dse_1200

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACTATTTAACTAAAGTAATGTAATTAAATATAAGATTGAATTCAATTAAGCTATCTATTTAATCATCGAGTACACACTGTATGTGAATTTGCAAGCATGTAAAAGCGCTTAGAAGTGAACAAACAGAAAATAGGTGCATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTCTCTTCTTTTTTGACAAGGTTACCTACAAACTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA ************************************************.............(((..(((....)))..)))(((((((((((.((..((((.(((((((....((......)).....))))))).))))..)).))))).)))))).(((((...)))))............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	M054 female body
................................................................................................................................................................................................................................CGTGGAGGAACTGTGTCAGGAA.....	22	0	1	1.00	1	1	0
...................................................................................................................................................................................................................AACTGAAGCTCCCCGTGGAGGAAC................	24	0	1	1.00	1	1	0
..................................................................................................................................................................................................................AAACTGAAGCTCCCCGTGGAGGAACT...............	26	0	1	1.00	1	1	0
.......................................................................................................AGCGCTTAGAAGTGAGAAT.................................................................................................................................	19	3	20	0.20	4	0	4
.......................................................................................................AGCGCTTAGAAGTGAGAA..................................................................................................................................	18	2	7	0.14	1	0	1
.........................AAACATAAGATAGAATTTAATT............................................................................................................................................................................................................	22	3	15	0.07	1	1	0

TGATAAATTGATTTCATTACATTAATTTATATTCTAACTTAAGTTAATTCGATAGATAAATTAGTAGCTCATGTGTGACATACACTTAAACGTTCGTACATTTTCGCGAATCTTCACTTGTTTGTCTTTTATCCACGTAAATTAACTAACGTGTTAAATTAGTTGCAACAACTGGTATATAAAGAGAAGAAAAAACTGTTCCAATGGATGTTTGACTTCGAGGGGCACCTCCTTGACACAGTCCTTCAATT ************************************************.............(((..(((....)))..)))(((((((((((.((..((((.(((((((....((......)).....))))))).))))..)).))))).)))))).(((((...)))))............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	V115 head
......................................................................................................................................................................................................................................GCTTGACAGAGTGCTTCAA..	19	3	11	0.09	1	1	0
...................................................................................................................................................................................AAAAGAGAAGAAAAAACT......................................................	18	1	14	0.07	1	0	1
............................................................................................................................................................................TGGTATATAAAGAGGAGAGT...........................................................	20	3	15	0.07	1	1	0
......................................................................................................................................ACTTAAATGAACTAACGTGC.................................................................................................	20	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_3:6556350-6556600 -	dse_1200	ACTATTTAACT----A--------AAGTAATGTAATTAAATA--TAAGAT------------------------------------------------------------------TGAATTCAATTAA-------------GCTA---TCTA---------------------------------------------------------T--TT-AA---TCATCGAGTACACACTGTATGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGA----ACAA-ACAGA----AAATA--------GGTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTCTCTT-----CT-TTTTTGACAAGGTTACCTACAAACTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
droSim2	2l:10813522-10813779 -	dsi_21338	ATTATTTAATA----ATACCAGC-AATTAATGTAATTAAGTA--TAAGAT------------------------------------------------------------------TCAATTCAATTAA-------------GCTA---TTTA---------------------------------------------------------T--TC-AA---CTATCGAGTACACACTGTATGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGG----ACAA-ACAGA----AAATA--------GGTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTCCCTT-----CT-TTTTTGACAAGGTTACCTACAAACTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
dm3	chr2L:11155084-11155338 -		AATATTTGAAAGTCTATGCCTACAATGCA-----AT--------------------------------------------------------------------------------TCATTTAAATTAA-------------GCTA---TTCGATTGCTT-----------------------------------------------------TT-AC---TTATCGAGTACACACTGTATGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGG----ACAA-ATAGA----AAATA--------AGTG--CATTTAATTTATTGCACAATTTAATCAACGTTGTTGACCATATATTTTCCTTCTT--TT-TTTTTGACAAGGTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
droEre2	scaffold_4929:14287903-14288145 +		AATA--------------CCTACAATGCAATATAATCCA---------------TACAATATACA-------------------------------------------------------------------------------TA---TTCTGTTGA---------------------------------------------------AT--TT-GG---CTATCGAGTGCGCACTGTAGGTGCATTT--GCAAGCATGTAAA-AGTGCTTAGA-AGTGG----ACAA-AGAGA----CAACA--------GAAG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTCTCCTG--C--TT-TTTTTGACAAGGTTACCTACAAGCTAAAACTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
droYak3	2L:7551398-7551648 -	dya_256	TT-ATTAAATT----ATGCCTTCAATGCAATGTAAT--------------------------------------------------------------------------------TCAATTTAATTAG-------------GCTA---TTCGGTTAA----------------------------------------------------C--TT-GG---CTATCGAGTACACACTGTAAGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGG----ACAA-ACAGA----CAATA--------GATG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTTCCTT-----CT-TTTTTGACAAGGTTACCTACAAGCTAAAACTCCCCGTGGAGGAACTGTGCCAGGAAGTTAA
droEug1	scf7180000407253:590860-591104 -		GTAACTAAAT---------------TGCATTGAAACTTATTT--TGAGGT------------------------------------------------------------------TGAAGTTGATATG-------------GCT-----------------------------------------TAGAACTATTATAAATTCTTTGAA---TT-TG---TTACCTAGTCTCTACTGTATTTGAACTT--GTAATCATGTAAA-AGTGCTTCAG-TGT---------------------------------GTTG--CATTTAATGAATTGCACAATTTAATCAATG-TGTTGACCATTTGTTT-------T--TG-TTTTTAACAAGGTTACCTACAAGCTGAAACTCCCCGTGGCGGAGCTGTGTGAGGAAGTTAA
droBia1	scf7180000302422:1938243-1938415 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTAAATGAATTT--GCAAGCATGTAAAGAGCGCTCA---AGTGG----GCAA-ACAGA----AAATA--------GTTG--CACCTAATTGATTGCACAATTTAATCAACGTTGCTGACCATTTGTTT-------T--TGTTTTTCGACAAGGTTACCTACAAGCTGAAACTCCCCGTGGAGGAGCTGTGCCAGGAAGTTAA
droTak1	scf7180000415871:39538-39828 +		TCTA--------------CCGTAAATGGA--G-----------------------------------------------------------AAGTTAAAAATAAATAAGAA---ATTCAATTTAATTAACAAATAAATAATAGTCG---TATATTTGTTTTAACCTTATTTTACAACAATCGTGT------------------------------------ATGATAAGTCTCCACTGTAAATGAATTT--GTAAGCATGTAAA-GAAGCTTACA-AGTGG----GCAA-ACAGA----AAATA--------GTTG--CATTTAATTGATTGCACAATTTAATCAAAGTTGTTGACCATTTATTT-------TTTTT-TTTTGTACAAGGTTACCTACAAGCTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
droEle1	scf7180000490644:350650-350991 +		AAAA-------------------------ATGTTAATAAAAA--TTATATTTGATTCAATATATGAATTCTGAATCAGGTTATCAAAAATTAAGTTCCTAAAAAAGCCAAA---CTTTAATTTTATTA-------AATTCAAGTTA---TTTAATTATTTTCTCTTACTTTAACAACAACCCGGCTTAAA---------------------------A---ATACCTAAGCCCCACCGTATATGAGCTT--GCAAGCATGTAAA-TGCGTTCACA-AGTGA----GAGA-AAAGA----AAATACTAGC--ATTTG--CTTTTAATTGATTGCACAATTTAATCAACATTGTTGACCATTTGTTT-------T--TG-TATTTGACAAGGTTACCTACAAACTGAAACTCCCCATGGCGGAACTATGTGACGAAGTTAA
droRho1	scf7180000779437:28520-28794 +		ATCAC-----------------AATTTGA--A-------TAT--TAAAGA---------------------------------------------------TAAAGATAAAATAATTCAAG---ATTAACA-------------AA---TTTGGTTAA----A-------------------------------T--TAAATTCCTTAAATTATT-TC---CTAGCTAGGCTACACTGTAAATGAATTT--ATAAGCATGTAAA-AGCGTTTAGT-AGTGG----GCAA-ACAGA----AAATACTCCC--ACTTGCACATTTAATTGATTGCACAATTTAATCAACATTGTTGACCATTTATTT-------T--TG-TTTTTGACAAGGTTACCTACAAGCTGAAACTCCCTGTGGAGGAATTATGTCAGGAAGTTAA
droFic1	scf7180000454111:649866-650099 -		AACAGTTCAAA----G--------AATTTAAATAATTAAAAA--TGGCAT------------------------------------------------------------------TACATGTAG-------------------------------------------------------------------------------------T--TCTAC---ATTCCTAGTCCTCACTGTA----AAGAT--GTAAGCATGTTAA-AGTGTTTACA-AGTCG----GCAA-GCAGA----AAATA--------CTTG--CATTTAATTGATTACACAATTTAATCAACGTTGTTGACCATTTCTTT-------TTTTG-TTTCTGACAAGGTTACCTACAAGCTAAAACTCCCCGTGGAGGAATTGTGTCAGGAAGTTAA
droKik1	scf7180000302677:396694-396931 -		TAAATATAA-----------------------------------------------------------------------------------------------TCAAAAAATAATTTAAT---ATCAAAA---AAAG----GTCCCTGTTATG--------------------------------------------------------T--TC-CATTATCTGCGAATTATCACTGTAAATGCATTTATTCAAGTAC------CTCGCTTAGG-TGTGG----ACATTTCAGA----CAATA--------CTTG--CACTTAATTGATTGCACATTTTAATCAAAGTTGTTTACCATTTTTC-----------TT-ATTTTGACAAGGTTACCTACAAGCTGAAACTCCCCGTGGAGGAGCTCTGCAAGGAGGTGAA
droAna3	scaffold_12916:4295704-4295944 +		AGGATTTAAAT----AT----------AAAAGTAAA---------------------------------------------------------------------------ACATTTGAA------AAT-------------GTAA---TTTTTATAA----------------------------------------------------T--TT-CAT--TCCCCAAGTCCTCACTGTCCTCTACTTA--GTAATCTTGTAA--GGTGCTTAGGTGGTAG----ACGA-ATGAA----ATATGCATACATACTTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTTACCATTTATT---------------TTTCGACTAGGTTACCTACAAACTGAAACTCCCCGTGGAGCAGCTATGCCAGGAAGTTAA
droBip1	scf7180000396737:485245-485465 -		AC----------------------ATGCAATATAATCAAATGTAT-AAAT------------------------------------------------------------------TCAA-----------------------------------------------------------------------------------------AG--TC-TA---CCATCAAGTCCCCACTGTCCTCTACTTA--GTAAGCTTGTAA--TGTGCTTAGGTGGTAG----ACAA-ACGAAATATACATA--------CTTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTTACCATTTATT---------------TTTCGACTAGGTTACCTACAAACTGAAACTCCCCGTGGAGCAGCTATGCCAGGAAGTGAA
dp5	4_group3:6516961-6517109 -		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATG-AGTGCCTGAA-CAGAGACAATCAG-GGGGG----AAAAA--------ATTG--CACTTGATTGATTGCACAATTTAATCAAAGTTGTTTACGC---A--T-------T--TC-TCTTCGACAAGGTCACATACAAGCTGAAACTCCCAGTGGACGAGCTGTGCCAGGAAGTTAA
droPer2	scaffold_1:8008417-8008565 -		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATG-AGTGCCTGAA-CAGAGACAATCAG-GGGGA----AAAAA--------ATTG--CACTTGATTGATTGCACAATTTAATCAAAGTTGTTTACGC---A--T-------T--TC-TCTTCGACAAGGTCACATACAAGCTGAAACTCCCAGTGGACGAGCTGTGCCAGGAAGTTAA
droWil2	scf2_1100000004521:4637121-4637190 +		AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----TTT-------C--TT-CTTTTGTCAAGGTAACATATAAACTGAAACTCCCCGTGGATGAGCTTTGCAAGGAAGTTAA
droVir3	scaffold_12963:2340653-2340704 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTACATACAAATTGAAGCTGCCTGTGGATGAGCTCTGCAAGGAAGTAAA
droMoj3	scaffold_6500:27584678-27584738 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTTCAGGTTACATACAAGCTGAAGCTGCCGGTGGATGAGCTCTGCAAGGAAGTAAA
droGri2	scaffold_15126:1466501-1466578 +		ATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATTGTGC----T--TC-TATTTACTTAGGTTACATACAAGCTTAAGCTGCCGGTTGATGAGCTCTGCCAGGAAGTAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

ACTATTTAACT----A--------AAGTAATGTAATTAAATA--TAAGAT------------------------------------------------------------------TGAATTCAATTAA-------------GCTA---TCTA---------------------------------------------------------T--TT-AA---TCATCGAGTACACACTGTATGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGA----ACAA-ACAGA----AAATA--------GGTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTCTCTT-----CT-TTTTTGACAAGGTTACCTACAAACTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGGAACTGTGTCAGGAA.....	22	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAGCTCCCCGTGGAGGAAC................	24	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAAGCTCCCCGTGGAGGAACT...............	26	1	1.00	1	0	1	0	0

droSim2

ATTATTTAATA----ATACCAGC-AATTAATGTAATTAAGTA--TAAGAT------------------------------------------------------------------TCAATTCAATTAA-------------GCTA---TTTA---------------------------------------------------------T--TC-AA---CTATCGAGTACACACTGTATGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGG----ACAA-ACAGA----AAATA--------GGTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTCCCTT-----CT-TTTTTGACAAGGTTACCTACAAACTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................TACCTACAAACTGAAGCTCCCCGTGGA.....................	27	1	54.00	54	0	0	0	0	0	0	7	44	2	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTACCTACAAACTGAAGCTCCCCGTGGA.....................	28	1	5.00	5	0	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACAAACTGAAGCTCCCCGTGGAGGAAC................	28	1	4.00	4	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................A---CTATCGAGTACACACTG.........................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACCTACAAACTGAAGCTCCCCGTGGA.....................	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TACCTACAAACTGAAGCTCCCCGTG.......................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACAAACTGAAGCTCCCCGTGGAGGA..................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TACCTACAAACTGAAGCTCCCCGTGGAGGA..................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCCCGTGGAGGAACTGTGTCAGGA......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGGAACTGTGTCAGGAAGTT..	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CCTACAAACTGAAGCTCCCCGTGGA.....................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CTACAAACTGAAGCTCCCCGTGGAGGA..................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TACCTACAAACTGAAGCTCCCCGTGG......................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTCCCCGTGGAGGAACTGTGT...........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AGCGCTTAGA-AGTGA----..........................................................................................................................................................	15	8	0.25	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0

dm3

AATATTTGAAAGTCTATGCCTACAATGCA-----AT--------------------------------------------------------------------------------TCATTTAAATTAA-------------GCTA---TTCGATTGCTT-----------------------------------------------------TT-AC---TTATCGAGTACACACTGTATGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGG----ACAA-ATAGA----AAATA--------AGTG--CATTTAATTTATTGCACAATTTAATCAACGTTGTTGACCATATATTTTCCTTCTT--TT-TTTTTGACAAGGTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCCCGTGGAGGAACTGTGT...........	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCTCCCCGTGGAGGAACTGTG............	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AA-------------GCTA---TTCGATTGCTT-----------------------------------------------------T.................................................................................................................................................................................................................................	18	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTCCCCGTGGAGGAACTGTGTC..........	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCCCCGTGGAGGAACTGTGTCAGGA......	29	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGTGGAGGAACTGTGTCAGGAA.....	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTGGAGGAACTGTGTCAGGAAGTTA.	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACTAAAGCTCCCCGTGGAGGAACT...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAACTGTGTCAGGA......	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCCCCGTGGAGGAACTGTG............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCGTGGAGGAACTGTGTCAGGAC.....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTAATCAACGTTGTTGACCATA...............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGGAACTGTGTCAGGAAGT...	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AATA--------------CCTACAATGCAATATAATCCA---------------TACAATATACA-------------------------------------------------------------------------------TA---TTCTGTTGA---------------------------------------------------AT--TT-GG---CTATCGAGTGCGCACTGTAGGTGCATTT--GCAAGCATGTAAA-AGTGCTTAGA-AGTGG----ACAA-AGAGA----CAACA--------GAAG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTCTCCTG--C--TT-TTTTTGACAAGGTTACCTACAAGCTAAAACTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCCCCGTGGAGGAACTGTGT...........	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCCCCGTGGAGGAACTGTGT...........	24	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................TGA---------------------------------------------------AT--TT-GG---CTATCGAGTGCGCACT..........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCCCCGTGGAGGAACT...............	21	1	1.00	1	1	0	0	0	0	0	0

droYak3

TT-ATTAAATT----ATGCCTTCAATGCAATGTAAT--------------------------------------------------------------------------------TCAATTTAATTAG-------------GCTA---TTCGGTTAA----------------------------------------------------C--TT-GG---CTATCGAGTACACACTGTAAGTGAATTT--GCAAGCATGTAAA-AGCGCTTAGA-AGTGG----ACAA-ACAGA----CAATA--------GATG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTGACCATATATTTTCCTT-----CT-TTTTTGACAAGGTTACCTACAAGCTAAAACTCCCCGTGGAGGAACTGTGCCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACTGTGCCAGGAA.....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACTCCCCGTGGAGGAACTGTGC...........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TT-----CT-TTTTTGACAAGGTTACC............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AGGTTACCTACAAGCTAAAACTCCCCGC........................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAGGAACTGTGCCAGGAA.....	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTAACTAAAT---------------TGCATTGAAACTTATTT--TGAGGT------------------------------------------------------------------TGAAGTTGATATG-------------GCT-----------------------------------------TAGAACTATTATAAATTCTTTGAA---TT-TG---TTACCTAGTCTCTACTGTATTTGAACTT--GTAATCATGTAAA-AGTGCTTCAG-TGT---------------------------------GTTG--CATTTAATGAATTGCACAATTTAATCAATG-TGTTGACCATTTGTTT-------T--TG-TTTTTAACAAGGTTACCTACAAGCTGAAACTCCCCGTGGCGGAGCTGTGTGAGGAAGTTAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTAAATGAATTT--GCAAGCATGTAAAGAGCGCTCA---AGTGG----GCAA-ACAGA----AAATA--------GTTG--CACCTAATTGATTGCACAATTTAATCAACGTTGCTGACCATTTGTTT-------T--TGTTTTTCGACAAGGTTACCTACAAGCTGAAACTCCCCGTGGAGGAGCTGTGCCAGGAAGTTAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTA--------------CCGTAAATGGA--G-----------------------------------------------------------AAGTTAAAAATAAATAAGAA---ATTCAATTTAATTAACAAATAAATAATAGTCG---TATATTTGTTTTAACCTTATTTTACAACAATCGTGT------------------------------------ATGATAAGTCTCCACTGTAAATGAATTT--GTAAGCATGTAAA-GAAGCTTACA-AGTGG----GCAA-ACAGA----AAATA--------GTTG--CATTTAATTGATTGCACAATTTAATCAAAGTTGTTGACCATTTATTT-------TTTTT-TTTTGTACAAGGTTACCTACAAGCTGAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAA-------------------------ATGTTAATAAAAA--TTATATTTGATTCAATATATGAATTCTGAATCAGGTTATCAAAAATTAAGTTCCTAAAAAAGCCAAA---CTTTAATTTTATTA-------AATTCAAGTTA---TTTAATTATTTTCTCTTACTTTAACAACAACCCGGCTTAAA---------------------------A---ATACCTAAGCCCCACCGTATATGAGCTT--GCAAGCATGTAAA-TGCGTTCACA-AGTGA----GAGA-AAAGA----AAATACTAGC--ATTTG--CTTTTAATTGATTGCACAATTTAATCAACATTGTTGACCATTTGTTT-------T--TG-TATTTGACAAGGTTACCTACAAACTGAAACTCCCCATGGCGGAACTATGTGACGAAGTTAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATCAC-----------------AATTTGA--A-------TAT--TAAAGA---------------------------------------------------TAAAGATAAAATAATTCAAG---ATTAACA-------------AA---TTTGGTTAA----A-------------------------------T--TAAATTCCTTAAATTATT-TC---CTAGCTAGGCTACACTGTAAATGAATTT--ATAAGCATGTAAA-AGCGTTTAGT-AGTGG----GCAA-ACAGA----AAATACTCCC--ACTTGCACATTTAATTGATTGCACAATTTAATCAACATTGTTGACCATTTATTT-------T--TG-TTTTTGACAAGGTTACCTACAAGCTGAAACTCCCTGTGGAGGAATTATGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACAGTTCAAA----G--------AATTTAAATAATTAAAAA--TGGCAT------------------------------------------------------------------TACATGTAG-------------------------------------------------------------------------------------T--TCTAC---ATTCCTAGTCCTCACTGTA----AAGAT--GTAAGCATGTTAA-AGTGTTTACA-AGTCG----GCAA-GCAGA----AAATA--------CTTG--CATTTAATTGATTACACAATTTAATCAACGTTGTTGACCATTTCTTT-------TTTTG-TTTCTGACAAGGTTACCTACAAGCTAAAACTCCCCGTGGAGGAATTGTGTCAGGAAGTTAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAAATATAA-----------------------------------------------------------------------------------------------TCAAAAAATAATTTAAT---ATCAAAA---AAAG----GTCCCTGTTATG--------------------------------------------------------T--TC-CATTATCTGCGAATTATCACTGTAAATGCATTTATTCAAGTAC------CTCGCTTAGG-TGTGG----ACATTTCAGA----CAATA--------CTTG--CACTTAATTGATTGCACATTTTAATCAAAGTTGTTTACCATTTTTC-----------TT-ATTTTGACAAGGTTACCTACAAGCTGAAACTCCCCGTGGAGGAGCTCTGCAAGGAGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGGATTTAAAT----AT----------AAAAGTAAA---------------------------------------------------------------------------ACATTTGAA------AAT-------------GTAA---TTTTTATAA----------------------------------------------------T--TT-CAT--TCCCCAAGTCCTCACTGTCCTCTACTTA--GTAATCTTGTAA--GGTGCTTAGGTGGTAG----ACGA-ATGAA----ATATGCATACATACTTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTTACCATTTATT---------------TTTCGACTAGGTTACCTACAAACTGAAACTCCCCGTGGAGCAGCTATGCCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCAGCTATGCCAGG.......	19	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCGTGGAGCAGCTATGCCAGGAA.....	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCAGCTATGCCAGGA......	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCTATGCCAGGAAGTTA.	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................ACAAACTGAAACTCCCCGTG.......................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAACTCCCCGTGGAG....................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAACTCCCCGTGGAGC...................	20	1	1.00	1	1	0	0	0	0	0

droBip1

AC----------------------ATGCAATATAATCAAATGTAT-AAAT------------------------------------------------------------------TCAA-----------------------------------------------------------------------------------------AG--TC-TA---CCATCAAGTCCCCACTGTCCTCTACTTA--GTAAGCTTGTAA--TGTGCTTAGGTGGTAG----ACAA-ACGAAATATACATA--------CTTG--CATTTAATTGATTGCACAATTTAATCAACGTTGTTTACCATTTATT---------------TTTCGACTAGGTTACCTACAAACTGAAACTCCCCGTGGAGCAGCTATGCCAGGAAGTGAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATG-AGTGCCTGAA-CAGAGACAATCAG-GGGGG----AAAAA--------ATTG--CACTTGATTGATTGCACAATTTAATCAAAGTTGTTTACGC---A--T-------T--TC-TCTTCGACAAGGTCACATACAAGCTGAAACTCCCAGTGGACGAGCTGTGCCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACTCCCAGTGGACGAGCTGTGC...........	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CACATACAAGCTGAAACTCCCAGTGGAC....................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGACGAGCTGTGCCAGGA......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAAACTCCCAGTGGACGAGC................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGACGAGCTGTGCCA.........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAAACTCCCAGTGGACGAGCT...............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGACGAGCTGTGCCAGGAA.....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGCTGTGCCAGGAAG....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACAAGCTGAAACTCCCAGTGGACGAGC................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGAAACTCCCAGTGGACGAGCT...............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CACATACAAGCTGAAACTC.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCCAGTGGACGAGCTGTGCCAG........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACTCCCAGTGGACGAGC................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCAGTGGACGAGCTGTGC...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATG-AGTGCCTGAA-CAGAGACAATCAG-GGGGA----AAAAA--------ATTG--CACTTGATTGATTGCACAATTTAATCAAAGTTGTTTACGC---A--T-------T--TC-TCTTCGACAAGGTCACATACAAGCTGAAACTCCCAGTGGACGAGCTGTGCCAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................CACATACAAGCTGAAACTCCCAGTGGA.....................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCAGTGGACGAGCTGTGCCA.........	23	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCCCAGTGGACGAGCTGTG............	24	1	1.00	1	0	1	0	0	0	0

droWil2

AC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----TTT-------C--TT-CTTTTGTCAAGGTAACATATAAACTGAAACTCCCCGTGGATGAGCTTTGCAAGGAAGTTAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAACTCCCCGTGGATGAGC................	22	1	3.00	3	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAACTCCCCGTGGAT....................	20	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGATGAGCTTTGCAAGGA......	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACTCCCCGTGGATGAGC................	21	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCCCCGTGGATGAGCT...............	21	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGATGAGCTTTGCAAGG.......	21	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCCCCGTGGATGAGC................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAACTGAAACTCCCCGTGGATGAGCTT..............	28	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................ATATAAACTGAAACTCCCCGTGGATGAGC................	29	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGTGGATGAGCTTTGCAAGGA......	24	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGTGGATGAGCTTTGCAAGGAA.....	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACTGAAACTCCCCGTGGATGAGC................	24	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGAGCTTTGCAAGG.......	19	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTTTGCAAGGAAGTT..	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACATATAAACTGAAACTC.............................	18	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCGTGGATGAGCTTTGC...........	22	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGAGCTTTGCAAGGAAGTT..	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGATGAGCTTTGCAAG........	19	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCGTGGATGAGCTTTGCAAGG.......	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCCCCGTGGATGAGCTTTGCAA.........	27	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCGTGGATGAGCTTTGCAAG........	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGCTTTGCAAGGAAGTT..	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AACATATAAACTGAAACTCCC...........................	21	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGTGGATGAGCTTTGCAAG........	23	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAACTCCCCGTGGATGAGCTTTGC...........	27	1	1.00	1	0	0	1	0	0

droVir3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTACATACAAATTGAAGCTGCCTGTGGATGAGCTCTGCAAGGAAGTAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTCTGCAAGGAA.....	18	1	3.00	3	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTCTGCAAGGAAGT...	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................ATACAAATTGAAGCTGCCTGT........................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGATGAGCTCTGCAAGGAA.....	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGATGAGCTCTGCAAGGA......	22	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGAGCTCTGCAAGGAA.....	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TTACATACAAATTGAAGCTGCCTGTGGA.....................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGTGGATGAGCTCTGCAAGGA......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGTGGATGAGCTCTGCAA.........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACATACAAATTGAAGCTGCCTGT........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTGTGGATGAGCTCTGCAAGGA......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGGATGAGCTCTGCAAGGAA.....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCTGTGGATGAGCTCTGCA..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGAGCTCTGCAAG........	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACAAATTGAAGCTGCCT..........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTACATACAAATTGAAGCTGC............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACAAATTGAAGCTGCCTGTGG......................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CATACAAATTGAAGCTGCCT..........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCTGCCTGTGGAT....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTACATACAAATTGAAGCTGCCTGT........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTGGATGAGCTCTGC...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGCTCTGCAAGGA......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGCTGCCTGTGGAT....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGCCTGTGGATGAGCT...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGGATGAGCTCTGCA..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGATGAGCTCTGCA..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CATACAAATTGAAGCTGCCTGTG.......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AATTGAAGCTGCCTGTGGA.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACAAATTGAAGCTGCCTGTGGA.....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGTGGATGAGCTCT.............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AATTGAAGCTGCCTGTGGAT....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTCTGCAAGGAAG....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAAGCTGCCTGTG.......................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTTCAGGTTACATACAAGCTGAAGCTGCCGGTGGATGAGCTCTGCAAGGAAGTAAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGATGAGCTCTGCAAGGA......	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAAGCTGCCGGTGGATGAGCTCT.............	27	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGCTCTGCAAGGAA.....	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGTGGATGAGCTCTGCAAGGA......	25	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTGCCGGTGGATGAGCTCTGC...........	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGTGGATGAGCTCTGC...........	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAAGCTGCCGGTGGAT....................	20	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTGGATGAGCTCTG............	18	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGTGGATGAGCTCT.............	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGCTCTGCAAGGAAGT...	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAAGCTGCCGGTGGATGAGCT...............	25	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACATACAAGCTGAAGCTGCCGGT........................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAGCTCTGCAAGGAA.....	20	1	1.00	1	1	0	0	0	0	0

droGri2

ATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATTGTGC----T--TC-TATTTACTTAGGTTACATACAAGCTTAAGCTGCCGGTTGATGAGCTCTGCCAGGAAGTAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCGGTTGATGAGCTCTG............	22	1	2.00	2	0	2
...................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTGCCGGTTGATGAGCTCT.............	23	1	2.00	2	1	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTTGATGAGCTCTG............	18	1	2.00	2	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGTTGATGAGCTCTGCCAGGAA.....	28	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCTTAAGCTGCCGGTT.......................	20	1	1.00	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTTGATGAGCTCTGCCAGGA......	23	1	1.00	1	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTTGATGAGCTCTGCC..........	20	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGGTTGATGAGCTCT.............	19	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGATGAGCTCTGCCAGGAAGTA..	25	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCGGTTGATGAGCTCTGCC..........	24	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTGCCGGTTGATGAGCTCTGCCA.........	27	1	1.00	1	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTCTGCCAGGAAGTAAA	23	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTTAAGCTGCCGGTTG......................	20	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGTTGATGAGCTCTGCCA.........	24	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCGGTTGATGAGCTC..............	20	1	1.00	1	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAGCTCTGCCAGGAAGTAAA	24	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCGGTTGATGAGC................	18	1	1.00	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTCTGCCAGGAAGT...	19	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGTTGATGAGCTCTGCCAG........	23	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCTCTGCCAGGAAGT...	20	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGTTGATGAGCTCTGCC..........	23	1	1.00	1	1	0

dse_1200

scaffold_3:6556400-6556550 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads