ID:

dse_1259

 Coordinate:

scaffold_38:286974-287200 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.8 -37.5 -37.5

Flybase annnotation

CDS [Dsec\GM15056-cds]; CDS [Dsec\GM15056-cds]; exon [dsec_GLEANR_15846:7]; exon [dsec_GLEANR_15846:8]; intron [Dsec\GM15056-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAGTCCTTTAGTAAATCTTTAAAATTTAAGGTGCTTGCCCCAAAGTTAGTACTTAAATATCTTTAAATGAAATACTTATGTTCTTGAAACTTGGGCAAGTAGACTGGATAGCACAGCGGATTTGGTCTTTGACTAAATTTAAGAAATAACATAATAATTTCAATATTTTAACTAGAGTGTCTAAGTATAATATCCCTTATTCTAACAAATTCATATTTCTAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTGCCATAA
**************************************************((((((....(((((((.....(((((((((((((.((((.((......)).)))))))))))...))))))((((((..(((((((((((((..((((.(((..(((((((((.((...))..)))))))))))).)))).)))))))....))))))..))))))........)))))))(((...((.((((......)))).)).))).))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
 V113
male body		 V115
head
.................................................................................................................................GTTATGTTCTTGAAACTT.................................................................................................................................................................................... 18 1 1 38.00 38 38 0 0 0
................................................................................................................................AGTTATGTTCTTGAAACT..................................................................................................................................................................................... 18 1 1 18.00 18 17 1 0 0
..............................................................................................................................ATAGTTATGTTCTTGAAACT..................................................................................................................................................................................... 20 1 1 17.00 17 14 1 1 1
.............................................................................................................................AATAGTTATGTTCTTGAAACT..................................................................................................................................................................................... 21 1 1 13.00 13 5 3 5 0
................................................................................................................................AGTTATGTTCTTGAAACTT.................................................................................................................................................................................... 19 1 1 9.00 9 6 2 0 1
...........................................................................................................................GTAATAGTTATGTTCTTGAAA....................................................................................................................................................................................... 21 2 1 8.00 8 4 1 2 1
...............................................................................................................................TAGTTATGTTCTTGAAACT..................................................................................................................................................................................... 19 1 1 8.00 8 7 1 0 0
.............................................................................................................................AATAGTTATGTTCTTGAAACTT.................................................................................................................................................................................... 22 1 1 7.00 7 3 1 3 0
..............................................................................................................................ATAGTTATGTTCTTGAAACTT.................................................................................................................................................................................... 21 1 1 7.00 7 6 0 1 0
..............................................................................................................................ATAGTTATGTTCTTGAAAC...................................................................................................................................................................................... 19 1 1 7.00 7 1 5 0 1
...............................................................................................................................TAGTTATGTTCTTGAAACTT.................................................................................................................................................................................... 20 1 1 6.00 6 3 1 1 1
.............................................................................................................................AATAGTTATGTTCTTGAAA....................................................................................................................................................................................... 19 1 1 6.00 6 4 2 0 0
...............................................................................................................................TAGTTATGTTCTTGAAAC...................................................................................................................................................................................... 18 1 1 5.00 5 4 1 0 0
..............................................................................................................................ATAGTTATGTTCTTGAAA....................................................................................................................................................................................... 18 1 1 4.00 4 4 0 0 0
.............................................................................................................................AATAGTTATGTTCTTGAA........................................................................................................................................................................................ 18 1 1 3.00 3 3 0 0 0
.............................................................................................................................AATAGTTATGTTCTTGAAAC...................................................................................................................................................................................... 20 1 1 3.00 3 0 3 0 0
............................................................................................................................TAATAGTTATGTTCTTGAAAC...................................................................................................................................................................................... 21 2 2 2.50 5 1 4 0 0
.............................................................................................................................AATAGTTATGTTCTTGAAACA..................................................................................................................................................................................... 21 2 1 2.00 2 1 0 0 1
...........................................................................................................................GTAATAGTTATGTTCTTGAAACT..................................................................................................................................................................................... 23 2 1 2.00 2 0 1 1 0
...........................................................................................................................GTAATAGTTATGTTCTTGA......................................................................................................................................................................................... 19 2 5 1.20 6 4 2 0 0
........................ATGACCTTCAACGTGGAGCCGGGAACC.................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
............................................................................................................................TAATAGTTATGTTCTTGAAACT..................................................................................................................................................................................... 22 2 2 1.00 2 1 0 1 0
..............................................................................................................................ATAGTTATGTTCTTGAAACA..................................................................................................................................................................................... 20 2 2 1.00 2 1 0 0 1
............................................................................................................................TAATAGTTATGTTCTTGAA........................................................................................................................................................................................ 19 2 6 1.00 6 5 1 0 0
......................................................................................................................................................................................................................................................................................ATTGGATTTGCCGTGGCGCTCTT.......................... 23 0 1 1.00 1 0 0 1 0
......................................................................................................................................................................................................................................................................................ATTGGATTTGCCGTGGCGCTCT........................... 22 0 1 1.00 1 1 0 0 0
..............................................................................................................................ATAGTTATGTTCTTGAAACTTA................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0
............................................................................................................................................GAAACTTGGGCAAGTAGACTGGA.................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................GGCGCTCTTCTGCGGCGA................. 18 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................GGCGCTCTTCTGCGGCGAGGCCCTGA......... 26 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................................................................................CATTGGATTTGCCGTGGCGCT............................. 21 0 1 1.00 1 1 0 0 0
...........................................................................................................................GTAATAGTTATGTTCTTGAA........................................................................................................................................................................................ 20 2 1 1.00 1 0 1 0 0
...........................................................................................................................GTAATAGTTATGTTCTTGAAAC...................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0
..............................................................................................................................................................CTGGATAGCACAGCGGATTT..................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................................................................................CAATAGTTATGTTCTTGAAA....................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1
..........................................................................................................................AGTAATAGTTATGTTCTTGAAAC...................................................................................................................................................................................... 23 3 3 1.00 3 0 3 0 0
...........................................................................................................................GTAATAGTTATGTTCTTGAAACTTA................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0
...........................................................................................................................GTAATAGTTATGTTCTTGAAACTT.................................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0
............................................................................................................................TAATAGTTATGTTCTTGAAA....................................................................................................................................................................................... 20 2 3 1.00 3 3 0 0 0
................................................................................................................................AGTTATGTTCTTGAAACTTA................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0
..............................................................................................................................ATAGTTATGTTCTCGAAACT..................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0
..........................................................................................................................AGTAATAGTTATGTTCTTGAAACT..................................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0
.................................................................................................................................GTTATGTTCTTGAAACTTA................................................................................................................................................................................... 19 2 7 0.43 3 3 0 0 0
..........................................................................................................................AGTAATAGTTATGTTCTTGAA........................................................................................................................................................................................ 21 3 12 0.42 5 2 2 1 0
..................................................................................................................................TTATGTTCTTGAAACTTA................................................................................................................................................................................... 18 1 3 0.33 1 1 0 0 0
...............................................................................................................................................................TGGATAGCGCACCGGATT...................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0
.................................................................................................................................GTTATGTTCTTGAAGCTT.................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0
...............................................................................................................................TAGTTATGTTCTTGAAACTTAA.................................................................................................................................................................................. 22 3 4 0.25 1 0 1 0 0
..........................................................................................................................AGTAATAGTTATGTTCTTGAAA....................................................................................................................................................................................... 22 3 7 0.14 1 0 0 1 0
...............................................................................................................................TAGTTATGTACTTGAAACT..................................................................................................................................................................................... 19 2 8 0.13 1 1 0 0 0
..................................................................................................................................................................................................................................................................................AACCATTGGATTTGCCGT................................... 18 2 9 0.11 1 1 0 0 0
...............................................................................................................................TAGTTGTGTTCTTGAAACTTA................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 1
............................................................................................................................TAATAGTTATGTTCTTGA......................................................................................................................................................................................... 18 2 19 0.11 2 2 0 0 0
............................CTTTCAACGTGGAGACCGG........................................................................................................................................................................................................................................................................................ 19 3 10 0.10 1 0 1 0 0
.................................................................................................................................GCTATGTTCTTGAAACTT.................................................................................................................................................................................... 18 2 10 0.10 1 1 0 0 0
.................................................................................................................................GTTATGTTCTTGGAACTT.................................................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0
................................................................................................................................AGTTATGTTCTTGAAACTTAA.................................................................................................................................................................................. 21 3 15 0.07 1 0 1 0 0
.............................................................................................................................AATAGTTATTTTCTTGAAA....................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0
..CGACTACCGCAGCTCCCGT.................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

CGGCAGATGGTGTCGAGGGTACCGTACTGGAAGTTGCACCTCGGCCCTTGCACTCATCAGGAAATCATTTAGAAATTTTAAATTCCACGAACGGGGTTTCAATCATGAATTTATAGAAATTTACTTTATGAATACAAGAACTTTGAACCCGTTCATCTGACCTATCGTGTCGCCTAAACCAGAAACTGATTTAAATTCTTTATTGTATTATTAAAGTTATAAAATTGATCTCACAGATTCATATTATAGGGAATAAGATTGTTTAAGTATAAAGATCGTAACCTAAACGGCACCGCGAGAAGACGCCGCTCCGGGACTAACGGTATT
**************************************************((((((....(((((((.....(((((((((((((.((((.((......)).)))))))))))...))))))((((((..(((((((((((((..((((.(((..(((((((((.((...))..)))))))))))).)))).)))))))....))))))..))))))........)))))))(((...((.((((......)))).)).))).))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
 V113
male body
...............AGGGTACCGTACTGGAAGTTGCAC................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0
..........TGTTGAGGGTACCACACTG.......................................................................................................................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 1
.....................................................................................................................................................CGTTCATCAGACGGATCGT............................................................................................................................................................... 19 3 12 0.08 1 0 1 0
...........GTTGAGGGTACCACACTGG......................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0
...........GTGGAGGGTACCACACTG.......................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0
...........GTTGAGGGTACCACACTG.......................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_38:286924-287250 - dse_1259 GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAGTCCT--TT-------AGTAAATCTTTAAAATTTAAGGTGCTTGCCCCAAAGTTAGTACTTAAATATCTTTAAATGAAATACTTATGTTCTTGAAACTTGGGCAAGT---AGACT---------------GGATAGCA------------CAG-------------CGGATTTGGTCTTTGACTAAATT--------------------------------------TAAGAAATAACATAATAATTTCAATATTTTAACTAGAGTGTCT------AA--GTATAAT-----------------ATCCCTTATTCTAACAAATTCATATTTCTAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATAA
droSim2 3r:4464607-4464933 - dsi_26475 GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAATCCT--TT-------AGTAAATCTTTAAAATTTAAAGTGCTTGTCCCAAAATTAGTACTTAAATATCTTTAAATTAAATACTTATATTTTTGAAACTTGGGCAAGT---AGACT---------------GGATAGCA------------CAG-------------TGGATTTTGTCTTTGACTAAATT--------------------------------------TAAGAAATAACATAATAATTGCAGTATTTTAACTACAGTGTCT------AA--GTATAAT-----------------ATCCCTTATTCTAACAAATTTGTAATTCTAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATAA
dm3 chr3R:16838338-16838662 + GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAGTCCT--TT-------AGTACA---------TTTAATGTGCTTGCCTTAAAGTTAGTATTTAAATATCTTTAAATGAAATACTTATGTTCTTGAAACTTGGGCAAGTAGTAGAC----------------GGTTAGCA------------GAG-------------TGAATTTGTTTTTTGAGTAAATTT---------------------------------AATTTAAGAAATAAGAAAATAATTTCAGTATTTTAACTTCAGTTTCT------AA--GTATAGT-----------------ATCCCTTATTCTAATAAATTTATAATTCTAGCATTGGATTCGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATAA
droEre2 scaffold_4770:4817543-4817745 - der_542 GCCGTCTACCACAGCTCCCATGGGTTGACCTTCAATGTAGAGCCGGGGACGTGAGTATTCCT--TGTT-CTTAAGTTCACCTTTAATATGTAAAGTGCTTGCACCAAAATTACTACT--------ATTAAATTAAATATTTATGTTCTTGAAACTTGCGCAAGT---AGACTACAT----------AGGTTAGCG------------CAA-------------TGG-----G---------AAATT-------------------------------------------------------------------TGATTAAAATATCT------GA--GAAA------------------------------------------------------------------------------------------------------------
droYak3 3R:5640102-5640395 + GCCGTCTACCACAGCTCCCATGGCCTGACCTTCAACGTGGAGCCGGGGACGTGAGTATTCCT--TGTC-CTTAAGTACACCTTTTAAAAGT-----------------------------------------------------------AAACTTGGGCAAGT---AGACTAGTATAAATAAACAAGGTTATCCTGCTC--------------------TCTTATGGCTT--TATCGA--TTGATTACTAAAAATTAATAGCTAAATAAAACTTTTATAGATCT---------------------------------ATTCTTTGA------GT--GAA-GGA-----------------ACCCTTTATTCTAACCTATTTACAATTTCAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATCA
droEug1 scf7180000409542:306216-306306 - GCAGTCTACCACAGCTCCCATGGCGGGATCTTCAAAGTAGAACCGGGAACGTAAGTAATCAC--T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTA---------------------------------------------GAACGTAA---------------------------------ATTATTT--AATTTTT---------------------------------------------------------AG
droBia1 scf7180000302155:188774-188841 + GCAGTCTACCACAGCTCCCATGGCGGGACCTTCAACGTGGAGCCGGGAACGTGAGTAATCCT--TG-------AATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415750:423081-423142 - GCAGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAATCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491080:716148-716296 + GCCGTATACCACAGCTCCCATGGAGCCACCTTCAACGTGGAGCCGGGAACGTGAGTAACCCT--AGCC-A------A------------------------------------------A-----------------A----TGT-----------------------------------------------TCT---CAAAATCAATATACATTTATA-TTTTGTATCTTGATTTTGAC---ACT--------------------------------------TAAAAA-----------------------------------AT-----------------------------------------------------------------------------------------------------TATCATTGAAAGACGTATTTT
droRho1 scf7180000779659:427136-427248 + GCCGTCTACCACAGCTCCCATGGCAATGCCTTCTTCGTGGAGCCGGGAACGTAAGTACACCA--AT-------AAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CC--------------------------------------TTAGAA-----------------------------------CATTGCTTA----GAC---------------------------------TTGAAAT--GATTTTTA---------------AAGCTT---------------------------------TTTA
droFic1 scf7180000454096:105556-105651 + GCCGTTTACCACAGCTCCCATGGCAAGACCTTCAACGTGGAGCCGGGAACGTGAGTAACCGCAAAT-------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG--GGAA---------------------------------TTTATTT--AGTTTTTA---------------AGGCACT-----------------------------------T
droKik1 scf7180000302809:99676-99962 + GCCGTATACCACAGCTCGCATGGCATGACGTTCAACGTTGAGCCTGGAACGTAAGTAATCCC--TAGCCA------A-TTATGGAAG----ATAGTCCTTGTC--AAACTAGGAACC--------AATGAATAAGAAA----TGA-----------------------------------------------TCCTTCTATACTCCAGAGACATTTTTAATCTTGTTCCTT--TGTTGA--TAATTT---------------------------------GTTCT---------------------------------AAAATATAA------GT--GGAA-AATATTGAAAATTGAAATTGATACGAATTCAAACCATTTT--CCTTACAGAATCGGCTTTGCTGTGGCGCTATTCTGCGGCGAGGCCCTGATTG-------CCGTTC
droAna3 scaffold_13340:8095198-8095271 + GCTGTCTACCACAGCTCCCAAGGGATGACCTTCAACGTGGAACCGGGAACGTGAGTACCTTC--GGCC-TCT-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA
droBip1 scf7180000396708:752465-752530 - AAAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCAGGATTGGCTTTGCTGTGGCGCTGTTCTGCGGCGAGGCTTTAATTG-------CCATCC
dp5 2:12598481-12598561 - TCCATTTACCACATGTCCCATGGCGGGACCTTCAACGTGGAGCCGGGAACGTAAGTCTGCCT--TT-------GACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------------------------TTCAAA-----------------------------------CT----------G-------------------------------------------------------------------------------------------------------------AA
droPer2 scaffold_0:7868495-7868573 + TCCATTTACCACATGTCCCATGGCGGGACCTTCAACGTGGAGCCGGGAACGTAAGTCTGCCT--TT-------GACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------------------------TTCAAA-----------------------------------TT-------------------------------------------------------------------------------------------------------------------------T
droWil2 scf2_1100000004902:6170113-6170170 + GCCATCTATCACATGTCCCATGGCATGACCTTCAATGTGGAGCCGGGAACGTGAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:2343223-2343298 + AAACTCAACTCTATTTCTCATCTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTGGCTTCGCTGTGGCGCTCTTCTGTGGCTCGGCCGTCATCG-------CTGTTG
droMoj3 scaffold_6540:32656871-32656954 + ATAAC-------AGTTGTCCTAAT-------------------------------------------------------------------------------------------------------------------------------------------------ACT---------------AGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCAGCATTGGCTTTGCTGTGACGCTCTTCTGCGGCGAGGCTGTCATTG-------CCATTG
droGri2 scaffold_15074:2338569-2338624 + TCAATCTATCACATGGCCCATGGCACAACCTTCAATGTGGAACCGGGCACGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAGTCCT--TT-------AGTAAATCTTTAAAATTTAAGGTGCTTGCCCCAAAGTTAGTACTTAAATATCTTTAAATGAAATACTTATGTTCTTGAAACTTGGGCAAGT---AGACT---------------GGATAGCA------------CAG-------------CGGATTTGGTCTTTGACTAAATT--------------------------------------TAAGAAATAACATAATAATTTCAATATTTTAACTAGAGTGTCT------AA--GTATAAT-----------------ATCCCTTATTCTAACAAATTCATATTTCTAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................ATGACCTTCAACGTGGAGCCGGGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTTGCCGTGGCGCTCTT.................................2311.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTTGCCGTGGCGCTCT..................................2211.0010010
.....................................................................................................................................................GAAACTTGGGCAAGT---AGACT---------------GGA...................................................................................................................................................................................................................................................................2311.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTCTTCTGCGGCGA........................1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTCTTCTGCGGCGAGGCCCTGA................2611.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGGATTTGCCGTGGCGCT....................................2111.0010010
..........................................................................................................................................................................CT---------------GGATAGCA------------CAG-------------CGGATTT...........................................................................................................................................................................................................................2011.0010010
...........................................................................................................................................TTATGTTCTTGAAACTTA....................................................................................................................................................................................................................................................................................................1830.3310010
droSim2
GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAATCCT--TT-------AGTAAATCTTTAAAATTTAAAGTGCTTGTCCCAAAATTAGTACTTAAATATCTTTAAATTAAATACTTATATTTTTGAAACTTGGGCAAGT---AGACT---------------GGATAGCA------------CAG-------------TGGATTTTGTCTTTGACTAAATT--------------------------------------TAAGAAATAACATAATAATTGCAGTATTTTAACTACAGTGTCT------AA--GTATAAT-----------------ATCCCTTATTCTAACAAATTTGTAATTCTAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCCGTGGCGCTCTTCTGCGGC..........................2611.00100010000000000000
........................ATGACCTTCAACGTGGAGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTCTGCGGCGAGGCC....................1811.00100010000000000000
..CGTCTACCACAGCTCCCATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGGATTTGCCGTGGCGCT....................................2111.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGGATTTGCCGTGGCGCTC...................................2211.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCGGCGAGGCCCTGATTG-------CC....2411.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCGCTCTTCTGCGGCGAG.......................2211.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGAGGCCCTGATTG-------CC....2111.00110000000000000000
..................................................................................................................................ATTAAATACTTATATTTTTT...........................................................................................................................................................................................................................................................................................................2030.33100010000000000000
................................CAACGTGGAGCCGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................1650.20100000000010000000
dm3
GCCGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAGTCCT--TT-------AGTACA---------TTTAATGTGCTTGCCTTAAAGTTAGTATTTAAATATCTTTAAATGAAATACTTATGTTCTTGAAACTTGGGCAAGTAGTAGAC----------------GGTTAGCA------------GAG-------------TGAATTTGTTTTTTGAGTAAATTT---------------------------------AATTTAAGAAATAAGAAAATAATTTCAGTATTTTAACTTCAGTTTCT------AA--GTATAGT-----------------ATCCCTTATTCTAATAAATTTATAATTCTAGCATTGGATTCGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCGGCGAGGCCCTGATTG-------......2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGCGAGGCCCTGATTG-------C.....2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTTCAACGTGGAGCCGGGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AATACTTATGTTCTTGAAACTT.....................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATTT---------------------------------AATTTAAGAAATAA...........................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCGCTCTTCTGCGGCGA........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AACGTGGAGCCGGGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............AGCTCCCATGGCATGACCTTCAACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCGCTCTTCTGCGGC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GAGTAGTCCT--TT-------AGTACA---------TT.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCTTCTGCGGCGAGGCCCTGATTG-------C.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGCGCTCTTCTGCGGCGAGGCCCT..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CCGTCTACCACAGCTCCCATGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAGCATTGGATTCGCCGTGGC.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACAGCTCCCATGGCATGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AATACTTATGTTCTTGAAACT......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................ATGACCTTCAACGTGGAGCCGGGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGACCTTCAACGTGGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCTTCTGCGGCGAGGCCCT..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCGAGGCCCTGATTG-------C.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCCCTTATTCTAATAAATTTATAATTCTAG.........................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCATGGCATGACCTTCAACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................AAATACTTATGTTCTTGAAA........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGGATTCGCCGTGGCGCTCTT.................................2411.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGAGGCCCTGATTG-------CC....2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGCGGCGAGGCCCTGATTG-------C.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CATGGCATGACCTTCAACG............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTCGCCGTGGCGCTCT..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTATGTTCTTGAAACTTGGA..................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCATGACCTTCAACGTGGAGCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................AATACTTATGTTCTTGAAAAA......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AATACTTATGTTCTTGAA.........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AATATCTTTAAATGAAAT........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCGTGGCGCTCTTCTGCG............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AATACTTATGTTCTTGAAAC.......................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTCGCCGTGGCGCTCTTCTGCGG...........................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTATAATTCTAGCA.......................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGCGAGGCCCTGATTG-------......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TACTTATGTTCTTGAAACT......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGCATGACCTTCAACGTGGAGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATGACCTTCAACGTGGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGAGGCCCTGATTG-------TGT...2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................CAACGTGGAGCCGGGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACGTGGAGCCGGGAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
GCCGTCTACCACAGCTCCCATGGGTTGACCTTCAATGTAGAGCCGGGGACGTGAGTATTCCT--TGTT-CTTAAGTTCACCTTTAATATGTAAAGTGCTTGCACCAAAATTACTACT--------ATTAAATTAAATATTTATGTTCTTGAAACTTGCGCAAGT---AGACTACAT----------AGGTTAGCG------------CAA-------------TGG-----G---------AAATT-------------------------------------------------------------------TGATTAAAATATCT------GA--GAAA------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................ATTTATGTTCTTGAAACT......................................................................................................................................................................................................................................................................................................1812.0020200000
GCCGTCTACCACAGCTCCCATGGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
............................CCTTCAATGTAGAGCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.........................TGACCTTCAATGTAGAGCCGGGGACCAT............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..........................GACCTTCAATGTAGAGCCGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.........................TGACCTTCAATGTAGAGCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
......................................................................................................................................AATATTTATGTTCTTGAA.........................................................................................................................................................................................................................................................................................................1811.0010000010
..........................................................................................................................................................................CTACAT----------AGGTTAGCG------------CAA-------------TGG-----G---------A...............................................................................................................................................................................................................2311.0010000010
droYak3
GCCGTCTACCACAGCTCCCATGGCCTGACCTTCAACGTGGAGCCGGGGACGTGAGTATTCCT--TGTC-CTTAAGTACACCTTTTAAAAGT-----------------------------------------------------------AAACTTGGGCAAGT---AGACTAGTATAAATAAACAAGGTTATCCTGCTC--------------------TCTTATGGCTT--TATCGA--TTGATTACTAAAAATTAATAGCTAAATAAAACTTTTATAGATCT---------------------------------ATTCTTTGA------GT--GAA-GGA-----------------ACCCTTTATTCTAACCTATTTACAATTTCAGCATTGGATTTGCCGTGGCGCTCTTCTGCGGCGAGGCCCTGATTG-------CCATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCGGCGAGGCCCTGATTG-------CC....2411.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCTGCGGCGAGGCCCTG.................2011.00101000000000
....................................GTGGAGCCGGGGACGTGAGTATTCCT--T................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGCGAGGCCCTGATTG-------CCAT..2511.00100100000000
droEug1
GCAGTCTACCACAGCTCCCATGGCGGGATCTTCAAAGTAGAACCGGGAACGTAAGTAATCAC--T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTA---------------------------------------------GAACGTAA---------------------------------ATTATTT--AATTTTT---------------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droBia1
GCAGTCTACCACAGCTCCCATGGCGGGACCTTCAACGTGGAGCCGGGAACGTGAGTAATCCT--TG-------AATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCAGTCTACCACAGCTCCCATGGCATGACCTTCAACGTGGAGCCGGGAACGTGAGTAATCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCCGTATACCACAGCTCCCATGGAGCCACCTTCAACGTGGAGCCGGGAACGTGAGTAACCCT--AGCC-A------A------------------------------------------A-----------------A----TGT-----------------------------------------------TCT---CAAAATCAATATACATTTATA-TTTTGTATCTTGATTTTGAC---ACT--------------------------------------TAAAAA-----------------------------------AT-----------------------------------------------------------------------------------------------------TATCATTGAAAGACGTATTTTSizeHit CountTotal NormTotal
No Reads
droRho1
GCCGTCTACCACAGCTCCCATGGCAATGCCTTCTTCGTGGAGCCGGGAACGTAAGTACACCA--AT-------AAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CC--------------------------------------TTAGAA-----------------------------------CATTGCTTA----GAC---------------------------------TTGAAAT--GATTTTTA---------------AAGCTT---------------------------------TTTASizeHit CountTotal NormTotal
No Reads
droFic1
GCCGTTTACCACAGCTCCCATGGCAAGACCTTCAACGTGGAGCCGGGAACGTGAGTAACCGCAAAT-------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG--GGAA---------------------------------TTTATTT--AGTTTTTA---------------AGGCACT-----------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
GCCGTATACCACAGCTCGCATGGCATGACGTTCAACGTTGAGCCTGGAACGTAAGTAATCCC--TAGCCA------A-TTATGGAAG----ATAGTCCTTGTC--AAACTAGGAACC--------AATGAATAAGAAA----TGA-----------------------------------------------TCCTTCTATACTCCAGAGACATTTTTAATCTTGTTCCTT--TGTTGA--TAATTT---------------------------------GTTCT---------------------------------AAAATATAA------GT--GGAA-AATATTGAAAATTGAAATTGATACGAATTCAAACCATTTT--CCTTACAGAATCGGCTTTGCTGTGGCGCTATTCTGCGGCGAGGCCCTGATTG-------CCGTTCSizeHit CountTotal NormTotal
No Reads
droAna3
GCTGTCTACCACAGCTCCCAAGGGATGACCTTCAACGTGGAACCGGGAACGTGAGTACCTTC--GGCC-TCT-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................CTTCAACGTGGAACCGGGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
AAAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCAGGATTGGCTTTGCTGTGGCGCTGTTCTGCGGCGAGGCTTTAATTG-------CCATCCSizeHit CountTotal NormTotal
No Reads
dp5
TCCATTTACCACATGTCCCATGGCGGGACCTTCAACGTGGAGCCGGGAACGTAAGTCTGCCT--TT-------GACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------------------------TTCAAA-----------------------------------CT----------G-------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................GGACCTTCAACGTGGAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020010100000
..................CATGGCGGGACCTTCAACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.........................GGACCTTCAACGTGGAGCCGGGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
............................CCTTCAACGTGGAGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...ATTTACCACATGTCCCATGGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................ACCTTCAACGTGGAGCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
TCCATTTACCACATGTCCCATGGCGGGACCTTCAACGTGGAGCCGGGAACGTAAGTCTGCCT--TT-------GACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------------------------------------TTCAAA-----------------------------------TT-------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................GACCTTCAACGTGGAGCCGGGAACGATT...........................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droWil2
GCCATCTATCACATGTCCCATGGCATGACCTTCAATGTGGAGCCGGGAACGTGAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAACTCAACTCTATTTCTCATCTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTGGCTTCGCTGTGGCGCTCTTCTGTGGCTCGGCCGTCATCG-------CTGTTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGCTGTGGCGCTCT..................................1811.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGCTGTGGCGCTCC..................................1811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCTGTGGCGCTCTTCTGTGG...........................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTGTGGCGCTCTTCTG..............................2011.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGGCTTCGCTGTGGC.......................................1811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGGCCGTCATCG-------CTGTTG2211.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATAAC-------AGTTGTCCTAAT-------------------------------------------------------------------------------------------------------------------------------------------------ACT---------------AGATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCAGCATTGGCTTTGCTGTGACGCTCTTCTGCGGCGAGGCTGTCATTG-------CCATTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTGACGCTCTTCTGCGGCGA........................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGCTCTTCTGCGGCGA........................2011.001100000
droGri2
TCAATCTATCACATGGCCCATGGCACAACCTTCAATGTGGAACCGGGCACGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:39 PM