dse_1260

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATAAAGTCAATTTATACCCCACACTAATACACACCCACACACACACCACACACACACTCGCCAACTCACTAACCTAAACCTTTAAAAGGATAAATCAAGACTGAAGTAAAGAAAAGCGCAAATCAAGAGAAAAAACATATAACTATAGCATATGTCTTATGTGTATGTGGCTGGATTGTACTAGATTAAGTTGGC ************************************************((((......((((.((((((.((.....................................................................))))))))...)))).............))))..........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	M054 female body	V113 male body
..................................AATTAGTGAACTCAAGGTTG.....................................................................................................................................................................................................	20	2	1	1.00	1	0	1	0
...AAGCGTCCGCCACGTGACCCCTTCAAC.............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0
ATGAAGCGTCCGCCACGTGACCCCTT.................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0
.......GTCCGCCACGTGACCCCTTC................................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0
....................................................................................................................................................................AAGAAAAGCGCAAATCAAGAGA.................................................................	22	0	1	1.00	1	1	0	0
...........................AATGATAAATTAGTGAACTCAAGGTT......................................................................................................................................................................................................	26	2	1	1.00	1	1	0	0
........................................................................................................................................................AAGACTGAAGTGGGGAAAAG...............................................................................	20	3	20	0.10	2	0	1	1
....................................................................................................................................................................................GAGAGAAAAGACATATCACT...................................................	20	3	11	0.09	1	0	0	1
........................................................................................................................................................................AAAGCGCTATTCAAGAGGA................................................................	19	3	20	0.05	1	0	1	0

TACTTCGCAGGCGGTGCACTGGGGAAGTTGCTATTTAATCACTTGAGTTCCACGGTTATTTCAGTTAAATATGGGGTGTGATTATGTGTGGGTGTGTGTGTGGTGTGTGTGTGAGCGGTTGAGTGATTGGATTTGGAAATTTTCCTATTTAGTTCTGACTTCATTTCTTTTCGCGTTTAGTTCTCTTTTTTGTATATTGATATCGTATACAGAATACACATACACCGACCTAACATGATCTAATTCAACCG ************************************************((((......((((.((((((.((.....................................................................))))))))...)))).............))))..........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	V113 male body	M054 female body
.....................................................................................GTGTGGGTGTGGGTGTGGTGTGGGTG............................................................................................................................................	26	2	1	1.00	1	1	0	0
..............................................................................................TGTGTGTGGTGTGAGTGTGAG........................................................................................................................................	21	1	5	0.20	1	0	1	0
........AGGCCGTGCCCTGGGGTAG................................................................................................................................................................................................................................	19	3	7	0.14	1	0	0	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_38:332820-333070 -	dse_1260	ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATAAAGTCAATTTATACC---CCACACTAA-TA--------CAC-----------------------A-------------------------CCCACACACA-C--A--C---CA-------------CAC--------------ACACACTC--GCCAACTCA------------CTAACCTAAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----AACATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGATTAAGT----TGGC------------------------
droSim2	3r:4510763-4511015 -	dsi_27463	ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CAC-----------------------A-------------------------CCCACACAC-ACACA--C---CA-------------CAC--------------ACACACTC--GCCAACTCA------------CTAACCTCAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----AACATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------
dm3	chr3R:16792875-16793129 +		ATGAAGCGTCCACCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-AA--------CAC-----------------------A-------------------------CCCACACAC-ACACA--C---CACACAC-------------------------ACCCACTC--GCCAACTCA------------CTAACCTCAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--CAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-TTAGAATAAGT----TGGC------------------------
droEre2	scaffold_4770:4863771-4864039 -		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TACAACC----AC----AC-----------------ACATCAC------------------------ACACA-------CACACA-------------CACAC--ATATAT--ATACACACTC--ACCAACTCA------------CTAACCTCAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-ATAAAATAAGT----TGGC------------------------
droYak3	3R:5583816-5584051 +		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CACAC---------------------------------------------------------------------ACACACA-----------------------------CTC--ACCAACTCA------------CTAACCTTAACCT----TTAAA-AG----------------GAT--------------A---------------------------AGT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-ATAAAATAAGT----TGGC------------------------
droEug1	scf7180000409542:354375-354641 -		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CACAC-----------------------------------------------------------ACA--C---CACACACA-----------------------------CTC--ACCATCCCA------------CTAATCTCAACTA----CTAAA-AA----------------GAA--------------AAACCCCACCAAAAAAAAAAGAAAAGAAAAT-C--AAGTCTGAC-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAA--A----ACCATATAAATATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------
droBia1	scf7180000302155:139353-139600 +		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-T------------------------------TACACA-------------------------CATAC-CAC-ACACA--C---CACACACA-----------------------------CTC--ACCAACCCA------------CTAATCTCAACCA----CTAAA-AA----------------GAA--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------C-AGAGAA--A----ACCATATAA-TATAACAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------
droTak1	scf7180000415750:471194-471445 -		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CACAC------------------------------------------------ACACACAC--CACA--C---CACACACA-----------------------------CTC--ACCAGCCCA------------CTAATCTCAACCA----CTAAA-AA----------------AAT--------------TA---------------------AA---AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAA--A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGA----TGGC------------------------
droEle1	scf7180000491080:670983-671219 +		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CACAC-------------------------------------------------------------A--C---CGC-CACA-----------------------------CTC--A----CCCA------------CTAATCTCAACCA----CTAAA-AA----------------GAA--------------AG---------------------AA---AATAC--AAGTCTGAA-GTAA----------------------------------------AGA-AA-------AGCGTAAAT----------------------------------CAAGAGAA--A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-TTAAAATAAGT----TGGC------------------------
droRho1	scf7180000779659:381292-381533 +		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CACAC-------------------------------------------------------------A--C---CACACACA-----------------------------CTC--ACCAACCCA------------CTAATCTCAACTA----CTAAAAAA----------------GAA--------------AA---------------------AAG---AA-C--ATGTCTGAA-GTAA----------------------------------------AGA-AA-------AGCGTAAAT----------------------------------CAAAAGAA--A----ACCATATAAATATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------
droFic1	scf7180000454096:54090-54351 +		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CAC-----------------------ACGCCACACAC----------------ACACACTC--CACA--C---CAC-----------------------------ACACACTT--ACCAACCCA------------CTAATCTCAACCA----CTAAA-AT----------------GAA--------------A------------------AGAAAAG---AA-C--AAGTCTGAA-GTAA----------------------------------------AGA----------AGCGCAAAT----------------------------------CAAGAGAA--A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGATTAAGT----TGGC------------------------
droKik1	scf7180000302809:54096-54343 +		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CACAC-------------------------------------------------------------A--C---CACACACACTCACCACTC--------------ACCCAC-C--GCCAAC---------------CTAATCTCAACCA----CTAAA-GC----------------GAC--------------A---------------------------A------AAGTCTGAA-CTAA----------------------------------------AGAAAA-------AGCGCAAAG----------------------------------CAAGAGAA--A----CCCATATAAATATAACAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTAATTAGCATAAGT----TGGC------------------------
droAna3	scaffold_13340:8050130-8050399 +	dan_2969	ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------C--------------------CA---------------------------------CACACA-------C--ACA-------------CACACACACACGCCCACAC---CCCAC-CCACCACA------------CTAATCTCAACTA----CTAAA-AA------------------TTAAAAACCAA--ACA---------------------------AAT-CA-AAGTCTGAACGTAA----------------------------------------AGATAA-------AGCGCAAAT----------------------------------CGAGAGAA--A----CCCATATAAATATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTAACTAGCATAAGT----TGGC------------------------
droBip1	scf7180000396708:796927-797194 -		ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------C--------------------CA---------------------------------CACACA-TA----C--ACA-------------CACACACACATGC-CACACCCCCCCAC-CCACCACA------------CTAATCTCAACTA----CTAAA-CT------------AAA---TAAAAAACCAAAAACA---------------------------AAT-CAAAAGTCTGAA-A-----------------------------------------------------------GCAAAT----------------------------------CGAAAGAA--A----AGCATATAAATATAGCAT----ATGTCTTAATGTGT-----------ATGTGGCTGGATTGTAACTAGCATAAGT----TGGC------------------------
dp5	2:12640224-12640289 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_0:7815338-7815633 +		ATGAAGCGTCCGCCCCGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTACATA--------CACACACAC-----------------G--CC-------------TACACACACTCACCCACA--------------------------CAC--------------ACACACAC--ACAAACACACCATACTAAAAACTAATCTCCTTGA----CTAAA-A-----------------GAA--------------A------------------------------------------A-GAAA----------------------------------------AGA-AAAGACAACAGCG--AAT------------------ACTTAATAACAAACAGCAAGAGAAT-A----ACCATATAACTATAGCAT----ATGT----ATGTCTCACAAATACAACTGTGGCTGGATTGTAACTATCATAAGTCCTTTGGC------------------------
droWil2	scf2_1100000004902:6117351-6117641 +		ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCCCAC-----ACACCC----AC----AAACATACTAAAATCA---------C--------------ACACAATAACTAACA-------CACACACACAC-------------------------ACCCACCC--ACCCACACA------------CTAAC------------TTAAA-AG----------------------------------------------------------------------GTGTGCA-GTAATTTCTATAAAAGTAA-------------------------AA-------------------CCTCGAAATTACTGCACCGACTTAA--AAAAAA------CGCAAAAATGAA--ACATAACTATAACGT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTAATTAGCATAAGT----TCGC------------------------
droVir3	scaffold_12855:2282246-2282469 +		ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---TCACACA-------------CAC-----------------------A---------CACACACTCACACACA---------------------AT-------------CAC--------------ACACATGT--GCACACTTA-------------------------------------------------------------------------------------------------------------ATGAAAAATA----------------------------------------TAC-TA-------AACAAA--------------------------------------TCGCGCAG-C----ATCGTA-AACTATAACAAATCGATGTC----TGTGT-----------ATGTGGCTGGATTGTAAT--------------TAGCATTAACGTTAAA------AAATAA
droMoj3	scaffold_6540:32590590-32590824 +		ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTC-TACCCCACACTTA-CA--------CAT-----------------------A-------------------------CTCACACACA-CA----C--ACA-------------TAC--------------ACACATAT--GCACATT--------------------------T----TAAAA-AA----------------GAT--------------TA---------------------AC----AA-A--AAGAATGAAAGTAA----------------------------------------TAC-TT-------AACAATAAT----------------------------------CTCGCGCAAAC----ATCATA-AACTATAACTAATCGATGTC----TGTGT-----------ATGTGGCTGGATTGTAA----------T----TAGC------------------------
droGri2	scaffold_15074:2283055-2283359 +		ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAATTCAAGGTGCCAATCAAGTCAATTTCTACTAC-CCAAACA-------CACATACAC-----------------------A-------------------------CTCGCACAC-ACATACACACACA-------------CACAC------------ACATATAT--ACACTCACA------------CTAACATTAACACTGCACT-----TGTGTGTTAAACTTAAAGAA--------------A--------------------------------------------AACC---------------GATGAAAAAAAACAATACTAAAACTAAA-AA-------AGCGT---T------T---------------------------TAGCTGCAA-C----ATCATA-AACTATAACTTATCGATGTC----TGTGT-----------ATGTGGCTGGATTGTAATTAGCATAAG--------C------GTAAATTAAACTAAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATAAAGTCAATTTATACC---CCACACTAA-TA--------CAC-----------------------A-------------------------CCCACACACA-C--A--C---CA-------------CAC--------------ACACACTC--GCCAACTCA------------CTAACCTAAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----AACATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGATTAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................AATTAGTGAACTCAAGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...AAGCGTCCGCCACGTGACCCCTTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
ATGAAGCGTCCGCCACGTGACCCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.......GTCCGCCACGTGACCCCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................A----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGA...................................................................................................................	22	1	1.00	1	0	0	1	0

droSim2

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CAC-----------------------A-------------------------CCCACACAC-ACACA--C---CA-------------CAC--------------ACACACTC--GCCAACTCA------------CTAACCTCAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----AACATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................TAAATTAGTGAACTCAAGGTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TCAACGATAAATTAGTGAACTCAAGGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................CCCTTCAACGATAAATTAGTGAACTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GACCCCTTCAACGATAAATTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................CAAGTCAATTTATACC---CCACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTAGTGAACTCAAGGTGCCAATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----T...........................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

dm3

ATGAAGCGTCCACCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-AA--------CAC-----------------------A-------------------------CCCACACAC-ACACA--C---CACACAC-------------------------ACCCACTC--GCCAACTCA------------CTAACCTCAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--CAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-TTAGAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATTGTA-TTAGAATAAGT----............................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GATAAATTAGTGAACTCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GTCCACCACGTGACCCCTTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATGTGT-----------ATGTGGCTGGATTGTA-TT.........................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
.....................................TAGTGAACTCAAGGTGCCAATCAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CCACCACGTGACCCCTTCAACGATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CCACCACGTGACCCCTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGCGTCCACCACGTGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGT-----------ATGTGGCTG...................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CCCACACAC-ACACA--C---CAC.................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AA--------CAC-----------------------A-------------------------CCCACACAC-ACACA--C---....................................................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTAGTGAACTCAAGGTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TACAACC----AC----AC-----------------ACATCAC------------------------ACACA-------CACACA-------------CACAC--ATATAT--ATACACACTC--ACCAACTCA------------CTAACCTCAACCT----TTAAA-AG----------------GAT--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-ATAAAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
ATGAAGCGTCCGCCACGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.......................CTTCAACGATAAATTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGT-----------ATGTGGCTGGATTGTA-AT.........................................	24	1	1.00	1	0	0	0	0	0	1	0
......................CCTTCAACGATAAATTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.........CCGCCACGTGACCCCTTCAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................................ATTAGTGAACTCAAGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTT-ATGTGT-----------ATGTGGCTGG..................................................	21	1	1.00	1	0	0	1	0	0	0	0
...............................ATAAATTAGTGAACTCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................ACCAACTCA------------CTAACCTCAACCT----T...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..............................GATAAATTAGTGAACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
ATGAAGCGTCCGCCACGTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..........................CAACGATAAATTAGTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..GAAGCGTCCGCCACGTGACCCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...........................AACGATAAATTAGTGAACTCAAGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
..............ACGTGACCCCTTCAACGATAAATTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
.TGAAGCGTCCGCCACGTGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................CTTCAACGATAAATTAGTGAACTCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................ATAAATTAGTGAACTCAAGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
....................................................GCCAATCAAGTCAATTTATACC---CCACACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0

droYak3

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CACAC---------------------------------------------------------------------ACACACA-----------------------------CTC--ACCAACTCA------------CTAACCTTAACCT----TTAAA-AG----------------GAT--------------A---------------------------AGT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAAA-A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-ATAAAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......GTCCGCCACGTGACCCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
............................................................................................................................................................................................................................................................AAA-AG----------------GAT--------------A---------------------------AGT-C--AAGACTGAA-..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................GAACTCAAGGTGCCAATCAAGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CCGCCACGTGACCCCTTCAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......GTCCGCCACGTGACCCCTTCAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------ATGTGGCTGGATTGTA-ATAAA......................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................CAACGATAAATTAGTGAACTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-...........................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTT-ATGTGT-----------ATGTGGCTGGATTG..............................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................AATTAGTGAACTCAAGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..................................AATTAGTGAACTCAAGGTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................ATTAGTGAACTCAAGGTGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GAA-GTAA----------------------------------------AGA-AA-------AGCGCAAA.............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
ATGAAGCGTCCGCCACGTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CACAC-----------------------------------------------------------ACA--C---CACACACA-----------------------------CTC--ACCATCCCA------------CTAATCTCAACTA----CTAAA-AA----------------GAA--------------AAACCCCACCAAAAAAAAAAGAAAAGAAAAT-C--AAGTCTGAC-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAA--A----ACCATATAAATATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-T------------------------------TACACA-------------------------CATAC-CAC-ACACA--C---CACACACA-----------------------------CTC--ACCAACCCA------------CTAATCTCAACCA----CTAAA-AA----------------GAA--------------A---------------------------AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------C-AGAGAA--A----ACCATATAA-TATAACAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACC---CCACACTAA-TA--------CACAC------------------------------------------------ACACACAC--CACA--C---CACACACA-----------------------------CTC--ACCAGCCCA------------CTAATCTCAACCA----CTAAA-AA----------------AAT--------------TA---------------------AA---AAT-C--AAGACTGAA-GTAA----------------------------------------AGA-AA-------AGCGCAAAT----------------------------------CAAGAGAA--A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGA----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CACAC-------------------------------------------------------------A--C---CGC-CACA-----------------------------CTC--A----CCCA------------CTAATCTCAACCA----CTAAA-AA----------------GAA--------------AG---------------------AA---AATAC--AAGTCTGAA-GTAA----------------------------------------AGA-AA-------AGCGTAAAT----------------------------------CAAGAGAA--A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-TTAAAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CACAC-------------------------------------------------------------A--C---CACACACA-----------------------------CTC--ACCAACCCA------------CTAATCTCAACTA----CTAAAAAA----------------GAA--------------AA---------------------AAG---AA-C--ATGTCTGAA-GTAA----------------------------------------AGA-AA-------AGCGTAAAT----------------------------------CAAAAGAA--A----ACCATATAAATATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGAATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CAC-----------------------ACGCCACACAC----------------ACACACTC--CACA--C---CAC-----------------------------ACACACTT--ACCAACCCA------------CTAATCTCAACCA----CTAAA-AT----------------GAA--------------A------------------AGAAAAG---AA-C--AAGTCTGAA-GTAA----------------------------------------AGA----------AGCGCAAAT----------------------------------CAAGAGAA--A----ACCATATAACTATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTA-CTAGATTAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------CACAC-------------------------------------------------------------A--C---CACACACACTCACCACTC--------------ACCCAC-C--GCCAAC---------------CTAATCTCAACCA----CTAAA-GC----------------GAC--------------A---------------------------A------AAGTCTGAA-CTAA----------------------------------------AGAAAA-------AGCGCAAAG----------------------------------CAAGAGAA--A----CCCATATAAATATAACAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTAATTAGCATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------C--------------------CA---------------------------------CACACA-------C--ACA-------------CACACACACACGCCCACAC---CCCAC-CCACCACA------------CTAATCTCAACTA----CTAAA-AA------------------TTAAAAACCAA--ACA---------------------------AAT-CA-AAGTCTGAACGTAA----------------------------------------AGATAA-------AGCGCAAAT----------------------------------CGAGAGAA--A----CCCATATAAATATAGCAT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTAACTAGCATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......CGTCCGCCACGTGACCCCTTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.........CCGCCACGTGACCCCTTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AA-------AGCGCAAAT----------------------------------CGAGAGA...................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................................ATTAGTGAACTCAAGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......GTCCGCCACGTGACCCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........CCGCCACGTGACCCCTTCAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
ATGAAGCGTCCGCCACGTGACCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................CAACGATAAATTAGTGAACTCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................CTTCAACGATAAATTAGTGAACTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................CAACGATAAATTAGTGAACTCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..........................CAACGATAAATTAGTGAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......GTCCGCCACGTGACCCCTTCAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................ATTAGTGAACTCAAGGTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0
...........................................................................................................................................................CACA-------C--ACA-------------CACACACACACGCC.......................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0
............................................................................................................................................................ACA-------C--ACA-------------CACACACACACGC........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTAA-TA--------C--------------------CA---------------------------------CACACA-TA----C--ACA-------------CACACACACATGC-CACACCCCCCCAC-CCACCACA------------CTAATCTCAACTA----CTAAA-CT------------AAA---TAAAAAACCAAAAACA---------------------------AAT-CAAAAGTCTGAA-A-----------------------------------------------------------GCAAAT----------------------------------CGAAAGAA--A----AGCATATAAATATAGCAT----ATGTCTTAATGTGT-----------ATGTGGCTGGATTGTAACTAGCATAAGT----TGGC------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....GCGTCAGCCGAGAGATCCGTATCGCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

ATGAAGCGTCCGCCCCGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCACACTACATA--------CACACACAC-----------------G--CC-------------TACACACACTCACCCACA--------------------------CAC--------------ACACACAC--ACAAACACACCATACTAAAAACTAATCTCCTTGA----CTAAA-A-----------------GAA--------------A------------------------------------------A-GAAA----------------------------------------AGA-AAAGACAACAGCG--AAT------------------ACTTAATAACAAACAGCAAGAGAAT-A----ACCATATAACTATAGCAT----ATGT----ATGTCTCACAAATACAACTGTGGCTGGATTGTAACTATCATAAGTCCTTTGGC------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................CAACGATAAATTAGTGAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................AAATTAGTGAACTCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGGCTGGATTGTAACT.........................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTATAGCAT----ATGT----ATGTCT.......................................................................	23	1	1.00	1	0	0	1	0	0	0

droWil2

ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---CCCCAC-----ACACCC----AC----AAACATACTAAAATCA---------C--------------ACACAATAACTAACA-------CACACACACAC-------------------------ACCCACCC--ACCCACACA------------CTAAC------------TTAAA-AG----------------------------------------------------------------------GTGTGCA-GTAATTTCTATAAAAGTAA-------------------------AA-------------------CCTCGAAATTACTGCACCGACTTAA--AAAAAA------CGCAAAAATGAA--ACATAACTATAACGT----ATGTCTT-ATGTGT-----------ATGTGGCTGGATTGTAATTAGCATAAGT----TCGC------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................AAC------------TTAAA-AG----------------------------------------------------------------------GTGTGCA-GT............................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
.......................................GTGAACTCAAGGTGCCAATCAAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
.TGAAGCGTCCGCCACGTGACCCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
ATGAAGCGTCCGCCACGTGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.......GTCCGCCACGTGACCCATTCAACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................CCCATTCAACGATAAATTAGTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0

droVir3

ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTACC---TCACACA-------------CAC-----------------------A---------CACACACTCACACACA---------------------AT-------------CAC--------------ACACATGT--GCACACTTA-------------------------------------------------------------------------------------------------------------ATGAAAAATA----------------------------------------TAC-TA-------AACAAA--------------------------------------TCGCGCAG-C----ATCGTA-AACTATAACAAATCGATGTC----TGTGT-----------ATGTGGCTGGATTGTAAT--------------TAGCATTAACGTTAAA------AAATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................CAACGATAAATTAGTGAACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAACGATAAATTAGTGAACTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GAAGCGTCCGCCACGTGACCCATTCAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................GATAAATTAGTGAACTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GAAGCGTCCGCCACGTGACCCATTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCGTCCGCCACGTGACCCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGCGTCCGCCACGTGACCCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GTCCGCCACGTGACCCATTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CACACTCACACACA---------------------AT-------------CAC--------------A...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.TGAAGCGTCCGCCACGTGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAACGATAAATTAGTGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAACGATAAATTAGTGAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAACGATAAATTAGTGAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTCTC-TACCCCACACTTA-CA--------CAT-----------------------A-------------------------CTCACACACA-CA----C--ACA-------------TAC--------------ACACATAT--GCACATT--------------------------T----TAAAA-AA----------------GAT--------------TA---------------------AC----AA-A--AAGAATGAAAGTAA----------------------------------------TAC-TT-------AACAATAAT----------------------------------CTCGCGCAAAC----ATCATA-AACTATAACTAATCGATGTC----TGTGT-----------ATGTGGCTGGATTGTAA----------T----TAGC------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATCGATGTC----TGTGT-----------ATGTGGCT....................................................	25	1	1.00	1	0	0	0	0	0	1
...........................AACGATAAATTAGTGAACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....AGCGTCCGCCACGTGACCCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................CATTCAACGATAAATTAGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........CGCCACGTGACCCATTCAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......CGTCCGCCACGTGACCCATTCAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................CATTCAACGATAAATTAGTGAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

ATGAAGCGTCCGCCACGTGACCCATTCAACGATAAATTAGTGAATTCAAGGTGCCAATCAAGTCAATTTCTACTAC-CCAAACA-------CACATACAC-----------------------A-------------------------CTCGCACAC-ACATACACACACA-------------CACAC------------ACATATAT--ACACTCACA------------CTAACATTAACACTGCACT-----TGTGTGTTAAACTTAAAGAA--------------A--------------------------------------------AACC---------------GATGAAAAAAAACAATACTAAAACTAAA-AA-------AGCGT---T------T---------------------------TAGCTGCAA-C----ATCATA-AACTATAACTTATCGATGTC----TGTGT-----------ATGTGGCTGGATTGTAATTAGCATAAG--------C------GTAAATTAAACTAAAAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....AGCGTCCGCCACGTGACCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...AAGCGTCCGCCACGTGACCCATTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0

dse_1260

scaffold_38:332870-333020 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.0	-5.6	-5.5