAGC--------------AT---AAG---------TGT----------------AA-ATATAAGCAT----ATAA-A-TATATGTA-----------------TTGTTTTC-TTT-------------------------GACA--------------------------------------------------GAA-TGTTGAACTTCCTGAATCATTTTCTGTC-GAGCTAA--A----GAATTTATTG------------------GASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCATTTTCTGTC-GAGCT.......................................2220.501100000
droWil2
TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGTGC-AACTCAATTATGTT-ATATATG-------------------------ATTGTTTTCAC---------TT------TACTT---T-TGAA--------------TA---CAATTTTCAGAAT-A----------------TA-ATCTATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AATAATACTAAACTTTT-------------------CTTAATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-------------------------AATTTT----CA----------------------------------------------------------------------------------ATT--------------------TTTC-TTT-------------------------AACA--------------------------------------------------GAA-CGTTGAGCTTCCAGATTCATTTTCAGTG-GAATTAA--G----GAATTTATTG------------------GASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AGAAT----------------------------------------------------------------------------------GAT---------------TAGAATATCA--------------------------------------------------------------------------------------------------------G---------------------------CTTAG-AGGGTTCAGGGTATCTCCTAGTCGAGCAGTCTCGACTAGAGC-CTTCTTA-------------------------CTTGTTTTTTA---------TT------AATTT---T-TGAC--------------TG---AACTGATTTTAATGA----------------AA-CTT------------TTA-A-CATATGATTCT-------A------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................TAGAATATCA--------------------------------------------------------------------------------------------------------G---------------------------CTTAG-AGGGTTC.........................................................................................................................................................................................................................................................................................................................................................................................23200.459000090
...........................................................................................................................................................................................................................................................................................CTCGACTAGAGC-CTTCTTA-------------------------CTTGT................................................................................................................................................................................................................................................................................................................24200.255000050
..........................................................................................................................................................................................................................................................................TCTCCTAGTCGAGCAGTCTCGACTAG.........................................................................................................................................................................................................................................................................................................................................................26200.102200000
..................................................................................................................................................................................................................................................................................TCGAGCAGTCTCGACTAGAGC-CTTCT................................................................................................................................................................................................................................................................................................................................................26200.051000010
................................................................................................................TCA--------------------------------------------------------------------------------------------------------G---------------------------CTTAG-AGGGTTCAGGGT....................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
............................................................................................................................................................................................................................................................................................................................................TTTTTTA---------TT------AATTT---T-TGAC--------------TG---AAC.....................................................................................................................................................................................................................................................24200.051000010
................................................................................................................TCA--------------------------------------------------------------------------------------------------------G---------------------------CTTAG-AGGGTTCAGGGTATC.................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
droGri2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGGTTCAAGGTATATCGTAGTCGATCTCACTCGACTACAGC-ATTCTTT-------------------------CTTGTTTTGAA---------ATT-----TG-TT---T-CTTG--------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:48 PM