dse_120

CAACTATGTATTTATGTAGTGCCAGTACCAGGAGCAGTTGAGTATCGCCGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCAGCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACACTACACGAAGCGACGGCGTGGCCCAGTTTGGGTGCGGGAATAGCCGGATCC *********************************.(((..((.......((((((((.((((((((((((........(((.....)))..........)))))))))))).)))))))).......))..)))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	V114 embryo	V113 male body	M054 female body
..................................................GCCAGGGAAGGGTCGAGTGC.........................................................................................................	20	0	1	34.00	34	31	0	2	1
................................................CGGCCAGGGAAGGGTCGAGTGC.........................................................................................................	22	0	1	14.00	14	13	1	0	0
.................................................GGCCAGGGAAGGGTCGAGTGCG........................................................................................................	22	0	1	8.00	8	7	1	0	0
......................................................................................................CACTCGGCCCATCCCTGGCACA...................................................	22	0	1	5.00	5	4	0	0	1
..................................................GCCAGGGAAGGGTCGAGTGCG........................................................................................................	21	0	1	3.00	3	3	0	0	0
.................................................GGCCAGGGAAGGGTCGAGTG..........................................................................................................	20	0	1	3.00	3	3	0	0	0
.................................................GGCCAGGGAAGGGTCGAGTGC.........................................................................................................	21	0	1	3.00	3	2	1	0	0
................................................CGGCCAGGGAAGGGTCGAGTGCG........................................................................................................	23	0	1	2.00	2	2	0	0	0
......................................................................................................CACTCGGCCCATCCCTGGCAC....................................................	21	0	1	2.00	2	2	0	0	0
.................................................GGCCAGGGAAGGGTCGAGTGCGA.......................................................................................................	23	1	1	2.00	2	2	0	0	0
......................................................................................................CACTCGGCCCATCCCTGGCACC...................................................	22	1	1	2.00	2	2	0	0	0
........................................................................................................CTCGGCCCATCCCTGGCACA...................................................	20	0	1	1.00	1	1	0	0	0
................................................CGGCCAGGGAAGGGTCGAGTGCGC.......................................................................................................	24	1	1	1.00	1	1	0	0	0
................................................CGGCCAGGGACGGGTCGAGTGCG........................................................................................................	23	1	1	1.00	1	0	0	1	0
................................................CGGCCAGGGAAGGGTCGAGTGTA........................................................................................................	23	2	1	1.00	1	1	0	0	0
..................................................GCCAGTGAAGGGTCGAGTGCG........................................................................................................	21	1	1	1.00	1	1	0	0	0
.............................................CGCCGGCCAGGGAAGGGTCGAGTGCGG.......................................................................................................	27	0	1	1.00	1	0	1	0	0
....................................GTTGAGTATCGCCGGCCAG........................................................................................................................	19	0	1	1.00	1	0	1	0	0
..................................................GCCAGGGAAGGGTCGAGT...........................................................................................................	18	0	1	1.00	1	1	0	0	0
..................................................GCCAGGGAAGGGTCGAGTG..........................................................................................................	19	0	1	1.00	1	1	0	0	0
......................................................................................................CACTCGGCCCATCCCTGGCA.....................................................	20	0	1	1.00	1	1	0	0	0
................................................................................................................................................GCACTGTTTGGGTGCGGG.............	18	2	3	0.33	1	1	0	0	0
...........................................................................................................................AATACAAGAAGCGACGGC..................................	18	2	9	0.11	1	0	0	0	1
......................................................................................................................................................TTGGGGTGCGGGAGTACCC......	19	3	12	0.08	1	0	1	0	0
.............................................................................................................................................GTGGCCGAGTTTGGGAGC................	18	2	12	0.08	1	0	0	0	1
..................................................................GTGCGAATCCCTTACCCCC..........................................................................................	19	3	13	0.08	1	0	0	0	1
...............................................................................................................................................AGCACTGTTTGGGTGCGGG.............	19	3	20	0.05	1	0	0	1	0

GTTGATACATAAATACATCACGGTCATGGTCCTCGTCAACTCATAGCGGCCGGTCCCTTCCCAGCTCACGCCTAGGGAACGGGGTCGCCGATAAGCGGACGCGTGAGCCGGGTAGGGACCGTGTGATGTGCTTCGCTGCCGCACCGGGTCAAACCCACGCCCTTATCGGCCTAGG **********************************.(((..((.......((((((((.((((((((((((........(((.....)))..........)))))))))))).)))))))).......))..)))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body
............................................................................GAACGGGGTCGCCGATAAGCG..............................................................................	21	0	1	1.00	1	1

Species	Coordinate	ID	Type	Alignment
droSec2	scaffold_0:20150750-20150924 +	dse_120	confident	CAACTATGTATT--------TATGTAGTGCCAGTACCAGG---------------------AGCAGTTGA-GTATCG--CCGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAGTTTGGGTGCGGGAATAGCCGGATCC---
droSim2	3r:19346285-19346458 +	dsi_145	candidate-rescued	CAACTATGTATT--------TATGTAGTGCTAGTACCAGG---------------------AGCAGTTGA-GTATCG--CCGGCCAGGGAAGGGTCGAATGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCAACCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAGT-TGGGTGCGGGAATAGCCGGATCC---
dm3	chr3R:19809168-19809341 +	dme-mir-9381	Known_mirbase	CAACTATGTATT--------TATATAGTGCTAGTACCAGG---------------------AGCAGTTGA-GTATCG--CCGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGTCCATCCCTGGCTCA--CTACACGAAGCGACGGCGTGGCCCAGT-TGGGTGCGGGAATAGCCGGATCC---
droEre2	scaffold_4820:8247902-8248075 -	der_77	confident	CAACTATTTATG--------TATGTAGTGCTAGTACCAGG---------------------AGCAGTTGA-GTATCG--CGGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACCAAGCGACGACGTGACCCAGC-TGGGTGCGGGAATAGCCGGATCC---
droYak3	3R:26692527-26692707 -	dya_181	candidate	CAACTATTTATGTATGT-ATTATGTAGTGCTAGTACCAGG---------------------AGCAGTTGA-GCATCG--CGGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACAAAGCGACGGCGTTGCCCAGT-TGGGTGCGGGAATAGCCGGATCC---
droEug1	scf7180000409798:584721-584891 -			AGTA--TGCTAT--------TAC-TAGTGCCCGTACCAGG---------------------AACAGTTGA-GGATCG--ACGGTCAGGGAAGGATCGAGTGCGGATCCCTTGCCCTA------------GCGGCTATTCGCCTGCGCACTTGGTCCATCCCTGGCACA--CTACACAAAGTGACGACGTGGCCCAGT-TGGGTGCGAGAATAGCCGGATCC---
droBia1	scf7180000302136:149176-149328 +			CC-----------------------------AGTACCAGG---------------------A-CAGTTGAGGAACTG--AGGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCTCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGACGCGGTCCAGC-TGGGTGCGGGAATAGCCGGATCC---
droTak1	scf7180000415183:24928-25094 -			TA------------------------------GTACCAGAAACAGAGTGGAGGATCCTGG-------GGA-TC-CTG--GGGGCCAGGGAAGGGTCGAGTGCGGATACCCCGCCTCA------------GCGGCTATACGCCTGCGCACTCGGTTCATCCCTGGCACACACTACACGAAGCGACGACGCGGTCCAGT-AGGGTGCGGGAATAGCCGGATTC---
droEle1	scf7180000491008:107070-107228 +			CAACTACACACA--------CACACA-------CACACGAAGCCAG-----G-------------GA--------TG--AGGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCCCA------------GCGACTATGCGCCTGCGCACTCGGCCCATCTCTGGCACA--CTACACG-AGCGACGACGCGGCCCAGT-TGGGTGCGGGAATAGCCGGA------
droRho1	scf7180000779169:92889-93031 -			AAACGATG-----------------------------------------------------------TGA-GGGATG--GAGGCCAGGGCGGGGTCGAGTGCGGATCCCCCGCCCAA------------GCGACTATTCGCCTGCGCACTCGGCTCATCCCTGGCACA--CTACACAAAGTGACGACGTGGTCCAGT-TGGGTGCGGGAATAGCCGGATC----
droFic1	scf7180000453800:1989044-1989200 +			ACGAA----------------------------------------------GGACACCGGGA-CAGCTAATGGATTG--AGGGCCAGGGAAGGACCGAGTGCGGATCCCCCGCCCAA------------GCGACTAATCGCCTCCGCACTTCGTTCATCCCTGGCACA--CTACACGAAGCGACGACGTGGTCCGGT-TGAGTGCGGGATTAGCCGGATCC---
droKik1	scf7180000302778:201811-201965 +			TTGGCAGTTAGT--------TGC-----CA-------------------------------------TCA-TGGCCGGAGGGGCCAGGAAAGAGTCAAGTGCGGACCCCCCGCCCCA------------GCGGTTATCCGTCTGCGCACTTGGCCCGTTCCTGGCACA--CAACACTAAGCGACGACGCGGCGCGAC-TGAGTGCGGGGATATCCGGAGCC---
droAna3	scaffold_13340:7750310-7750441 -			TAGGA-T---------------------------------------------------------------------G---CCTCCATCGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGTCCAGC-TGGGTGTGCGAATATCCAGATCC---
droBip1	scf7180000396708:1098971-1099106 +			TAGAA-T-----------------------------------------------------------------GGTTA---CCACCTTGGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGCCCAGC-TGGGTGTGCGAATATCCGGATTC---
dp5	2:14315831-14315994 +	dps_115	confident	TACATGCATATG--------TAT-----GTTTGTACAAGAAAACAA-----G--------------AAGA-CCCCCA--TCGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCGT-TGGGTGCATGAATATCCGGTTCC---
droPer2	scaffold_0:6116197-6116362 -	dpe_113	candidate-rescued	CATGCATATGTG--------TGTA---TGTTTGTACAAGAAAACAA-----G--------------AAGA-CCCCCA--TCGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCGT-TGGGTGCATGAATATCCGGTTCC---
droWil2	scf2_1100000004902:1079396-1079520 -			AAAAT---------------------------------------------------------------------CAA--ACGCACAGGGAAGGGCCGAATGCGGATGTTCTGCCCAAAGCGTTAAAAGCACGGATATTCACCTGCGCAAGCGGCTCATCCCTAACACA--CTACACTACGTGG-------ATGTGAG-TAGATGTG------------------
droMoj3	scaffold_6540:7087292-7087434 +	dmo_176	candidate-rescued	GAAAACTT------------GCTGT---------------------------------------AATACC-GTTATC--CCTGCTGGGGATGGGGCGCATGTGCATGGTCTGCACTT------------GCGGTTATTCGCATGCACAAGCCCCCCATCCCCA-CACA--CGATACA-CGTGAAGG-------CGAC-TGGAAGTGGGAATAACCGGTTCC---
droGri2	scaffold_15074:6156150-6156307 -			CAAATACGCACACACAACTTGTTGTAATGCCAT----------------------------------CTA-TGACCG---TTGCCAGGGATGGGATGAATGCGCATGGTCTGCGCTA------------GCGGATGTTCGCATGCGCAAGCGTTCCATCCCTAATACA--C---A---CGCGAGGG-------CGGC-TGTGGATGCGAATATCCGGTTCCTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CAACTATGTATT--------TATGTAGTGCCAGTACCAGG---------------------AGCAGTTGA-GTATCG--CCGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAGTTTGGGTGCGGGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................GCCAGGGAAGGGTCGAGTGC..........................................................................................................................	20	1	34.00	34	1	2	0	31
................................................................................CGGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	22	1	14.00	14	0	0	1	13
.................................................................................GGCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	22	1	8.00	8	0	0	1	7
..................................................................................................................................................CACTCGGCCCATCCCTGGCACA--......................................................	22	1	5.00	5	1	0	0	4
..................................................................................GCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	21	1	3.00	3	0	0	0	3
.................................................................................GGCCAGGGAAGGGTCGAGTG...........................................................................................................................	20	1	3.00	3	0	0	0	3
.................................................................................GGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	21	1	3.00	3	0	0	1	2
................................................................................CGGCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	23	1	2.00	2	0	0	0	2
..................................................................................................................................................CACTCGGCCCATCCCTGGCAC.........................................................	21	1	2.00	2	0	0	0	2
.................................................................................GGCCAGGGAAGGGTCGAGTGCGA........................................................................................................................	23	1	2.00	2	0	0	0	2
..................................................................................................................................................CACTCGGCCCATCCCTGGCACC--......................................................	22	1	2.00	2	0	0	0	2
....................................................................................................................................................CTCGGCCCATCCCTGGCACA--......................................................	20	1	1.00	1	0	0	0	1
................................................................................CGGCCAGGGAAGGGTCGAGTGCGC........................................................................................................................	24	1	1.00	1	0	0	0	1
................................................................................CGGCCAGGGAAGGGTCGAGTGTA.........................................................................................................................	23	1	1.00	1	0	0	0	1
...........................................................................CG--CCGGCCAGGGAAGGGTCGAGTGCGG........................................................................................................................	27	1	1.00	1	0	0	1	0
.................................................................GTTGA-GTATCG--CCGGCCAG.........................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................GCCAGGGAAGGGTCGAGT............................................................................................................................	18	1	1.00	1	0	0	0	1
..................................................................................GCCAGGGAAGGGTCGAGTG...........................................................................................................................	19	1	1.00	1	0	0	0	1
..................................................................................................................................................CACTCGGCCCATCCCTGGCA..........................................................	20	1	1.00	1	0	0	0	1

droSim2

CAACTATGTATT--------TATGTAGTGCTAGTACCAGG---------------------AGCAGTTGA-GTATCG--CCGGCCAGGGAAGGGTCGAATGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCAACCCATCCCTGGCACA--CTACACGAAGCGACGGCGTGGCCCAGT-TGGGTGCGGGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................AGCAGTTGA-GTATCG--CCGGCCA..........................................................................................................................................	22	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCAACCCATCCCTGGCAC.........................................................	21	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TGCGCACTCAACCCATCCCTGG............................................................	22	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCAACCCATCCCTGGCACA--......................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCGGATCCCTTGCCCCA------------GCGGCTAT.......................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................GAAGGGTCGAATGCGGAT......................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CGCACTCAACCCATCCCTGGCT..........................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCAACCCATCCCTGGCACT--A.....................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................G---------------------AGCAGTTGA-GTATCG--CCGG.............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GGCCAGGGAAGGGTCGAATGCGGATC.....................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCAACCCATCCCTGGCACA--C.....................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CAGGGAAGGGTCGAATGCGGATC.....................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........T--------TATGTAGTGCTAGTACCAGG---------------------AGCAGT.............................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ACGGCGTGGCCCAGT-TGGGTG....................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTAGTGCTAGTACCAGG---------------------A..................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCAACCCATCCCTGGCACA--C.....................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCAACCCATCCCTGGCACA--......................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCAACCCATCCCTGGCACG--......................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

CAACTATGTATT--------TATATAGTGCTAGTACCAGG---------------------AGCAGTTGA-GTATCG--CCGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGTCCATCCCTGGCTCA--CTACACGAAGCGACGGCGTGGCCCAGT-TGGGTGCGGGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................GCCAGGGAAGGGTCGAGTGC..........................................................................................................................	20	1	122.00	122	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	0	0	1	3	0	0	0	0	0	0	10	0	3	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	8	28	13	6	1	4	8	1	0	0	0	0	0
.................................................................................GGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	21	1	40.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	21	2	0	0	0	3	0	0	0	0	0	0
................................................................................CGGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	22	1	39.00	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	1	2	0	1	1	11	0	1	0	1	4	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	21	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................TGCGCACTCGGTCCATCCCTGG............................................................	22	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GGCCAGGGAAGGGTCGAGTGCGT........................................................................................................................	23	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GGCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	22	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCGGTCCATCCCTGGCTC.........................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................CACTCGGTCCATCCCTGGCT..........................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCGGTCCATCCCTGGCTCA--......................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................GCGACGGCGTGGCCCAGT-TGGGTT....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CCGGCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTCGGTCCATCCCTGGCTCA--......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CCTGCGCACTCGGTCCATCC................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCGGATCCCTTGCCCCA------------GCGGC..........................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GTATT--------TATATAGTGCTAGTACCAG.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCGGTCCATCCCTGGCTT.........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAACTATTTATG--------TATGTAGTGCTAGTACCAGG---------------------AGCAGTTGA-GTATCG--CGGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACCAAGCGACGACGTGACCCAGC-TGGGTGCGGGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................GCCAGGGAAGGGTCGAGTGC..........................................................................................................................	20	1	42.00	42	0	0	2	0	3	37	0
.................................................................................GGCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	22	1	8.00	8	0	0	2	0	1	5	0
.................................................................................GGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	21	1	5.00	5	0	0	0	0	0	5	0
................................................................................GGGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	22	1	4.00	4	0	0	1	1	0	2	0
..................................................................................GCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	21	1	3.00	3	0	0	0	0	1	2	0
................................................................................GGGCCAGGGAAGGGTCGAGTGCG.........................................................................................................................	23	1	3.00	3	0	0	1	0	0	2	0
..............................................................................................................................................TGCGCACTCGGCCCATCCCTGG............................................................	22	1	3.00	3	3	0	0	0	0	0	0
..................................................................................GCCAGGGAAGGGTCGAGTGCGG........................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
.................................................................................GGCCAGGGAAGGGTCGAGTG...........................................................................................................................	20	1	2.00	2	1	0	0	0	1	0	0
..................................................................................GCCAGGGAAGGGTCGAGTG...........................................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................................................CACTCGGCCCATCCCTGGCACA--......................................................	22	1	2.00	2	0	0	0	0	0	2	0
.....ATTTATG--------TATGTAGTGCTAGT..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................GGCCAGGGAAGGGTCGAGTGCGA........................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................GCGCACTCGGCCCATCCCTGG............................................................	21	1	1.00	1	1	0	0	0	0	0	0
.......TTATG--------TATGTAGTGCTAGT..............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
................................................................................GGGCCAGGGAAGGGTCGAGTGA..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................GGGCCAGGGAAGGGTCGAGTGT..........................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......TTTATG--------TATGTAGTGCTAGT..............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................TGCGCACTCGGCCCATCCCTGA............................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................TCGGCCCATCCCTGGCACA--CT....................................................	21	1	1.00	1	1	0	0	0	0	0	0
....................................................................................CAGGGAAGGGTCGAGTGCGGA.......................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................................................GGGCCAGGGAAGGGTCGAGTGCT.........................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........G--------TATGTAGTGCTAGTACCAGG---------------------AGC................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0

droYak3

CAACTATTTATGTATGT-ATTATGTAGTGCTAGTACCAGG---------------------AGCAGTTGA-GCATCG--CGGGCCAGGGAAGGGTCGAGTGCGGATCCCTTGCCCCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACAAAGCGACGGCGTTGCCCAGT-TGGGTGCGGGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................TGCGCACTCGGCCCATCCCTGG............................................................	22	1	7.00	7	0	4	3	0	0	0	0	0	0	0	0
.....................................................................................AGGGAAGGGTCGAGTGCGGATC.....................................................................................................................	22	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0
....................................................................................CAGGGAAGGGTCGAGTGCGGAT......................................................................................................................	22	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................CGCACTCGGCCCATCCCTGGCAC.........................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCGGCCCATCCCTGGCACA--......................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CACTCGGCCCATCCCTGGCAC.........................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCGGCCCATCCCTGGCACA--CT....................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGGGAAGGGTCGAGTGCGGAC......................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................GCACA--CTACACAAAGCGACGGC.....................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................GGGCCAGGGAAGGGTCGAGTGC..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................CTCGGCCCATCCCTGGCACA--......................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................CCAGGGAAGGGTCGAGTGCGGATCC....................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................GCCAGGGAAGGGTCGAGTGC..........................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................CTCGGCCCATCCCTGGCACA--CC....................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................CCAGGGAAGGGTCGAGTGCGGC.......................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................TGCGCACTCGGCCCATCCCTG.............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................GGGCCAGGGAAGGGTCGAGTG...........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GCCAGGGAAGGGTCGAGTG...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................GGCCAGGGAAGGGTCGAGTG...........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................GCACTCGGCCCATCCCTGCAC..........................................................	21	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

AGTA--TGCTAT--------TAC-TAGTGCCCGTACCAGG---------------------AACAGTTGA-GGATCG--ACGGTCAGGGAAGGATCGAGTGCGGATCCCTTGCCCTA------------GCGGCTATTCGCCTGCGCACTTGGTCCATCCCTGGCACA--CTACACAAAGTGACGACGTGGCCCAGT-TGGGTGCGAGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CC-----------------------------AGTACCAGG---------------------A-CAGTTGAGGAACTG--AGGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCTCA------------GCGGCTATTCGCCTGCGCACTCGGCCCATCCCTGGCACA--CTACACGAAGCGACGACGCGGTCCAGC-TGGGTGCGGGAATAGCCGGATCC---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TA------------------------------GTACCAGAAACAGAGTGGAGGATCCTGG-------GGA-TC-CTG--GGGGCCAGGGAAGGGTCGAGTGCGGATACCCCGCCTCA------------GCGGCTATACGCCTGCGCACTCGGTTCATCCCTGGCACACACTACACGAAGCGACGACGCGGTCCAGT-AGGGTGCGGGAATAGCCGGATTC---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAACTACACACA--------CACACA-------CACACGAAGCCAG-----G-------------GA--------TG--AGGGCCAGGGAAGGGTCGAGTGCGGATCCCCCGCCCCA------------GCGACTATGCGCCTGCGCACTCGGCCCATCTCTGGCACA--CTACACG-AGCGACGACGCGGCCCAGT-TGGGTGCGGGAATAGCCGGA------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAACGATG-----------------------------------------------------------TGA-GGGATG--GAGGCCAGGGCGGGGTCGAGTGCGGATCCCCCGCCCAA------------GCGACTATTCGCCTGCGCACTCGGCTCATCCCTGGCACA--CTACACAAAGTGACGACGTGGTCCAGT-TGGGTGCGGGAATAGCCGGATC----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGAA----------------------------------------------GGACACCGGGA-CAGCTAATGGATTG--AGGGCCAGGGAAGGACCGAGTGCGGATCCCCCGCCCAA------------GCGACTAATCGCCTCCGCACTTCGTTCATCCCTGGCACA--CTACACGAAGCGACGACGTGGTCCGGT-TGAGTGCGGGATTAGCCGGATCC---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGGCAGTTAGT--------TGC-----CA-------------------------------------TCA-TGGCCGGAGGGGCCAGGAAAGAGTCAAGTGCGGACCCCCCGCCCCA------------GCGGTTATCCGTCTGCGCACTTGGCCCGTTCCTGGCACA--CAACACTAAGCGACGACGCGGCGCGAC-TGAGTGCGGGGATATCCGGAGCC---	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TAGGA-T---------------------------------------------------------------------G---CCTCCATCGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGTCCAGC-TGGGTGTGCGAATATCCAGATCC---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................G---CCTCCATCGGTGGGTCGATGC...........................................................................................................................	22	2	1.00	2	0	0	0	0	0	2
...................................................................................................................................................................................................GC-TGGGTGTGCGAATATCC.........	19	1	1.00	1	0	0	0	1	0	0

droBip1

TAGAA-T-----------------------------------------------------------------GGTTA---CCACCTTGGGTGGGTCGAGTGCGAATCTCCCGCGCCT------------GCGGATATTCGCCTGCGCACTCGGCCCATCCCTGGTACA--CGACACTGCGTGGCGGC-CGGCCCAGC-TGGGTGTGCGAATATCCGGATTC---	Size	Hit Count	Total Norm	Total
No Reads

dp5

TACATGCATATG--------TAT-----GTTTGTACAAGAAAACAA-----G--------------AAGA-CCCCCA--TCGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCGT-TGGGTGCATGAATATCCGGTTCC---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................TAGGGATGGGTCGAGTGCGCGGT.....................................................................................................................	23	1	6.00	6	0	0	0	0	0	3	2	0	0	1
....................................................................................TAGGGATGGGTCGAGTGCGCGG......................................................................................................................	22	1	5.00	5	0	2	0	0	0	1	2	0	0	0
..............................................................................................................................................CGCGCACTCGGCTCATCCCTACC...........................................................	23	1	3.00	3	0	2	0	1	0	0	0	0	0	0
..............................................................................................................................................CGCGCACTCGGCTCATCCCTAC............................................................	22	1	3.00	3	0	1	0	2	0	0	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGGTCTC..................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGC......................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................CGCACTCGGCTCATCCCTACC...........................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................GCGCACTCGGCTCATCCCTACT...........................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................GCGCACTCGGCTCATCCCT..............................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................G-------GGGGCCGT-TGGGTGCATGAATATCC.........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................GCGCACTCGGCTCATCCCTACC...........................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................CGCACTCGGCTCATCCCTAC............................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................AGGGATGGGTCGAGTGCGCG.......................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCG.........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................GCGCGCACTCGGCTCATCCCTACC...........................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGGTCT...................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................AGGGATGGGTCGAGTGCGT........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGGTCTCC.................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................GGGATGGGTCGAGTGCGCGGTCT...................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGGTC....................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................AGGGATGGGTCGAGTGCGCGGA.....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................AGGGATGGGTCGAGTGCGCGGTC....................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................AGGGATGGGTCGAGTGCGC........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................GGGATGGGTCGAGTGCGCGGT.....................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................GTAGGGATGGGTCGAGTGCGC........................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................GCGTAGGGATGGGTCGTT.............................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

CATGCATATGTG--------TGTA---TGTTTGTACAAGAAAACAA-----G--------------AAGA-CCCCCA--TCGCGTAGGGATGGGTCGAGTGCGCGGTCTCCACCCAA------------GCGGGTATTCGGGCGCGCACTCGGCTCATCCCTACCACA--CCACACGAGTGG-------GGGGCCGT-TGGGTGCATGAATATCCGGTTCC---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................TAGGGATGGGTCGAGTGCGCGGT.....................................................................................................................	23	1	10.00	10	0	0	0	3	4	3
......................................................................................GGGATGGGTCGAGTGCGCGGTC....................................................................................................................	22	1	10.00	10	0	0	0	0	0	10
.....................................................................................AGGGATGGGTCGAGTGCGCGGT.....................................................................................................................	22	1	10.00	10	0	1	0	0	9	0
....................................................................................TAGGGATGGGTCGAGTGCGCGG......................................................................................................................	22	1	6.00	6	0	0	0	2	4	0
......................................................................................GGGATGGGTCGAGTGCGCGGTCTC..................................................................................................................	24	1	4.00	4	0	0	0	0	0	4
.....................................................................................AGGGATGGGTCGAGTGCGCGGTCTC..................................................................................................................	25	1	4.00	4	0	0	0	0	2	2
.......................................................................................GGATGGGTCGAGTGCGCG.......................................................................................................................	18	1	3.00	3	0	0	0	0	0	3
..................................................................................CGTAGGGATGGGTCGAGTGC..........................................................................................................................	20	1	3.00	3	0	0	0	0	3	0
....................................................................................TAGGGATGGGTCGAGTGCGC........................................................................................................................	20	1	2.00	2	0	1	0	0	1	0
......................................................................................GGGATGGGTCGAGTGCGCGGT.....................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
..................................................................................CGTAGGGATGGGTCGAGTGCGCGGTC....................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
.....................................................................................AGGGATGGGTCGAGTGCGCGGTC....................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
....................................................................................TAGGGATGGGTCGAGTGCGCGGC.....................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
......................................................................................GGGATGGGTCGAGTGCGCGGTCT...................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
......................................................................................GGGATGGGTCGAGTGCGC........................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
......................................................................................GGGATGGGTCGAGTGCGCGGTCTCC.................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
.....................................................................................AGGGATGGGTCGAGTGCGCGT......................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................GCGCACTCGGCTCATCCCTACC...........................................................	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................CGCGCACTCGGCTCATCCCTACCA..........................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................CGCGCACTCGGCTCATCCCTAC............................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................AGGGATGGGTCGAGTGCGC........................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...................................................................................GTAGGGATGGGTCGAGTGCGC........................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................GGGATGGGTCGAGTGCGCG.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................ATGGGTCGAGTGCGCGGTC....................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................CGCACTCGGCTCATCCCTACC...........................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................................GATGGGTCGAGTGCGCGGTCTCC.................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................TCGGGCGCGCACTCGGCTC....................................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGGTCT...................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................CGCACTCGGCTCATCCCTACCA..........................................................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................TAGGGATGGGTCGAGTGCGCGGTC....................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................GGGATGGGTCGAGTGCGCGGTCTCCC................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
........................................................................................GATGGGTCGAGTGCGCGGTC....................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................TTCGGGCGCGCACTCGGCTCATCC................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................GGATGGGTCGAGTGCGCGG......................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...................................................................................GTAGGGATGGGTCGAGTGCG.........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................GCGCGCACTCGGCTCATCC................................................................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................GGATGGGTCGAGTGCGCGGTCTC..................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................GGGTCGAGTGCGCGGTCTCC.................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................GCGTAGGGATGGGTCGAGTG...........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................CGCGCACTCGGCTCATCCCTACC...........................................................	23	1	1.00	1	0	0	0	0	1	0
.....................................................................................AGGGATGGGTCGAGTGCGCGGTCTCC.................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................GCGCACTCGGCTCATCCCT..............................................................	19	1	1.00	1	0	0	0	0	1	0

droWil2

AAAAT---------------------------------------------------------------------CAA--ACGCACAGGGAAGGGCCGAATGCGGATGTTCTGCCCAAAGCGTTAAAAGCACGGATATTCACCTGCGCAAGCGGCTCATCCCTAACACA--CTACACTACGTGG-------ATGTGAG-TAGATGTG------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................ACAGGGAAGGGCCGAATGCGGA.......................................................................................................................	22	1	1.00	1	0	0	0	0	1

droMoj3

GAAAACTT------------GCTGT---------------------------------------AATACC-GTTATC--CCTGCTGGGGATGGGGCGCATGTGCATGGTCTGCACTT------------GCGGTTATTCGCATGCACAAGCCCCCCATCCCCA-CACA--CGATACA-CGTGAAGG-------CGAC-TGGAAGTGGGAATAACCGGTTCC---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................TGGGGATGGGGCGCATGTGC........................................................................................................................	20	1	4.00	4	0	0	2	0	1	1
.....................................................................................GGGGATGGGGCGCATGTGCATG.....................................................................................................................	22	1	3.00	3	1	0	1	0	1	0
....................................................................................TGGGGATGGGGCGCATGTGCA.......................................................................................................................	21	1	3.00	3	0	0	1	2	0	0
.....................................................................................GGGGATGGGGCGCATGTGCA.......................................................................................................................	20	1	2.00	2	0	1	0	1	0	0
....................................................................................TGGGGATGGGGCGCATGTGTT.......................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
...................................................................................CTGGGGATGGGGCGCATGTG.........................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................................................................TGGGGATGGGGCGCATGTGCAT......................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................GGGGATGGGGCGCATGTGCAA......................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................CTGGGGATGGGGCGCATGTGC........................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................................................................................GGGGCGCATGTGCATGGTCTG................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

CAAATACGCACACACAACTTGTTGTAATGCCAT----------------------------------CTA-TGACCG---TTGCCAGGGATGGGATGAATGCGCATGGTCTGCGCTA------------GCGGATGTTCGCATGCGCAAGCGTTCCATCCCTAATACA--C---A---CGCGAGGG-------CGGC-TGTGGATGCGAATATCCGGTTCCTAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................AGGGATGGGATGAATGCGCA.......................................................................................................................	20	1	1.00	1	0	1
..............................................................................................................................................TGCGCAAGCGTTCCATCCCTA.............................................................	21	1	1.00	1	1	0

dse_120

scaffold_0:20150800-20150874 +

Known Ortholog

Canonical miRNA

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-49.1	-49.1	-48.8