dse_11

ATTGTCGGAATAAATATAATAATAATCGGAAATATTTAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAAAAGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATAAAATGCTAAATATTACTTATAATTTTGT *********************************...(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))).....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	M054 female body	V115 head	V113 male body
..................................................TTAAGTAGTGGATACAAAAGGCGA..........................................................................................	24	0	1	29096.00	29096	28926	99	69	2
..................................................TTAAGTAGTGGATACAAAAGGCGAT.........................................................................................	25	0	1	2710.00	2710	2692	11	7	0
..................................................TTAAGTAGTGGATACAAAAGGCG...........................................................................................	23	0	1	2196.00	2196	2183	5	8	0
...................................................TAAGTAGTGGATACAAAAGGCGAT.........................................................................................	24	0	1	1998.00	1998	1989	5	4	0
...................................................TAAGTAGTGGATACAAAAGGCGA..........................................................................................	23	0	1	460.00	460	445	14	1	0
..................................................TTAAGTAGTGGATACAAAAGGC............................................................................................	22	0	1	370.00	370	368	0	2	0
..................................................TTAAGTAGTGGATACAAAAGG.............................................................................................	21	0	1	245.00	245	244	0	1	0
..................................................TTAAGTAGTGGATACAAAAGGTGA..........................................................................................	24	1	1	226.00	226	225	0	1	0
..................................................TTAAGTAGTGGATATAAAAGGCGA..........................................................................................	24	1	1	104.00	104	104	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCG...........................................................................................	22	0	1	99.00	99	98	0	1	0
..................................................TTAAGTAGTGGATACAAAAGGCGAA.........................................................................................	25	1	1	96.00	96	96	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGGCGA..........................................................................................	24	1	1	93.00	93	93	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGGGA..........................................................................................	24	1	1	87.00	87	86	0	1	0
...................................................TAAGTAGTGGATACAAAAGGCGATT........................................................................................	25	0	1	83.00	83	83	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGG..........................................................................................	24	1	1	79.00	79	78	1	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGATT........................................................................................	26	0	1	74.00	74	74	0	0	0
..................................................TTAAGTAGTGGATACAAAGGGCGA..........................................................................................	24	1	1	71.00	71	71	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGATA........................................................................................	25	1	1	63.00	63	63	0	0	0
...................................................TAAGTAGTGGATACAAAAGGC............................................................................................	21	0	1	62.00	62	61	0	1	0
..................................................TTAAGTAGTGGATACAAAAGGCGC..........................................................................................	24	1	1	51.00	51	51	0	0	0
..................................................TTAAGTAGTGGGTACAAAAGGCGA..........................................................................................	24	1	1	45.00	45	45	0	0	0
..................................................TTAAGTAGTGGATACACAAGGCGA..........................................................................................	24	1	1	41.00	41	41	0	0	0
..................................................TTAAGAAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	40.00	40	40	0	0	0
..................................................TTAAGTAGTGGATACAAGAGGCGA..........................................................................................	24	1	1	37.00	37	37	0	0	0
..................................................TTAGGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	36.00	36	36	0	0	0
..................................................TTAAGTAGTGGATACAAATGGCGA..........................................................................................	24	1	1	36.00	36	36	0	0	0
...........................................................................................GCATTGTATGGCCTACTTAACT...................................................	22	0	1	35.00	35	31	4	0	0
..................................................TTAAGTAGTGGATACCAAAGGCGA..........................................................................................	24	1	1	33.00	33	33	0	0	0
..................................................TTAAGTAGTGGATACAGAAGGCGA..........................................................................................	24	1	1	33.00	33	33	0	0	0
..................................................TTAAGTGGTGGATACAAAAGGCGA..........................................................................................	24	1	1	31.00	31	31	0	0	0
....................................................AAGTAGTGGATACAAAAGGCGA..........................................................................................	22	0	1	30.00	30	30	0	0	0
..................................................TTAAGTAGTGTATACAAAAGGCGA..........................................................................................	24	1	1	30.00	30	30	0	0	0
..................................................TTAAGTAGTCGATACAAAAGGCGA..........................................................................................	24	1	1	30.00	30	30	0	0	0
..................................................TTAAGCAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	29.00	29	29	0	0	0
..................................................TTAAGTAGTGGACACAAAAGGCGA..........................................................................................	24	1	1	29.00	29	28	1	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGATA........................................................................................	26	1	1	29.00	29	29	0	0	0
..................................................TTAAGTAGTGGATGCAAAAGGCGA..........................................................................................	24	1	1	29.00	29	29	0	0	0
..................................................TTAAGTAGTGGATACGAAAGGCGA..........................................................................................	24	1	1	27.00	27	26	1	0	0
..................................................CTAAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	27.00	27	27	0	0	0
.................................................CTTAAGTAGTGGATACAAAAGGCGA..........................................................................................	25	1	1	26.00	26	26	0	0	0
..................................................TTAAGTAGCGGATACAAAAGGCGA..........................................................................................	24	1	1	25.00	25	25	0	0	0
..................................................TTAAGTACTGGATACAAAAGGCGA..........................................................................................	24	1	1	25.00	25	25	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGT..........................................................................................	24	1	1	24.00	24	24	0	0	0
..................................................TTAAGTATTGGATACAAAAGGCGA..........................................................................................	24	1	1	23.00	23	23	0	0	0
..................................................TTAAGTAGTGGATACAAAA...............................................................................................	19	0	1	22.00	22	22	0	0	0
..................................................TTAAGTAGAGGATACAAAAGGCGA..........................................................................................	24	1	1	22.00	22	22	0	0	0
..................................................TTAACTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	22.00	22	22	0	0	0
..................................................TTAAGTAGTGGATACAAAAGCCGA..........................................................................................	24	1	1	21.00	21	21	0	0	0
..................................................TTGAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	21.00	21	21	0	0	0
..................................................TTAAGTTGTGGATACAAAAGGCGA..........................................................................................	24	1	1	20.00	20	20	0	0	0
..................................................TTAAGTAGTGGATACAAAAG..............................................................................................	20	0	1	20.00	20	20	0	0	0
..................................................TTAAGTAGTGGATACAAAAGTCGA..........................................................................................	24	1	1	19.00	19	19	0	0	0
..................................................TTAAGTAGTGGATACAAAACGCGA..........................................................................................	24	1	1	18.00	18	18	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCAA..........................................................................................	24	1	1	18.00	18	18	0	0	0
..................................................TTAAGTAGTAGATACAAAAGGCGA..........................................................................................	24	1	1	18.00	18	18	0	0	0
..................................................TTATGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	17.00	17	17	0	0	0
..................................................TTAAGTAGTGGATACAAAAAGCGA..........................................................................................	24	1	1	17.00	17	17	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCA...........................................................................................	23	1	1	17.00	17	17	0	0	0
..................................................TTAAGTAGTTGATACAAAAGGCGA..........................................................................................	24	1	1	16.00	16	15	1	0	0
..................................................TTAAGTAGTGGTTACAAAAGGCGA..........................................................................................	24	1	1	15.00	15	15	0	0	0
....................................................AAGTAGTGGATACAAAAGGCGAT.........................................................................................	23	0	1	15.00	15	15	0	0	0
..................................................TTAAGTAGTGGATACAAAGGCG............................................................................................	22	3	1	15.00	15	15	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCCA..........................................................................................	24	1	1	15.00	15	15	0	0	0
..................................................TTAAGTAGTGGATACAAAAGACGA..........................................................................................	24	1	1	14.00	14	13	0	1	0
..................................................TTAAGTAGTGGATACAAAAGGCTA..........................................................................................	24	1	1	14.00	14	14	0	0	0
..................................................TTAAGTAGTGAATACAAAAGGCGA..........................................................................................	24	1	1	14.00	14	14	0	0	0
..................................................TTAAGTAGTGGATACAAAATGCGA..........................................................................................	24	1	1	13.00	13	13	0	0	0
..................................................TTAAGTAGTGCATACAAAAGGCGA..........................................................................................	24	1	1	13.00	13	13	0	0	0
..................................................TTAAGTAGTGGATATAAAAGGCGAT.........................................................................................	25	1	1	13.00	13	13	0	0	0
..................................................TTAAGTAGTGGATACAATAGGCGA..........................................................................................	24	1	1	13.00	13	13	0	0	0
..................................................TCAAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	12.00	12	12	0	0	0
..................................................TTAAGTAATGGATACAAAAGGCGA..........................................................................................	24	1	1	12.00	12	12	0	0	0
..................................................TTTAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	12.00	12	12	0	0	0
..................................................TTAAGTAGTGGATACAAA................................................................................................	18	0	1	12.00	12	12	0	0	0
..........................................................................................CGCATTGTATGGCCTACTTAAC....................................................	22	0	1	11.00	11	11	0	0	0
..................................................TTAATTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	11.00	11	11	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGAC.........................................................................................	25	1	1	11.00	11	11	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGAGA..........................................................................................	24	1	1	11.00	11	11	0	0	0
........................................................AGTGGATACAAAAGGCGA..........................................................................................	18	0	1	10.00	10	10	0	0	0
..................................................TTAAGTAGTGGATACAAGAGGCG...........................................................................................	23	1	1	10.00	10	10	0	0	0
..................................................TTAAGTAGTGGAAACAAAAGGCGA..........................................................................................	24	1	1	10.00	10	10	0	0	0
...................................................TAAGTAGTGGATATAAAAGGCGAT.........................................................................................	24	1	1	10.00	10	10	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGGGAT.........................................................................................	25	1	1	10.00	10	9	0	1	0
..................................................CTAAGTAGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	9.00	9	9	0	0	0
.................................................TTTAAGTAGTGGATACAAAAGGCG...........................................................................................	24	0	1	9.00	9	9	0	0	0
..................................................TTAAGTAGTGGATACAAAGGGCG...........................................................................................	23	1	1	9.00	9	9	0	0	0
..................................................TTAAGTAGTGGATACAAGGCG.............................................................................................	21	3	1	9.00	9	9	0	0	0
..................................................TTAAGTAGTGGATACAAACGGCGA..........................................................................................	24	1	1	8.00	8	8	0	0	0
...................................................TAAGTAGTGGATACAAAAGG.............................................................................................	20	0	1	8.00	8	8	0	0	0
..................................................TTAAGTAGTGGATCCAAAAGGCGA..........................................................................................	24	1	1	8.00	8	8	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGGCG...........................................................................................	23	1	1	8.00	8	8	0	0	0
..................................................TTAAGTAGTGGATACAAAAGCGA...........................................................................................	23	3	1	8.00	8	8	0	0	0
..................................................GTAAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	7.00	7	7	0	0	0
..................................................TTAAGTAGTGGATACAAAGGGC............................................................................................	22	1	1	7.00	7	7	0	0	0
..................................................TTAAGTAGTGGCTACAAAAGGCGA..........................................................................................	24	1	1	7.00	7	7	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGAAA........................................................................................	26	2	1	7.00	7	7	0	0	0
..................................................TTAAATAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	7.00	7	7	0	0	0
...................................................TAAGTAGTGGATACAAAGGGCGAT.........................................................................................	24	1	1	7.00	7	7	0	0	0
..................................................TTAAGTACTGGATACAAAAGGCGAT.........................................................................................	25	1	1	6.00	6	5	0	1	0
..........................................................................................CGCATTGTATGGCCTACTTAACT...................................................	23	0	1	6.00	6	6	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGTGAT.........................................................................................	25	1	1	6.00	6	6	0	0	0
..................................................TTAAGTAGTGGATTCAAAAGGCGA..........................................................................................	24	1	1	6.00	6	6	0	0	0
..................................................TTAAGTAGTGGATACAAAGGC.............................................................................................	21	2	1	6.00	6	6	0	0	0
..................................................TTAAGTAGTGGATACTAAAGGCGA..........................................................................................	24	1	1	6.00	6	6	0	0	0
..................................................TTAAGTAGTGGATACACAAGGCGAT.........................................................................................	25	1	1	6.00	6	6	0	0	0
..................................................TTAAGTCGTGGATACAAAAGGCGA..........................................................................................	24	1	1	6.00	6	6	0	0	0
.....................................................AGTAGTGGATACAAAAGGCGA..........................................................................................	21	0	1	6.00	6	6	0	0	0
..................................................TTAAGTACTGGATACAAAAGGCG...........................................................................................	23	1	1	6.00	6	6	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGGCGAT.........................................................................................	25	1	1	6.00	6	6	0	0	0
...................................................TAGGTAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	6.00	6	6	0	0	0
...................................................TAAGTAGTGGATAAAAAAGGCGAT.........................................................................................	24	1	1	6.00	6	6	0	0	0
..................................................TTAGGTAGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	5.00	5	5	0	0	0
..................................................TTAAGTAGTGGATACGAAAGGCGAT.........................................................................................	25	1	1	5.00	5	5	0	0	0
...................................................TAAGTACTGGATACAAAAGGCGAT.........................................................................................	24	1	1	5.00	5	5	0	0	0
..................................................TTAAGTAGTGGATACAAAGGGCGAT.........................................................................................	25	1	1	5.00	5	5	0	0	0
...................................................TTAGTAGTGGATACAAAAGGCGA..........................................................................................	23	1	1	5.00	5	5	0	0	0
..................................................TTAAGAAGTGGATACAAAAGGCG...........................................................................................	23	1	1	5.00	5	5	0	0	0
..................................................TTAAGTAGTGGATATAAAAGGCG...........................................................................................	23	1	1	5.00	5	5	0	0	0
..................................................TTAAGTAGTCGATACAAAAGGCG...........................................................................................	23	1	1	4.00	4	4	0	0	0
...................................................TAAGTAGTGGATGCAAAAGGCGAT.........................................................................................	24	1	1	4.00	4	4	0	0	0
.......................................................TAGTGGATACAAAAGGCGA..........................................................................................	19	0	1	4.00	4	4	0	0	0
...................................................TAAGTAGTGGATACAAAA...............................................................................................	18	0	1	4.00	4	4	0	0	0
...................................................TAAGTAGTGGATACAAAAGGTGA..........................................................................................	23	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTGGATACCAAAGGCG...........................................................................................	23	1	1	4.00	4	4	0	0	0
..................................................TTCAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCC...........................................................................................	23	1	1	4.00	4	4	0	0	0
...................................................TAAGTAGTGGATACAGAAGGCGAT.........................................................................................	24	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTGGATACATAAGGCGA..........................................................................................	24	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGGT.........................................................................................	25	1	1	4.00	4	4	0	0	0
..................................................TTACGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTGGATACAGAAGGCGAT.........................................................................................	25	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTGCATACAAAAGGCG...........................................................................................	23	1	1	4.00	4	4	0	0	0
...................................................TAACTAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	4.00	4	4	0	0	0
...................................................TAAGTAGTGGATACAAAAGGGGAT.........................................................................................	24	1	1	4.00	4	4	0	0	0
..................................................TTAGGTAGTGGATACAAAAGGCG...........................................................................................	23	1	1	4.00	4	4	0	0	0
..................................................TTAAGTAGTTGATACAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATAGAAAAGGCGA..........................................................................................	24	1	1	3.00	3	3	0	0	0
....................................................TAGTAGTGGATACAAAAGGCGAT.........................................................................................	23	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGCGGATACAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
..................................................TTAAGGAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGGTACAAAAGGCG...........................................................................................	23	1	1	3.00	3	3	0	0	0
...................................................TAAGTAGTGGATACCAAAGGCGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGGGGA..........................................................................................	24	2	1	3.00	3	3	0	0	0
...................................................TAAGTAGTGGATACAAAAGGTGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
...................................................TAAGAAGTGGATACAAAAGGCGA..........................................................................................	23	1	1	3.00	3	3	0	0	0
...........................................................................................GCATTGTATGGCCTACTTAAC....................................................	21	0	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATACAACAGGCGA..........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGAGGATACAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
...................................................TAAGTAGTGGTTACAAAAGGCGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATGCAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGGGGATACAAAAGGCGA..........................................................................................	24	1	1	3.00	3	3	0	0	0
...................................................TAAGTAGTGGGTACAAAAGGCGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTGAGTAGTGGATACAAAAGGC............................................................................................	22	1	1	3.00	3	3	0	0	0
..................................................TTAAGTTGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGTG...........................................................................................	23	1	1	3.00	3	3	0	0	0
..................................................ATAAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGGTACAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
................................................TCTTAAGTAGTGGATACAAAAGGCGA..........................................................................................	26	2	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATACAAAAGTCG...........................................................................................	23	1	1	3.00	3	3	0	0	0
..................................................TTAAGTATTGGATACAAAAGGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
...................................................TAAGTAGTGGATACAAAAGCCGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATACAAAATGCGAT.........................................................................................	25	1	1	3.00	3	3	0	0	0
...................................................TAAGTAGTAGATACAAAAGGCGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
..................................................CTAAGTAGTGGATACAAAAGGCG...........................................................................................	23	1	1	3.00	3	3	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGATTT.......................................................................................	27	0	1	3.00	3	3	0	0	0
...................................................TAAGTAGTCGATACAAAAGGCGAT.........................................................................................	24	1	1	3.00	3	3	0	0	0
.....................................................TTAAGTGGATACAAAAGGCGA..........................................................................................	21	3	5	2.80	14	14	0	0	0
...................................................TAAGTAGTGGATACATAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGTTACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTCGTGGATACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGCGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTACGTAGTGGATACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAAGTCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
............................................................................................CATTGTATGGCCTACTTAACT...................................................	21	0	1	2.00	2	2	0	0	0
.................................................CTTAAGTAGTGGATACAAAAGGCGAT.........................................................................................	26	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGAATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGTGATT........................................................................................	26	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACATAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGGTACAAAAGGC............................................................................................	22	1	1	2.00	2	2	0	0	0
........................................................AGTGGATACAAAAGGCGAT.........................................................................................	19	0	1	2.00	2	2	0	0	0
..................................................TTAAGTGGTGGATACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TTAGTAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGCATACAAAAGGCGA..........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TTAGTAGTGGATACAAAAGGCG...........................................................................................	22	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAGGGCGA..........................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAGG..............................................................................................	20	1	1	2.00	2	2	0	0	0
..................................................TTAAGTTGTGGATACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGG.............................................................................................	21	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAGGCGG...........................................................................................	23	3	1	2.00	2	2	0	0	0
.................................................CTTAAGTAGTGGATACAAAAGGCG...........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATATATAAGGCGA..........................................................................................	24	2	1	2.00	2	2	0	0	0
....................................................AAGTAGTGGATACAAAAGGC............................................................................................	20	0	1	2.00	2	2	0	0	0
..................................................TTATGTAGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACCAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAAGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATGCAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGCAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TAAAGTAGTGGATACAAAAGGCGA..........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGGAGA..........................................................................................	24	2	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGATC........................................................................................	26	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAGAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTGTTGGATACAAAAGGCGA..........................................................................................	24	2	1	2.00	2	2	0	0	0
..................................................TTAAGCAGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
...................................................TAAGTGGTGGATACAAAAGGCGA..........................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTAGATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGTT.........................................................................................	24	1	1	2.00	2	1	1	0	0
..................................................TTAAGTAGTGGATACACAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGGT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGACACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGGG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAGGGC............................................................................................	21	1	1	2.00	2	2	0	0	0
...................................................TAAGAAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
...................................................TAAGTTGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAGAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGACACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACACAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATAAACAAGGCGG..........................................................................................	24	3	1	2.00	2	2	0	0	0
..................................................TTAAGTAATGGATACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................CTAAGTAGTGGATACAAACGGCGA..........................................................................................	24	2	1	2.00	2	0	2	0	0
.................................................CTTAAGTAGTGGATACAAAAGGGGA..........................................................................................	25	2	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGATC........................................................................................	25	1	1	2.00	2	2	0	0	0
...................................................TAATTAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGACACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TTAAGAAGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGAC.........................................................................................	24	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATCCAAACGGCGA..........................................................................................	24	2	1	2.00	2	2	0	0	0
..................................................TTAAGTAGCGGATACAAAAGGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACGAAAGGCGA..........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TCAGTAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	2.00	2	2	0	0	0
......................................................GTAGTGGATACAAAAGGCGA..........................................................................................	20	0	1	2.00	2	2	0	0	0
......................................................TTAGTGGATACAAAAGGCGA..........................................................................................	20	1	1	2.00	2	2	0	0	0
..................................................TTAAGAAGTGGATACCAAAGGCGA..........................................................................................	24	2	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAGCCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTGGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
....................................................AAGTAGTGGATACAAAAGG.............................................................................................	19	0	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGCATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAACTAGTGGATACAAAAGGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
.......................................................TAGTGGATACAAAAGGCGAT.........................................................................................	20	0	1	2.00	2	2	0	0	0
......................................................TAAGTGGATACAAAAGGCGATA........................................................................................	22	3	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAGTCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAACGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAAGCG...........................................................................................	23	1	1	2.00	2	2	0	0	0
...................................................TAAGTAGTGGATACACAAGGCGATA........................................................................................	25	2	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAACGCGAT.........................................................................................	25	1	1	2.00	2	2	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGCAGT.......................................................................................	27	3	1	1.00	1	1	0	0	0
..................................................CTAAGTAGTGGATACAAAAGGCGC..........................................................................................	24	2	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGG..........................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGAAACAAAAGGCT...........................................................................................	23	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGGGGATACAAAAGGCGAT.........................................................................................	25	1	1	1.00	1	1	0	0	0
...................................................TAAGTAGTAGATACAAAAGGCGA..........................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGAATACAAAAGGCGAT.........................................................................................	25	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTTGATACAAAAGGCGT..........................................................................................	24	2	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCGATTC.......................................................................................	26	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTTGATACAAAAGGTGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTTGATACAAAAGG.............................................................................................	21	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACTAAAGGTGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTCAGTAGTGGATACAACAGGCGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGTTACAAAAGGC............................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TTTAGTAGTGGATACAAAAGG.............................................................................................	21	1	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGAAACAAAAGGCGAT.........................................................................................	24	1	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAAGGAGA..........................................................................................	23	1	1	1.00	1	1	0	0	0
....................................................AAGTAGTGGATACAAAAGGTGAT.........................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAACAGGCG...........................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TTAAGTACTGGATACAAAAGGCCA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATCCCAACGGCGA..........................................................................................	24	3	1	1.00	1	1	0	0	0
..................................................TTAAGTATTGGATACAAAGGGCGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAAAGGATACAAAAGGCGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCAT..........................................................................................	23	2	1	1.00	1	1	0	0	0
.................................................CTTAAGTAGTGGATACAAAAGGTGA..........................................................................................	25	2	1	1.00	1	1	0	0	0
.................................................CTTAAGTAGTGGATACCAAAGGCGA..........................................................................................	25	2	1	1.00	1	1	0	0	0
..................................................TTAAGTATTGGACACAAAAGGCGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAGGTAGTGGATACAAAAGGTGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAATGCGA..........................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATAAAAAAGACGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAATGCGATT........................................................................................	25	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGACC........................................................................................	26	2	1	1.00	1	1	0	0	0
..................................................TTGAGTAGTGGATACAAAAGG.............................................................................................	21	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCGAAT........................................................................................	26	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATGCAAAAGGCGATT........................................................................................	26	1	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACAAAAGGCCAT.........................................................................................	24	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAAACGGGGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATAAACAAGGCG...........................................................................................	23	2	1	1.00	1	1	0	0	0
...................................................TAAGTAGTGGATACTAAAGGCGA..........................................................................................	23	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAAAAAGCCA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTGAGTAGTGGATATAAAAGGCGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGCGGATACAAAAGGC............................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATCCAAAAGGTGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
.........................................................GTGGATACAAAAGGCGAT.........................................................................................	18	0	1	1.00	1	1	0	0	0
......................................................TAAGTGGATACAAAAGGCGA..........................................................................................	20	2	2	1.00	2	2	0	0	0
..................................................TTAAGTAGTCGATACAAAAGG.............................................................................................	21	1	1	1.00	1	1	0	0	0
..................................................TTAAGAAGTGGATACAAAAGGTGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATCAAAAAGGCGA..........................................................................................	24	2	1	1.00	1	1	0	0	0
......................................................TTAGTGGATACAAAAGGCGAT.........................................................................................	21	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATATAAAAGGC............................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TTAAGTATTGGATACAAAAGGCG...........................................................................................	23	1	1	1.00	1	1	0	0	0
...................................................TATGTAGTGGATACAAAAGGCGAT.........................................................................................	24	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAAAAGGCCAT.........................................................................................	25	1	1	1.00	1	1	0	0	0
..........................................................TGGATACAAAAGGCGAAT........................................................................................	18	1	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACCAAAGGCGG..........................................................................................	24	2	1	1.00	1	1	0	0	0
..................................................TTAAGTAGTGGATACAGAAGGC............................................................................................	22	1	1	1.00	1	1	0	0	0
..................................................TCAAGTAGTGGATACAAAAGGCG...........................................................................................	23	1	1	1.00	1	1	0	0	0

TAACAGCCTTATTTATATTATTATTAGCCTTTATAAATCTTTAATATATAAATTCATCACCTATGTTTTCCGCTAAACTATATTTTCATAGCGTAACATACCGGATGAATTGATCGACTAAAACATAAGGTTGTATTTTACGATTTATAATGAATATTAAAACA **********************************...(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))).....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	M054 female body
.........................................................................................AGCGTAACATAGGTGATGAATT.....................................................	22	3	1	4.00	4	3	1
........................................................................................TAGCGTAACATAGGTGATGAATT.....................................................	23	3	1	2.00	2	2	0
..........................................................................................GCGTAACATAGGTGATGAATT.....................................................	21	3	4	0.50	2	2	0

Species	Coordinate	ID	Type	Alignment
droSec2	scaffold_3:14415-14578 -	dse_11	confident	ATTGTCGGAA---TAAATATAATAATAAT--C-----GG-AAATA-----TT-TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAA--A-AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATA----AAA-TG-------------CTA------------------A--ATATTA--CTTATAATTTTGT
droSim2	2l:13334118-13334281 -	dsi-mir-1002	Known_mirbase	ATTGTCGGAA---TAAATATAATAATAAT--C-----GG-AAATA-----TT-TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAA--A-AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATA----AAA-TG-------------CTA------------------A--ATATTA--CTTATAATTTTGT
dm3	chr2L:13747570-13747714 -	dme-mir-1002	Known_mirbase	ATTGTA----------------------T--C-----GG-AATTA-----AT-TAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGATTTGATATAA--A-AGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCCCAACATA----ATA-GG-------------TTA------------------A--AAATTA--ATTCGAATTTTGT
droEre2	scaffold_4929:11719029-11719141 +	der_145	confident	TAATTGA----------------------------------------------TCAAAATTATATATCTAAGTAGTGGATACAAACGGCGATTTGGTATAA--A-AATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCCCAACGTA----CAA-A---------------------------------------------------------GA
droYak3	2L:10159907-10160033 -	dya_24	confident	ATTATGCTTC----GA------------------------AGTT-----TTA-AAAAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTG-ATATAA--A-AATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCCCAACTTACATCAAT-----------------------------------------------------------TA
droEug1	scf7180000409452:319574-319721 -			AATTAAT------------------------------------T-----TTA-CAAAAATCATATACTTAAGTAGTGGATACAAATTGCGATTTTAA--AA--T-ATACTCGCATTGTATGGCCTACTTAGTTAGTTGATTTTTAACACCGTC-------AAGATAAAAGGCAAGTGAA-------------------TG-AA--ATTAAGTCAAGAAATTTGT
droBia1	scf7180000302408:2583553-2583704 +			AATTTCAATATTT---TAAAA-------TAT----TTAG------A--ATTT-AGAAAATCATTTGTTTAAGTAGTGCATACAAAAGGCGATTTGCTATCA--A-ACGTTCGCATTGTATGCCCTACTTAACTAGTTGGTTTTTCTAAGCAACATT----AAAATTATTG-----------------------------------ATTA--C-----TAATTGT
droTak1	scf7180000414072:20322-20470 +			ATTGTT----------------------T--T-----TG-AAATT-----TC-AAAAAATCATACATTTAAGTAGTGGATACAAAAGGCGATTTGCTAATA-AA-ATGTTCGCATTGTATGGCCTACTTAACTAACTGATTTTTTTTAACAACATT----AAAATAACTG----CTGAA-------------------T------ACAA----AAGATAATAAT
droEle1	scf7180000491338:1357011-1357127 -			AAATACAATAAAA---GATTA-------TGT----TTTG------T---TTA-AAAAAATCATGTATTTAAGTAGTGGATACAAAAGGCGATTTACAAAAT-AA-ATGTTCGCATTGTATGCCCTACTTAACTAGCAGGTTTT---------------------------------------------------------------------------------
droRho1	scf7180000780107:332604-332722 +			AAGTAGATTA----------ATAACTAAAAT----TCTG------TT-ATAA-AAAAAATCATATGTTTAAGTAGTGGATACAAATGGCGACTTGCAAACG-AA-ATGTTCGCATTGTATGTCCTACTTAAGTAGCTGATTTT---------------------------------------------------------------------------------
droFic1	scf7180000448796:307-447 +			AGTGTTATAT-------------------------TTTTAACATA-----TT-AAAAAATTATACGTTTAAGTAGTGGATACAAAAGGCGATTTGTATAAC-GA-AAGTTCGCATTGTATGTCCTACTTAAGTGGCTGATTTTTTCAAGCAACATC----AAA----------------------------------------AAATTG--TTTAGA----GGT
droKik1	scf7180000302236:232129-232252 +			CCTGACCTAA-AATAA------GGACATA--CATATCTG------TTAATTA-AGAAAATCGTATGTTTAAGTAGTGGATACAA-CGGCGATTGAACACAA-TA-ATCTTCGCAGTGTGTTACCTACTTAATTAGTCGATTTT---------------------------------------------------------------------------------
droAna3	scaffold_12943:1815357-1815529 -	dan_30	confident	ATTTCAAGCC----AAAGTTTTC-ATAAA--T--ATCTG------T---GCAAACTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGACTAAATAAAA--T-ATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATCCAT---TACA-AA-------------TTAAATACAATTTTAAG--TT-GA--A-------GTGATTATTGT
droBip1	scf7180000396728:1424319-1424487 +			ATCTTCCAAA---CAATATTA-------TCT----TCTTAATATA-----CAACTTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGATTCATTA--------CATTCGCAATGTATGGCTTACATAACTAGTTGATTTTTGAAGTCATCCAT---TCCA-AAG------------TTAATTTCTATCTTATATG--TGA--A-------GTGTGTATTGT
dp5	4_group1:1722892-1723014 +	dps-mir-1002	Known_mirbase	ACTGTGCGAT---TAGAGTTATCAATAGG--CAGGTCCT------C---TCA-AAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAA-GA-ACTTTCGCATTGTGTGACCTACTTAAATGCTCGATT-----------------------------------------------------------------------------------
droPer2	scaffold_5:3483479-3483601 -	dpe_57	confident	ACTGTGCGAT---TAGAGTTATCAATAGG--CAGGTCCT------C---TCA-AAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAA-GA-ACTTTCGCATTGTGTGACCTACTTAAATGCCCGATT-----------------------------------------------------------------------------------
droWil2	scf2_1100000004585:545424-545543 +	dwi_25	confident	ATTGAAAAAG--------TGTTCATTTG------ATCTG------GTCA-TT-GAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGATTCGTATTCCATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTT---------------------------------------------------------------------------------
droGri2	scaffold_15126:8057200-8057339 -	dgr_79	candidate	ATGCAAACTG---TAAA--TATTTATAAT--C-----AC------TGTA-T--TGAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTTCAT--A--A-AGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTAAG---------------A-TA-------------CTG------------------T--AAATTA--TGAAT------AA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

ATTGTCGGAA---TAAATATAATAATAAT--C-----GG-AAATA-----TT-TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAA--A-AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATA----AAA-TG-------------CTA------------------A--ATATTA--CTTATAATTTTGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................TTAAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	24	1	29096.00	29096	99	2	28926	69
...................................................................TTAAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	25	1	2710.00	2710	11	0	2692	7
...................................................................TTAAGTAGTGGATACAAAAGGCG......................................................................................................................................	23	1	2196.00	2196	5	0	2183	8
....................................................................TAAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	24	1	1998.00	1998	5	0	1989	4
....................................................................TAAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	23	1	460.00	460	14	0	445	1
...................................................................TTAAGTAGTGGATACAAAAGGC.......................................................................................................................................	22	1	370.00	370	0	0	368	2
...................................................................TTAAGTAGTGGATACAAAAGG........................................................................................................................................	21	1	245.00	245	0	0	244	1
....................................................................TAAGTAGTGGATACAAAAGGCG......................................................................................................................................	22	1	99.00	99	0	0	98	1
...................................................................TTAAGTAGTGGATACAAAAGGCGAA....................................................................................................................................	25	1	96.00	96	0	0	96	0
....................................................................TAAGTAGTGGATACAAAAGGCGATT...................................................................................................................................	25	1	83.00	83	0	0	83	0
...................................................................TTAAGTAGTGGATACAAAAGGCGG.....................................................................................................................................	24	1	79.00	79	1	0	78	0
...................................................................TTAAGTAGTGGATACAAAAGGCGATT...................................................................................................................................	26	1	74.00	74	0	0	74	0
....................................................................TAAGTAGTGGATACAAAAGGCGATA...................................................................................................................................	25	1	63.00	63	0	0	63	0
....................................................................TAAGTAGTGGATACAAAAGGC.......................................................................................................................................	21	1	62.00	62	0	0	61	1
...................................................................TTAAGTAGTGGATACAAAAGGCGC.....................................................................................................................................	24	1	51.00	51	0	0	51	0
...............................................................................................................GCATTGTATGGCCTACTTAACT...........................................................................................	22	1	35.00	35	4	0	31	0
.....................................................................AAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	22	1	30.00	30	0	0	30	0
...................................................................TTAAGTAGTGGATACAAAAGGCGATA...................................................................................................................................	26	1	29.00	29	0	0	29	0
...................................................................TTAAGTAGTGGATACAAAAGGCGT.....................................................................................................................................	24	1	24.00	24	0	0	24	0
...................................................................TTAAGTAGTGGATACAAAA..........................................................................................................................................	19	1	22.00	22	0	0	22	0
...................................................................TTAAGTAGTGGATACAAAAG.........................................................................................................................................	20	1	20.00	20	0	0	20	0
...................................................................TTAAGTAGTGGATACAAAAGGCA......................................................................................................................................	23	1	17.00	17	0	0	17	0
.....................................................................AAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	23	1	15.00	15	0	0	15	0
...................................................................TTAAGTAGTGGATACAAA...........................................................................................................................................	18	1	12.00	12	0	0	12	0
..............................................................................................................CGCATTGTATGGCCTACTTAAC............................................................................................	22	1	11.00	11	0	0	11	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAC....................................................................................................................................	25	1	11.00	11	0	0	11	0
.........................................................................AGTGGATACAAAAGGCGA.....................................................................................................................................	18	1	10.00	10	0	0	10	0
..................................................................TTTAAGTAGTGGATACAAAAGGCG......................................................................................................................................	24	1	9.00	9	0	0	9	0
....................................................................TAAGTAGTGGATACAAAAGG........................................................................................................................................	20	1	8.00	8	0	0	8	0
...................................................................TTAAGTAGTGGATACAAAAGCGA......................................................................................................................................	23	1	8.00	8	0	0	8	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAAA...................................................................................................................................	26	1	7.00	7	0	0	7	0
..............................................................................................................CGCATTGTATGGCCTACTTAACT...........................................................................................	23	1	6.00	6	0	0	6	0
......................................................................AGTAGTGGATACAAAAGGCGA.....................................................................................................................................	21	1	6.00	6	0	0	6	0
........................................................................TAGTGGATACAAAAGGCGA.....................................................................................................................................	19	1	4.00	4	0	0	4	0
....................................................................TAAGTAGTGGATACAAAA..........................................................................................................................................	18	1	4.00	4	0	0	4	0
...................................................................TTAAGTAGTGGATACAAAAGGCC......................................................................................................................................	23	1	4.00	4	0	0	4	0
...............................................................................................................GCATTGTATGGCCTACTTAAC............................................................................................	21	1	3.00	3	0	0	3	0
...................................................................TTAAGTAGTGGATACAAAAGGCGATTT..................................................................................................................................	27	1	3.00	3	0	0	3	0
................................................................................................................CATTGTATGGCCTACTTAACT...........................................................................................	21	1	2.00	2	0	0	2	0
.........................................................................AGTGGATACAAAAGGCGAT....................................................................................................................................	19	1	2.00	2	0	0	2	0
.....................................................................AAGTAGTGGATACAAAAGGC.......................................................................................................................................	20	1	2.00	2	0	0	2	0
...................................................................TTAAGTAGTGGATACAAAAGGCGATC...................................................................................................................................	26	1	2.00	2	0	0	2	0
....................................................................TAAGTAGTGGATACAAAAGGCGATC...................................................................................................................................	25	1	2.00	2	0	0	2	0
....................................................................TAAGTAGTGGATACAAAAGGCGAC....................................................................................................................................	24	1	2.00	2	0	0	2	0
.......................................................................GTAGTGGATACAAAAGGCGA.....................................................................................................................................	20	1	2.00	2	0	0	2	0
.....................................................................AAGTAGTGGATACAAAAGG........................................................................................................................................	19	1	2.00	2	0	0	2	0
........................................................................TAGTGGATACAAAAGGCGAT....................................................................................................................................	20	1	2.00	2	0	0	2	0
....................................................................TAAGTAGTGGATACAAAAGGCGG.....................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................................................TAAGTAGTGGATACAAAAGGCGATTC..................................................................................................................................	26	1	1.00	1	0	0	1	0
....................................................................TAAGTAGTGGATACAAAAGGCAT.....................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................TTAAGTAGTGGATACAAAAGGCGACC...................................................................................................................................	26	1	1.00	1	0	0	1	0
..........................................................................GTGGATACAAAAGGCGAT....................................................................................................................................	18	1	1.00	1	0	0	1	0

droSim2

ATTGTCGGAA---TAAATATAATAATAAT--C-----GG-AAATA-----TT-TAGAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTGATATAA--A-AGTATCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATTCCAACATA----AAA-TG-------------CTA------------------A--ATATTA--CTTATAATTTTGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................TTAAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	24	1	5566.00	5566	0	0	140	102	0	0	1	29	1130	881	0	3281	0	2	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACT...........................................................................................	22	1	695.00	695	0	0	616	2	0	0	0	0	0	0	0	77	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAACT...........................................................................................	23	1	307.00	307	1	0	296	0	0	0	0	0	0	0	0	10	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGG.....................................................................................................................................	24	1	289.00	289	0	0	59	0	0	0	0	0	6	2	0	222	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCG......................................................................................................................................	23	1	289.00	289	0	0	35	2	0	0	0	0	8	7	0	236	0	1	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	25	1	275.00	275	0	0	17	3	0	0	0	0	23	16	0	216	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAAC............................................................................................	22	1	271.00	271	0	0	219	0	0	1	0	0	0	0	0	51	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	24	1	140.00	140	0	0	0	4	0	0	0	0	31	10	0	95	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGC.....................................................................................................................................	24	1	139.00	139	0	0	3	0	0	0	0	0	4	6	0	126	0	0	0	0	0
................................................................................................................CATTGTATGGCCTACTTAACT...........................................................................................	21	1	81.00	81	0	0	76	0	0	0	0	0	0	0	0	5	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	23	1	74.00	74	0	0	0	4	0	0	0	0	18	11	0	41	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGC.......................................................................................................................................	22	1	65.00	65	0	0	6	0	0	1	0	0	1	0	0	57	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGG........................................................................................................................................	21	1	32.00	32	0	0	1	0	0	6	0	0	0	7	0	18	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACC...........................................................................................	22	1	23.00	23	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGT.....................................................................................................................................	24	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAACC...........................................................................................	23	1	18.00	18	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAAC............................................................................................	21	1	17.00	17	0	0	11	0	0	0	0	0	0	0	0	6	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGATA...................................................................................................................................	25	1	14.00	14	0	0	0	0	0	0	0	0	0	2	0	12	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAG.........................................................................................................................................	20	1	13.00	13	0	0	1	0	0	9	0	0	0	0	0	3	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGATT...................................................................................................................................	25	1	13.00	13	0	0	0	0	0	0	0	0	1	0	0	12	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACTT..........................................................................................	23	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGG.....................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACG...........................................................................................	22	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAA....................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	1	4	0	0	3	0	0	0	0	0
............................................................................................................ATCGCATTGTATGGCCTACTTAACT...........................................................................................	25	1	8.00	8	0	0	7	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAA..........................................................................................................................................	19	1	8.00	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGC.......................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0
............................................................................................................ATCGCATTGTATGGCCTACTT...............................................................................................	21	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	22	1	6.00	6	0	0	0	2	0	0	0	0	2	1	0	1	0	0	0	0	0
...........................................................................................................TATCGCATTGTATGGCCTACTTAACT...........................................................................................	26	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAA...........................................................................................................................................	18	1	5.00	5	0	0	0	0	0	3	0	0	0	0	0	2	0	0	0	0	0
................................................................................................................CATTGTATGGCCTACTTAACTT..........................................................................................	22	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	23	1	5.00	5	0	0	0	0	0	1	0	0	2	1	0	1	0	0	0	0	0
............................................................................................................ATCGCATTGTATGGCCTACTTAAC............................................................................................	24	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACT................................................................................................	18	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AGTGGATACAAAAGGCGA.....................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCG......................................................................................................................................	22	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGATT...................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
.........................................................................................................AGTATCGCATTGTATGGCC....................................................................................................	19	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................A-AGTATCGCATTGTATGGCC....................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTT...............................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATCGCATTGTATGGCCTACT................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GGATACAAAAGGCGA.....................................................................................................................................	15	1	3.00	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGGA....................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCCG.....................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAA.........................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAACG...........................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TATCGCATTGTATGGCCTACT................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................ATAA--A-AGTATCGCATTGTATGGCC....................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TAA--A-AGTATCGCATTGTATGGCC....................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GTGGATACAAAAGGCGAT....................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
................................................................................................TATAA--A-AGTATCGCATTGTATGGCC....................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCTC.....................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................TATCGCATTGTATGGCCTACTTAAC............................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................CATTGTATGGCCTACTTAAC............................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGATC...................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGC.....................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACTC..........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGG........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAA..........................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAG.........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCCC.....................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTACT............................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TAGTGGATACAAAAGGCGA.....................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AGTGGATACAAAAGGCGG.....................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

ATTGTA----------------------T--C-----GG-AATTA-----AT-TAGAAATTATATATTTAAGTAGTGGATACAAAGGGCGATTTGATATAA--A-AGTGTCGCATTGTATGACCTACTTAACTAGCTGATTTTGTATCCCAACATA----ATA-GG-------------TTA------------------A--AAATTA--ATTCGAATTTTGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................TTAAGTAGTGGATACAAAGGGCGA.....................................................................................................................................	24	1	12964.00	12964	0	0	0	0	1	0	0	1	35	21	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	1	824	220	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	1	2	0	0	0	0	3	0	0	1	0	52	21	0	16	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	307	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	0	0	32	0	5	72	0	0	39	0	0	0	0	582	285	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	4	1	0	6	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	6359	3505	3	1	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	2	0	95	4	1	0	1	1	1	0	47	89	231	2	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAGGG........................................................................................................................................	21	1	2968.00	2968	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	384	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	11	0	3	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	1	0	1	3	2	0	4	0	0	0	0	22	15	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	7	6	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	189	2238	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	32	1	0	0	0	0	0	0	2	6	6	0	0	0	1	0	0	0
...................................................................TTAAGTAGTGGATACAAAGGGCG......................................................................................................................................	23	1	1844.00	1844	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	62	23	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	2	0	1	18	0	1	17	0	0	0	0	65	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	701	740	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	51	2	1	0	0	0	1	0	9	11	31	0	0	0	0	0	0	0
...............................................................................................................GCATTGTATGACCTACTTAACT...........................................................................................	22	1	1834.00	1834	0	0	0	0	0	0	0	5	27	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	73	40	649	676	7	0	0	1	2	0	3	0	0	1	0	0	3	5	0	0	1	0	0	0	0	1	0	0	0	0	144	37	0	21	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	7	2	0	1	3	0	0	0	0	5	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAGGGC.......................................................................................................................................	22	1	1769.00	1769	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	30	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	1	2	12	0	0	0	0	3	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	496	952	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	82	2	0	1	2	0	8	4	23	14	83	0	0	0	3	0	0	0
...................................................................TTAAGTAGTGGATACAAAGG.........................................................................................................................................	20	1	1041.00	1041	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	443	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	1	0	7	0	0	0	0	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	505	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................GCATTGTATGACCTACTTAACC...........................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAGGGCGATT...................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAGGA........................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAATTGA----------------------------------------------TCAAAATTATATATCTAAGTAGTGGATACAAACGGCGATTTGGTATAA--A-AATGTCGCATTGTATGACCTGCTTAACTAGCTGATTTTGTATCCCAACGTA----CAA-A---------------------------------------------------------GA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................CTAAGTAGTGGATACAAACGGCGA.....................................................................................................................................	24	1	1431.00	1431	153	1042	0	235	0	1	0
...............................................................................................................GCATTGTATGACCTGCTTAACT...........................................................................................	22	1	327.00	327	19	296	0	12	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCG......................................................................................................................................	23	1	131.00	131	20	62	0	49	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGC.......................................................................................................................................	22	1	102.00	102	3	78	0	20	0	1	0
................................................................................................................CATTGTATGACCTGCTTAACT...........................................................................................	21	1	62.00	62	3	50	0	9	0	0	0
...............................................................................................................GCATTGTATGACCTGCTTAACC...........................................................................................	22	1	48.00	48	0	48	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAACGGCGAT....................................................................................................................................	24	1	47.00	47	1	36	0	10	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGG.....................................................................................................................................	24	1	30.00	30	1	2	0	27	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGAT....................................................................................................................................	25	1	29.00	29	3	23	0	3	0	0	0
....................................................................TAAGTAGTGGATACAAACGGCGA.....................................................................................................................................	23	1	18.00	18	10	7	0	1	0	0	0
...................................................................CTAAGTAGTGGATACAAACGG........................................................................................................................................	21	1	12.00	12	3	7	0	2	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGC.....................................................................................................................................	24	1	9.00	9	0	3	0	6	0	0	0
...............................................................................................................GCATTGTATGACCTGCTTAAC............................................................................................	21	1	8.00	8	0	7	0	1	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGAC....................................................................................................................................	25	1	8.00	8	0	4	0	4	0	0	0
....................................................................TAAGTAGTGGATACAAACGGCGAC....................................................................................................................................	24	1	7.00	7	0	7	0	0	0	0	0
..............................................................................................................CGCATTGTATGACCTGCTTAACT...........................................................................................	23	1	6.00	6	0	5	0	1	0	0	0
................................................................................................................CATTGTATGACCTGCTTAACC...........................................................................................	21	1	5.00	5	0	5	0	0	0	0	0
...................................................................CTAAGTAGTGGATACAAAC..........................................................................................................................................	19	1	4.00	4	0	3	0	1	0	0	0
....................................................................TAAGTAGTGGATACAAACGGCG......................................................................................................................................	22	1	3.00	3	0	2	0	1	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGT.....................................................................................................................................	24	1	3.00	3	1	1	0	1	0	0	0
.................................................................................................................ATTGTATGACCTGCTTAACT...........................................................................................	20	1	3.00	3	1	2	0	0	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGATT...................................................................................................................................	26	1	2.00	2	0	1	0	1	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCC......................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0
....................................................................TAAGTAGTGGATACAAACGGC.......................................................................................................................................	21	1	2.00	2	0	1	0	1	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGAA....................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0
................................................................................................................CATTGTATGACCTGCTTAACTT..........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................CATTGTATGACCTGCTTAAC............................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................................................................CTAAGTAGTGGATACAAACGA........................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................CGCATTGTATGACCTGCTTAAC............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.....................................................................AAGTAGTGGATACAAACGGCGA.....................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................GCATTGTATGACCTGCTTAA.............................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
....................................................................TAAGTAGTGGATACAAACGGCGATT...................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................GCATTGTATGACCTGCTTAAT............................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................CTAAGTAGTGGATACAAACGCGA......................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................CATTGTATGACCTGCTTAACG...........................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................GCATTGTATGACCTGCTTAACA...........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...................................................................CTAAGTAGTGGATACAAACGGCGAGA...................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...................................................................CTAAGTAGTGGATACAAACGT........................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0

droYak3

ATTATGCTTC----GA------------------------AGTT-----TTA-AAAAAATTATATATTTAAGTAGTGGATACAAAAGGCGATTG-ATATAA--A-AATGTCGCATTGTATGGCCTACTTAACTAGCTGATTTTGTATCCCAACTTACATCAAT-----------------------------------------------------------TA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................TTAAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	24	1	24940.00	24940	0	18	22498	2417	2	5	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACT...........................................................................................	22	1	3854.00	3854	1	0	3794	59	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCG......................................................................................................................................	23	1	1165.00	1165	0	2	1035	127	0	1	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACC...........................................................................................	22	1	937.00	937	0	0	937	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	23	1	474.00	474	0	2	428	44	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGC.......................................................................................................................................	22	1	293.00	293	0	0	280	13	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGG........................................................................................................................................	21	1	194.00	194	0	0	178	16	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	24	1	160.00	160	0	0	146	13	0	1	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAAC............................................................................................	21	1	156.00	156	0	0	155	1	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGG.....................................................................................................................................	24	1	140.00	140	0	0	29	111	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAT....................................................................................................................................	25	1	94.00	94	0	0	88	6	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGC.....................................................................................................................................	24	1	83.00	83	0	0	14	69	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCG......................................................................................................................................	22	1	48.00	48	0	0	39	9	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAC....................................................................................................................................	25	1	40.00	40	0	0	37	3	0	0	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAAC............................................................................................	22	1	30.00	30	0	0	29	1	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGAC....................................................................................................................................	24	1	28.00	28	0	0	28	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGT.....................................................................................................................................	24	1	27.00	27	0	0	17	10	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGC.......................................................................................................................................	21	1	22.00	22	0	0	20	2	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAA....................................................................................................................................	25	1	22.00	22	0	0	22	0	0	0	0	0	0	0	0
.................................................................................................................ATTGTATGGCCTACTTAACT...........................................................................................	20	1	17.00	17	0	0	17	0	0	0	0	0	0	0	0
.....................................................................AAGTAGTGGATACAAAAGGCGA.....................................................................................................................................	22	1	16.00	16	0	0	15	1	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAG.........................................................................................................................................	20	1	16.00	16	0	0	15	1	0	0	0	0	0	0	0
................................................................................................................CATTGTATGGCCTACTTAACT...........................................................................................	21	1	15.00	15	0	0	13	2	0	0	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACTT..........................................................................................	23	1	15.00	15	0	0	15	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGATT...................................................................................................................................	25	1	12.00	12	0	0	12	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCC......................................................................................................................................	23	1	10.00	10	0	0	10	0	0	0	0	0	0	0	0
.......................................................................GTAGTGGATACAAAAGGCGA.....................................................................................................................................	20	1	8.00	8	0	0	7	0	0	1	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAACT...........................................................................................	23	1	7.00	7	1	0	6	0	0	0	0	0	0	0	0
...............................................................................................................GCATTGTATGGCCTACTTAACA...........................................................................................	22	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCA......................................................................................................................................	23	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
.........................................................................AGTGGATACAAAAGGCGA.....................................................................................................................................	18	1	6.00	6	0	0	4	2	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGATT...................................................................................................................................	26	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
................................................................................................................CATTGTATGGCCTACTTAACC...........................................................................................	21	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
........................................................................TAGTGGATACAAAAGGCGA.....................................................................................................................................	19	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGG.....................................................................................................................................	23	1	5.00	5	0	0	0	5	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCT......................................................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.............................................................................................................TCGCATTGTATGGCCTACTTAACT...........................................................................................	24	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.....................................................................AAGTAGTGGATACAAAAGGCG......................................................................................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGG........................................................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
...........................................................................................................TGTCGCATTGTATGGCCTACTTAACT...........................................................................................	26	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0
.....................................................................AAGTAGTGGATACAAAAGG........................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................A-AATGTCGCATTGTATGGC.....................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCGAG....................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
....................................................................TAAGTAGTGGATACAAAAGGCGATA...................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................CGCATTGTATGGCCTACTTAACC...........................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGG.......................................................................................................................................	22	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.................................................................................................................ATTGTATGGCCTACTTAACC...........................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................AA--A-AATGTCGCATTGTATGGCCTACT................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................TTAAGTAGTGGATACAAAAGGCCT.....................................................................................................................................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0

droEug1

AATTAAT------------------------------------T-----TTA-CAAAAATCATATACTTAAGTAGTGGATACAAATTGCGATTTTAA--AA--T-ATACTCGCATTGTATGGCCTACTTAGTTAGTTGATTTTTAACACCGTC-------AAGATAAAAGGCAAGTGAA-------------------TG-AA--ATTAAGTCAAGAAATTTGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AATTTCAATATTT---TAAAA-------TAT----TTAG------A--ATTT-AGAAAATCATTTGTTTAAGTAGTGCATACAAAAGGCGATTTGCTATCA--A-ACGTTCGCATTGTATGCCCTACTTAACTAGTTGGTTTTTCTAAGCAACATT----AAAATTATTG-----------------------------------ATTA--C-----TAATTGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTGTT----------------------T--T-----TG-AAATT-----TC-AAAAAATCATACATTTAAGTAGTGGATACAAAAGGCGATTTGCTAATA-AA-ATGTTCGCATTGTATGGCCTACTTAACTAACTGATTTTTTTTAACAACATT----AAAATAACTG----CTGAA-------------------T------ACAA----AAGATAATAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATACAATAAAA---GATTA-------TGT----TTTG------T---TTA-AAAAAATCATGTATTTAAGTAGTGGATACAAAAGGCGATTTACAAAAT-AA-ATGTTCGCATTGTATGCCCTACTTAACTAGCAGGTTTT---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGTAGATTA----------ATAACTAAAAT----TCTG------TT-ATAA-AAAAAATCATATGTTTAAGTAGTGGATACAAATGGCGACTTGCAAACG-AA-ATGTTCGCATTGTATGTCCTACTTAAGTAGCTGATTTT---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTGTTATAT-------------------------TTTTAACATA-----TT-AAAAAATTATACGTTTAAGTAGTGGATACAAAAGGCGATTTGTATAAC-GA-AAGTTCGCATTGTATGTCCTACTTAAGTGGCTGATTTTTTCAAGCAACATC----AAA----------------------------------------AAATTG--TTTAGA----GGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCTGACCTAA-AATAA------GGACATA--CATATCTG------TTAATTA-AGAAAATCGTATGTTTAAGTAGTGGATACAA-CGGCGATTGAACACAA-TA-ATCTTCGCAGTGTGTTACCTACTTAATTAGTCGATTTT---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATTTCAAGCC----AAAGTTTTC-ATAAA--T--ATCTG------T---GCAAACTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGACTAAATAAAA--T-ATACTCGCAATGTATAGCCTACATAACTAGTTGATTTTTGCAAGCATCCAT---TACA-AA-------------TTAAATACAATTTTAAG--TT-GA--A-------GTGATTATTGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................TTAAGTAGGCAATACAT-GGGCGA.....................................................................................................................................	23	1	6998.00	6998	5	5955	1002	5	7	24
...................................................................TTAAGTAGGCAATACAT-GGG........................................................................................................................................	20	1	371.00	371	0	191	177	0	0	3
...................................................................TTAAGTAGGCAATACAT-GGGC.......................................................................................................................................	21	1	299.00	299	0	229	67	0	2	1
...................................................................TTAAGTAGGCAATACAT-GGGCG......................................................................................................................................	22	1	257.00	257	1	195	57	0	2	2
....................................................................TAAGTAGGCAATACAT-GGGCGA.....................................................................................................................................	22	1	78.00	78	0	62	16	0	0	0
...................................................................TTAAGTAGGCAATACAT-GG.........................................................................................................................................	19	1	48.00	48	0	30	18	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGAC....................................................................................................................................	24	1	44.00	44	0	44	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-GGGCGA.....................................................................................................................................	24	1	42.00	42	0	38	4	0	0	0
...............................................................................................................GCAATGTATAGCCTACATAACT...........................................................................................	22	1	39.00	39	0	34	5	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGG.....................................................................................................................................	23	1	21.00	21	0	12	9	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGAA....................................................................................................................................	24	1	15.00	15	0	13	2	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGAT....................................................................................................................................	24	1	14.00	14	0	14	0	0	0	0
.....................................................................AAGTAGGCAATACAT-GGGCGA.....................................................................................................................................	21	1	13.00	13	0	10	3	0	0	0
...............................................................................................................GCAATGTATAGCCTACATAACC...........................................................................................	22	1	11.00	11	0	11	0	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGC.....................................................................................................................................	23	1	10.00	10	0	1	9	0	0	0
....................................................................TAAGTAGGCAATACAT-GGGCGAC....................................................................................................................................	23	1	10.00	10	0	10	0	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGT.....................................................................................................................................	23	1	6.00	6	0	3	2	0	1	0
...................................................................TTAAGTAGGCAATACAT-GGGCGACT...................................................................................................................................	25	1	6.00	6	0	6	0	0	0	0
...................................................................TTAAGTAGGCAATACAT-G..........................................................................................................................................	18	1	6.00	6	0	3	3	0	0	0
....................................................................TAAGTAGGCAATACAT-GGGCG......................................................................................................................................	21	1	4.00	4	0	2	2	0	0	0
...............................................................................................................GCAATGTATAGCCTACATAAC............................................................................................	21	1	4.00	4	0	4	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-GGG........................................................................................................................................	21	1	4.00	4	0	2	2	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCC......................................................................................................................................	22	1	4.00	4	0	4	0	0	0	0
....................................................................TAAGTAGGCAATACAT-GGGC.......................................................................................................................................	20	1	4.00	4	0	4	0	0	0	0
......................................................................AGTAGGCAATACAT-GGGCGACTA..................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0
.....................................................................AAGTAGGCAATACAT-GGG........................................................................................................................................	18	1	3.00	3	0	1	2	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGT........................................................................................................................................	20	1	3.00	3	0	1	2	0	0	0
.....................................................................AAGTAGGCAATACAT-GGGC.......................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0
.....................................................................AAGTAGGCAATACAT-GGGCGACT...................................................................................................................................	23	1	3.00	3	0	2	1	0	0	0
............................................................................................................CTCGCAATGTATAGCCTACATA..............................................................................................	22	1	3.00	3	0	2	1	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGAAA...................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-GGGCG......................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0
....................................................................TAAGTAGGCAATACAT-GGG........................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0
........................................................................TAGGCAATACAT-GGGCGA.....................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGATA...................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
...............................................................................................................GCAATGTATAGCCTACATAACTT..........................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-...........................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCGAG....................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................AGTAGGCAATACAT-GGGCGA.....................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGCCC.....................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
......................................................................AGTAGGCAATACAT-GGGCGACC...................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-GG.........................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................................................TAAGTAGGCAATACAT-GGGCGAA....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-GGGC.......................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
....................................................................TAAGTAGGCAATACAT-GGGCGAT....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................TTAAGTAGGCAATACAT-GGGT.......................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
....................................................................TAAGTAGGCAATACAT-GGGCGACC...................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................TTTAAGTAGGCAATACAT-GGGCGAA....................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droBip1

ATCTTCCAAA---CAATATTA-------TCT----TCTTAATATA-----CAACTTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGATTCATTA--------CATTCGCAATGTATGGCTTACATAACTAGTTGATTTTTGAAGTCATCCAT---TCCA-AAG------------TTAATTTCTATCTTATATG--TGA--A-------GTGTGTATTGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACTGTGCGAT---TAGAGTTATCAATAGG--CAGGTCCT------C---TCA-AAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAA-GA-ACTTTCGCATTGTGTGACCTACTTAAATGCTCGATT-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................CTAAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	23	1	5183.00	5183	0	687	2812	0	1684	0	0	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAAT...........................................................................................	22	1	711.00	711	0	51	470	0	189	1	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	22	1	528.00	528	0	90	215	0	223	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGAT....................................................................................................................................	23	1	472.00	472	0	25	293	0	154	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGC.......................................................................................................................................	21	1	198.00	198	0	8	86	0	104	0	0	0	0	0
..................................................................CCTAAGTAGTTGATACAA-GGGCG......................................................................................................................................	23	1	167.00	167	0	36	116	0	15	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCG......................................................................................................................................	22	1	130.00	130	0	35	55	0	40	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGAC....................................................................................................................................	23	1	78.00	78	0	0	77	0	1	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGG........................................................................................................................................	20	1	66.00	66	0	2	28	0	36	0	0	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAA............................................................................................	21	1	60.00	60	0	6	36	0	18	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGC.......................................................................................................................................	20	1	50.00	50	0	0	19	0	31	0	0	0	0	0
..............................................................................................................CGCATTGTGTGACCTACTTAAA............................................................................................	22	1	46.00	46	0	2	7	0	37	0	0	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAAC...........................................................................................	22	1	46.00	46	0	0	46	0	0	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGAT....................................................................................................................................	24	1	28.00	28	0	6	17	0	5	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGC.....................................................................................................................................	23	1	26.00	26	0	0	7	0	19	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCG......................................................................................................................................	21	1	26.00	26	0	5	8	0	13	0	0	0	0	0
.............................................................................................................TCGCATTGTGTGACCTACTTAAA............................................................................................	23	1	18.00	18	0	0	6	0	12	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGT.....................................................................................................................................	23	1	18.00	18	0	1	6	0	11	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGG.....................................................................................................................................	23	1	17.00	17	0	0	8	0	9	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGATT...................................................................................................................................	24	1	14.00	14	0	2	11	0	1	0	0	0	0	0
..................................................................CCTAAGTAGTTGATACAA-GGGC.......................................................................................................................................	22	1	13.00	13	0	1	11	0	1	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GG.........................................................................................................................................	19	1	12.00	12	0	0	3	0	9	0	0	0	0	0
............................................................................................................TTCGCATTGTGTGACCTACTTA..............................................................................................	22	1	11.00	11	0	1	0	0	10	0	0	0	0	0
.....................................................................AAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	21	1	11.00	11	0	8	2	0	1	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGAC....................................................................................................................................	24	1	10.00	10	0	0	8	0	2	0	0	0	0	0
..................................................................CCTAAGTAGTTGATACAA-GGG........................................................................................................................................	21	1	8.00	8	0	0	8	0	0	0	0	0	0	0
............................................................................................................TTCGCATTGTGTGACCTACTTAAA............................................................................................	24	1	8.00	8	0	0	1	0	7	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGAA....................................................................................................................................	24	1	7.00	7	0	2	3	0	2	0	0	0	0	0
.............................................................................................................TCGCATTGTGTGACCTACTTAA.............................................................................................	22	1	7.00	7	0	0	1	0	6	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGATA...................................................................................................................................	25	1	7.00	7	0	0	6	0	1	0	0	0	0	0
..................................................................CCTAAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	24	1	7.00	7	0	2	3	0	2	0	0	0	0	0
................................................................................................................CATTGTGTGACCTACTTAAAT...........................................................................................	21	1	7.00	7	0	3	3	0	1	0	0	0	0	0
................................................................................................................CATTGTGTGACCTACTTAAATG..........................................................................................	22	1	6.00	6	0	0	2	0	4	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGG........................................................................................................................................	19	1	6.00	6	0	0	0	0	6	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGATC...................................................................................................................................	24	1	5.00	5	0	0	5	0	0	0	0	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAA.............................................................................................	20	1	5.00	5	0	1	1	0	3	0	0	0	0	0
..............................................................................................................CGCATTGTGTGACCTACTTAA.............................................................................................	21	1	5.00	5	0	0	0	0	5	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGATA...................................................................................................................................	24	1	4.00	4	0	0	2	0	2	0	0	0	0	0
......................................................................AGTAGTTGATACAA-GGGCGA.....................................................................................................................................	20	1	4.00	4	0	2	0	0	2	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGG.....................................................................................................................................	22	1	3.00	3	0	0	1	0	2	0	0	0	0	0
.....................................CT------C---TCA-AAATAATCGGGCAC.............................................................................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0
.................................................................................................................ATTGTGTGACCTACTTAAAT...........................................................................................	20	1	3.00	3	0	0	1	0	2	0	0	0	0	0
............................................................................................................TTCGCATTGTGTGACCTACTTAA.............................................................................................	23	1	3.00	3	0	1	0	0	2	0	0	0	0	0
......................................T------C---TCA-AAATAATCGGGCAC.............................................................................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGC.....................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0
.....................................................................AAGTAGTTGATACAA-GGGCGAT....................................................................................................................................	22	1	3.00	3	0	2	1	0	0	0	0	0	0	0
......................................................................AGTAGTTGATACAA-GGGCGATAATG................................................................................................................................	25	1	3.00	3	0	0	1	0	2	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGATTT..................................................................................................................................	25	1	2.00	2	0	0	1	0	1	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGAG....................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGATC...................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGT.....................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCCT.....................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAATA..........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGG.......................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................GTAGTTGATACAA-GGGCGA.....................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................TCCT------C---TCA-AAATAATCGGGCA..............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAATG..........................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

ACTGTGCGAT---TAGAGTTATCAATAGG--CAGGTCCT------C---TCA-AAATAATCGGGCACCTAAGTAGTTGATACAA-GGGCGATAATGTAAAA-GA-ACTTTCGCATTGTGTGACCTACTTAAATGCCCGATT-----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................CTAAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	23	1	877.00	877	391	23	440	1	22	0
...................................................................CTAAGTAGTTGATACAA-GGGC.......................................................................................................................................	21	1	138.00	138	121	0	17	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAAT...........................................................................................	22	1	98.00	98	31	4	63	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCG......................................................................................................................................	22	1	63.00	63	49	1	12	0	1	0
...................................................................CTAAGTAGTTGATACAA-GGGCGG.....................................................................................................................................	23	1	55.00	55	54	0	1	0	0	0
......................................T------C---TCA-AAATAATCGGGCAC.............................................................................................................................................................	19	1	22.00	22	19	1	2	0	0	0
....................................................................TAAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	22	1	18.00	18	4	2	12	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGC.....................................................................................................................................	23	1	15.00	15	10	0	5	0	0	0
.....................................CT------C---TCA-AAATAATCGGGCAC.............................................................................................................................................................	20	1	9.00	9	9	0	0	0	0	0
..................................................................CCTAAGTAGTTGATACAA-GGGCG......................................................................................................................................	23	1	7.00	7	4	2	0	0	1	0
....................................................................TAAGTAGTTGATACAA-GGGCGAT....................................................................................................................................	23	1	6.00	6	4	0	2	0	0	0
...............................................................................................................GCATTGTGTGACCTACTTAAA............................................................................................	21	1	5.00	5	2	0	3	0	0	0
...........................................................................................TAATGTAAAA-GA-ACTTTC.................................................................................................................	18	1	4.00	4	4	0	0	0	0	0
...................................................................CTAAGTAGTTGATACAA-GG.........................................................................................................................................	19	1	4.00	4	1	0	3	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGG........................................................................................................................................	20	1	4.00	4	1	1	2	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGAC....................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0
.............................................................................................................TCGCATTGTGTGACCTACTTAAA............................................................................................	23	1	3.00	3	0	0	3	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGT.....................................................................................................................................	23	1	3.00	3	1	0	2	0	0	0
................................................................................................................CATTGTGTGACCTACTTAAATG..........................................................................................	22	1	3.00	3	3	0	0	0	0	0
..................................................................CCTAAGTAGTTGATACAA-GGGC.......................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................C---TCA-AAATAATCGGGCAC.............................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
............................................................................................................TTCGCATTGTGTGACCTACTTAAA............................................................................................	24	1	2.00	2	0	0	2	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGG.......................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
............................................................................................................TTCGCATTGTGTGACCTACTTA..............................................................................................	22	1	2.00	2	0	0	2	0	0	0
........................................................................TAGTTGATACAA-GGGCGA.....................................................................................................................................	18	1	2.00	2	1	0	1	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGAA....................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
............................................................................................................TTCGCATTGTGTGACCTACTTAA.............................................................................................	23	1	1.00	1	0	0	1	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCGCC....................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................AGTAGTTGATACAA-GGGCG......................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................CTAAGTAGTTGATACAA-GGGCA......................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
......................................................................AGTAGTTGATACAA-GGGCGA.....................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................AGTAGTTGATACAA-GGGCGATAATG................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
................................................................................................................CATTGTGTGACCTACTTAAAT...........................................................................................	21	1	1.00	1	0	0	1	0	0	0
.................................................................................................................ATTGTGTGACCTACTTAAAT...........................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................CCT------C---TCA-AAATAATCGGGCAC.............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droWil2

ATTGAAAAAG--------TGTTCATTTG------ATCTG------GTCA-TT-GAAAAATGTTACACTTAAGTAGTTAATACAA-TGGCGATTCGTATTCCATTGTACATCGCATTGTGTGAGTTACTTTGTTGAGAGATTTT---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................TTAAGTAGTTAATACAA-TGGCGA.....................................................................................................................................	23	1	25007.00	25007	0	149	0	24838	20
...................................................................TTAAGTAGTTAATACAA-TGGCG......................................................................................................................................	22	1	1805.00	1805	0	6	0	1798	1
...................................................................TTAAGTAGTTAATACAA-TGGCGAT....................................................................................................................................	24	1	762.00	762	0	7	0	754	1
....................................................................TAAGTAGTTAATACAA-TGGCGAT....................................................................................................................................	23	1	592.00	592	0	6	0	586	0
...............................................................................................................GCATTGTGTGAGTTACTTTGTT...........................................................................................	22	1	96.00	96	0	0	0	96	0
....................................................................TAAGTAGTTAATACAA-TGGCGA.....................................................................................................................................	22	1	91.00	91	0	12	0	79	0
..................................................................CTTAAGTAGTTAATACAA-TGGCG......................................................................................................................................	23	1	64.00	64	0	0	0	64	0
..................................................................CTTAAGTAGTTAATACAA-TGGCGA.....................................................................................................................................	24	1	35.00	35	0	0	0	35	0
...................................................................TTAAGTAGTTAATACAA-TGGCGAA....................................................................................................................................	24	1	28.00	28	0	0	0	28	0
...................................................................TTAAGTAGTTAATACAA-TGG........................................................................................................................................	20	1	19.00	19	0	1	0	18	0
...................................................................TTAAGTAGTTAATACAA-TGGCGG.....................................................................................................................................	23	1	15.00	15	0	0	0	15	0
...................................................................TTAAGTAGTTAATACAA-TGGCGATT...................................................................................................................................	25	1	12.00	12	0	0	0	12	0
...................................................................TTAAGTAGTTAATACAA-TGGCA......................................................................................................................................	22	1	12.00	12	0	0	0	12	0
....................................................................TAAGTAGTTAATACAA-TGGCGATT...................................................................................................................................	24	1	10.00	10	0	0	0	10	0
....................................................................TAAGTAGTTAATACAA-TGGCG......................................................................................................................................	21	1	10.00	10	0	0	0	10	0
...................................................................TTAAGTAGTTAATACAA-TGGC.......................................................................................................................................	21	1	9.00	9	0	0	0	9	0
.....................................................................AAGTAGTTAATACAA-TGGCGA.....................................................................................................................................	21	1	9.00	9	0	1	0	8	0
...................................................................TTAAGTAGTTAATACAA-TGGCGC.....................................................................................................................................	23	1	9.00	9	0	0	0	9	0
..............................................................................................................CGCATTGTGTGAGTTACTTTGTT...........................................................................................	23	1	8.00	8	0	0	0	8	0
......................................................................AGTAGTTAATACAA-TGGCGA.....................................................................................................................................	20	1	6.00	6	0	0	0	6	0
...................................................................TTAAGTAGTTAATACAA-TGGCGAC....................................................................................................................................	24	1	5.00	5	0	0	0	5	0
.....................................................................AAGTAGTTAATACAA-TGGCGAT....................................................................................................................................	22	1	5.00	5	0	3	0	2	0
...................................................................TTAAGTAGTTAATACAA-TGGCT......................................................................................................................................	22	1	4.00	4	0	0	0	4	0
...........................................................................................TTCGTATTCCATTGTACATC.................................................................................................................	20	1	4.00	4	0	0	0	4	0
...............................................................................................................GCATTGTGTGAGTTACTTTG.............................................................................................	20	1	3.00	3	0	0	0	3	0
..............................................................................................................CGCATTGTGTGAGTTACTTTG.............................................................................................	21	1	3.00	3	0	0	0	3	0
...................................................................TTAAGTAGTTAATACAA-TGGCGT.....................................................................................................................................	23	1	3.00	3	0	0	0	3	0
....................................................................TAAGTAGTTAATACAA-TGGC.......................................................................................................................................	20	1	3.00	3	0	0	0	3	0
....................................................................TAAGTAGTTAATACAA-TGGCGATA...................................................................................................................................	24	1	2.00	2	0	0	0	2	0
.............................................................................................................TCGCATTGTGTGAGTTACTTTG.............................................................................................	22	1	2.00	2	0	0	0	2	0
................................................................................................................CATTGTGTGAGTTACTTTGTTG..........................................................................................	22	1	2.00	2	0	0	0	2	0
...................................................................TTAAGTAGTTAATACAA-TGCGA......................................................................................................................................	22	3	1.67	5	0	0	0	5	0
........................................................................TAGTTAATACAA-TGGCGA.....................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................TTAAGTAGTTAATACAA-T..........................................................................................................................................	18	1	1.00	1	0	1	0	0	0
...............................................................................................................GCATTGTGTGAGTTACTTTGTTA..........................................................................................	23	1	1.00	1	0	0	0	1	0
..............................................................................................................CGCATTGTGTGAGTTACTTTGT............................................................................................	22	1	1.00	1	0	0	0	1	0
...................................................................TTAAGTAGTTAATACAA-TGGCGATA...................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................TTAAGTAGTTAATACAA-TGGCC......................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................................TAAGTAGTTAATACAA-TGG........................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................................................AGTAGTTAATACAA-TGGCGAT....................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...................................................................TTAAGTAGTTAATACAA-TGA........................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........................................................................TAGTTAATACAA-TGGCGATT...................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................................................................CTTAAGTAGTTAATACAA-TGGCGAT....................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................TTAAGTAGTTAATACAA-TGCG.......................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...................................................................TTAAGTAGTTAATACAA-TGGCGATC...................................................................................................................................	25	1	1.00	1	0	0	0	1	0

droGri2

ATGCAAACTG---TAAA--TATTTATAAT--C-----AC------TGTA-T--TGAAAATTTAACACTTAAGTAGTTGATACAA-GGGCGAGTTTCAT--A--A-AGTATCGCATTGTGTGACCTACTTGAATGAGAGATTTTTAAG---------------A-TA-------------CTG------------------T--AAATTA--TGAAT------AA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................TTAAGTAGTTGATACAA-GGGCGA.....................................................................................................................................	23	1	2.00	2	0	2

dse_11

scaffold_3:14465-14528 -

Known Ortholog

Canonical miRNA

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.4	-20.4	-20.4