dse_1104

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+
DNAREP1_DYak	RC	Helitron	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCTCAACTTCCTAGTTTGATCGACTATTAATTTTGATCAAGAATATATATACTTTATATGCTCGGAAACTGGAAAACGAAAATGGAACACAATAATTCAAATTTTTGGAAGCAGGATTTTTAACTATTACAGTTCACAGTTCATATATATATATATCATCATTATATACATAAATATGTTAAAATTACTAATTATTTTTAGGGCTACTATGATCGCTTGAGATCGGATGAAAGTGCTCCTGCCAGTCTGCA ************************************************.............(((..(((.....(((((((.(((........)))..)))))))....)))..)))...........(((........(((((.(((.(((((.......))))).))).)))))........)))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	V113 male body	V114 embryo
......................................................................................................................................................................................................................GCTTGAGATCGGATGAAA...................	18	0	1	1.00	1	1	0	0
......CTACCTAGTTTGAGAGACTA.................................................................................................................................................................................................................................	20	3	3	0.33	1	0	1	0
.......................................................................................................................................................................................................AGGGCTTCTATGATCGCT..................................	18	1	3	0.33	1	0	0	1
......................................................................................................................................................................................................TAGGGCTACGATGAACGAT..................................	19	3	14	0.07	1	1	0	0

GGAGTTGAAGGATCAAACTAGCTGATAATTAAAACTAGTTCTTATATATATGAAATATACGAGCCTTTGACCTTTTGCTTTTACCTTGTGTTATTAAGTTTAAAAACCTTCGTCCTAAAAATTGATAATGTCAAGTGTCAAGTATATATATATATAGTAGTAATATATGTATTTATACAATTTTAATGATTAATAAAAATCCCGATGATACTAGCGAACTCTAGCCTACTTTCACGAGGACGGTCAGACGT ************************************************.............(((..(((.....(((((((.(((........)))..)))))))....)))..)))...........(((........(((((.(((.(((((.......))))).))).)))))........)))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body
.................................................................................................................................................................................................TAGATATCCCGATGCTACT.......................................	19	3	10	0.10	1	1
...........................................................................................................................................................................TGTATACAACTATAATGATTA...........................................................	21	3	16	0.06	1	1
.................................ACTAGTTCTTATATATATGAAA....................................................................................................................................................................................................	22	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_26:17519-17769 -	dse_1104	CCTCAACTTCCTAGTTTGAT-CGACTATTAATTTTGATCAAGAATATATATAC-TTTATATGCTCGGAAACTGG---AAA---ACGAAAATGGAACACAATAATTCAAATTTTTGGAA-------------------------------------------------------------------------GCAGGA-------------------TTTTTAACTATTACAGTT-------------CACAGTTCATATAT---------------------------------------------ATATATAT---CATC-------------ATTATATACAT----AAATATGTTAA--------------AATTACTAATTATTTTTAGGGCTACTATGATCGCTTGAGATCGGATGAAAG---------TGCTCCTGCCAGTCTGCA
droSim2	2r:2343568-2343818 -	dsi_3314	CCTCAACTTCCTAGTTTGAT-CGACTATTGATTTTGATGAAGAATATATATAC-TTTATATGCTCGGAAACTGG---AAA---ACGAAAATGGAATACAATAATTAAAATATTTGGAA-------------------------------------------------------------------------GCAGGA-------------------TTTTTAACTAATATAGTT-------------CACAGTTCATATAT---------------------------------------------ATAAATAT---CATC-------------ATTATATACAT----AAATATGTTAA--------------AATTACTAATTATTTTTAGGGCTACTATGATCGCTTGAAATCGGATGAAAG---------TGCTCCTGCCAGTCTGCA
dm3	chr2L:22130297-22130493 -		AGTC--------AGATCGACTAGGATATTGGTCCTGATCAAGAATATATATAC-CTTAAATGGTCGGAATACGA---AAA--TACGACTAACGGTTATAATAAATT----------------------------CATCA-------------------------------------------------------------------CCACAT--T-----------------------------AC--------------TAGAAGTAATTA-CTATTAAATAGAAAGCGCTTACACTGCTCATAAT----------CTTGTT--------A-----TTACATTT----TATAATGTTTA--------------A-----------------CGAATGCTATCTATG------------------------------------------CTT
droEre2	scaffold_4929:21097775-21097921 +		ATTTAAATGC---------------------TTTTGCATTAAAATTTTTATTT-AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------T---------TTCTAGAT-------------CATAGTTCTTATAA---------------------------------------------------GT------------------------TACAATT----AAATATATTAA--------------AATGAGTAATGATTTTTAGGGCTACTATGATCGCTTGAAGTCTGACGAAAG---------AGCTCCTGCCAGTTTGCA
droYak3	v2_chrUn_4827:478-684 -		T--------------------CGGCTATTGATCCTGATCAAGAATATATATAC-TATTTTTTATCTATTTATTA---TA--------------------ATAGATA---------------------------------------GAACAGTTTACAAAACTGAACTAACTTAAGTAATATAGCACTGGCTGCAGGG-------------------CCTATGGCTATGTTGGTT-------------TACAATTTTTATTT---------------------------------------------ATTAAT---------------------------------------TTATTTTTT--TAAAT-CTAATTAATGGCTAGTTGGTTAAATGATTACTGTGCTCGC-------------------------------------------T
droEug1	scf7180000408755:32925-33033 +		AATTAACTT-------------ATACATCCATTATTATTAATTTTCCATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA--TTTAAATTACT-----------------TTATTTAAGGGCTATTATAATCGCATGATATTTGAAGACTT---------CGC-CCTGCTAGTCTGAA
droBia1	scf7180000301698:30236-30450 -		T--------------------CGTCTAGTGATGCTGATCAAGAATATATATAC-TTTATGGGGTCGGAAAGTCA---TAA---ATGAA------ATAAAAT---------------------------------------------AAAATAAAAGGAT-----ACAAA---------------------------ATATATTTTTCAATATAAGGTTTCA----------------ATGAC--CC------------------AATAAGTA-CTATTA--------CCTTTAAAACGGAGTATAAA----------TATATA--------T-----ATATACCC----TATGATGTTAA--------------A-----------------CGGTACC------------------------TACTTTTATTCTGTAGTATTATGAATACT
droTak1	scf7180000414136:40259-40483 -		C----------TAAATCGAC-CGGCTAGTGACCCTGATCAAGAATATATATAC-TTTATGGGGTCGGAAACGCTTCCTCT---ACGAGTAACGGGTATAAAAATTGAGTTTTTTGATA----------------------------------------------------------------------------AAA-------------------CTTATAATCATTACGGTCTGGTTGATATTCTTGAAGTCCTTATAC---------------------------------------------TTATATAC---TTAA---------------TATTAATGT----CATTATATTCA--------------AGGGTCAGATTATATGTCAGGACAATAAGGTC---------------------------------ATG---CTTGGAA
droEle1	scf7180000490542:7020-7235 +		TGGC-------TAGATCGACTCTCCTAGTGATGCTGATCAAGAATATATATAC-TTTATAGGGTCGGAGGTGTCTCCTTCAC--TGCGT------TGC--------AAACTTCTGACTGAAATTATAATAACCTCTGCAAGGGTATAACAAGAAAGGAA-----GCAAA------------------------------------------------------CTTCGGC-------------AAGCCGAAGTTCATATAT---------------------------------------------ATATATAC---AATA-------------TATATACATAT----ATATATATTGC--------------AAGAATTAAATATT-------------------------------------------------------------TTT
droRho1	scf7180000769384:19756-19934 -		TGGC-------TTGATCGACTCGGCTAGTGATCCTGAACAAGAATATATATAC-TTTATAGGGTCGGAAACTAG---AG-----------TTGTTGATAA------------------------------------------------------------------------------------------------------------------------------------------------------------TATATCAAAATATCAATATATCGAAATTTTTTCATAAAA-----------------AA---TATATATTTATATCGTTATTTTTTATTTGCCCAAATA--TCGGAATTCCG-------------ATATTT------------------------------------------------------------TTTTTA
droFic1	scf7180000453308:27849-27920 +		TTTATATTGC------CTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCAGGGCTACAGTGATCGCCTTAAGTCAGAAGTTCA---------AGCCCCTGCGAGTCTACA
droKik1	scf7180000297836:680-739 +		C----------TAGATCGACTCGGCTATTGATGCTGATCAAGAATATATATAC-TTTATAGGGTCGGAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13266:19439204-19439353 +		GGA--------------------GGCA-CGTTGTTCATTTAGTACCTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCATCCAC---------------------------------------------TTATATCCACGTATATA--------AATAGA-----AA-------TTA--ATTAGCTTACCA----------------TCTTTCTAGGGTTATTGCGACCAGCTGACATCCGATGAGTTCATGCATCTTGCACCTGTAAATCTTCT
droBip1	scf7180000396341:15791-15892 -		TTATAAGTGA---------------------CAA----------TGTGTT--------------------------------------------------------------------------------------------------------------------------------------------------T-------------------TTACT------------------------------------------------------------------------------------------------------------------------------------------AGCTTATCA----------------TTGTTCTAGGGATATTGCGACCAGCTGAAATCTGAAGAGTTCATGCATCTTGCACCTGTAAGCCTTTT
dp5	Unknown_singleton_1038:1323-1372 -		T--------------------CGGCTATTGATGCTGATCAAGAATATATATAC-TTTATAGGGTCGGAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_1:9222315-9222364 +		T--------------------CGGCTATTGATGCTGATCAAGAATATATATAC-TTTATGGGGTCGGAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004909:6033483-6033542 -		C----------TAGATCGACTCGGCTGTTGATCCTGATCAAGAATATATATACCTTTATGGGGTCGGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13050:3413931-3414137 +		C----------TAGATCGATTCGGCTATTGGTGCTGATCAAGAATATATGTAC-TTTATGGGGTCGGAGAATTT---TGA---ACAAATACAATATACCCTTATACCCATTTTT----------------------------------------------------------------------------------------------------------AAT---------------GGGTGCAGGGTATGATAACATATAGAAATAATAAAATATAATAAAAATAACATATATATTATACATCAT----------TATATA--------ATTACA-----------------------------------------------TTTTATTTGGTCTACTATTATAAT------------------------------------------TT
droMoj3	scaffold_6328:2883709-2883860 +		CAA---------------------GTATTCAACTAAAACACCAACATATATAA-TACATATAGTTATAAATCT--------------AAATAAATTACGAAAAAAAAAGTCTAGAGAC-------------------------------------------------------------------------AAAAAA-------------------GTTTTAT---------------GAGTGAAAGATAAGTTTATATAT---------------------------------------------ATATATAT---ATTA-------------CATATATGTAT----GTAT--------------------------------------------------------------------------------------------ATATAAA
droGri2	scaffold_14822:978581-978669 +		AATAA-------TTACAAATT------------------------------------A-----------------------------------------------------TACGGAA-------------------------------------------------------------------------G---TG-------------------TTCCTAACTA--------------------------TTCATATAT---------------------------------------------ATATATAT---TATATA--------T-----ATATATAT----TATAATATG-------------------TAGCAATAAT--------------------------------------------------------------CTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CCTCAACTTCCTAGTTTGAT-CGACTATTAATTTTGATCAAGAATATATATAC-TTTATATGCTCGGAAACTGG---AAA---ACGAAAATGGAACACAATAATTCAAATTTTTGGAA-------------------------------------------------------------------------GCAGGA-------------------TTTTTAACTATTACAGTT-------------CACAGTTCATATAT---------------------------------------------ATATATAT---CATC-------------ATTATATACAT----AAATATGTTAA--------------AATTACTAATTATTTTTAGGGCTACTATGATCGCTTGAGATCGGATGAAAG---------TGCTCCTGCCAGTCTGCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAGATCGGATGAAA............................	18	1	1.00	1	0	0	0	1

droSim2

CCTCAACTTCCTAGTTTGAT-CGACTATTGATTTTGATGAAGAATATATATAC-TTTATATGCTCGGAAACTGG---AAA---ACGAAAATGGAATACAATAATTAAAATATTTGGAA-------------------------------------------------------------------------GCAGGA-------------------TTTTTAACTAATATAGTT-------------CACAGTTCATATAT---------------------------------------------ATAAATAT---CATC-------------ATTATATACAT----AAATATGTTAA--------------AATTACTAATTATTTTTAGGGCTACTATGATCGCTTGAAATCGGATGAAAG---------TGCTCCTGCCAGTCTGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................GAATATATATAC-TTTATATGCTCGGA................................................................................................................................................................................................................................................................................................................................................................................................	26	3	2.00	6	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGA................................................................................................................................................................................................................................................................................................................................................................................................	24	3	1.67	5	0	0	1	0	0	0	0	0	2	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCTTGAAATCGGATGAAAG---------TGC...............	27	2	1.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGATGAAAG---------TGCTCC............	19	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TATGATCGCTTGAAATCGGATGAAAG---------TG................	28	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAC...............................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTTGAAATCGGATGAAAG---------TGC...............	24	2	1.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.........................................GAATATATATAC-TTTATATGCTCGGAAA..............................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAAA..............................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TACTATGATCGCTTGAAATCGGATGAAAG---------..................	29	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TATGATCGCTTGAAATCGGATGAAAG---------TGC...............	29	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATCGGATGAAAG---------TGCTCCTGCC........	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCGGATGAAAG---------TGCTCCTGCCAGTC....	29	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCTTGAAATCGGATGAAAG---------..................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TACTATGATCGCTTGAAATCGGA.................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ACTATGATCGCTTGAAATCGGA.................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................ATATATAC-TTTATATGCTCGGAAACT............................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGCTTGAAATCGGATGAAAG---------TG................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATCGGATGAAAG---------TGCTCCTGCCAGTC....	30	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAAAC.............................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................GAATATATATAC-TTTATATGCTCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................TATATAC-TTTATATGCT....................................................................................................................................................................................................................................................................................................................................................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................GAATATATATAC-TTTATATGCTCGGT................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAAAT.............................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAT...............................................................................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGATTT.............................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAAACA............................................................................................................................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGAATT.............................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................ATATATATAC-TTTATATGCTCGGATTA.............................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

dm3

AGTC--------AGATCGACTAGGATATTGGTCCTGATCAAGAATATATATAC-CTTAAATGGTCGGAATACGA---AAA--TACGACTAACGGTTATAATAAATT----------------------------CATCA-------------------------------------------------------------------CCACAT--T-----------------------------AC--------------TAGAAGTAATTA-CTATTAAATAGAAAGCGCTTACACTGCTCATAAT----------CTTGTT--------A-----TTACATTT----TATAATGTTTA--------------A-----------------CGAATGCTATCTATG------------------------------------------CTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................CA-------------------------------------------------------------------CCACAT--T-----------------------------AC--------------TAGAAGTAATTA-C..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TATTAAATAGAAAGCGCTTACACTGC........................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCCTGATCAAGAATATATATAC-CTTA..........................................................................................................................................................................................................................................................................................................................................................................................................	26	4	1.75	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GAATATATATAC-CTTAAATGGTCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TAAATGGTCGGAATACGA---AAA--TACGAC............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TAAATGGTCGGAATACGA---AAA--TACGA.............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCCTGATCAAGAATATATATAC-CTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TTAAATGGTCGGAATACGA---AAA--..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................TGGTCCTGATCAAGAATATAT...................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCCTGATCAAGAATATATATAC-CTTC..........................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TATTGGTCCTGATCAAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTGATCAAGAATATATATAC-C.............................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ATAATGTTTA--------------A-----------------CGAATGGGT...................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TCCTGATCAAGAATATATATAC-CTTT..........................................................................................................................................................................................................................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CCTGATCAAGAATATATATA................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATTTAAATGC---------------------TTTTGCATTAAAATTTTTATTT-AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------T---------TTCTAGAT-------------CATAGTTCTTATAA---------------------------------------------------GT------------------------TACAATT----AAATATATTAA--------------AATGAGTAATGATTTTTAGGGCTACTATGATCGCTTGAAGTCTGACGAAAG---------AGCTCCTGCCAGTTTGCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

T--------------------CGGCTATTGATCCTGATCAAGAATATATATAC-TATTTTTTATCTATTTATTA---TA--------------------ATAGATA---------------------------------------GAACAGTTTACAAAACTGAACTAACTTAAGTAATATAGCACTGGCTGCAGGG-------------------CCTATGGCTATGTTGGTT-------------TACAATTTTTATTT---------------------------------------------ATTAAT---------------------------------------TTATTTTTT--TAAAT-CTAATTAATGGCTAGTTGGTTAAATGATTACTGTGCTCGC-------------------------------------------T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................TGATCAAGAATATATATAC-TATTTT........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TAAAT-CTAATTAATGGCTAGTTGGTT...............................................................	26	13	0.85	11	0	0	0	0	0	0	0	0	0	0	11
......................................................................................................................................................................TAACTTAAGTAATATAGCACTGGC......................................................................................................................................................................................................................................................................	24	18	0.72	13	0	11	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAACTTAAGTAATATAGCACTGGCTGC...................................................................................................................................................................................................................................................................	27	16	0.50	8	0	1	7	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TAATATAGCACTGGCTGCAGGG-------------------CCTA........................................................................................................................................................................................................................................	26	13	0.38	5	0	4	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGGG-------------------CCTATGGCTATGTTGGTT-------------.............................................................................................................................................................................................................	25	15	0.33	5	0	2	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAACTTAAGTAATATAGCACTGGCTG....................................................................................................................................................................................................................................................................	26	18	0.28	5	0	5	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATAGCACTGGCTGCAGGG-------------------CCTATG......................................................................................................................................................................................................................................	25	12	0.25	3	0	1	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................................TAATATAGCACTGGCTGCAGGG-------------------CCT.........................................................................................................................................................................................................................................	25	15	0.20	3	0	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAACTTAAGTAATATAGCACTGGCTGCA..................................................................................................................................................................................................................................................................	28	16	0.19	3	0	1	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATAGCACTGGCTGCAGGG-------------------CCTATGG.....................................................................................................................................................................................................................................	26	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATAGCACTGGCTGCAGGG-------------------CCTATGGC....................................................................................................................................................................................................................................	27	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AT-CTAATTAATGGCTAGTTGG.................................................................	21	13	0.15	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TAAAT-CTAATTAATGGCTAGTTGGT................................................................	25	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TAGCACTGGCTGCAGGG-------------------CCTATGGC....................................................................................................................................................................................................................................	25	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTT--TAAAT-CTAATTAATGGCTAGT....................................................................	25	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTTTT--TAAAT-CTAATTAATGGCTAGT....................................................................	26	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAAGTAATATAGCACTGGCTGCAGGG-------------------............................................................................................................................................................................................................................................	26	15	0.13	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAAGTAATATAGCACTGGCTGCAGGG-------------------C...........................................................................................................................................................................................................................................	27	15	0.13	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAAGTAATATAGCACTGGCTGCAGG................................................................................................................................................................................................................................................................	25	15	0.13	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................AAGTAATATAGCACTGGCTGC...................................................................................................................................................................................................................................................................	21	16	0.13	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TAATGGCTAGTTGGTTAAATGATTACTG...................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTTAAATGATTACTGTT.................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AATGGCTAGTTGGTTAAATGATTACTG...................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTTAAATGATTACTGT..................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TTAATGGCTAGTTGGTTAAATGATTA......................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CACTGGCTGCAGGG-------------------CCTATGGCTATG................................................................................................................................................................................................................................	26	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CACTGGCTGCAGGG-------------------CCTATGGCTATGT...............................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................T--TAAAT-CTAATTAATGGCTAGTTGGC................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATAGCACTGGCTGCAGGG-------------------CCTATGGC....................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGGCTGCAGGG-------------------CCTATGGCTATGTTGG............................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CTAGTTGGTTAAATGATTACT....................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GGG-------------------CCTATGGCTATGTTGGTT-------------TACAATT......................................................................................................................................................................................................	28	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TAGCACTGGCTGCAGGG-------------------CCTATGGCT...................................................................................................................................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TT--TAAAT-CTAATTAATGGCTA......................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTTTT--TAAAT-CTAATTAATGGCTAGTT...................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGGCTGCAGGG-------------------CCTATGGCTATG................................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TAAAT-CTAATTAATGGCTAGTT...................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TAATATAGCACTGGCTGCAGGG-------------------CC..........................................................................................................................................................................................................................................	24	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTAATATAGCACTGGCTGCAG.................................................................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AATATAGCACTGGCTGCAGGG-------------------CCA.........................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATAGCACTGGCTGCAGGG-------------------............................................................................................................................................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TTAAGTAATATAGCACTGGCTGCAGG................................................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGGG-------------------CCTATGGCTATGTTGGTC-------------.............................................................................................................................................................................................................	25	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGGG-------------------CCTATGGCTATGTTGG............................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TAATATAGCACTGGCTGCAGGG-------------------............................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTGGCTGCAGGG-------------------CCTATGGC....................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................AAGTAATATAGCACTGGCTGCAG.................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TAATATAGCACTGGCTGCAGGG-------------------C...........................................................................................................................................................................................................................................	23	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TAATATAGCACTGGCTGCAGGG-------------------CCTT........................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CAGGG-------------------CCTATGGCTATGTTGG............................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAAGTAATATAGCACTGGCTGCAGGG-------------------CC..........................................................................................................................................................................................................................................	28	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TAGCACTGGCTGCAGGG-------------------CCTT........................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTAATATAGCACTGGCTGC...................................................................................................................................................................................................................................................................	19	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AACTTAAGTAATATAGCACTGGCTGCA..................................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AACTTAAGTAATATAGCACTGGCTGC...................................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................AACTTAAGTAATATAGCACTGGCT.....................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAACTTAAGTAATATAGCACTGG.......................................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TAACTTAAGTAATATAGCACTGGCT.....................................................................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................T--TAAAT-CTAATTAATGGCTAA.....................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AATTAACTT-------------ATACATCCATTATTATTAATTTTCCATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA--TTTAAATTACT-----------------TTATTTAAGGGCTATTATAATCGCATGATATTTGAAGACTT---------CGC-CCTGCTAGTCTGAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T--------------------CGTCTAGTGATGCTGATCAAGAATATATATAC-TTTATGGGGTCGGAAAGTCA---TAA---ATGAA------ATAAAAT---------------------------------------------AAAATAAAAGGAT-----ACAAA---------------------------ATATATTTTTCAATATAAGGTTTCA----------------ATGAC--CC------------------AATAAGTA-CTATTA--------CCTTTAAAACGGAGTATAAA----------TATATA--------T-----ATATACCC----TATGATGTTAA--------------A-----------------CGGTACC------------------------TACTTTTATTCTGTAGTATTATGAATACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C----------TAAATCGAC-CGGCTAGTGACCCTGATCAAGAATATATATAC-TTTATGGGGTCGGAAACGCTTCCTCT---ACGAGTAACGGGTATAAAAATTGAGTTTTTTGATA----------------------------------------------------------------------------AAA-------------------CTTATAATCATTACGGTCTGGTTGATATTCTTGAAGTCCTTATAC---------------------------------------------TTATATAC---TTAA---------------TATTAATGT----CATTATATTCA--------------AGGGTCAGATTATATGTCAGGACAATAAGGTC---------------------------------ATG---CTTGGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGC-------TAGATCGACTCTCCTAGTGATGCTGATCAAGAATATATATAC-TTTATAGGGTCGGAGGTGTCTCCTTCAC--TGCGT------TGC--------AAACTTCTGACTGAAATTATAATAACCTCTGCAAGGGTATAACAAGAAAGGAA-----GCAAA------------------------------------------------------CTTCGGC-------------AAGCCGAAGTTCATATAT---------------------------------------------ATATATAC---AATA-------------TATATACATAT----ATATATATTGC--------------AAGAATTAAATATT-------------------------------------------------------------TTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGGC-------TTGATCGACTCGGCTAGTGATCCTGAACAAGAATATATATAC-TTTATAGGGTCGGAAACTAG---AG-----------TTGTTGATAA------------------------------------------------------------------------------------------------------------------------------------------------------------TATATCAAAATATCAATATATCGAAATTTTTTCATAAAA-----------------AA---TATATATTTATATCGTTATTTTTTATTTGCCCAAATA--TCGGAATTCCG-------------ATATTT------------------------------------------------------------TTTTTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTATATTGC------CTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCAGGGCTACAGTGATCGCCTTAAGTCAGAAGTTCA---------AGCCCCTGCGAGTCTACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C----------TAGATCGACTCGGCTATTGATGCTGATCAAGAATATATATAC-TTTATAGGGTCGGAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGA--------------------GGCA-CGTTGTTCATTTAGTACCTATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCATCCAC---------------------------------------------TTATATCCACGTATATA--------AATAGA-----AA-------TTA--ATTAGCTTACCA----------------TCTTTCTAGGGTTATTGCGACCAGCTGACATCCGATGAGTTCATGCATCTTGCACCTGTAAATCTTCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................TTATTGCGACCAGCTGACATC....................................	21	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGACCAGCTGACATCCG..................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGCTGACATCCGATGAGTTCATG.......................	27	1	1.00	1	0	0	0	0	0	1

droBip1

TTATAAGTGA---------------------CAA----------TGTGTT--------------------------------------------------------------------------------------------------------------------------------------------------T-------------------TTACT------------------------------------------------------------------------------------------------------------------------------------------AGCTTATCA----------------TTGTTCTAGGGATATTGCGACCAGCTGAAATCTGAAGAGTTCATGCATCTTGCACCTGTAAGCCTTTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

T--------------------CGGCTATTGATGCTGATCAAGAATATATATAC-TTTATAGGGTCGGAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................TATATATAC-TTTATAGGGTCGG.................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	1	0	0	0	0	0	0	2	0

droPer2

T--------------------CGGCTATTGATGCTGATCAAGAATATATATAC-TTTATGGGGTCGGAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................TGCTGATCAAGAATATATATAC-TTTATG........................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.45	9	0	9	0	0	0	0
...............................TGCTGATCAAGAATATATATAC-TTT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droWil2

C----------TAGATCGACTCGGCTGTTGATCCTGATCAAGAATATATATACCTTTATGGGGTCGGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............ATCGACTCGGCTGTTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
..............................ATCCTGATCAAGAATATATATACCT.............................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
................CGACTCGGCTGTTGATCCTGATCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0

droVir3

C----------TAGATCGATTCGGCTATTGGTGCTGATCAAGAATATATGTAC-TTTATGGGGTCGGAGAATTT---TGA---ACAAATACAATATACCCTTATACCCATTTTT----------------------------------------------------------------------------------------------------------AAT---------------GGGTGCAGGGTATGATAACATATAGAAATAATAAAATATAATAAAAATAACATATATATTATACATCAT----------TATATA--------ATTACA-----------------------------------------------TTTTATTTGGTCTACTATTATAAT------------------------------------------TT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................TTT----------------------------------------------------------------------------------------------------------AAT---------------GGGTGCAGGGTATGATAACAT.................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAAGAATATATGTAC-TTTATGGGGTC...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	2	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCAAGAATATATGTAC-TTTATGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAAGAATATATGTAC-TTTATGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAAGAATATATGTAC-TTTATGGGGTCG..................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGATCAAGAATATATGTAC-TTTATGG.......................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCTGATCAAGAATATATGTAC-TT............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCTGATCAAGAATATATGTAC-TTT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AAGAATATATGTAC-TTTATGGGGTC...................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAAGAATATATGTAC-TTTATGGGGT....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCAAGAATATATGTAC-TTTATGGGGTC...................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCAAGAATATATGTAC-TTTATGGG......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCAAGAATATATGTAC-TTTATGGGGT....................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CGGCTATTGGTGCTGATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAAGAATATATGTAC-TTTATGG.......................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
C----------TAGATCGATTCGGCTATTGGTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCGATTCGGCTATTGGTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GGCTATTGGTGCTGATCAAGAATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TATGTAC-TTTATGGGGTCGGA................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGATCAAGAATATATGTAC-TTTATG........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TATATGTAC-TTTATGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCAAGAATATATGTAC-TTTA..........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATATATGTAC-TTTATGGGGT....................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TGTAC-TTTATGGGGTCGGAG...............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................AGAATTT---TGA---ACAAAA...........................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................ATATGTAC-TTTATGGGGT....................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TGATCAAGAATATATGTAC-TTTAT.........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GAATATATGTAC-TTTATGGGGTCG..................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCAAGAATATATGTAC-TTT...........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCTGATCAAGAATATATGTAC-TTTAT.........................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAAGAATATATGTAC-TTTATGGGGTCGG.................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

CAA---------------------GTATTCAACTAAAACACCAACATATATAA-TACATATAGTTATAAATCT--------------AAATAAATTACGAAAAAAAAAGTCTAGAGAC-------------------------------------------------------------------------AAAAAA-------------------GTTTTAT---------------GAGTGAAAGATAAGTTTATATAT---------------------------------------------ATATATAT---ATTA-------------CATATATGTAT----GTAT--------------------------------------------------------------------------------------------ATATAAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AATAA-------TTACAAATT------------------------------------A-----------------------------------------------------TACGGAA-------------------------------------------------------------------------G---TG-------------------TTCCTAACTA--------------------------TTCATATAT---------------------------------------------ATATATAT---TATATA--------T-----ATATATAT----TATAATATG-------------------TAGCAATAAT--------------------------------------------------------------CTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_1104

scaffold_26:17569-17719 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads