dse_1213

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGAATGAGCAAGAAGCCTTCGTAAAGGAGGAGCTGCTGCACGTCGCCCAGGTTGGAAAACTTGGCACTGAAGCGAACTTCGTTCTTCAGGCATATCCAGAGGAGCGACTGCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGATGAGGAACTGCTGGCTTCTGCTTTAGAGGAGAAACTTCTTCCTTTTGCTCCAGAAAAGTCAATTTCAACT ***************************************************************************************************************************************........(((...................(((.((.......)).)))....)))********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V113 male body	V114 embryo	V115 head
............................................................................................................................................................................TACTACAGATGAGGAACTGCT..........................................................	21	0	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................AAACTTCTTCCTTTTGCT.....................	18	0	1	1.00	1	0	0	1	0
......................................CACGTCGCCCAGGTTGGAAA.................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0
..............................AGCTGCTGCACGTCGCCCAGG........................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................TGCTGGCTTCTGCTTTAGAGGA........................................	22	0	1	1.00	1	0	1	0	0
..........................................................................................................................................................................GATACTACAGATGAGGAACTGCTGGC.......................................................	26	0	1	1.00	1	0	1	0	0
.........................................................................................................................................CTTTCTTCGGCTTCAAAGGAG.............................................................................................	21	0	1	1.00	1	1	0	0	0
.....................................GCACGTCGCCCAGGTTGGAAAA................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................GCTGGCTTCTGCTTTAGAGGA........................................	21	0	1	1.00	1	1	0	0	0
.......................................................................GCGAACTTCGTTCTTCAGGCATATCCA.........................................................................................................................................................	27	0	1	1.00	1	0	0	1	0
.....GAGCAAGAAGCCTTCGTAAAGGAGGA............................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1
...........................................................................................................................TAGATGAGATACCGCTTTCTTCGGC.......................................................................................................	25	1	1	1.00	1	1	0	0	0
.................................TGCTGCACGTCGCCCAGGTTGGAA..................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................GATACTACAGATGAGGAACTGCTGGCTT.....................................................	28	0	1	1.00	1	0	1	0	0
............................GGAGCTGCTGCACGTCGCC............................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
.........................................................................GAACTTCGTTCTTCAGGCATATCCA.........................................................................................................................................................	25	0	1	1.00	1	1	0	0	0
...................................................................................................................................................................................GATGAGGAACTGCTGGCTT.....................................................	19	0	1	1.00	1	0	1	0	0
.GAATGAGCAAGAAGCCTTCGTAAAGG................................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0
.............................................................................................ATCCAGAGGAGCGACTGCCTATTTCT....................................................................................................................................	26	0	1	1.00	1	0	1	0	0
.......................................ACGTCGCCCAGGTTGGAAAA................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1
.................................................................................................................AGTTCTGTTTCAGACGAGCT......................................................................................................................	20	3	14	0.07	1	0	1	0	0
...................CGTAACGGAGGAGGAGCTGCA...................................................................................................................................................................................................................	21	3	15	0.07	1	1	0	0	0
........................................................................................................................TAGCGGATGAGATACCGC.................................................................................................................	18	3	20	0.05	1	0	0	1	0

CCTTACTCGTTCTTCGGAAGCATTTCCTCCTCGACGACGTGCAGCGGGTCCAACCTTTTGAACCGTGACTTCGCTTGAAGCAAGAAGTCCGTATAGGTCTCCTCGCTGACGGATAAAGACAAAGTCTACTCTATGGCGAAAGAAGCCGAAGTTTCCTCTTTGACAACGGACTATGATGTCTACTCCTTGACGACCGAAGACGAAATCTCCTCTTTGAAGAAGGAAAACGAGGTCTTTTCAGTTAAAGTTGA ********************************************************........(((...................(((.((.......)).)))....)))***************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body
................................................................................................................ATCAAGACAAAGTCTGCTCG.......................................................................................................................	20	3	11	0.09	1	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_31:535103-535353 -	dse_1213	GGAATGAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCGCCCAGGTTGGAAAACTTGGCACTGAAGCGAACTTCGTTCTTCAG---------------------------GCATAT---------------------------CCAGAGGAGCGACTGCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGA---TGAGGAACTGCTGGCTTCTGCTTTAGAGGAGAAACTTCTTCCTTTTGCTCCAGAAAA---------------------------G---TCAATTTCAACT
droSim2	3r:27145518-27145768 -		GGAATGAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCGCCCAGGTTGGAAAACTTGGCACTGAAGCGAACTTCGTACTTCGG---------------------------GCATAT---------------------------CCAGAGGAGCGACTGCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGA---TGAGCAACTGCTGACTTCTGCTTTAGAGGAGAAACTTCTTCCTTTTGCTCCAGAAAA---------------------------G---TCAATTTCAACT
dm3	chr3R:27884367-27884623 -		GGAGTGAG--CAACAAGCCTTTGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACCCTGTTGGAGATGTTGTTGCCCAGGTTGAAAATCTTGGCACTGAAAAGAACTTCGTTGTTGAAGAA---------------------------------------------------------------GAGCGACTTCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGA---TGAGCAACTGCTGACTTCTGCTTTGGAGGAGAAACTGCGCTCTGTTGCTCCAGAGGA---------------------------G---TCAGTGTCAACT
droEre2	scaffold_4820:59901-60169 +		GAAATGAG--CAACAAGTAATCGC------------------------------------------------------------------------------------------------------------------CAAGGAGGAACCGCTGTACGCTGTTGGAGATTTCGTTGCCCAGGATGAAAATCTTGCCACTGAAAATATCTTCGTTGGTGAAGACTGTGTACCCGAAAATGAACAGC---------------------------------------------------CTCATGCTGTTTCAGAGGAGACACCACTTGTTTCTGCTTCAAAGGAGAAACTGTTGCCTTGTACTTCAGA---TGAGCAATTGCTGCCTTCTCCTTTGGGACAGAACCTGCTCATTGCTGCCCCAGAGGA---------------------------G---CCATTGTCAGCC
droYak3	3R:28812575-28812864 -		G---TGAG--CAACACGTCATCGC------------------------------------------------------------------------------------------------------------------AAATGAGGAACTGCAAGACGCTGTTGGAGATTTCGTTCCCCAGGATGGAAATCTTGGCACTGAAAAGAACTTAGTTGCTGAAGACTGTGTAATCGAAAATATGCAGGCTGCATATTCGGAAGAGCGACTAC---------------------------CTATTGCTGTTTCAGAGGAGACACCACTTTTATCTCCTTCAAATGAGAAACTCTTGCCTGGTACTCCAGA---TGAGCAATTGCTGCCTTCTGCTTCGGAAAAGGAACTGCCCTCTGCTGATGCAGAGAT---------------------------G---CACTTGTCAGTC
droEug1	scf7180000409488:21198-21517 +		AAAAT-----------------------TTTGTTTCCG------------------------------------------------------------------------------AGGAGGAACATATTTCTGTTCCAAAGAATGAAGTGGTGCATACTATCGGAGACTTTGTTTCCCGGGA---AGACGTTGCCACTGAAACGAA------------AGACTTTGTTCCCTTAAATGAGCAACCTGGTTCTTCAGAGGAGCAAGTGATTTTTACTGCTCCAGA---------------------------GGAGCAAGTGATTTTTACTGCTCCAGAGGAGCAAGTGATTTTTACTGCTCCAGA---GGAACAAGTGATGTCTGCTGCTTTATCGGAGCAACTCCAGTCTGATGCTCCAGGGGAGCCACTCATGTCTGATGCTCCAGGGGAG---TCACTCATGTCT
droBia1	scf7180000301591:21100-21362 +		AAGAGGAT--CAACACGCTATTGGAAATTTTGATTCCG------------------------------------------------------------------------------AAGACAAACAGTTTTCCGCTTCAGAGGAGGAGCTGCTGCCCGCTGTGGCAGACGTCGTTGTCGAGAAAGAAGAACTTGCCTCTGACAAGAAAATCATATCTGAAGAGTTTGCCTCTATCAAAGAACAGCATGCTGATCCCGAGGAGCAACTACTGTCTGCTGCTATAGG---------------------------GGAGCCT---------------------------------------------------------C---TG---TCTGCAGCAGGTGAGGAGTTTTTGTCCGAAGCTGCAAAAAA------------------------------------TACGGCT
droTak1	scf7180000415712:1019450-1019709 -		AAAGTGAT--CAACCAGGTCTTGAAAATTTTGTTTCCG------------------------------------------------------------------------------AGGAGGAAGAGAATTCTCCCCCAGAGGAGAAACTACAGCACGGTGGAGAAGACTTCAGTCCCAAA---GAAGAACTTGCCTCTGAAGAGAAAATCATAGTGGAAGACTTTGTCCCCATCAAAGAGGAGCCCGCTGTTCCCGAGGAGCAACTGCTTCCAGCTGCTACACA---------------------------GGCGCCA------------------------------------------------------------CTGACTGCTGCTGCAGAGGAGTCACT---GTCTGTTGCACAAGAAGA---------------------------A---C------CGATT
droEle1	scf7180000490056:29117-29282 -		---------------------------------------------------------------------------------------------------------------------------------------TCCAGAGGAGCAACTGCTGCCGGCCGTGGGAGACTCCGTTCCTCAGAAAGAAGAGCTACCCGCTATAAAACCGATATTTGTTGAAAAACATATTCCAACAGAAGAGCAGATTGCTGCTTCCGAGGAACAAGAGCTACCTGTTGGGTCAGA---------------------------GGTG---------------------------------------------------------------------------------------------------------------------------------------------CCGAAGCTGCCT
droRho1	scf7180000777196:66013-66220 -		AGAGCTAC--CAGATCTCCTTTG-------------------------------------------------------------------------------------------------------------------CAAGGAGCAACTGCTGACGGCTTGGGAAAACTCCGTTCCACAAAAA---GATCAGCCCGCTGAAGAGAATATATTTGTTAACAAATTTGTTCCAATAAAAGAGCAGATTGCTGCTCCCGAGGGACCAGAGCTATCTGTTGCTTCAGA---------------------------GGGA------------------------------------------------------------------------------------CCAGAGCTGTCTATTGCTCCTGAGGA---------------------------G---TCACCAGTAACC
droFic1	scf7180000454097:319661-319940 -		GGAACAAGAGCTGCTTGCTAAGGGAGACTTCCTTACGG------------------------------------------------------------------------------AGGAGCAAAAGAATAACTCTCAAGGAGAACAACTACTGCACGCTGTTGAAGACCGTGTTTTTCAGGAAGATCAGCTTGCCACTGTTGAGGAGAACATTGTTGAGGACATTGTTCCAATAAAAGAAGAGCAAAATGCTTTAGAGAAGCTAGAGGTGTCTGCTGATTTAGA---------------------------GCAGCAGGAA---------------------------------------------------------CTATCTTCTGCCCTAGAGGAGAAAGTATCGCCTGATGTTCTTGAAAA---------------------------TGTGTTGTTATCTTCA
droKik1	scf7180000302475:1915536-1915786 +		GGGCCAAG--CCAGA---TTTTG---------AATCCGAGTACTTTAATTTGGGCGACAAGGTGCAGGCTCAGGCCACAGAGGATCAGCCACAGGAGCAAAACTTTGTTATCCCTCAGGAGCAGCAGTTTTCCGCTCCCGAAGAGCAAGTTTTACCACCCATTGGAGACTTTGTGGCT------------------------------------------------------------------------------------------------------------------------------------------------------CAGGATCCACAGGAGGATTTGCTGCCCGTTGCTAAAGAGTTTGTGGAACAGACCACTGCTGCT------------------------GCCGCTGCTGT---------------------------T---GCGGCTGCTACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

GGAATGAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCGCCCAGGTTGGAAAACTTGGCACTGAAGCGAACTTCGTTCTTCAG---------------------------GCATAT---------------------------CCAGAGGAGCGACTGCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGA---TGAGGAACTGCTGGCTTCTGCTTTAGAGGAGAAACTTCTTCCTTTTGCTCCAGAAAA---------------------------G---TCAATTTCAACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................TACTACAGA---TGAGGAACTGCT........................................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCTTCCTTTTGCT...................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................CACG---------------TCGCCCAGGTTGGAAA........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
..................................................................................................................................................AGCTGCTGCACG---------------TCGCCCAGG...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCTGGCTTCTGCTTTAGAGGA......................................................................	22	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................GATACTACAGA---TGAGGAACTGCTGGC.....................................................................................	26	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................CTTTCTTCGGCTTCAAAGGAG..............................................................................................................................	21	1	1.00	1	1	0	0	0
.........................................................................................................................................................GCACG---------------TCGCCCAGGTTGGAAAA.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTTCTGCTTTAGAGGA......................................................................	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................GCGAACTTCGTTCTTCAG---------------------------GCATAT---------------------------CCA..........................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.....GAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGA..................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
.....................................................................................................................................................TGCTGCACG---------------TCGCCCAGGTTGGAA.........................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GATACTACAGA---TGAGGAACTGCTGGCTT...................................................................................	28	1	1.00	1	0	1	0	0
................................................................................................................................................GGAGCTGCTGCACG---------------TCGCC...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................GAACTTCGTTCTTCAG---------------------------GCATAT---------------------------CCA..........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GA---TGAGGAACTGCTGGCTT...................................................................................	19	1	1.00	1	0	1	0	0
.GAATGAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGG......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................AT---------------------------CCAGAGGAGCGACTGCCTATTTCT.....................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...........................................................................................................................................................ACG---------------TCGCCCAGGTTGGAAAA.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1

droSim2

GGAATGAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCGCCCAGGTTGGAAAACTTGGCACTGAAGCGAACTTCGTACTTCGG---------------------------GCATAT---------------------------CCAGAGGAGCGACTGCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGA---TGAGCAACTGCTGACTTCTGCTTTAGAGGAGAAACTTCTTCCTTTTGCTCCAGAAAA---------------------------G---TCAATTTCAACT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................ACTACAGA---TGAGCAACTG..........................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGAAAACTTGGCACTGAAGCGAAC.....................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................TGCACG---------------TCGCCCAGGTTGGAAAACT.....................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GAACTTCGTACTTCGG---------------------------GC............................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGGAGGAGCTGCTGCACG---------------TCGCCC..................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTGGAAAACTTGGCACTGAAGC.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................T------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCGCC...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GCACG---------------TCGCCCAGGTTGGA..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GGAGGAGCTGCTGCACG---------------TCGCC...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......G--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGA.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CG---------------TCGCCCAGGTTGGAAAACTT....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TACCGCTTTCTTCGG.........................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............AGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGC.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGGAGAAACTGTTGCCT..................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTCGTACTTCGG---------------------------GCATAT---------------------------CCAGAG.......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AAGGAGGAGCTGCTGCACG---------------TCGCC...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TGAGCAACTGCTGACTTCTGCTTT............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTACTTCGG---------------------------GCATAT---------------------------CCAGA........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCGCCCA.................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......G--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGC................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CCGCTTTCTTCGGCTTCA....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TTCAAAGGAGAAACTGTTGCCTGATAC.............................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGCTGCACG---------------TCGCCCAGGTTGGAAAAC......................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................TTCGG---------------------------GCATAT---------------------------CCAGAGGAGCGA.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GG---------------------------GCATAT---------------------------CCAGAGGAGC...................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TCAGATGAGATACCGCTTTCTTCGGC........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTCAGATGAGATACCGCTTTCTTCGGC........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGAAAACTTGGCACTGAAGCGAACTT...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GCTGCTGCACG---------------TCGCCCA.................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................TGCTGCACG---------------TCGCCCAGGTTGGAAAACT.....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCCTTTTGCTCCAGAAAA---------------------------................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTCGTACTTCGG---------------------------GCATAT---------------------------CCAGAGGAGC...................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGAAAACTTGGCACTGAAGCGA.......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................AGATGAGATACCGCTTTCTTCGGC........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GCATAT---------------------------CCAGAGGAGCGACTGCCT...........................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GAGATACCGCTTTCTTCGGCTTC.....................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTGAAGCGAACTTCGTACTTCGG---------------------------GC............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGCCTGATACTACAGA---TGAGCAACTG..........................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................AGCGAACTTCGTACTTCGG---------------------------GC............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGAG--CAAGAAGCCTTCGT------------------------------------------------------------------------------------------------------------------AAAGGA.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GTTGGAAAACTTGGCACTGAAGC.........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCTGACTTCTGCTTTAGAA........................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGGCACTGAAGCGAACTTCGTACTA............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTTTGCTCCAGAAAA---------------------------G---TC..........	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GCTGCACG---------------TCGCCCA.................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................GT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACG---------------TCG.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dm3

GGAGTGAG--CAACAAGCCTTTGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTGCACCCTGTTGGAGATGTTGTTGCCCAGGTTGAAAATCTTGGCACTGAAAAGAACTTCGTTGTTGAAGAA---------------------------------------------------------------GAGCGACTTCCTATTTCTGTTTCAGATGAGATACCGCTTTCTTCGGCTTCAAAGGAGAAACTGTTGCCTGATACTACAGA---TGAGCAACTGCTGACTTCTGCTTTGGAGGAGAAACTGCGCTCTGTTGCTCCAGAGGA---------------------------G---TCAGTGTCAACT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....TGAG--CAACAAGCCTTTGT------------------------------------------------------------------------------------------------------------------AAAGGAGGA..................................................................................................................................................................................................................................................................................................................................	27	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TACAGA---TGAGCAACTGCTGACTTC..................................................................................	24	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................GTTGGAGATGTTGTTGCCCAGGTTGAAA.........................................................................................................................................................................................................................................................................................	28	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGGAGATGTTGTTGCCCAGGTTGAAAA........................................................................................................................................................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................................................................TTGGCACTGAAAAGAACTTCGTTGTT............................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGCCTGATACTACAGA---TGAGCAAC............................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CTGATACTACAGA---TGAGCAACTGCTGA......................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................ACTTCGTTGTTGAAGAA---------------------------------------------------------------GAGCGACT...............................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................CTTCCTATTTCTGTTTCAGATGAGA........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCTGTTGCTCCAGAGGA---------------------------G---TC..........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TGT------------------------------------------------------------------------------------------------------------------AAAGGAGGAGCTGCTG...........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACTACAGA---TGAGCAACTGCTG.......................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CTTCGTTGTTGAAGAA---------------------------------------------------------------GAGC...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCTGACTTCTGCTTTGGAGGAG.....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GGAGAAACTGTTGCCTGATACTAC..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGACTTCTGCTTTGG..........................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................TGCTGCACCCTGTTGGAGATGTTGTA......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GAAATGAG--CAACAAGTAATCGC------------------------------------------------------------------------------------------------------------------CAAGGAGGAACCGCTGTACGCTGTTGGAGATTTCGTTGCCCAGGATGAAAATCTTGCCACTGAAAATATCTTCGTTGGTGAAGACTGTGTACCCGAAAATGAACAGC---------------------------------------------------CTCATGCTGTTTCAGAGGAGACACCACTTGTTTCTGCTTCAAAGGAGAAACTGTTGCCTTGTACTTCAGA---TGAGCAATTGCTGCCTTCTCCTTTGGGACAGAACCTGCTCATTGCTGCCCCAGAGGA---------------------------G---CCATTGTCAGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................ATCGC------------------------------------------------------------------------------------------------------------------CAAGGAGGAACCGCT............................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0	0
.........................................................................................................................................................................TTCGTTGCCCAGGATGAAAATCTTGCC.................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................TGTTTCTGCTTCAAAGGAG..............................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................GTTGGTGAAGACTGTGTA................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................CTCCTTTGGGACAGAACCTGCTCA...........................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................GTTGGAGATTTCGTTGCCCAGGA..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCTGCTTCAAAGGAGAAACTGTTGCCTT.................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGTACTTCAGA---TGAGCA..............................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AATTGCTGCCTTCTCCTTTGGGAC.......................................................................	24	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................CGCTGTTGGAGATTTCGTTGCCCAGG...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................GCCTTCTCCTTTGGGACAGA....................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................GGAACCGCTGTACGCTGTTGGAG..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..AATGAG--CAACAAGTAATCGC------------------------------------------------------------------------------------------------------------------C..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................GC------------------------------------------------------------------------------------------------------------------CAAGGAGGAACCGCTGTACGCTGTT..................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGCTCATTGCTGCCCCA................................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGAACCTGCTCATTGCTGCCCC.................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGGTGAAGACTGTGTACCC.............................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTACTTCAGA---TGAGCAATTGCT........................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................GAAAATATCTTCGTTGGTGAAGACTGTG..................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GCTTCAAAGGAGAAACTGTTGCCT..................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGCCCCAGAGGA---------------------------G---C...........	19	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCAGAGGA---------------------------G---CCATTGTC....	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGCCTTGTACTTCAGA---TGAG................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....TGAG--CAACAAGTAATCGC------------------------------------------------------------------------------------------------------------------CAAGGAGGA..................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...ATGAG--CAACAAGTAATCGC------------------------------------------------------------------------------------------------------------------CAAGGA.....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCAGAGGA---------------------------G---CCATTGTCAG..	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GTTTCAGAGGAGACACCACTT................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................GC---------------------------------------------------CTCATGCTGTTTCAGAGGAGACACC....................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................TGGAGATTTCGTTGCCCAGGATGAAAAT.......................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................AAGACTGTGTACCCGAAAATGAAC...................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................GTTTCAGAGGAGACACCACTTGTTTCT..........................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.......................C------------------------------------------------------------------------------------------------------------------CAAGGAGGAACCGCTGTACGCTG....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GCCTTGTACTTCAGA---TGAGCAAT............................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
................GTAATCGC------------------------------------------------------------------------------------------------------------------CAAGGAGGAACCGC.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................AGC---------------------------------------------------CTCATGCTGTTTCAGAGGAGA........................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGAACCTGCTCATTGCTGCCCCAGA..............................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

G---TGAG--CAACACGTCATCGC------------------------------------------------------------------------------------------------------------------AAATGAGGAACTGCAAGACGCTGTTGGAGATTTCGTTCCCCAGGATGGAAATCTTGGCACTGAAAAGAACTTAGTTGCTGAAGACTGTGTAATCGAAAATATGCAGGCTGCATATTCGGAAGAGCGACTAC---------------------------CTATTGCTGTTTCAGAGGAGACACCACTTTTATCTCCTTCAAATGAGAAACTCTTGCCTGGTACTCCAGA---TGAGCAATTGCTGCCTTCTGCTTCGGAAAAGGAACTGCCCTCTGCTGATGCAGAGAT---------------------------G---CACTTGTCAGTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................GACGCTGTTGGAGAT............................................................................................................................................................................................................................................................................................................	15	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10
................................................................................................................................................................GTTGGAGATTTCGTTCCCCAGGATGGAAAT.......................................................................................................................................................................................................................................................................................	30	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
............................................................................................................................................................CGCTGTTGGAGATTTCGTTCCCCAGG...............................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
........................................................................................................................................................................................................................................................................................................................................................AACTCTTGCCTGGTACTCCAGA---TGAGC...............................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................ATATTCGGAAGAGCGACTAC---------------------------CT...........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TGTTGGAGATTTCGTTCCCCAGGATGGAA.........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TCCAGA---TGAGCAATTGCTGCCTTC..................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................CATCGC------------------------------------------------------------------------------------------------------------------AAATGAGGAACTGC.............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................ATTGCTGTTTCAGAGGAGACACCACT.................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGAAAAGGAACTGCCCT...........................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGCTGTTTCAGAGGAGACACC....................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACTGCCCTCTGCTGATGCA................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GATTTCGTTCCCCAGGATGGAAA........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......AG--CAACACGTCATCGC------------------------------------------------------------------------------------------------------------------AAATGAGGAAC................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................GCTGCATATTCGGAAGAGC..............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GCTGAAGACTGTGTAATCGAAAATAT.....................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCTGAAGACTGTGTAATCGAAAATATGC...................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GAGGAACTGCAAGACGCTGTTGGA...............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATGAGAAACTCTTGCCTGGTA..............................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TCAAATGAGAAACTCTTGCCTGGTACTC...........................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGGCTGCATATTCGGAAGAGC..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................AC---------------------------CTATTGCTGTTTCAGAGGAGA........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GCTGAAGACTGTGTAATCG............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAAAT-----------------------TTTGTTTCCG------------------------------------------------------------------------------AGGAGGAACATATTTCTGTTCCAAAGAATGAAGTGGTGCATACTATCGGAGACTTTGTTTCCCGGGA---AGACGTTGCCACTGAAACGAA------------AGACTTTGTTCCCTTAAATGAGCAACCTGGTTCTTCAGAGGAGCAAGTGATTTTTACTGCTCCAGA---------------------------GGAGCAAGTGATTTTTACTGCTCCAGAGGAGCAAGTGATTTTTACTGCTCCAGA---GGAACAAGTGATGTCTGCTGCTTTATCGGAGCAACTCCAGTCTGATGCTCCAGGGGAGCCACTCATGTCTGATGCTCCAGGGGAG---TCACTCATGTCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGAGGAT--CAACACGCTATTGGAAATTTTGATTCCG------------------------------------------------------------------------------AAGACAAACAGTTTTCCGCTTCAGAGGAGGAGCTGCTGCCCGCTGTGGCAGACGTCGTTGTCGAGAAAGAAGAACTTGCCTCTGACAAGAAAATCATATCTGAAGAGTTTGCCTCTATCAAAGAACAGCATGCTGATCCCGAGGAGCAACTACTGTCTGCTGCTATAGG---------------------------GGAGCCT---------------------------------------------------------C---TG---TCTGCAGCAGGTGAGGAGTTTTTGTCCGAAGCTGCAAAAAA------------------------------------TACGGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAGTGAT--CAACCAGGTCTTGAAAATTTTGTTTCCG------------------------------------------------------------------------------AGGAGGAAGAGAATTCTCCCCCAGAGGAGAAACTACAGCACGGTGGAGAAGACTTCAGTCCCAAA---GAAGAACTTGCCTCTGAAGAGAAAATCATAGTGGAAGACTTTGTCCCCATCAAAGAGGAGCCCGCTGTTCCCGAGGAGCAACTGCTTCCAGCTGCTACACA---------------------------GGCGCCA------------------------------------------------------------CTGACTGCTGCTGCAGAGGAGTCACT---GTCTGTTGCACAAGAAGA---------------------------A---C------CGATT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------------------------------------------------------------------------------------------------------------------------TCCAGAGGAGCAACTGCTGCCGGCCGTGGGAGACTCCGTTCCTCAGAAAGAAGAGCTACCCGCTATAAAACCGATATTTGTTGAAAAACATATTCCAACAGAAGAGCAGATTGCTGCTTCCGAGGAACAAGAGCTACCTGTTGGGTCAGA---------------------------GGTG---------------------------------------------------------------------------------------------------------------------------------------------CCGAAGCTGCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAGCTAC--CAGATCTCCTTTG-------------------------------------------------------------------------------------------------------------------CAAGGAGCAACTGCTGACGGCTTGGGAAAACTCCGTTCCACAAAAA---GATCAGCCCGCTGAAGAGAATATATTTGTTAACAAATTTGTTCCAATAAAAGAGCAGATTGCTGCTCCCGAGGGACCAGAGCTATCTGTTGCTTCAGA---------------------------GGGA------------------------------------------------------------------------------------CCAGAGCTGTCTATTGCTCCTGAGGA---------------------------G---TCACCAGTAACC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGAACAAGAGCTGCTTGCTAAGGGAGACTTCCTTACGG------------------------------------------------------------------------------AGGAGCAAAAGAATAACTCTCAAGGAGAACAACTACTGCACGCTGTTGAAGACCGTGTTTTTCAGGAAGATCAGCTTGCCACTGTTGAGGAGAACATTGTTGAGGACATTGTTCCAATAAAAGAAGAGCAAAATGCTTTAGAGAAGCTAGAGGTGTCTGCTGATTTAGA---------------------------GCAGCAGGAA---------------------------------------------------------CTATCTTCTGCCCTAGAGGAGAAAGTATCGCCTGATGTTCTTGAAAA---------------------------TGTGTTGTTATCTTCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGCCAAG--CCAGA---TTTTG---------AATCCGAGTACTTTAATTTGGGCGACAAGGTGCAGGCTCAGGCCACAGAGGATCAGCCACAGGAGCAAAACTTTGTTATCCCTCAGGAGCAGCAGTTTTCCGCTCCCGAAGAGCAAGTTTTACCACCCATTGGAGACTTTGTGGCT------------------------------------------------------------------------------------------------------------------------------------------------------CAGGATCCACAGGAGGATTTGCTGCCCGTTGCTAAAGAGTTTGTGGAACAGACCACTGCTGCT------------------------GCCGCTGCTGT---------------------------T---GCGGCTGCTACT	Size	Hit Count	Total Norm	Total
No Reads

dse_1213

scaffold_31:535153-535303 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.2	-8.4	-8.2