ID:

dse_1255

 Coordinate:

scaffold_38:102002-102152 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.8 -9.6

Flybase annnotation

exon [dsec_GLEANR_15863:4]; CDS [Dsec\GM15075-cds]; intron [Dsec\GM15075-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATGTGTGGGGTCCGGCTGGCTCTCGCTCAACTCTTAACCAGCGGCTTTTTAACCAGTTTAAGTTTTCATTTGCGTGAGCACAGACGTGTCCGGAAAGCGAACGGAAGACAAGTGGAACGGAACACGGCCGTATAATCAGAGATCAAACAGAGTAGTGGTGTCGTCACTTGTGCGACTCCCCATAAAAATCCGTCTGCCAGTGCCTTTTGCTTCTTTTTGAGTGCGCGGTTTTCATGTATCGCCGCCGGTA
**********************************************************************((.(((...(((.......((((.........))))......)))..))).))******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
 V115
head
 V113
male body
.................................................................................................GCGAACGGAAGACAAGTGGAACGGAA................................................................................................................................ 26 0 1 2.00 2 0 2 0 0
......................................................................TTGCGTGAGCACAGACGTGTCCG.............................................................................................................................................................. 23 0 1 2.00 2 1 1 0 0
......................................................................TTGCGTGAGTACAGACGTGTCCGGAA........................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0
........................................................................................................GAAGACAAGTGGAACGGAACAC............................................................................................................................. 22 0 1 1.00 1 1 0 0 0
..................................................................................AGACGTGTCCGGAAAGCGA...................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
.................................................................................CAGACGTGTCCGGAAAGCGAACGG.................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
.......................................................................................................GGAAGACAAGTGGAACGGAA................................................................................................................................ 20 0 1 1.00 1 0 1 0 0
..................................................................................AGACGTGTCCGGAAAGCGAAC.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1
....................................................................ATTTGCGTGAGCACAGACG.................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1
..............................................................................GCACAGACGTGTCCGGAAA.......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
......................................................................TTGCGTGAGCACAGACGTG.................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0
..........................................................................GTGAGCACAGACGCGTCCGGAAAGC........................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0
.............................................................................AGCACAGACGTGTCCGGA............................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0
........................................................................TCGTGAGCACAGACGTGTC................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0
..........................................................................GTGAGCACAGACGTGTCCG.............................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0
.........................................................................................................................................CAGAGATCAAACAGAGTAGTGGTGT......................................................................................... 25 0 1 1.00 1 1 0 0 0
.................................................................................................................TGGAACGGAACACGGCCGTA...................................................................................................................... 20 0 1 1.00 1 1 0 0 0
................................................................................ACAGACGTGTCCGGAAAGCGAA..................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
...........................................................................TGAGCACAGACGTGTCCG.............................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0
....................................................................ATTTGCGTGAGCACAGACGTGTCCG.............................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1
................................................................................................AGCGAACGGAAGACAAGTGGAACGG.................................................................................................................................. 25 0 1 1.00 1 0 0 1 0
.......................................................AGTTTAAGTTTTCATTTGCG................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.....................................................................TTTGCGTGAGCACAGACG.................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0
............................................................................................................ACAAGTGGAACGGAACACGGC.......................................................................................................................... 21 0 1 1.00 1 0 0 1 0

Anti-sense strand reads

GTACACACCCCAGGCCGACCGAGAGCGAGTTGAGAATTGGTCGCCGAAAAATTGGTCAAATTCAAAAGTAAACGCACTCGTGTCTGCACAGGCCTTTCGCTTGCCTTCTGTTCACCTTGCCTTGTGCCGGCATATTAGTCTCTAGTTTGTCTCATCACCACAGCAGTGAACACGCTGAGGGGTATTTTTAGGCAGACGGTCACGGAAAACGAAGAAAAACTCACGCGCCAAAAGTACATAGCGGCGGCCAT
********************************************************************************************************************************((.(((...(((.......((((.........))))......)))..))).))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
............................................................................................................................................................................CGCTGAGGGGTATTTTTAGGC.......................................................... 21 0 1 1.00 1 1
...................CGAGAGTGTGTGGAGAATTGG................................................................................................................................................................................................................... 21 3 2 0.50 1 1
.....................................................................................................................TGGATTGTTCCGGCATAT.................................................................................................................... 18 3 20 0.10 2 2
..........................................................................................................................................................................CAGGCTAAGGGGTAGTTTTA............................................................. 20 3 13 0.08 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_38:101952-102202 - dse_1255 CATGTGTGGGG-T-----C-CGGCTGG-CTCTCGCTCAACTCTTAACCAGCGGC-----TTTTTAA--CCAGTTTAAGTTTTCATTTGCGTGAGCACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGAGATCAAA-CAGAGT--AGTGGTGTCGTCACTTG-TG--CGACTCCC--CATAAAAA-------------TCCGT---CTGCCAGTG-----------C--------CT------------------------TTTG------------------------------------------------------------C-TT--------------------------------------------CTTTTTGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTA
droSim2 3r:4279933-4280182 - CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTCAACTCTTAACCAGTGGC-----TTTTTAA--CCAGTTTAAGTTTTCATTTGCGTGAGCACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGAGATCAAA-CAGAGT--AGTGGTGTCGTCACTTT-TG--CGACTTCC--CATAA-AA-------------ACCGT---CTGCCAGTG-----------C--------TT------------------------ATTG------------------------------------------------------------C-TT--------------------------------------------CTTTTCGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTA
dm3 chr3R:17030597-17030847 + CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTAAACTCTTAACCAGTGGC-----TTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGAAATCAAA-CAGAGT--AGTGGTGTCGTCACTTT-TG--CGACTCTC--CATAAAAA-------------TCCGT---CTGCCAGTG-----------C--------TT------------------------GTTG------------------------------------------------------------C-TT--------------------------------------------CTTCTTGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTA
droEre2 scaffold_4770:4630256-4630517 - der_539 CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTAAACTCTTAACCAGTGGC----TTTTTTAA--CCAGTTTAAGTTTATATTTGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAAGTGAAACAAAACGAA-----ACG-----GAACGG---A---------ACACGGC----------------C--------------------------------GTA-----T-------------CAGCAATCAGG-CAGAGT--AGTGGTGTCGTCACTTT-TG--CGACTCTC--AATA--AA-------------TCCGT---CTCCCAGTG-----------C--------TT------------------------GTTG------------------------------------------------------------C-TT--------------------------------------------CTTTTTGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTA
droYak3 3R:5815386-5815650 + CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTAAACTCTTAACCAGTGGC----TTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAAGTGAAACAGAACGAA-----ACG-----GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGATATCAAA-CAGAAA--AGTAGTGTCGTCACTTT-TG--CGACTCTC--AAAA--AA-------------TCCGT---CGGCCACTG-----------T--------CT------------------------GTTG------------------------------------------------------------C-TT--------------------------------------------CTTTTCGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGCTA
droEug1 scf7180000409542:105743-106002 - CATGTGTGGGG-C-----T-CGATTGGCCGCTCGCGAATCTCTTAACCATAGGCGTT-TTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CG-----AAC---------------------------------------------------------------------------------------GGAAGCCAA----------GTGAA-----AC-GAAAC----GG---A---------ACACGGC----------------C--------------------------------GTATATAAT-------------CGGGGATCCAA-CAGCGT--AGTGGTGTCGTCATATTGTT--CGGCTCTTGTGATA--AATC-----------GCCAT---CTGATCGAG-----------G--------CA------------------------A---------------------------------------------------------------------------------------------------------------TTCTTTGAGTG----CGGG-------------CT-TTTCATGTATCGCCGTCGTTA
droBia1 scf7180000302155:399329-399615 + CATGTGTGTGGGTT----T-GGACTGG-GGCTCGCGAAACTCTTAACCAGTGGCGT--TTTTTTAA--CCAGTTTA-TTTTACATTTGCGTGAGCGCGGAC---GTGTCCGGAAAA-CG-----AGC---------------------------------------------------------------------------------------GGAAACCAA----------GTGAA-----AC-CGAAC----GG---A---------ACACGGC----------------CGTAGAATAGTGTGTTGGTACAATCGTACGTTCGTA--CAGT-------------CGGAGATCCAA-CG---G--AGTGGTGTCGTCACTTC-TGGGTGGCTCTT--GACA--AA-------------TCCGTAGTCGGTCAGCT-----------T--------TT---------------------------G------------------------------------------------------------T-T----------------------------------------------TCTTCGAGTG----CGGG-------------CT-TTTCATGTATCGCCGTCGCTA
droTak1 scf7180000415417:341041-341306 - CATGTGTGTGGGTTTGGATTCGCTCGG-GGCTCGCAAAACTCTTAACCAGTGGCGTT-TTTTTTAA--CCAGTTTTATTTTTCATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CGAG-CGAAC---------------------------------------------------------------------------------------GGAAACCCA----------GTGAATCG----------GAACGGAAGA---------ACACGGC----------------C--------------------------------GTA--CAATCCA-----------AAAGATCCAA-CG---G--AGGGGTGTCGTCATTTCTTG--TGGCTCTT--GATA--AA-------------TCCGT---CCGCCAGTG-----------C--------TT------------------------TT---------------------------------------------------------------------------------------------------------------TCCTCGAGTG----CGGG-------------CT-TTTCATGTATCGCCGTCGCTA
droEle1 scf7180000491080:904873-905131 + CATGTGTGGGG-A-----T-T-------CGTTCGCAAAACTCTTAACCACTGGCGTTTTTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CGAGCCGAAC------GGA---------------------------------------------------------------------------AGC-GAAGCAAA----------GTGAAGCGGAAC-GAAAC----GG---A---------ACACGGC----------------C--------------------------------GTA--TAGT-------------CGGGGATCCAA-CG---A--AGTGGTGTCATCATTTT-TT--CGGCTCTT--GATA--AA-------------TCCGT---TTGTCAGTG-----------T--------TT------------------------AT---------------------------------------------------------------------------------------------------------------TCTTCGAGAG----TGGG-------------TT-TTTCATGTATCGCCGTCGCTA
droRho1 scf7180000779250:194263-194533 - CATGTGTGGGGGT-----T-CATTTGG-CGCTCGCGAAACTCTTAACCACTGGCGT--TTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CGAGACAAAC------GCG----------------------------------------------------------------------GTCGGAACGGAAGCA-----GAGCGAAGTGAA-----AC-GGAAC----GG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CGGGGATCCAA-CA---G--TGTGGTGTCGTCATTTTTTT--CGGCTCTT--GATA--AA-------------TCCGT---TTGTCAGTG-----------T--------TT------------------------A---------------------------------------------------------------------------------------------------------------CTCTCCGAGTG----CGGG-------------AT-TTTCATGTATCGCCGCCGCTA
droFic1 scf7180000454096:307418-307686 + CATGTG---GG-T-----T-CGATTGG-CGCTCGCGAAACTCTTAACCAGTGGGATT-TTTTTTAA--CCATTTTGAGTTTACATTTGCGTGAGCGCAGAC---GTGCCCGGAAAG-CGACCAAAAC------GTA----------------------------------------------------------------------GCCGAAACGGAAACGAA----------GTGAG-----AC-GGAAC----GG---A---------ATACGGC----------------C--------------------------------GTA--TAAT-------------CGGGGATCCAA-CAACGG--AGTGGTTTCGTCACTTT-T---CGGCTCTT--GATA--AA-------------TCCGT---CAGCCAGTG-----------T--------TT------------------------TTTG------------------------------------------------------------AGT----------------------------------------------TCTTCGAGTG----CGAG-------------TT-TTACATGTATCGCCGTCGCTA
droKik1 scf7180000302690:225812-226058 - CATGTGTGGGG-C-----T-GCGTTGG-GTCTCGCGAAACTTT--------------------TAA--CCAGTTTAAGTTTACATTCGGGTGATCGCAGAC---GTGCCCTGGTGA----A-AAAAT-----------CGGAACCATC-----------------------------------------GGCAAACACAAAGCGCAGCGGAAAC-GAAGAA-----AAGAACAGTGGA-----AC-GGAAC----GG---A---------GC----------------------------------------------------------------------------CTGGGAGGCAG-TGGAGTAAAGTCGTGTCGTCATT------------GTT--GATA--GA-------------TCCGT---ACGACTGTG-----------T-------------------------------------------------------------------------------------------------------------------ATA----G-------------------------------GTGCCTC--T--------------GT-GTTGATGTATCGCCGCCGCTA
droAna3 scaffold_12911:2281511-2281827 + CATGTGTGGGG-T-----T-TCGCTGG-CACTCGCGAACCCC---ACCAGTGCT----C-G-GTGGGTAGATTTTGATTTGAAACCTCTCCGCGTTCGGAC---GTGCCCGGAAAAGTGAA-AGAAC---------------------------------------------------------------------------------------GGAAACG------------------------------GAGCGG---AACGTGTGTAACACAGC----------CAGCCACTCAGCC--------------------------GAACGTAAT-------------CTGGGAGCCATTCG---G--AGTCGTTTCGTCACTTA--G--TGCTTCTT--GAAA--AG-------------TCCGT---CTGCGAGTG-GGCCTAAGGCTGAGTGCGCTTCTTCTTTGCCTTTC--TGCGCG----------------GTGTGAGAGT--------------------------------------------------G---TGCA----TCTGTGT-------------------------CAGTGCCAGTGC--------------GT-GTCCATGTACCGACGTCGCTA
droBip1 scf7180000396714:798865-799175 - CATGTGTGGGG-T-----T-TCGCTGG-CACTCGCGAACC---CAACAAGTGCT----C-G-ATGGCTCGATTTTGATTTGAAACCTCTCCGCGTTCGGAC---GTGCCCGGAAAAGTGAA-AGAAC---------------------------------------------------------------------------------------GGAAACGGA----------GCG---------------GAACGT---A-----TGTTACACAGC----------------C--------------------------------GAACGTAAT-------------CGGGGAGCCATTCG---G--AGTCGTTTCGTCACTTC-TG----CTTCTT--GATA--AA-------------TCCGC---CTGCCAGTTGGGC-------CAAGTGCGCTTCTTCT-TACCTTTC--TACACG----------------GTGCGAGAGTGGTGTGTGGGT-------------------GCA-----------------G---TGCA----TCTGTGC-------------------------TAGTGTCTGTGC--------------GT-GTCCATGTACCGACGTCGCTA
dp5 2:25496628-25496882 - TGTTTGTGGCG-A-----T-C-GTGGG-GGCTCGCGAAACTCTT--------------------AA--CCAGTTTACTTTTTCACTTGCGAGCGCGCAGACCGTGTGCCCGGAACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------CATCGCATA---ATCTTCGCCACCGC----------CACCGCCGCAGCAGA-----------------------------------------------------------------------------------------GCTTTCT--GATA--AA-------------TCCGT---CTGCGATTT-----------CGCGTCCTCTTCTTCTTTGTCTTTCATTACACGC-----------------------------------------------GTGTG-------CGTGTGC-GTGTTCGTGTGC---ATA----G-------------------------------GTATTGG--T--------------GTGCTCCATGTATCGCCGTCGCTA
droPer2 scaffold_6:824699-824947 - TGTTTGTGGCG-A-----T-C-GTGGG-GGCTCGCGAAACTCTT--------------------AA--CCAGTTTACTTTTTCACTTGCGAGCGCGCAGACCGTGTGCCCGGAACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------CATCGCATA---ATCTTCGCCACCGC----------------CGCAGCAGA-----------------------------------------------------------------------------------------GCTTTCT--GATA--AA-------------TCCGT---CTGCGATTT-----------CGCGTCCTCTTCTTCTTTGTCTTTCATTACACGC-----------------------------------------------GTGTG-------CGTGTGC-GTGTTCGTGTGC---ATA----G-------------------------------GTATTGG--T--------------GTGCTCCATGTATCGCCGTCGCTA
droWil2 scf2_1100000004943:15996039-15996310 + TC------------------------------------------------------------TTAA--CCAGTTTAAGTTTACATTTGCAAGCGCGCAGAC---GTGCCCGGAACA-GG-----AAAGCTAGCGTAAAGAGAACTGCAAAAAAATACATAAATAAGTTTTAGAGAAAAAAATT-------------------------------------------AAAAA----------------------------------------------------------------------------------------------------TAATAAAAAAAAATAAAGCAAGAGGCA-------------------------------------------ACA--AATCGCGCTCTGATAACTGT---TTGCGCGTA-----------------ATTCTTTATTACGTCT-TCATCATCTACG-----------T-AAA-----------------GTGAAGTGT-----TGTGGGTGGTGTGTGTGT-----------------------------------------------GTGTTTGAGTG----TGT--------------GT-GTACATGTATCGTCGTCGGTA
droVir3 scaffold_13047:4392858-4393116 - CA------------------------A-CGCTCAACAAACTGTT--------------------AA--CCAGTTTACGTTTACATTTGGGAGCGCGCAGAC---GTGCCCGGAACCGAG-----AAT--------------------------------------------------------------AGCAAAC------------------AGAAA------------------------------------AG---G---------CAACGGTCGCTTGCGAA-------------------------------------------------------------TTTTCCAACAT-CTACGC--ATTGTTTCCAT-------------------------------------------------------------------------------------------------TACA-------------------AGCGAGAGCGT-TTATCAGTGCA-TGC----GTGAG-------CTTGTGC-GTGTGTGTGTGT---GTGTGTGTGTGTG--------AATACCAAATATATTTAAGTG----CGCGTGTGTTTGTGTATTT-GTACATGTATCGCCGTCGCTA
droMoj3 scaffold_6540:21975585-21975831 + CA------------------------A-CGCTCAACAAACTGTT--------------------AA--CCAGTTTACGTTTACATTTGGGAGCGCGCAGAC---GTGCCCGGAACCGTG-----AAT--------------------------------------------------------------AGCAAAC------------------GCAAA--------------AAG----------------------------------CAACGCTCGCTTGCAAA---------------------------------------------------------------------------------------------------------TTTTCC--AATA--TA-------------TACGC---ATAT-----------------------------------------------------CGTTTCCTTAGCACGCGAGCGTGTTTTATCAGTGCAGTGCGTGAGTGTA-------GGTGAGA-GTGTTC-------------------------------TTAGTGAAATTATTGCAGTG----CGCGTGTATTTGTGTATTT-GCACATGTATCGTCGTCGCTA
droGri2 scaffold_14906:9876603-9876868 - T--------------------------------------------------------------TAA--CCAGTTTACGTTTACATTTGGGAGCGCGCAGAC---GTGCCCGGAACAGAGAA-ACAAC------AAA-------------------------------------------CGTTGAGAATAGCAAAC------------------A------------------------------------GAAAAG---C---------CAACGGCCGCTTGCAAA-------------------------------------------------------------TTTTTCATCAT-CTACGC--ATTGTTGCCAT------------------------------------------TACAC---ACGCCAGTG-----------T--------TT------------------------AT-----------------------------CAGTGCA-TGC----GTGTG-------TGTGTGC-GTGTGTATGTGC---GTATATATGTATATACATATATATGCTATATATAGTTTAGTG----TGTGTGTGT-TGTGTATTT-ACACATGTATCGCCGTCGCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CATGTGTGGGG-T-----C-CGGCTGG-CTCTCGCTCAACTCTTAACCAGCGGC-----TTTTTAA--CCAGTTTAAGTTTTCATTTGCGTGAGCACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGAGATCAAA-CAGAGT--AGTGGTGTCGTCACTTG-TG--CGACTCCC--CATAAAAA-------------TCCGT---CTGCCAGTG-----------C--------CT------------------------TTTG------------------------------------------------------------C-TT--------------------------------------------CTTTTTGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................G-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------A.............................................................................................................................................................................................................................................................................................................................................................................................2612.0022000
.....................................................................................TTGCGTGAGCACAGAC---GTGTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021010
.......................................................................................................................................................................................................................GAAGACAA----------GTG---------------GAACGG---A---------ACAC..........................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................AGAC---GTGTCCGGAAAG-CG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................CAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......................................................................................................................................................................................................................GGAAGACAA----------GTG---------------GAACGG---A---------A.............................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.................................................................................................AGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................ATTTGCGTGAGCACAGAC---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.............................................................................................GCACAGAC---GTGTCCGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................TTGCGTGAGCACAGAC---GTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
............................................................................................AGCACAGAC---GTGTCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.........................................................................................GTGAGCACAGAC---GTGTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
............................................................................................................................................................................................................................................................................................................................................................CAGAGATCAAA-CAGAGT--AGTGGTGT....................................................................................................................................................................................................................................................................................2511.0010010
..........................................................................................................................................................................................................................................TG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--.................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................................................................................ACAGAC---GTGTCCGGAAAG-CG-----AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..........................................................................................TGAGCACAGAC---GTGTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...................................................................................ATTTGCGTGAGCACAGAC---GTGTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..................................................................................................................AG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
......................................................................AGTTTAAGTTTTCATTTGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................................TTTGCGTGAGCACAGAC---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...........................................................................................................................................................................................................................ACAA----------GTG---------------GAACGG---A---------ACACGGC----------------.......................................................................................................................................................................................................................................................................................................................................................................2111.0010001
droSim2
CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTCAACTCTTAACCAGTGGC-----TTTTTAA--CCAGTTTAAGTTTTCATTTGCGTGAGCACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGAGATCAAA-CAGAGT--AGTGGTGTCGTCACTTT-TG--CGACTTCC--CATAA-AA-------------ACCGT---CTGCCAGTG-----------C--------TT------------------------ATTG------------------------------------------------------------C-TT--------------------------------------------CTTTTCGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACG............................................................................................................................................................................................................................................................................................................................................................................................................2212.00211000000000000000
.............................................................................................GCACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201100000000000000
............................................................................................AGCACAGAC---GTGTCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00201000000001000000
.......................................................................................................................................................................................................................GAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------G.....................................................................................................................................................................................................................................................................................................................................2712.00200000000001010000
..................................................................................................................AG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAAC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.......................................................................................................................................................................................................................GAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GT....................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...........................................................................................................................................................................................................................ACAA----------GTG---------------GAACGG---A---------ACAC..........................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..................................................................................................GAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
............................................................................................AGCACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------GT-TTTCATGTATCGCCGCCG...2111.00100010000000000000
..........................................................................................................................................................................................................................................TG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGA............................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...........................................................................................................TCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GA...............................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.............................................................................................................CGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAA..............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CATAA-AA-------------ACCGT---CTGCCAGT.......................................................................................................................................................................................................................2011.00101000000000000000
.............................................................................................GCACAGAC---GTGTCCGGAAAG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........................................................................................................................................................................................................................AAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--.................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...............................................................................................ACAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...................................................................................................AC---GTGTCCGGAAAG-CG-----AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................AT-------------CAGAGATCAAA-CAGAGT--AGTGGTGT....................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................GAGCACAGAC---GTGTCCGGAAAG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..........................................................................................................GTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GT.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..........................................................................................................GTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...................................................................................ATTTGCGTGAGCACAGAC---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...........................................................................................................TCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
........................................................................................................................................................................................................................AAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------G.....................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................GTA--TAAT-------------CAGAGATCAAA-C...................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...................................................................................................AC---GTGTCCGGAAAG-CG-----TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.....................................................................................................................CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAAC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
......................................................................................................................................................................................................................GGAAGACAA----------GTG---------------GAACGG---A---------ACAC..........................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
dm3
CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTAAACTCTTAACCAGTGGC-----TTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGAAATCAAA-CAGAGT--AGTGGTGTCGTCACTTT-TG--CGACTCTC--CATAAAAA-------------TCCGT---CTGCCAGTG-----------C--------TT------------------------GTTG------------------------------------------------------------C-TT--------------------------------------------CTTCTTGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..................................................................................................................AG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------G..................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CGCAGAC---GTGTCCGGAAAG-CG-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------G................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................C---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................GAAGACAA----------GTG---------------GAACGG---A---------ACACG.........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CGCAGAC---GTGTCCGGAAAG-CG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................................................................................................................................................................................................................CAA----------GTG---------------GAACGG---A---------ACACGG........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AGAAATCAAA-CAGAGT--AGTGGT......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................G-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------GAACGG---A---------AC............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGACAA----------GTG---------------ATC..............................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTAAACTCTTAACCAGTGGC----TTTTTTAA--CCAGTTTAAGTTTATATTTGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAAGTGAAACAAAACGAA-----ACG-----GAACGG---A---------ACACGGC----------------C--------------------------------GTA-----T-------------CAGCAATCAGG-CAGAGT--AGTGGTGTCGTCACTTT-TG--CGACTCTC--AATA--AA-------------TCCGT---CTCCCAGTG-----------C--------TT------------------------GTTG------------------------------------------------------------C-TT--------------------------------------------CTTTTTGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................CAGCAATCAGG-CAGAGT--AGT.........................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................AGCGCAGAC---GTGTCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...................................................................................ATTTGCGTGAGCGCAGAC---GTGTCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.........................................................................................GTGAGCGCAGAC---GTGTCCGGAAAG-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................AAAACGAA-----ACG-----GAACGG---A---------ACACGGC----------------C--------------------------------......................................................................................................................................................................................................................................................................................................................................2611.0011000000
......................................................................................TGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000100
.................................................................................................AGAC---GTGTCCGGAAAG-CG-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
............T-----C-CGGCTGG-CGCTCGCTAAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...............................................................................................GCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000
.........................................................................................................................................................................................................................................................................................................................................................................AGAGT--AGTGGTGTCGTCACTTT-TG--CG....................................................................................................................................................................................................................................................................2611.0010000100
............................................................................................AGCGCAGAC---GTGTCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
CATGTGTGGGG-T-----C-CGGCTGG-CGCTCGCTAAACTCTTAACCAGTGGC----TTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAAGTGAAACAGAACGAA-----ACG-----GAACGG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CAGATATCAAA-CAGAAA--AGTAGTGTCGTCACTTT-TG--CGACTCTC--AAAA--AA-------------TCCGT---CGGCCACTG-----------T--------CT------------------------GTTG------------------------------------------------------------C-TT--------------------------------------------CTTTTCGAGTG----CGCG-------------GT-TTTCATGTATCGCCGCCGCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................GATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2314.00400000040000
............................................................................................................................................................................................................................................................................................................................................AAT-------------CAGATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2813.00300000030000
.................................................................................................................................................................................................................................................................................................................................................................ATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2012.00201000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------TCCGT---CGGCCACTG-----------T--------CT------------------------GTTG------------------------------------------------------------C-T.....................................................................................................2512.00200000000002
................................................................................................................................................................................................................................................................................................................................................................TATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2112.00201000010000
.............................................................................................GCGCAGAC---GTGTCCGGAAAG-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...........................................................................................................TCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................GAA-----ACG-----GAACGG---A---------ACACGGC----------------.......................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................ATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................CGCAGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTCATGTATCGCCGCC....1811.00110000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................A--AA-------------TCCGT---CGGCCACTG-----------T--------CT------------------------GTTG------------------------------------------------------------........................................................................................................2411.00110000000000
............................................................................................AGCGCAGAC---GTGTCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.................................................................................................................................................................................................................................GAAACAGAACGAA-----ACG-----GAA..............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................................................................................................................................................................................................................................................................................................................................AAT-------------CAGATATCAAA-CAGAAA--AGT.........................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................TAAT-------------CAGATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................AGTAGTGTCGTCACTTT-TG--CGA...................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................GATATCAAA-CAGAAA--AGTAGT......................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................C---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................GGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGATAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................AT-------------CAGATATCAAA-CAGAAA--AGT.........................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................AGATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2411.00100000010000
........................................................................................................................................................................................................................................................................................................................................A--TAAT-------------CAGATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................3011.00100000010000
.............................................................................GTTTACATTTGCGTGAGCGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................GATATCAAA-CAGAAA--AGTAGTGTC...................................................................................................................................................................................................................................................................................2411.00100000010000
.............................................................................GTTTACATTTGCGTGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................................................GTGAGCGCAGAC---GTGTCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................................................................................................................................................................................................................................................................................................................................CAGATATCAAA-CAGAAA--AGTAGTGT....................................................................................................................................................................................................................................................................................2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................CAGAAA--AGTAGTGTCGTCACTTT-TG--C.....................................................................................................................................................................................................................................................................2611.00100000010000
................................................................................................................................................................................................................................TGAAACAGAACGAA-----ACG-----GAAC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................GAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......GGGG-T-----C-CGGCTGG-CGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.................................................................................................AGAC---GTGTCCGGAAAG-CG-----AAC---------------------------------------------------------------------------------------GGAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................A-------------TCCGT---CGGCCACTG-----------T--------CT------------------------GTT.....................................................................................................................................................................2111.00100000010000
......................................................................................TGCGTGAGCGCAGAC---GTGTCCGGAAAG-C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
...................................................................................................................................................................................................................................AACAGAACGAA-----ACG-----GAAC.............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
droEug1
CATGTGTGGGG-C-----T-CGATTGGCCGCTCGCGAATCTCTTAACCATAGGCGTT-TTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CG-----AAC---------------------------------------------------------------------------------------GGAAGCCAA----------GTGAA-----AC-GAAAC----GG---A---------ACACGGC----------------C--------------------------------GTATATAAT-------------CGGGGATCCAA-CAGCGT--AGTGGTGTCGTCATATTGTT--CGGCTCTTGTGATA--AATC-----------GCCAT---CTGATCGAG-----------G--------CA------------------------A---------------------------------------------------------------------------------------------------------------TTCTTTGAGTG----CGGG-------------CT-TTTCATGTATCGCCGTCGTTASizeHit CountTotal NormTotal
No Reads
droBia1
CATGTGTGTGGGTT----T-GGACTGG-GGCTCGCGAAACTCTTAACCAGTGGCGT--TTTTTTAA--CCAGTTTA-TTTTACATTTGCGTGAGCGCGGAC---GTGTCCGGAAAA-CG-----AGC---------------------------------------------------------------------------------------GGAAACCAA----------GTGAA-----AC-CGAAC----GG---A---------ACACGGC----------------CGTAGAATAGTGTGTTGGTACAATCGTACGTTCGTA--CAGT-------------CGGAGATCCAA-CG---G--AGTGGTGTCGTCACTTC-TGGGTGGCTCTT--GACA--AA-------------TCCGTAGTCGGTCAGCT-----------T--------TT---------------------------G------------------------------------------------------------T-T----------------------------------------------TCTTCGAGTG----CGGG-------------CT-TTTCATGTATCGCCGTCGCTASizeHit CountTotal NormTotal
No Reads
droTak1
CATGTGTGTGGGTTTGGATTCGCTCGG-GGCTCGCAAAACTCTTAACCAGTGGCGTT-TTTTTTAA--CCAGTTTTATTTTTCATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CGAG-CGAAC---------------------------------------------------------------------------------------GGAAACCCA----------GTGAATCG----------GAACGGAAGA---------ACACGGC----------------C--------------------------------GTA--CAATCCA-----------AAAGATCCAA-CG---G--AGGGGTGTCGTCATTTCTTG--TGGCTCTT--GATA--AA-------------TCCGT---CCGCCAGTG-----------C--------TT------------------------TT---------------------------------------------------------------------------------------------------------------TCCTCGAGTG----CGGG-------------CT-TTTCATGTATCGCCGTCGCTASizeHit CountTotal NormTotal
No Reads
droEle1
CATGTGTGGGG-A-----T-T-------CGTTCGCAAAACTCTTAACCACTGGCGTTTTTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CGAGCCGAAC------GGA---------------------------------------------------------------------------AGC-GAAGCAAA----------GTGAAGCGGAAC-GAAAC----GG---A---------ACACGGC----------------C--------------------------------GTA--TAGT-------------CGGGGATCCAA-CG---A--AGTGGTGTCATCATTTT-TT--CGGCTCTT--GATA--AA-------------TCCGT---TTGTCAGTG-----------T--------TT------------------------AT---------------------------------------------------------------------------------------------------------------TCTTCGAGAG----TGGG-------------TT-TTTCATGTATCGCCGTCGCTASizeHit CountTotal NormTotal
No Reads
droRho1
CATGTGTGGGGGT-----T-CATTTGG-CGCTCGCGAAACTCTTAACCACTGGCGT--TTTTTTAA--CCAGTTTAAGTTTACATTTGCGTGAGCGCAGAC---GTGTCCGGAAAA-CGAGACAAAC------GCG----------------------------------------------------------------------GTCGGAACGGAAGCA-----GAGCGAAGTGAA-----AC-GGAAC----GG---A---------ACACGGC----------------C--------------------------------GTA--TAAT-------------CGGGGATCCAA-CA---G--TGTGGTGTCGTCATTTTTTT--CGGCTCTT--GATA--AA-------------TCCGT---TTGTCAGTG-----------T--------TT------------------------A---------------------------------------------------------------------------------------------------------------CTCTCCGAGTG----CGGG-------------AT-TTTCATGTATCGCCGCCGCTASizeHit CountTotal NormTotal
No Reads
droFic1
CATGTG---GG-T-----T-CGATTGG-CGCTCGCGAAACTCTTAACCAGTGGGATT-TTTTTTAA--CCATTTTGAGTTTACATTTGCGTGAGCGCAGAC---GTGCCCGGAAAG-CGACCAAAAC------GTA----------------------------------------------------------------------GCCGAAACGGAAACGAA----------GTGAG-----AC-GGAAC----GG---A---------ATACGGC----------------C--------------------------------GTA--TAAT-------------CGGGGATCCAA-CAACGG--AGTGGTTTCGTCACTTT-T---CGGCTCTT--GATA--AA-------------TCCGT---CAGCCAGTG-----------T--------TT------------------------TTTG------------------------------------------------------------AGT----------------------------------------------TCTTCGAGTG----CGAG-------------TT-TTACATGTATCGCCGTCGCTASizeHit CountTotal NormTotal
No Reads
droKik1
CATGTGTGGGG-C-----T-GCGTTGG-GTCTCGCGAAACTTT--------------------TAA--CCAGTTTAAGTTTACATTCGGGTGATCGCAGAC---GTGCCCTGGTGA----A-AAAAT-----------CGGAACCATC-----------------------------------------GGCAAACACAAAGCGCAGCGGAAAC-GAAGAA-----AAGAACAGTGGA-----AC-GGAAC----GG---A---------GC----------------------------------------------------------------------------CTGGGAGGCAG-TGGAGTAAAGTCGTGTCGTCATT------------GTT--GATA--GA-------------TCCGT---ACGACTGTG-----------T-------------------------------------------------------------------------------------------------------------------ATA----G-------------------------------GTGCCTC--T--------------GT-GTTGATGTATCGCCGCCGCTASizeHit CountTotal NormTotal
No Reads
droAna3
CATGTGTGGGG-T-----T-TCGCTGG-CACTCGCGAACCCC---ACCAGTGCT----C-G-GTGGGTAGATTTTGATTTGAAACCTCTCCGCGTTCGGAC---GTGCCCGGAAAAGTGAA-AGAAC---------------------------------------------------------------------------------------GGAAACG------------------------------GAGCGG---AACGTGTGTAACACAGC----------CAGCCACTCAGCC--------------------------GAACGTAAT-------------CTGGGAGCCATTCG---G--AGTCGTTTCGTCACTTA--G--TGCTTCTT--GAAA--AG-------------TCCGT---CTGCGAGTG-GGCCTAAGGCTGAGTGCGCTTCTTCTTTGCCTTTC--TGCGCG----------------GTGTGAGAGT--------------------------------------------------G---TGCA----TCTGTGT-------------------------CAGTGCCAGTGC--------------GT-GTCCATGTACCGACGTCGCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................GAC---GTGCCCGGAAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003000003
...........................................................................................................................GAAC---------------------------------------------------------------------------------------GGAAACG------------------------------GAGCGG---AACG....................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCCTTTC--TGCGCG----------------GTGTGA....................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................AACACAGC----------CAGCCACTCAGCC--------------------------GAAC..................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................GGAGCCATTCG---G--AGTCGTTTCG..................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCCTTTC--TGCGCG----------------GT........................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................................CGTAAT-------------CTGGGAGCCATTCG---G--A...........................................................................................................................................................................................................................................................................................2211.001000010
...................................................................................ACCTCTCCGCGTTCGGAC---GTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................GTGCCCGGAAAAGTGAA-AGAAC---------------------------------------------------------------------------------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTG-GGCCTAAGGCTGAGTGC....................................................................................................................................................................................................2211.001100000
...........................................................................................................................................................................................................................................................................................................C--------------------------GAACGTAAT-------------CTGGGAGCCATTC...................................................................................................................................................................................................................................................................................................2311.001000010
.......................................................................................CTCCGCGTTCGGAC---GTGCCCGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................TCTCCGCGTTCGGAC---GTGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................AAACG------------------------------GAGCGG---AACGTGTGTAACAC..........................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...........................................................................................................................GAAC---------------------------------------------------------------------------------------GGAAACG------------------------------GAGCGG---AA......................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------------------CAGTGCCAGTGC--------------GT-GTC..................1911.001000010
droBip1
CATGTGTGGGG-T-----T-TCGCTGG-CACTCGCGAACC---CAACAAGTGCT----C-G-ATGGCTCGATTTTGATTTGAAACCTCTCCGCGTTCGGAC---GTGCCCGGAAAAGTGAA-AGAAC---------------------------------------------------------------------------------------GGAAACGGA----------GCG---------------GAACGT---A-----TGTTACACAGC----------------C--------------------------------GAACGTAAT-------------CGGGGAGCCATTCG---G--AGTCGTTTCGTCACTTC-TG----CTTCTT--GATA--AA-------------TCCGC---CTGCCAGTTGGGC-------CAAGTGCGCTTCTTCT-TACCTTTC--TACACG----------------GTGCGAGAGTGGTGTGTGGGT-------------------GCA-----------------G---TGCA----TCTGTGC-------------------------TAGTGTCTGTGC--------------GT-GTCCATGTACCGACGTCGCTASizeHit CountTotal NormTotal
No Reads
dp5
TGTTTGTGGCG-A-----T-C-GTGGG-GGCTCGCGAAACTCTT--------------------AA--CCAGTTTACTTTTTCACTTGCGAGCGCGCAGACCGTGTGCCCGGAACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------CATCGCATA---ATCTTCGCCACCGC----------CACCGCCGCAGCAGA-----------------------------------------------------------------------------------------GCTTTCT--GATA--AA-------------TCCGT---CTGCGATTT-----------CGCGTCCTCTTCTTCTTTGTCTTTCATTACACGC-----------------------------------------------GTGTG-------CGTGTGC-GTGTTCGTGTGC---ATA----G-------------------------------GTATTGG--T--------------GTGCTCCATGTATCGCCGTCGCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................CACTTGCGAGCGCGCAGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020100100000
....................................................................................................CCGTGTGCCCGGAACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020020000000
.......................................................................................GCGAGCGCGCAGACCGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................CTTCGCCACCGC----------CACCGCCGC....................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
.......................................................................................GCGAGCGCGCAGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................AACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------CATC.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................TTCACTTGCGAGCGCGCAGACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGC---ATA----G-------------------------------GTATTGG--T--------------GT......................2111.0010100000000
...................................................................................................ACCGTGTGCCCGGAACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
..................................................................................CACTTGCGAGCGCGCAGACCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.....................................................................................TTGCGAGCGCGCAGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................AGACCGTGTGCCCGGAACC--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...................................................................................ACTTGCGAGCGCGCAGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
TGTTTGTGGCG-A-----T-C-GTGGG-GGCTCGCGAAACTCTT--------------------AA--CCAGTTTACTTTTTCACTTGCGAGCGCGCAGACCGTGTGCCCGGAACC--G-----AAC---------------------------------------------------------------------------------------CGAATCG------------------------------CATCGCATA---ATCTTCGCCACCGC----------------CGCAGCAGA-----------------------------------------------------------------------------------------GCTTTCT--GATA--AA-------------TCCGT---CTGCGATTT-----------CGCGTCCTCTTCTTCTTTGTCTTTCATTACACGC-----------------------------------------------GTGTG-------CGTGTGC-GTGTTCGTGTGC---ATA----G-------------------------------GTATTGG--T--------------GTGCTCCATGTATCGCCGTCGCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................ACCGTGTGCCCGGAACC--G-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002010010
...................................................................................................ACCGTGTGCCCGGAACC--G-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.......................................................................................GCGAGCGCGCAGACCGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGTGC---ATA----G-------------------------------GTATTGG--T--------------GT......................2411.001010000
..............................................................................TTTTCACTTGCGAGCGCGCAGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATGTATCGCCGTCGCT.2111.001100000
................................CGCGAAACTCTT--------------------AA--CCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................AGCGCGCAGACCGTGTGCCCGGAACC--G-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................GCGAGCGCGCAGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----------------------------------------------GTGTG-------CGTGTGC-GTGTTCGTGTGC---.......................................................................................2611.001000001
.........................................................................TTACTTTTTCACTTGCGAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
TC------------------------------------------------------------TTAA--CCAGTTTAAGTTTACATTTGCAAGCGCGCAGAC---GTGCCCGGAACA-GG-----AAAGCTAGCGTAAAGAGAACTGCAAAAAAATACATAAATAAGTTTTAGAGAAAAAAATT-------------------------------------------AAAAA----------------------------------------------------------------------------------------------------TAATAAAAAAAAATAAAGCAAGAGGCA-------------------------------------------ACA--AATCGCGCTCTGATAACTGT---TTGCGCGTA-----------------ATTCTTTATTACGTCT-TCATCATCTACG-----------T-AAA-----------------GTGAAGTGT-----TGTGGGTGGTGTGTGTGT-----------------------------------------------GTGTTTGAGTG----TGT--------------GT-GTACATGTATCGTCGTCGGTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................TTTGCAAGCGCGCAGAC---GTGCCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.............................................................................................................................AAGCTAGCGTAAAGAGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
....................................................................................................C---GTGCCCGGAACA-GG-----AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------T-AAA-----------------GTGAAGTGT-----TGTGGGTGGT...............................................................................................................2411.00100100
...........................................................................................................CCCGGAACA-GG-----AAAGCTAGCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
..............................................................................................................GGAACA-GG-----AAAGCTAGCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..............................................................................TTTACATTTGCAAGCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
........................................................................................................GTGCCCGGAACA-GG-----AAAGCTAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................................................................................AC---GTGCCCGGAACA-GG-----AAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----TGTGGGTGGTGTGTGTGT-----------------------------------------------GTG.....................................................2311.00100010
.............................................................................GTTTACATTTGCAAGCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT-----------------------------------------------GTGTTTGAGTG----TGT--------------G.......................21200.05100100
droVir3
CA------------------------A-CGCTCAACAAACTGTT--------------------AA--CCAGTTTACGTTTACATTTGGGAGCGCGCAGAC---GTGCCCGGAACCGAG-----AAT--------------------------------------------------------------AGCAAAC------------------AGAAA------------------------------------AG---G---------CAACGGTCGCTTGCGAA-------------------------------------------------------------TTTTCCAACAT-CTACGC--ATTGTTTCCAT-------------------------------------------------------------------------------------------------TACA-------------------AGCGAGAGCGT-TTATCAGTGCA-TGC----GTGAG-------CTTGTGC-GTGTGTGTGTGT---GTGTGTGTGTGTG--------AATACCAAATATATTTAAGTG----CGCGTGTGTTTGTGTATTT-GTACATGTATCGCCGTCGCTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................TTCCAACAT-CTACGC--ATTGTTTC....................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GAA-------------------------------------------------------------TTTTCCAACAT-CTACGC--ATTG........................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................GCGCGCAGAC---GTGCCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
................................................................AA--CCAGTTTACGTTTACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................T--------------------------------------------------------------AGCAAAC------------------AGAAA------------------------------------AG---G---------CAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................AC------------------AGAAA------------------------------------AG---G---------CAACGGTCGCTTG.................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................CGAG-----AAT--------------------------------------------------------------AGCAAAC------------------AGAAA------------------------------------AG---G---------..............................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................C---GTGCCCGGAACCGAG-----AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................GGGAGCGCGCAGAC---GTGCCCGGAACCGAG-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................TTACATTTGGGAGCGCGCAGAC---GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................AG-----AAT--------------------------------------------------------------AGCAAAC------------------AGAAA------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------AGCGAGAGCGT-TTATCAG......................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................ATTTGGGAGCGCGCAGAC---GTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................GGAGCGCGCAGAC---GTGCCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................C---GTGCCCGGAACCGAG-----AAT--------------------------------------------------------------AGCAAAC------------------AGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000100000
...................................................................................................AC---GTGCCCGGAACCGAG-----AAT--------------------------------------------------------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................AAT--------------------------------------------------------------AGCAAAC------------------AGAAA------------------------------------AG---G---------CAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AC------------------AGAAA------------------------------------AG---G---------CAACGGTCGC....................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCA-TGC----GTGAG-------CTTGTGC-......................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................AGCGCGCAGAC---GTGCCCGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-TGC----GTGAG-------CTTGTGC-GTGTG.................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................GAC---GTGCCCGGAACCGAG-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAT-------------------------------------------------------------------------------------------------TACA-------------------AGCGAGAGC................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................A-------------------------------------------------------------TTTTCCAACAT-CTACGC--AT..........................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................GCAGAC---GTGCCCGGAACCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................CGCGCAGAC---GTGCCCGGAACCGAG-----AAT--------------------------------------------------------------AGCAAAC------------------AGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................3811.001000000000000000000000000000000000000000000000000000000000100000
.............................................................................GTTTACATTTGGGAGCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TGCGAA-------------------------------------------------------------TTTTCCAACAT-CTAC................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG-------CTTGTGC-GTGTGTGTGTGT---GTGT...................................................................................2630.331000000000000000000010000000000000000000000000000000000000000000
droMoj3
CA------------------------A-CGCTCAACAAACTGTT--------------------AA--CCAGTTTACGTTTACATTTGGGAGCGCGCAGAC---GTGCCCGGAACCGTG-----AAT--------------------------------------------------------------AGCAAAC------------------GCAAA--------------AAG----------------------------------CAACGCTCGCTTGCAAA---------------------------------------------------------------------------------------------------------TTTTCC--AATA--TA-------------TACGC---ATAT-----------------------------------------------------CGTTTCCTTAGCACGCGAGCGTGTTTTATCAGTGCAGTGCGTGAGTGTA-------GGTGAGA-GTGTTC-------------------------------TTAGTGAAATTATTGCAGTG----CGCGTGTATTTGTGTATTT-GCACATGTATCGTCGTCGCTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTT-GCACATGTATCGTCGTCGCT.2613.003300000
..............................................................................................CGCAGAC---GTGCCCGGAACCGTG-----AAT--------------------------------------------------------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............................................................................................GCGCAGAC---GTGCCCGGAACCGTG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................CGTG-----AAT--------------------------------------------------------------AGCAAAC------------------GCAAA--------------AAG----------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
................................................................................................................................................................................................AAAC------------------GCAAA--------------AAG----------------------------------CAACGCTCGCTTG.................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-GTGTTC-------------------------------TTAGTGAAATTATTG..................................................2411.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGTGAGTGTA-------GGTGA.........................................................................................................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-GTGTTC-------------------------------TTAGTGAAATTATT...................................................2311.001000001
.................................................................................................................................................................................................AAC------------------GCAAA--------------AAG----------------------------------CAACGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................CGCAGAC---GTGCCCGGAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................TGGGAGCGCGCAGAC---GTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTG----CGCGTGTATTTGT............................1911.001000001
.............................................................................................GCGCAGAC---GTGCCCGGAACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTA-------GGTGAGA-GTGTTC-------------------------------TTAGTG...........................................................2611.001100000
.........................................................................TTACGTTTACATTTGGGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................GAC---GTGCCCGGAACCGTG-----AAT--------------------------------------------------------------AGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
droGri2
T--------------------------------------------------------------TAA--CCAGTTTACGTTTACATTTGGGAGCGCGCAGAC---GTGCCCGGAACAGAGAA-ACAAC------AAA-------------------------------------------CGTTGAGAATAGCAAAC------------------A------------------------------------GAAAAG---C---------CAACGGCCGCTTGCAAA-------------------------------------------------------------TTTTTCATCAT-CTACGC--ATTGTTGCCAT------------------------------------------TACAC---ACGCCAGTG-----------T--------TT------------------------AT-----------------------------CAGTGCA-TGC----GTGTG-------TGTGTGC-GTGTGTATGTGC---GTATATATGTATATACATATATATGCTATATATAGTTTAGTG----TGTGTGTGT-TGTGTATTT-ACACATGTATCGCCGTCGCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-TGC----GTGTG-------TGTGTGC-GTGTG.................................................................................................2311.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCA-TGC----GTGTG-------TGTGTGC-GTG...................................................................................................2411.00110

Generated: 05/17/2015 at 11:37 PM