ID:

dse_1320

 Coordinate:

scaffold_40:199346-199496 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.1 -22.0 -22.0

Flybase annnotation

CDS [Dsec\GM13027-cds]; exon [dsec_GLEANR_13453:7]; intron [Dsec\GM13027-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+
mature
  1. scaffold_433:6842-6866 +
  2. scaffold_4247:582-606 +
  3. scaffold_26:225733-225757 +
  4. scaffold_0:14331217-14331241 +
  5. scaffold_6:439183-439207 +
  6. scaffold_11:2801323-2801347 +
  7. scaffold_28:536207-536231 +
  8. scaffold_28:684678-684702 +
  9. scaffold_32:116407-116431 +
  10. scaffold_30:287579-287603 +
  11. scaffold_40:19316-19340 +
  12. dse_1320  scaffold_40:199455-199479 +
  13. scaffold_39:192686-192710 +
  14. scaffold_39:324264-324288 +
  15. scaffold_42:212348-212372 +
  16. scaffold_55:68439-68463 +
  17. scaffold_55:74881-74905 +
  18. scaffold_59:41330-41354 +
  19. scaffold_74:125865-125889 +
  20. scaffold_82:51976-52000 +
  21. scaffold_423:2771-2795 +
  22. scaffold_1692:328-352 +
  23. scaffold_2306:129-153 +
  24. scaffold_1:11851114-11851138 +
  25. scaffold_5:5807299-5807323 +
  26. scaffold_8:2265116-2265140 +
  27. scaffold_6:870587-870611 +
  28. scaffold_11:2861680-2861704 +
  29. scaffold_18:1260208-1260232 +
  30. scaffold_23:985243-985267 +
  31. scaffold_41:44296-44320 +
  32. scaffold_28:352461-352485 +
  33. scaffold_30:160313-160337 +
  34. dse_1746  scaffold_40:13706-13730 +
  35. scaffold_40:277290-277314 +
  36. scaffold_59:110436-110460 +
  37. scaffold_109:79186-79210 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTACGATTCAAATATCGCAAATATTACCTTGGTCGTTATGACTAGAGAGGTACGCATTAAAAACGTCTTTTATTGATACTTAATTATACCCATTATTCTACTATATATTAGATTCGATAATAGTATGTAACAGGTAGAAACGTTTATGACCAAATAAAGTATATATATTCTTGATCAGGATCAATAGACGAGTCGATCTGAACGTCGAGATCTCAGGATCCCACGCTTTTGAAAAATGTTTTATATTTAA
**************************************************.............((((((.(((((((..((....((((.............))))....))..))))))).)).))))..(((((.((..(((((((((((.....(((..........))).....)).)).)))))))..)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 M054
female body
 V114
embryo
.....................ATATTACCTTGGTCGTTATGACT............................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
...............................................................................................................................................................GTATATATATTCTTGATCAGGATCA................................................................... 25 0 20 0.50 10 0 10 0
...................................................................................................TACTATGTATTAGACGCGAT.................................................................................................................................... 20 3 2 0.50 1 0 0 1
...............................................................................................................................................................GTATATATATTCTTGATCAGGATCAA.................................................................. 26 0 20 0.30 6 0 6 0
................................................................................................................................................................................CAGGATCAATAGACGAGTCGAT..................................................... 22 0 6 0.17 1 1 0 0
....................................................................................................................................................................................................ATCTGAAGGTCGAGATTTC.................................... 19 2 8 0.13 1 0 1 0
...............................................................................................................................................................GTATATATATTCTTGATCAGGATCAAT................................................................. 27 0 20 0.10 2 0 2 0
...............................................................................................................................................................GTATATATATTCTTGATCAGGATC.................................................................... 24 0 20 0.05 1 0 0 1
...............................................................................................................................................................GTATATATATTCTTGATCAGGAT..................................................................... 23 0 20 0.05 1 0 0 1

Anti-sense strand reads

AGATGCTAAGTTTATAGCGTTTATAATGGAACCAGCAATACTGATCTCTCCATGCGTAATTTTTGCAGAAAATAACTATGAATTAATATGGGTAATAAGATGATATATAATCTAAGCTATTATCATACATTGTCCATCTTTGCAAATACTGGTTTATTTCATATATATAAGAACTAGTCCTAGTTATCTGCTCAGCTAGACTTGCAGCTCTAGAGTCCTAGGGTGCGAAAACTTTTTACAAAATATAAATT
**************************************************.............((((((.(((((((..((....((((.............))))....))..))))))).)).))))..(((((.((..(((((((((((.....(((..........))).....)).)).)))))))..)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
.........................................................................................................................................................................AGAACTAGTCCTAGTTATCTGCACAGCT...................................................... 28 1 7 0.14 1 1 0
........................................................................................................................................................................AAGAACTAGTACTTGTTATCTGCTCAG........................................................ 27 2 8 0.13 1 0 1
.............................................................................................................................................................................CTAGACCTAGTTATCTGCTCAGCT...................................................... 24 1 11 0.09 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_40:199296-199546 + dse_1320 TCTA--CGATTCAAATATCGCAAAT-----ATTACCTTGGTCGTTATGA----CTAGAGAGGTACGCA-TTAAAAA--------CGTCTTTTATTGATA-----------------------------------CTT-----------AATTATACCCAT--------------TATTCT---------------------ACT--ATATATTAGATTCGAT--AAT------AGTATGTAACAGGTAG----AAACGTTTATGACCAAATAAAGTATA-----TATATTCTTGATCAGGATCAATAGACGAGTCGATCTG------------------------------AACGTCGAGATCTCAGGATCC---------------CACGCTTTTGAAAAAT----GTTTT-ATATTTAA
droSim2 4:935428-935691 + dsi_17252 TCTA--CGATTCAAATATCGCAAAT-----ATTACCTTGGTCGTTATGA----CTAGAGAGGTACGCA-TTAAAAA--------CGTCTTTTATTGATA-----------------------------------CTT-----------AATTATACCCAT--------------TATTCT---------------------ACT--ATATATTAGATTCGAT--AAT------AGTATGTAACAGGTAG----AAACGTTTATGACCAAATAAAGTATA-----TATATTCTTGATCAGGATCAATAGACGAGTCGATCTG------------------------------AACGTCGAGATCTCAGGATCCG-AA-CTCCCACTCCCACGCTTTTAAAAAAT----GTTTT-ATATTTAA
dm3 chr4:1151163-1151425 + TCTA--CGATTCAAATATCGCAAAT-----ATAACCTTGGTCGTTATGA----CTAGAGAGGTACGCA-TTAAAAT--------CGTCTTTTATTTATA-----------------------------------CTT-----------AATTATACCCGT--------------TATTTT---------------------ACT--ACATATTAGATTCGTT--AAA------AGTATGTTACAGGTAG----AAACGCTTCCGACCAAATAAAGTATA-----TATATTCTTGATCTTGATCAATAGTCT-------------------------CTGGCCGTCCGTATGAACG-TGAGATCTCAGGATCTC-AA-CTC------CCACACCTTTGAAAAAT----GTTTTGATATTTTA
droEre2 scaffold_4929:20024181-20024428 - TA----CAATTAAAACATTG---A----------TTTCA--CACTGA--ACTTCAAAGGATACACGCA-ATAGAAA--------AGTATTAGCAAA----------------------------TCAATTAAAAGCT----AA----TATTTATACCCGT--------------TACTCT----TA--G-----AGT-AAAAGG--ATATAATAGATACGTTG-AAA------AGTATGTAACAGGCAGAAGGAAACGTTT----------GAAGTATC-----TATATTCTTGATTAGGATCAATAGCCGAGTCGATCTGACCATGTCCGT----CCGTCTATTCGTATGAACGCCTCCATCTCAGG-----------------------------------------------------
droYak3 v2_chr2L_random_028:1723335-1723628 + ACAA--TAATGCAATTATAACAATT-----ATAATTAATGTTGT-----------------------------CAG--------TGTTATTACTTGAAATATATTATTCGTCTGATTGTGTTGTTC--------GAT-----------TATTATACCCGT--------------TACTCG----TA--G-----AGT-AAAAGG--GTATACTAGATTCGTTG-AAA------AGTATGTAACAGGCAGAATGAAGCGTTTCCGACCATATAAAGTAAA-----TATATTCTTGATCAGGACCAATAGCCGAGTTGATATGACCATGTCCGTCTGTCTGTCCGTCCGTATGAACGCTGTGATCTCAGGAACTACAAAA----------------------GCTAGAAAGTT-GAGA-TTAA
droEug1 scf7180000408795:9433-9713 - TTTA--CAATTCGTACACAT---GGTAAAGATTAGTTTT------AA--TCTTTTAGAAATATATAATGTTAAAAA--------TATTTTTACATAATA-----------------------------------TTTAACTTC----TGTTTATACTCCT--------------TACTCG----TA--G-----AGG-AAGAGG--GTACATTAGATTCGTTG-AAA------AGTATGTAACAGGTAGTAGGAAGCGCTTCCGACCCTATAAAGTATA-----TATATTCTGGATCAGGATGAATAGCGAGGACGATTGAGCCATGTC----------------CGTATGAACGCTGAGATCTCCGAAACTATAAGA----------------------GATAAAAAGTT-GAGA-TTAA
droBia1 scf7180000302512:29459-29714 - TTCA---------AAAATTGTAACT-----ATTTTTTTAGT--TTATCA----CAGCA----TAC--A-CTTACAA------A-T--------TTTGTA-----------------------------------TTT-----------TATTATACCCGT--------------TACTCG----TA--A-----AGT-AAA------------ATATTCGTCA-GAA------AGTATGTAACAGGTAAAAGGAAGTGTTTCCGACACCAAAAAGTATA-----TATTTTCTTAATCAGGATCACTAGCCGATTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTATGAACGCTGAGATCTCGGAAACCATAAAA----------------------GCTAGAATATT-----CTTAC
droTak1 scf7180000414750:54484-54756 + GGTT--CAATTCC-----CGCTAAC-----AACACTGTTTTTTTTGTAA----TTAGTAA-------A-CTAACAA------CTTAA-CTTTTTTAATA-----------------------------------CGT-----------TTTTATACCCGT--------------TACTCG----TA--G-----AGT-AAAAGG--GTATATTAGATTCGTGC-AAA------AGTATGTAACAGCTAA----AAGCGTTTCCGACCCCATAAAGTATA-----TATATTCTTGATCAGGGGCACTAGCCGAGTCGATCTAGCCATGTCCGT----CTGTCCGTCTGTATGAACGCTGAGATCTCAGAAACTACAAAA----------------------GCTAGAAGGTT-GAGATTTCC
droEle1 scf7180000491104:382295-382575 - TAAA--TGGTTCTTGTTTCAAAAAT-----G--TTCTTACTTAATTGTG----TTAGAATGATATGCA-CGAAATT--------TATTTATCAT----------------------------TTTCGATGCAAAGCT-----------TTTTATACCCGT--------------TACTCG----TA--G-----ATT-AAAAGG--GTATATTATATTCGTTG-AAA------AGCAT----------GAAGAAAGCGTTTCCGACCCTAAAA--------------ATTCTTTATCAGCATCAATAGACAAGTCGATCTAGAGATGTCCGTCTGGCTGTCAGTGCGAATGAACTTCGAGATCTCGAGATCTT--------------CTTGTTTTCAAACAGT----GTTCT-AAATG-TA
droRho1 scf7180000779741:49342-49592 + TTTG--CGATTGA-ACAGGATGAAT-----ATTTTTGTTTTCATTGTA-----TTTTAAATATATGGATTTAAAAA--------TATGT---------------------------------------------GGT-----------ATTTATACCCGT--------------TACTCG----TA--G-----AGT-AAAAGG--GTATATTGTATTCGTGC-AAA------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA-----TATATTCTTGTTCAGGATCAGTC------------------------------TGTCTGTCCGTATGAACGCTGAGATTTCGAAAACTATAAAA----------------------GCTAGAAGATT-GGCATTTTG
droFic1 scf7180000453842:426555-426689 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------AGTATGTAACAGGTTGAAGAAAGCACTTGCGACCCCAGAAAGTATATAGTATATAATCCTGATCAGGATCATCAGACGAGTCGACTTATAAGTATAAGT-------------------------------------TG---------------CCACACCTTTTGGCAAC----GTTTAACTAAGTAA
droKik1 scf7180000299654:37968-38176 - TATA--AAATTAAAAAATATTACAT-----ATGTCCTCGGACTTAA----------------ATC--A-CTCAAGT------A-T---TTTACATGAA-----------AACCGTTGGCCCTGATCAACCACCAATT-----------TATTATACCCTT---------------------------------------GCAGG--GTATTATAATTTCAGTC-AGA------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA-----TATATTCTTGATCAGCATCAACAGCCGAGTCGATCT-----------------------------------------------------------------------------------------------------
droAna3 scaffold_12947:1561962-1562156 - TATA--CGATACATATATAT----------ATAATAATATATGCTGCTA----CTGGAAAGGTA------TAGAAA--------CGTTT--CATTC--T-----------------------------------TGT-----------TTTTATACCCTT------------------------------------G-CAGAGG--GTATTATAATTTTGGTC-AAA------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA-----TATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCAT-----------------------------------------------------------------------------------------------
droBip1 scf7180000396574:307930-308140 - CT-A--CAAATAAAATAAA---AA--------TACTGCGCGCGCCATGT----CAAGTGAGCCACG---TTAAAAA--------ATTTATTTTTTGATAT----------------------TTA---------CGT----TTTAAATTTTTATACCCTT------------------------------------G-CAGAGG--GTATTATAAGTTTGTCC-AAA------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA-----TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCAT-----------------------------------------------------------------------------------------------
dp5 Unknown_group_35:35756-35970 + TCTTACCAATTCCACTATT--AACG-----TTTATCTGGCACACTGG------TCTGAGAGTTATGGACCGTAAAA------A-TGATT------TCTT-----------------------------------TTT-----------TTTTATACCCGA--------------TATCCA----AAATG-----AGT-AAAGGG--TTATATTAGATTTGTGGTAAAAGTGGATATGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA-----TATATTCTTGATCAGCATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------
droPer2 scaffold_142:25388-25588 + TATA--TAAATTACATAT--TAAAT-----ATCACTTT-------A-------TTACAAA--------------ATTGTTAACACAC--ATTATTTAC------------------------------------GCT-----------TTTTATACCCGA--------------TACTCA----AAATG-----AGT-ATTGGG--GTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA-----TATATTCTTGATCAGCATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000009452:816-1085 + AT-G--CGA-----ATCCCGAAAAC-----ATTATTTTTCGCGCATTCA----TAAAAAGGAAATGCA-TTA-----------------TGTAGTATGA-----------------------------------CAT-----------TTTTATACCATA--------------CACCCA----TA--G-----GGT-GAAATG--GTATATTAAAGTCGCCA-AAA------TGTATGTAACAGGCAGAAGGAAGCTTCTCCAACCCCATTAAGTATA-----TATATTCTTGATCAGGATCAACAGCCGATGCGATCTAGTTTTGTCCGT----CCGTCTGTCCGTAGGAACACCTAGATCTCGGAGACTATAAGA---------------------CGCCATGGTATG-----TAGAC
droVir3 scaffold_12823:1656779-1656953 + TTC---------GAATACATTAATT-----ATTATTATGGTCGTC---------------------------------------------------------------------------------------------------------TTGAACCCAT--------------TAA-------AAATG-----GGT-ATAAGGCTATATATTGTATTTGTGCAAAATCCAAATGTATGCAACAGGCAGGAGGAAGCATCTCCGACCCCATAAAGAATA-----TATATTCTTGATCAGCATTGATAGCCGAGTCGATCTAACCAT-----------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:1643410-1643616 - CC-A--CGGTTCGAAAAATTCAGGG-----TATCTCTTAGTCGATAAGA-----------GGAGCAC-------TT--------TGTTTTTTATTTATT-----------------------------------ACT-----------TGTTATACCCTG--------------AACCCATTGAAAATG-----GGAAATCAGG--GTATAATGGTTTTGTG--AAA------AGTATGTAACGGGCAGAAGGAGGCGTGGCAGAACCCATAAAGTATA-----TATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTG----------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:13076830-13077025 - AA------------ATACCACAAAT-----TTTGTTTGA--GTTTGA--GTT-------------------TGAG------------------------------------------------------------------------TATTCATTGCCTTTTATTAATATCAATCAGCCA----GGAAGAATTTA-T-CAAAAT--GTATAATTGTTTTCTTT-AAA------AGTATGCAACAGGCAGGAAGAAGCTTCTTCGAACCCATAAATAATA-----TTTATTCTTAATCAGGATCAACAGGCGAGTCGATATAACCATTG---------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TCTA--CGATTCAAATATCGCAAAT-----ATTACCTTGGTCGTTATGA----CTAGAGAGGTACGCA-TTAAAAA--------CGTCTTTTATTGATA-----------------------------------CTT-----------AATTATACCCAT--------------TATTCT---------------------ACT--ATATATTAGATTCGAT--AAT------AGTATGTAACAGGTAG----AAACGTTTATGACCAAATAAAGTATA-----TATATTCTTGATCAGGATCAATAGACGAGTCGATCTG------------------------------AACGTCGAGATCTCAGGATCC---------------CACGCTTTTGAAAAAT----GTTTT-ATATTTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................AT-----ATTACCTTGGTCGTTATGA----CT..............................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCA.....................................................................................................................25200.501010000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCAA....................................................................................................................26200.3066000
........................................................................................................................................................................................................................................................................................................CAGGATCAATAGACGAGTCGAT.......................................................................................................2260.1710100
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCAAT...................................................................................................................27200.1022000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATC......................................................................................................................24200.0510010
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGAT.......................................................................................................................23200.0510010
droSim2
TCTA--CGATTCAAATATCGCAAAT-----ATTACCTTGGTCGTTATGA----CTAGAGAGGTACGCA-TTAAAAA--------CGTCTTTTATTGATA-----------------------------------CTT-----------AATTATACCCAT--------------TATTCT---------------------ACT--ATATATTAGATTCGAT--AAT------AGTATGTAACAGGTAG----AAACGTTTATGACCAAATAAAGTATA-----TATATTCTTGATCAGGATCAATAGACGAGTCGATCTG------------------------------AACGTCGAGATCTCAGGATCCG-AA-CTCCCACTCCCACGCTTTTAAAAAAT----GTTTT-ATATTTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................GTCGATCTG------------------------------AACGTCGAGATCTCAGGA....................................................2712.00200000010100000000
.....................................................................................................................................................................................................................................................................................................................CGAGTCGATCTG------------------------------AACGTCGAGA............................................................2212.00200000001001000000
.............................................................................................................................................................................................................................................................................................................................TCTG------------------------------AACGTCGAGATCTCAGGATCCG-A..............................................2712.00200000010100000000
...............................................................................................................................................................................................................................................................................................................................TG------------------------------AACGTCGAGATCTCAGGATCC.................................................2311.00100000000010000000
....................................................................................................................................................................................................................................................................................................................ACGAGTCGATCTG------------------------------AACGT.................................................................1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ATCTCAGGATCCG-AA-CTCCCACTC...................................2411.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................CGAGTCGATCTG------------------------------AACGTCGAGATCT.........................................................2511.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................TCTCAGGATCCG-AA-CTCCCACTCCC.................................2511.00100000000100000000
.....................AAAT-----ATTACCTTGGTCGTTATG.....................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.................................................................................................................................................................................................................................................................................................................TAGACGAGTCGATCTG------------------------------AACGTCGAGA............................................................2611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAGGATCCG-AA-CTCCCACTCCCACGC.............................2711.00100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................ATCTCAGGATCCG-AA-CTCCCACTCCC.................................2611.00100000000010000000
.....................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGACGAGTC..........................................................................................................22100.90900000900000000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCAAT...................................................................................................................27200.9018000120006000000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCA.....................................................................................................................25200.8517005000000010020000
........................................................................................................................................................................................................................................................................................................CAGGATCAATAGACGAGTCGATCT.....................................................................................................2460.83500000030020000000
................................................................................................................................................................................................................................................................................AAGTATA-----TATATTCTTGATCAGGA........................................................................................................................24200.7515002000013000000000
........................................................................................................................................................................................................................................................................................................CAGGATCAATAGACGAGTCGAT.......................................................................................................2260.67400000030100000000
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGACGAGTCGA........................................................................................................2570.57400000021000010000
.......................................................................................................................................................................................................................................................................................................TCAGGATCAATAGACGAGTCGATC......................................................................................................2460.50300000000003000000
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGACGAGTCGATC......................................................................................................2760.33200000000002000000
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGACGAGTCGAT.......................................................................................................2660.33200000002000000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGAT.......................................................................................................................23200.25500000000050000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCAA....................................................................................................................26200.25500000000210020000
...........................................................................................................................................................................................................................................TATGTAACAGGTAG----AA......................................................................................................................................................................16200.20400000001003000000
...............................................................................................................................................................................................................................................................................................................................TG------------------------------AACGTCGAGATCTCAGGAT...................................................2150.20100000000000010000
................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGACGAGTC..........................................................................................................2760.17100000000001000000
...................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGACGAGTCGAT.......................................................................................................2760.17100000000010000000
................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGACGAGT...........................................................................................................2660.17100000000000010000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATC......................................................................................................................24200.15300000000030000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATC............................................................................................................................18200.15300300000000000000
.........................................................................................................................................................................................................................................................................................................AGGATCAATAGACGAGTCGATCT.....................................................................................................2370.14100000000000010000
.....................................................................................................................................................................................................................................................................................TA-----TATATTCTTGATCAGGATCAATAGAC...............................................................................................................2870.14100000000010000000
............................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGAC...............................................................................................................2670.14100000000010000000
.....................................................................................................................................................................................................................................................................................TA-----TATATTCTTGATCAGGATCAATAGA................................................................................................................2790.11100000000100000000
...............................................................................................................................................................................................................................................................................AAAGTATA-----TATATTCTTGATCAGGA........................................................................................................................25200.10200010000010000000
.....................................................................................................................................................................................................................................................................................TA-----TATATTCTTGATCAGGATCAATA..................................................................................................................25200.10200000020000000000
.....................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGACGAGT...........................................................................................................21100.10101000000000000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGATCAATA..................................................................................................................28200.10200010001000000000
..................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGAT...............................................................................................................20200.05100000000001000000
..............................................................................................................................................................................................................................................................................TAAAGTATA-----TATATTCTTGATCAGGATC......................................................................................................................28200.05100010000000000000
.....................................................................................................................................................................................................................................................................................TA-----TATATTCTTGATCAGGATC......................................................................................................................21200.05100000000010000000
....................................................................................................................................................................................................................................................................................ATA-----TATATTCTTGATCAGGATCAATA..................................................................................................................26200.05100000000010000000
...........................................................................................................................................................................................................................................TATGTAACAGGTAG----A.......................................................................................................................................................................15200.05100000000010000000
................................................................................................................................................................................................................................................................................................................................G------------------------------AACGTCGAGATCTCAGG.....................................................18200.05100000000001000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGGA........................................................................................................................22200.05100000000100000000
..............................................................................................................................................................................................................................................................................TAAAGTATA-----TATATTCTTGATCAG..........................................................................................................................24200.05100010000000000000
................................................................................................................................................................................................................................................................................AAGTATA-----TATATTCTTGATCAGGAT.......................................................................................................................25200.05100010000000000000
....................................................................................................................................................................................................................................................................................ATA-----TATATTCTTGATCAGGATCAAT...................................................................................................................25200.05100000010000000000
dm3
TCTA--CGATTCAAATATCGCAAAT-----ATAACCTTGGTCGTTATGA----CTAGAGAGGTACGCA-TTAAAAT--------CGTCTTTTATTTATA-----------------------------------CTT-----------AATTATACCCGT--------------TATTTT---------------------ACT--ACATATTAGATTCGTT--AAA------AGTATGTTACAGGTAG----AAACGCTTCCGACCAAATAAAGTATA-----TATATTCTTGATCTTGATCAATAGTCT-------------------------CTGGCCGTCCGTATGAACG-TGAGATCTCAGGATCTC-AA-CTC------CCACACCTTTGAAAAAT----GTTTTGATATTTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................A----CTAGAGAGGTACGCA-TTAAA...........................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
.............AATATCGCAAAT-----ATAACCTTGGTCGT.........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................................................................................................T--------------TATTTT---------------------ACT--ACATATTA...............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGGCCGTCCGTATGAACG-TGA..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.CTA--CGATTCAAATATCGCAAAT-----.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GCCGTCCGTATGAACG-TGA..............................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTGGTCGTTATGA----CTAGAGA.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................GATCTC-AA-CTC------CCACACCTT..........................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CTTGATCAATAGTCT-------------------------CTGGCCGTC............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AACCTTGGTCGTTATGA----CTAGAGAGG.......................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AAT-----ATAACCTTGGTCGTTAT......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................T-----ATAACCTTGGTCGTTATGA----CTAGAAT.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CTTGGTCGTTATGA----CTAGAGA.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................AAT-----ATAACCTTGGTCGTTATGA----C...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TTCCGACCAAATAAAGTATA-----TAT......................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAAT----GTTTTGATATT...21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAAT----GTTTTGATATTTT.23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AA------AGTATGTTACAGGTAG----AA......................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droEre2
TA----CAATTAAAACATTG---A----------TTTCA--CACTGA--ACTTCAAAGGATACACGCA-ATAGAAA--------AGTATTAGCAAA----------------------------TCAATTAAAAGCT----AA----TATTTATACCCGT--------------TACTCT----TA--G-----AGT-AAAAGG--ATATAATAGATACGTTG-AAA------AGTATGTAACAGGCAGAAGGAAACGTTT----------GAAGTATC-----TATATTCTTGATTAGGATCAATAGCCGAGTCGATCTGACCATGTCCGT----CCGTCTATTCGTATGAACGCCTCCATCTCAGG-----------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................TATATTCTTGATTAGGATCAATAGCC...............................................................................................................26130.0811000000
.......................................................................................................................................................................................................................................................................................................................AGTCGATCTGACCATGTCC...........................................................................................19180.0611000000
droYak3
ACAA--TAATGCAATTATAACAATT-----ATAATTAATGTTGT-----------------------------CAG--------TGTTATTACTTGAAATATATTATTCGTCTGATTGTGTTGTTC--------GAT-----------TATTATACCCGT--------------TACTCG----TA--G-----AGT-AAAAGG--GTATACTAGATTCGTTG-AAA------AGTATGTAACAGGCAGAATGAAGCGTTTCCGACCATATAAAGTAAA-----TATATTCTTGATCAGGACCAATAGCCGAGTTGATATGACCATGTCCGTCTGTCTGTCCGTCCGTATGAACGCTGTGATCTCAGGAACTACAAAA----------------------GCTAGAAAGTT-GAGA-TTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACCAATAGCCGA.............................................................................................................24201.0020020000000000
...................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCG..............................................................................................................20200.9018000000000018
..........................................................................................................TTCGTCTGATTGTGTTGTTC--------GAT-----------TAT..............................................................................................................................................................................................................................................................................26180.8315020000000013
........................................................................................................TATTCGTCTGATTGTGTTGTTC--------GAT-----------.................................................................................................................................................................................................................................................................................25180.7213010000000012
...............................................................................................................................................................................................................................................................................................................AATAGCCGAGTTGATATGACC.................................................................................................2120.50101000000000
............................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGACCAATAGCCGA.............................................................................................................28200.30606000000000
..............................................................................................................................................................................................................................................................................................................................................................................GGAACTACAAAA----------------------GCTAGAAAGTT-GAGA-T...28200.25500500000000
.........................................................................................................................................................................................................................TCGTTG-AAA------AGTATGTAACAGGCAGAAT.........................................................................................................................................................................28200.20400000000004
.....................................................................................................................................................................................................................................................GCAGAATGAAGCGTTTCCGACCAT........................................................................................................................................................24120.17202000000000
...............................................................................................................................................................................................................................................................................................................................TGACCATGTCCGTCTGTCTGTCCGTCA...........................................................................27200.15303000000000
...................................................................................................TATATTATTCGTCTGATTGTGTTGTT........................................................................................................................................................................................................................................................................................................26180.11201100000000
........................................................................................................................................................................................TA--G-----AGT-AAAAGG--GTATACTAGATTCGT........................................................................................................................................................................................................27200.10200020000000
...............................................................................................................................................................................................................................................................................................................................TGACCATGTCCGTCTGTCTGTCCGTC............................................................................26200.10201100000000
....................................................................................TGTTATTACTTGAAATATATTATTCGTC.....................................................................................................................................................................................................................................................................................................................28100.10101000000000
...................................................................................................................................................................................................GT-AAAAGG--GTATACTAGATTCGTTG-A....................................................................................................................................................................................................26200.10200000020000
.............................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGACC......................................................................................................................18200.10220000000000
....................................................................................TGTTATTACTTGAAATATA..............................................................................................................................................................................................................................................................................................................................19110.09101000000000
.....................................................................................................................................................................................................................................................GCAGAATGAAGCGTTTCCGACCATA.......................................................................................................................................................25120.08100100000000
.........................................................................................................................................................................................................................................................AATGAAGCGTTTCCGACC..........................................................................................................................................................18170.06100100000000
...................................................................................................TATATTATTCGTCTGATTGTGTTGT.........................................................................................................................................................................................................................................................................................................25180.06100100000000
.........................................................................................................ATTCGTCTGATTGTGTTGTTC--------GAT-----------.................................................................................................................................................................................................................................................................................24180.06101000000000
...........................................................................................................TCGTCTGATTGTGTTGTTC--------GAT-----------TATT.............................................................................................................................................................................................................................................................................26180.06101000000000
........................................................................................................TATTCGTCTGATTGTGTTGTTC--------GAT-----------T................................................................................................................................................................................................................................................................................26180.06100100000000
.......................................................................................................................................................TATACCCGT--------------TACTCG----TA--G-----AGT-A..............................................................................................................................................................................................................................22200.05100100000000
...............................................................................................................................................................................................................................................................................................................................TGACCATGTCCGTCTGTCTGTCC...............................................................................23200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................TATGAACGCTGTGATCTCAGGAACTACA..............................................28200.05101000000000
......................................................................................................ATTATTCGTCTGATTGTGTTGTTC--------GA.............................................................................................................................................................................................................................................................................................26200.05101000000000
...................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCTGTCCGT.............................................................................21200.05101000000000
..................................................................................................................................................................................................................................................................................................CTTGATCAGGACCAATAGCCGAG............................................................................................................23200.05101000000000
............................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGACCA.....................................................................................................................20200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTACAAAA----------------------GCTAGAA..............22200.05100000010000
.............................................................................................................................................................................................................................................................................................................................TATGACCATGTCCGTCTGTCTGTCCGT.............................................................................27200.05100100000000
..................................................................................................................................................................................................................................................CAGGCAGAATGAAGCGTT.................................................................................................................................................................18200.05100000000001
................................................................................................................................................................................................................................................AACAGGCAGAATGAAGCGT..................................................................................................................................................................19200.05100000010000
......................................................................................................................................................................................................AAAAGG--GTATACTAGATTCGTTG-A....................................................................................................................................................................................................24200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................CCGTATGAACGCTGTGATCTC........................................................21200.05101000000000
.............................................................................................................................................................................................................................TG-AAA------AGTATGTAACAGGC..............................................................................................................................................................................19200.05101000000000
........................................................................................................................................................................................................AAGG--GTATACTAGATTCGT........................................................................................................................................................................................................19200.05100010000000
.............................................................................................................................................................................................................................................................................................................................TATGACCATGTCCGTCTGTCTGTCC...............................................................................25200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................TATGAACGCTGTGATCTCAGGAACC.................................................25200.05100100000000
................................................................................................................................................................................CTCG----TA--G-----AGT-AAAAGG--GTA....................................................................................................................................................................................................................19200.05100010000000
...................................................................................................................................................................................................................................................................................................................................................................................TACAAAA----------------------GCTAGAAAGTT-GAGA-TTAA26200.05100100000000
droEug1
TTTA--CAATTCGTACACAT---GGTAAAGATTAGTTTT------AA--TCTTTTAGAAATATATAATGTTAAAAA--------TATTTTTACATAATA-----------------------------------TTTAACTTC----TGTTTATACTCCT--------------TACTCG----TA--G-----AGG-AAGAGG--GTACATTAGATTCGTTG-AAA------AGTATGTAACAGGTAGTAGGAAGCGCTTCCGACCCTATAAAGTATA-----TATATTCTGGATCAGGATGAATAGCGAGGACGATTGAGCCATGTC----------------CGTATGAACGCTGAGATCTCCGAAACTATAAGA----------------------GATAAAAAGTT-GAGA-TTAASizeHit CountTotal NormTotal
No Reads
droBia1
TTCA---------AAAATTGTAACT-----ATTTTTTTAGT--TTATCA----CAGCA----TAC--A-CTTACAA------A-T--------TTTGTA-----------------------------------TTT-----------TATTATACCCGT--------------TACTCG----TA--A-----AGT-AAA------------ATATTCGTCA-GAA------AGTATGTAACAGGTAAAAGGAAGTGTTTCCGACACCAAAAAGTATA-----TATTTTCTTAATCAGGATCACTAGCCGATTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTATGAACGCTGAGATCTCGGAAACCATAAAA----------------------GCTAGAATATT-----CTTACSizeHit CountTotal NormTotal
No Reads
droTak1
GGTT--CAATTCC-----CGCTAAC-----AACACTGTTTTTTTTGTAA----TTAGTAA-------A-CTAACAA------CTTAA-CTTTTTTAATA-----------------------------------CGT-----------TTTTATACCCGT--------------TACTCG----TA--G-----AGT-AAAAGG--GTATATTAGATTCGTGC-AAA------AGTATGTAACAGCTAA----AAGCGTTTCCGACCCCATAAAGTATA-----TATATTCTTGATCAGGGGCACTAGCCGAGTCGATCTAGCCATGTCCGT----CTGTCCGTCTGTATGAACGCTGAGATCTCAGAAACTACAAAA----------------------GCTAGAAGGTT-GAGATTTCCSizeHit CountTotal NormTotal
No Reads
droEle1
TAAA--TGGTTCTTGTTTCAAAAAT-----G--TTCTTACTTAATTGTG----TTAGAATGATATGCA-CGAAATT--------TATTTATCAT----------------------------TTTCGATGCAAAGCT-----------TTTTATACCCGT--------------TACTCG----TA--G-----ATT-AAAAGG--GTATATTATATTCGTTG-AAA------AGCAT----------GAAGAAAGCGTTTCCGACCCTAAAA--------------ATTCTTTATCAGCATCAATAGACAAGTCGATCTAGAGATGTCCGTCTGGCTGTCAGTGCGAATGAACTTCGAGATCTCGAGATCTT--------------CTTGTTTTCAAACAGT----GTTCT-AAATG-TASizeHit CountTotal NormTotal
No Reads
droRho1
TTTG--CGATTGA-ACAGGATGAAT-----ATTTTTGTTTTCATTGTA-----TTTTAAATATATGGATTTAAAAA--------TATGT---------------------------------------------GGT-----------ATTTATACCCGT--------------TACTCG----TA--G-----AGT-AAAAGG--GTATATTGTATTCGTGC-AAA------AGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA-----TATATTCTTGTTCAGGATCAGTC------------------------------TGTCTGTCCGTATGAACGCTGAGATTTCGAAAACTATAAAA----------------------GCTAGAAGATT-GGCATTTTGSizeHit CountTotal NormTotal
No Reads
droFic1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------AGTATGTAACAGGTTGAAGAAAGCACTTGCGACCCCAGAAAGTATATAGTATATAATCCTGATCAGGATCATCAGACGAGTCGACTTATAAGTATAAGT-------------------------------------TG---------------CCACACCTTTTGGCAAC----GTTTAACTAAGTAASizeHit CountTotal NormTotal
No Reads
droKik1
TATA--AAATTAAAAAATATTACAT-----ATGTCCTCGGACTTAA----------------ATC--A-CTCAAGT------A-T---TTTACATGAA-----------AACCGTTGGCCCTGATCAACCACCAATT-----------TATTATACCCTT---------------------------------------GCAGG--GTATTATAATTTCAGTC-AGA------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA-----TATATTCTTGATCAGCATCAACAGCCGAGTCGATCT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TATA--CGATACATATATAT----------ATAATAATATATGCTGCTA----CTGGAAAGGTA------TAGAAA--------CGTTT--CATTC--T-----------------------------------TGT-----------TTTTATACCCTT------------------------------------G-CAGAGG--GTATTATAATTTTGGTC-AAA------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA-----TATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCAT-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................TTTGGTC-AAA------AGTGTGCAACGCAGTGA...........................................................................................................................................................................27200.306600000
.......................................................................................................................................................................................................................TTTTGGTC-AAA------AGTGTGCAACGCA...............................................................................................................................................................................24200.204400000
........................................................................................................................................................................................................GAGG--GTATTATAATTTTGGTC-AAA------A...........................................................................................................................................................................................25200.153030000
droBip1
CT-A--CAAATAAAATAAA---AA--------TACTGCGCGCGCCATGT----CAAGTGAGCCACG---TTAAAAA--------ATTTATTTTTTGATAT----------------------TTA---------CGT----TTTAAATTTTTATACCCTT------------------------------------G-CAGAGG--GTATTATAAGTTTGTCC-AAA------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA-----TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCAT-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCTTACCAATTCCACTATT--AACG-----TTTATCTGGCACACTGG------TCTGAGAGTTATGGACCGTAAAA------A-TGATT------TCTT-----------------------------------TTT-----------TTTTATACCCGA--------------TATCCA----AAATG-----AGT-AAAGGG--TTATATTAGATTTGTGGTAAAAGTGGATATGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA-----TATATTCTTGATCAGCATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATATGTG......................................................................................................................................................................................2353.40170300001670
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATA..........................................................................................................................................................................................1982.251801610000100
.......................................................TGAGAGTTATGGACCGTAAAA------...................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATATGT.......................................................................................................................................................................................2250.6030300000000
..................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCC...............................................................................................................20200.501001000000000
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATAA.........................................................................................................................................................................................2090.4440400000000
........................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCC.........................................................................................................................................................20200.4080062000000
.....................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGTCG.........................................................................................................23200.3570700000000
..................................................................................................................................................................................................................................................................................GTATA-----TATATTCTTGATCAGC.........................................................................................................................21200.3570700000000
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATATGTC......................................................................................................................................................................................2360.3320000000020
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATATG........................................................................................................................................................................................2150.2010000000010
.......................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCG.........................................................................................................21200.2040000040000
...................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGAT...........................................................................................................................................................................................23200.2040000000400
..................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTG..............................................................................................................................................................................................21200.1530000000003
..................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTGGA............................................................................................................................................................................................23200.1530000000300
....................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCC........................................................................................................................................................25200.1530001000020
..........................................................................................................................................................................................................................................ATGTGTAACGTCCAGAAGGAATC....................................................................................................................................................................2370.1410100000000
.......................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATA..........................................................................................................................................................................................2080.1310100000000
....................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGG.............................................................................................................................................................................................20200.1020000002000
..................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTGG.............................................................................................................................................................................................22200.1020200000000
........................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAT...........................................................................................................................................................................................18200.1020020000000
...................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGA........................................................................................................26200.1020000002000
..............................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAAT...................................................................................................................20200.1020000000200
..........................................................................................................................................................................................................................TGTGGTAAAAGTGGATAA.........................................................................................................................................................................................18100.1010100000000
.................................................................................................................................................................................................................................................................GTTTCCGACCCCATAAAGTAT...............................................................................................................................................21200.1020200000000
.....................................................................................................................................................................................................................................TGGATATGTGTAACGTCCAGA...........................................................................................................................................................................21110.0910100000000
...............................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTT.................................................................................................................................................................21200.0510000000010
...............................................................................................................................................................................................................TATATTAGATTTGTGGTAAAA.................................................................................................................................................................................................21200.0510000000100
.................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGA.............................................................................................................23200.0510000000010
.................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAG................................................................................................................................................................................................20200.0510000001000
..........................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCATAA....................................................................................................................................................23200.0510000000100
.......................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGAT...........................................................................................................................................................................................19200.0510000010000
...........................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------19200.0510100000000
............................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCG..............................................................................................................27200.0510000000010
droPer2
TATA--TAAATTACATAT--TAAAT-----ATCACTTT-------A-------TTACAAA--------------ATTGTTAACACAC--ATTATTTAC------------------------------------GCT-----------TTTTATACCCGA--------------TACTCA----AAATG-----AGT-ATTGGG--GTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA-----TATATTCTTGATCAGCATCAATAGCCGAGTCGAT-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................ACGTCCAGAAGGAATCGTTTCCGA............................................................................................................................................................24200.051000001
droWil2
AT-G--CGA-----ATCCCGAAAAC-----ATTATTTTTCGCGCATTCA----TAAAAAGGAAATGCA-TTA-----------------TGTAGTATGA-----------------------------------CAT-----------TTTTATACCATA--------------CACCCA----TA--G-----GGT-GAAATG--GTATATTAAAGTCGCCA-AAA------TGTATGTAACAGGCAGAAGGAAGCTTCTCCAACCCCATTAAGTATA-----TATATTCTTGATCAGGATCAACAGCCGATGCGATCTAGTTTTGTCCGT----CCGTCTGTCCGTAGGAACACCTAGATCTCGGAGACTATAAGA---------------------CGCCATGGTATG-----TAGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................TAAAAAGGAAATGCA-TTA-----------------TGTAGTA.....................................................................................................................................................................................................................................................................................................................................2518.00805030
...................................................................................................................................................................................................................................................................................................................................................................................TATAAGA---------------------CGCCATGGTATG-----TAGAC2416.00603030
.......................................................................................................................................................................................................................................................................................................TCAGGATCAACAGCCGATGCGATC......................................................................................................2415.00500050
..............................................................................................................................................................................................................................................................................................................CAACAGCCGATGCGATCTAGTTTTG..............................................................................................2515.00501040
.T-G--CGA-----ATCCCGAAAAC-----ATTATTTTTCG............................................................................................................................................................................................................................................................................................................................................................................................2764.8329023060
................................................................TGCA-TTA-----------------TGTAGTATGA-----------------------------------CAT-----------TTTTA............................................................................................................................................................................................................................................................................2514.00401030
.............................................................................................................................................................................................................................................................................................................TCAACAGCCGATGCGATCTAGTTTTG..............................................................................................2614.00402020
......................................................................TA-----------------TGTAGTATGA-----------------------------------CAT-----------TTTTATACCA.......................................................................................................................................................................................................................................................................2514.00404000
.T-G--CGA-----ATCCCGAAAAC-----ATTATTTT...............................................................................................................................................................................................................................................................................................................................................................................................2463.3320011090
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCGT.................................................................................2413.00303000
.................................................................................................................................................................................................................................................................................................................................................................................ACTATAAGA---------------------CGCCATGGTATG-----TAGAC2613.00302010
...................................................................................................................................................................................................................................................................................................................................................................................TATAAGA---------------------CGCCATGGTATG-----TAGA.2313.00301020
..................................................................................................................................................................................................................................................................................................................................TTTTGTCCGT----CCGTCTGTCCGTAGGA.....................................................................2613.00301020
.....................................................................................................................................................................................................................................................................................................................................TGTCCGT----CCGTCTGTCCGTAGGAACACC................................................................2813.00302010
..................................................................................................................................................................................................................................................................................................................................................................ACCTAGATCTCGGAGACTATAAGA---------------------CGCC..................2812.00200020
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAACAGCCGATGCGATC......................................................................................................2712.00202000
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAACAGCCGATGCG.........................................................................................................2412.00202000
.................................................................................................................................................................................................................................................................................................................CAGCCGATGCGATCTAGTTTTGTCCGT----.....................................................................................2712.00201010
..................................................................................................................................................................................................................................................................................................................AGCCGATGCGATCTAGTTTTGTCCGT----.....................................................................................2612.00200020
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCGTCG...............................................................................2612.00202000
.............................................................................................................................................................................................................................................................................................................................TCTAGTTTTGTCCGT----CCGTCTG..............................................................................2212.00201010
..............................................TCA----TAAAAAGGAAATGCA-TTA-----------------TGTAGTA.....................................................................................................................................................................................................................................................................................................................................2812.00202000
.....................................................................................................................................................................................................................................................................................................................................................................TAGATCTCGGAGACTATAAGA---------------------CGCCA.................2612.00201010
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCGTCTG..............................................................................2712.00202000
..............................................TCA----TAAAAAGGAAATGCA-TTA-----------------TGTAGT......................................................................................................................................................................................................................................................................................................................................2712.00201010
...............................................................................................................................................................................................................................................................................................................................TAGTTTTGTCCGT----CCGTCTG..............................................................................2012.00201010
.................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAGCCGATG...........................................................................................................2512.00202000
.T-G--CGA-----ATCCCGAAAAC-----ATTATTTTT..............................................................................................................................................................................................................................................................................................................................................................................................2561.671005050
...............................................................................................................................................................................................................................................................................................................................TAGTTTTGTCCGT----CCGTCTGTCCG..........................................................................2411.00101000
...............................................................................................................................................................................................................................................................................................................................TAGTTTTGTCCGT----CCGTCTGTCCGTAG.......................................................................2711.00100010
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCGTCTGT.............................................................................2811.00101000
...............................................................................................................................................................................................................................................................................................................................TAGTTTTGTCCGT----CCGTCTGTCCGT.........................................................................2511.00101000
............................................................................................................................................................................................................................................................................................................................................................................CGGAGACTATAAGA---------------------CGCCATGGTATG-----.....2611.00101000
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCAGA................................................................................2511.00101000
.............................................................................................................................................................................................................................................................................................................................TCTAGTTTTGTCCGT----CCGTCTGT.............................................................................2311.00101000
................................TATTTTTCGCGCATTCA----TAAAAAGGAAA.....................................................................................................................................................................................................................................................................................................................................................................2821.00202000
.............................................................................................................................................................................................................................................................................................................TCAACAGCCGATGCGATCTAG...................................................................................................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................CACCTAGATCTCGGAGACTATAAGA---------------------CG....................2711.00101000
..............................................TCA----TAAAAAGGAAATGCA-TTA-----------------TGTA........................................................................................................................................................................................................................................................................................................................................2511.00101000
............................................................................................................................................................................................................................................................................................................................................................AGGAACACCTAGATCTCGGAGACTA................................................2521.00201010
...................................................................................................................................................................................................................................................................................................................................TTTGTCCGT----CCGTCTGTCCGTAGGAA....................................................................2611.00110000
....................................................................................................................................................................................................................................................................................................................................................................................ATAAGA---------------------CGCCATGGTATG-----TAGAC2311.00101000
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAACAGCCGATGCGAT.......................................................................................................2611.00100010
.....................................................................................................................................................................................................................................................................................................................................TGTCCGT----CCGTCTGTCCGTAGGA.....................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCGTC................................................................................2511.00101000
......................................................................................................................................................................................................................................................................................................................GATGCGATCTAGTTTTGTCCGT----CCGT.................................................................................2611.00101000
.................................................................................................................................................................................................................................................................................................................................................................................ACTATAAGA---------------------CGCCATGGTATG-----T....2211.00100010
..................................................................................................................................................................................................................................................................................................................................................................................CTATAAGA---------------------CGCCATGGTATG-----TA...2211.00100010
.......................................................................................................................................................................................................................................................................................................TCAGGATCAACAGCCGATGCGATCTT....................................................................................................2611.00100010
....................................................................................................................................................................................................................................................................................................TGATCAGGATCAACAGCCGATGCGA........................................................................................................2511.00100010
..................................................................................................................................................................................................................................................................................................................................TTTTGTCCGT----CCGTCTGTCCGTAGG......................................................................2511.00101000
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCGTCT...............................................................................2611.00101000
..........................................................................................................................................................................................................................................................................................................................................................................CTCGGAGACTATAAGA---------------------CGCCATGG..............2411.00101000
...............................................CA----TAAAAAGGAAATGCA-TTA-----------------TGTAGTA.....................................................................................................................................................................................................................................................................................................................................2711.00101000
..............................................................................................................................................................................................................................................................................................................................CTAGTTTTGTCCGT----CCGTCTGT.............................................................................2211.00101000
......................................................................................................................................................................................................................................................................................................ATCAGGATCAACAGCCGATGCGATCTAG...................................................................................................2811.00100010
..................................................................................................................................................................................................................................................................................................................................TTTTGTCCGT----CCGTCTGTCCGTAG.......................................................................2411.00100010
.............................................TTCA----TAAAAAGGAAATGCA-TTA-----------------TGTAG.......................................................................................................................................................................................................................................................................................................................................2711.00101000
.............................................................................................................................................................................................................................................................................................................................................................................GGAGACTATAAGA---------------------CGCCATGGTATG-----.....2511.00101000
.....................................................................................................................................................................................................................................................................................................................CGATGCGATCTAGTTTTGTC............................................................................................2011.00101000
.................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAGCCGATGC..........................................................................................................2611.00101000
................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAACAGCCGATG...........................................................................................................2611.00101000
.................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAGCCGATGCGA........................................................................................................2811.00100010
...........................................................................................................................................................................................................................................................................................................................................................................TCGGAGACTATAAGA---------------------CGCCATGGTATG-----.....2711.00101000
........................................................AAAGGAAATGCA-TTA-----------------TGTAGTATGA-----------------------------------C..............................................................................................................................................................................................................................................................................................2611.00100010
...........................................................................................................................................................................................................................................................................................................................................................................TCGGAGACTATAAGA---------------------CGCCATGGTAT...........2611.00101000
.......................................................................................................................................................................................................................................................................................................TCAGGATCAACAGCCGATGCGATA......................................................................................................2411.00100010
.....................................................TAAAAAGGAAATGCA-TTA-----------------TGTAGTATG...................................................................................................................................................................................................................................................................................................................................2711.00101000
.......................................................................................................................................................................................................................................................................................................TCAGGATCAACAGCCGATGCGATCT.....................................................................................................2511.00101000
.......................................................................................................................................................................................................................................................................................................TCAGGATCAACAGCCGATGCGATCTAGT..................................................................................................2811.00101000
.....................................................................................................................................................................................................................................................................................................................................................TGTCCGTAGGAACACCTAGATCTCGGA.....................................................2721.00202000
..............................................................................................................................................................................................................................................................................................................................CTAGTTTTGTCCGT----CCGTC................................................................................1911.00100010
..............................................................................................TATGA-----------------------------------CAT-----------TTTTATACCATA--------------CACCCA----.............................................................................................................................................................................................................................................2621.00201010
.................................................................................................................................................................................................................................................................................................................................................................CACCTAGATCTCGGAGACTATAAGA---------------------CGCC..................2911.00110000
.....................................................................................................................................................................................................................................................................................................GATCAGGATCAACAGCCGATGCGATC......................................................................................................2611.00101000
.....................................................................................................................................................................................................................................................................................................................................................................TAGATCTCGGAGACTATAAGA---------------------CGCC..................2511.00101000
.................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAGCCGATGCG.........................................................................................................2711.00101000
......................................................AAAAAGGAAATGCA-TTA-----------------TGTAGTA.....................................................................................................................................................................................................................................................................................................................................2411.00101000
......................................................AAAAAGGAAATGCA-TTA-----------------TGTAGTATGA-----------------------------------...............................................................................................................................................................................................................................................................................................2711.00101000
.........................................................................................................................................................................................................................................................................................................................................................................TCTCGGAGACTATAAGA---------------------CGCCATGGTA............2711.00101000
............................................................GAAATGCA-TTA-----------------TGTAGTATGA-----------------------------------CAT-----------.................................................................................................................................................................................................................................................................................2411.00101000
........................................................................................................................................................................................................................................................................................................................TGCGATCTAGTTTTGTCCGT----CCG..................................................................................2311.00101000
......................................................AAAAAGGAAATGCA-TTA-----------------TGTAGTATGA-----------------------------------C..............................................................................................................................................................................................................................................................................................2811.00101000
..........................................................................................................................................................................................................................................................................................................................CGATCTAGTTTTGTCCGT----CCGT.................................................................................2211.00101000
.........................................................................................................................................................................................................................................................................................................................................................................TCTCGGAGACTATAAGA---------------------CGCCATGG..............2511.00101000
................................................................................................................................................................................................................................................................................................................................................................................GACTATAAGA---------------------CGCCATGGTATG-----TAG..2511.00101000
..............................................................................................................................................................................................................................................................................................................CAACAGCCGATGCGATCTAGTTTT...............................................................................................2411.00101000
.....................................................TAAAAAGGAAATGCA-TTA-----------------TGTAGT......................................................................................................................................................................................................................................................................................................................................2411.00101000
..............................................................................................................................................................................................................................................................AGCTTCTCCAACCCCATTAAG..................................................................................................................................................2111.00101000
......................AAC-----ATTATTTTTCGCGCATTCA----TAAAAG..........................................................................................................................................................................................................................................................................................................................................................................2840.75301020
................................................................................................TGA-----------------------------------CAT-----------TTTTATACCATA--------------CACCCA----.............................................................................................................................................................................................................................................2440.75312000
.....................AAAC-----ATTATTTTTCGCGCATTCA----TA..............................................................................................................................................................................................................................................................................................................................................................................2540.75303000
......................AAC-----ATTATTTTTCGCGCATTCA----TAAAAA..........................................................................................................................................................................................................................................................................................................................................................................2840.50202000
...............................TTATTTTTCGCGCATTCA----TAAAAAGGAAA.....................................................................................................................................................................................................................................................................................................................................................................2920.50101000
.....................................................................................................................................................................................................................................................................................................................................................TGTCCGTAGGAACACCTAGATCTCGGAG....................................................2820.50101000
...........................................................................................................................................................................................................................................................................................................................................T----CCGTCTGTCCGTAGGAACACCTAGA............................................................2620.50100010
...........................................................................................................................................................................................................................................................................................................................................T----CCGTCTGTCCGTAGGAACACCTAGATCT.........................................................2920.50101000
.....................................................................................................................................................................................................................................................................................................................................TGTCCGT----CCGTCTGTCCGTAGGAATT..................................................................2620.50100010
.............................................................................................................................................................................................................................................................................................................................................................GGAACACCTAGATCTCGGAGACTAT...............................................2520.50100010
...................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTAGGAACACCTAG.............................................................2120.50101000
...............TCCCGAAAAC-----ATTATTTTTCGCGCAT.......................................................................................................................................................................................................................................................................................................................................................................................2660.50302010
.....................................................................................................................................................................................................................................................................................................................................................TGTCCGTAGGAACACCTAGATCTCG.......................................................2520.50101000
................................TATTTTTCGCGCATTCA----TAAAAAGGAA......................................................................................................................................................................................................................................................................................................................................................................2720.50101000
......................................................................................................................................................................................................................................................................................................................................................GTCCGTAGGAACACCTAGATCTCGGAGA...................................................2820.50101000
.........................................................................................................................................................................................................................................................................................................................................................CGTAGGAACACCTAGATCTCGGAGAC..................................................2620.50100010
.....................................TTCGCGCATTCA----TAAAAAGGAAATG...................................................................................................................................................................................................................................................................................................................................................................2520.50100010
.....................................................................................................................................................................................................................................................................................................................................................TGTCCGTAGGAACACCTAGATCTCGG......................................................2620.50101000
.................................................................................................................................................................................................................................................................................................................................................CGTCTGTCCGTAGGAACACCTAGATCT.........................................................2720.50101000
.............................................................................................................................................................................................................................................................................................................................................................GGAACACCTAGATCTCGGAGACT.................................................2330.33100010
........................C-----ATTATTTTTCGCGCATTCA----TAAAAG..........................................................................................................................................................................................................................................................................................................................................................................2640.25101000
........................C-----ATTATTTTTCGCGCATTCA----TAAAAA..........................................................................................................................................................................................................................................................................................................................................................................2640.25101000
.....................AAAC-----ATTATTTTTCGCGCATTCA----................................................................................................................................................................................................................................................................................................................................................................................2340.25100010
.....................AAAC-----ATTATTTTTCGCGCATTCA----TAAAA...........................................................................................................................................................................................................................................................................................................................................................................2840.25101000
................................................................................................TGA-----------------------------------CAT-----------TTTTATACCATA--------------CACCCA----TA--.........................................................................................................................................................................................................................................2640.25101000
.....................AAAC-----ATTATTTTTCGCGCATTCA----T...............................................................................................................................................................................................................................................................................................................................................................................2440.25101000
.....................AAAC-----ATTATTTTTCGCGCATTCA----TAAAAA..........................................................................................................................................................................................................................................................................................................................................................................2940.25101000
......................AAC-----ATTATTTTTCGCGCATTCA----TAAA............................................................................................................................................................................................................................................................................................................................................................................2640.25101000
................................................................................................TGA-----------------------------------CAT-----------TTTTATACCATA--------------CACCCA----TA--G-----GG.................................................................................................................................................................................................................................2940.25101000
...G--CGA-----ATCCCGAAAAC-----ATTATTTTTCG............................................................................................................................................................................................................................................................................................................................................................................................2660.17101000
...G--CGA-----ATCCCGAAAAC-----ATTATTTT...............................................................................................................................................................................................................................................................................................................................................................................................2360.17101000
AT-G--CGA-----ATCCCGAAAAC-----ATTATT.................................................................................................................................................................................................................................................................................................................................................................................................2360.17101000
AT-G--CGA-----ATCCCGAAAAC-----ATTATTTT...............................................................................................................................................................................................................................................................................................................................................................................................2560.17101000
................CCCGAAAAC-----ATTATTTTTCGCGCATT......................................................................................................................................................................................................................................................................................................................................................................................2660.17101000
.T-G--CGA-----ATCCCGAAAAC-----ATTATTTTTC.............................................................................................................................................................................................................................................................................................................................................................................................2660.17101000
..............ATCCCGAAAAC-----ATTATTTTTCGCGCAT.......................................................................................................................................................................................................................................................................................................................................................................................2760.17101000
.....................................................................................................................................................................................................................................................GCAGAAGGAAGCTTCTCCAACCCCA.......................................................................................................................................................2590.11101000
...................................................................................................................................................................................A----TA--G-----GGT-GAAATG--GTATATTAAAG............................................................................................................................................................................................................24200.10202000
.....................................................................................................................................................................................................................................................GCAGAAGGAAGCTTCTCCAACCCCAA......................................................................................................................................................26100.10100010
....................................................................................................................................................................................................................TAAAGTCGCCA-AAA------TGTATGTAACAG................................................................................................................................................................................26200.10202000
...............................................................................................................................................................................................................................................................................TAAGTATA-----TATATTCTTGATCAGGAT.......................................................................................................................26110.09101000
...............................................................................................................................................................................................................................................................................TAAGTATA-----TATATTCTTGATCAGGA........................................................................................................................25120.08101000
...............................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCTTCTCC..............................................................................................................................................................24200.05101000
............................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAACA..................................................................................................................23200.05101000
............................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCTT..................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAACAGCCGA.............................................................................................................28200.05101000
.............................................................................................................................................................................................................................CA-AAA------TGTATGTAACAGGCAGAAGGAAG.....................................................................................................................................................................28200.05101000
.................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCTTCT................................................................................................................................................................20200.05100010
................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAACAGCCGA.............................................................................................................24200.05101000
...............................................................................................................................................................................................................................................................................TAAGTATA-----TATATTCTTGATCAGGT........................................................................................................................25200.05100010
..............................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCTT..................................................................................................................................................................21200.05100010
....................................................................................................................................................................................................T-GAAATG--GTATATTAAAGTCGCCA-.....................................................................................................................................................................................................24200.05100010
droVir3
TTC---------GAATACATTAATT-----ATTATTATGGTCGTC---------------------------------------------------------------------------------------------------------TTGAACCCAT--------------TAA-------AAATG-----GGT-ATAAGGCTATATATTGTATTTGTGCAAAATCCAAATGTATGCAACAGGCAGGAGGAAGCATCTCCGACCCCATAAAGAATA-----TATATTCTTGATCAGCATTGATAGCCGAGTCGATCTAACCAT-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................TCAGCATTGATAGCCGAGTCG.........................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................TCCAAATGTATGCAACAGGCAG............................................................................................................................................................................22140.294001000000000000000000000001011000000000000000000000000000000000
...............................................................................................................................................................T--------------TAA-------AAATG-----GGT-ATAAGGCTATAT...................................................................................................................................................................................................................24120.172000000000000000000000000001000000000010000000000000000000000000
........................................................................................................................................................................................................................................................GGAGGAAGCATCTCCGACCCC........................................................................................................................................................21120.172000000000000000000000000000000000000000000000000000000000000002
...............................................................................................................................................................T--------------TAA-------AAATG-----GGT-ATAAGG.........................................................................................................................................................................................................................18200.153000000003000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AACAGGCAGGAGGAAGCATCTCCG.............................................................................................................................................................24130.081000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TATTTGTGCAAAATCCAAATGTATGCA....................................................................................................................................................................................27140.071000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCTCCGACCCCATAAAGAATA-----TA.......................................................................................................................................23150.071000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................CAAAATCCAAATGTATGCAACAGG...............................................................................................................................................................................24150.071000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAACCA................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................TA-----TATATTCTTGATCAGCATT......................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
CC-A--CGGTTCGAAAAATTCAGGG-----TATCTCTTAGTCGATAAGA-----------GGAGCAC-------TT--------TGTTTTTTATTTATT-----------------------------------ACT-----------TGTTATACCCTG--------------AACCCATTGAAAATG-----GGAAATCAGG--GTATAATGGTTTTGTG--AAA------AGTATGTAACGGGCAGAAGGAGGCGTGGCAGAACCCATAAAGTATA-----TATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTG----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................CTTGATCAGGGCGACGAGCTG..............................................................................................................21200.357700000
.............................................................................................TTTATT-----------------------------------ACT-----------TGTTATACCCTG--------------.......................................................................................................................................................................................................................................................2130.331100000
........................................................................................................................................................................................................................................................................AACCCATAAAGTATA-----TATATTCTTGATC............................................................................................................................28100.303100020
........................................................................................................................................................................................................................................................................AACCCATAAAGTATA-----TATATTCT.................................................................................................................................23110.091000010
.........................................................................................................................................................................................................................................................................ACCCATAAAGTATA-----TATATTCT.................................................................................................................................22150.071100000
............................................................................................................................................................................................................................TG--AAA------AGTATGTAACGGGCAGAAGG........................................................................................................................................................................25170.061000010
...................................................................................................................................................................................................................ATGGTTTTGTG--AAA------AGTATGTAACGG................................................................................................................................................................................26180.061100000
...........................................................................................................................................................................................................................................TATGTAACGGGCAGAAGGAGG.....................................................................................................................................................................21200.051000001
......................................................................................................................................................................................GAAAATG-----GGAAATCAGG--GTATAATGG..............................................................................................................................................................................................................26200.051100000
...................................................................................................................................................................................................................ATGGTTTTGTG--AAA------AGTAT.......................................................................................................................................................................................19200.051100000
droGri2
AA------------ATACCACAAAT-----TTTGTTTGA--GTTTGA--GTT-------------------TGAG------------------------------------------------------------------------TATTCATTGCCTTTTATTAATATCAATCAGCCA----GGAAGAATTTA-T-CAAAAT--GTATAATTGTTTTCTTT-AAA------AGTATGCAACAGGCAGGAAGAAGCTTCTTCGAACCCATAAATAATA-----TTTATTCTTAATCAGGATCAACAGGCGAGTCGATATAACCATTG---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:45 PM