ID:

dse-mir-87

 Coordinate:

scaffold_3:5397147-5397238 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.6 -42.5 -42.4

Flybase annnotation

utr3 [utr3_minus_970]; pre_miRNA [Dsec\mir-87-RM]; miRNA [Dsec\miR-87-RA]

No Repeatable elements found

Sense Strand Reads

CTTAAATGGTGATTCATTTCGTCCTGGCTGACAACCAAGTCCTTTGGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGCTGCCATCATGGCCAACGATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGGATTTATCAGACTGGTGATCATTTCCGGTGAGTAT

*********************************************.((((((((((((...((((((((.((.(((((.(((((..((((...))))........))))).))))).))..))))))))...))))))))))..)).********************************************* 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 V113

male body		 V115

head

 M054

female body
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGA............................................................ 24 0 1 19236.00 19236 12194 4012 2758 272
............................................................................................................TTGAGCAAAATTTCAGGTGTGTG............................................................. 23 0 1 6199.00 6199 2110 2222 1735 132
............................................................................................................TTGAGCAAAATTTCAGGTGTGT.............................................................. 22 0 1 5249.00 5249 258 2886 1938 167
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGA............................................................ 23 0 1 3346.00 3346 1921 646 707 72
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGT............................................................ 24 1 1 888.00 888 69 447 352 20
.............................................................................................................TGAGCAAAATTTCAGGTGTGTG............................................................. 22 0 1 837.00 837 174 304 324 35
............................................................................................................TTGAGCAAAATTTCAGGTGTG............................................................... 21 0 1 731.00 731 41 352 313 25
.............................................................................................................TGAGCAAAATTTCAGGTGTGT.............................................................. 21 0 1 260.00 260 7 113 119 21
............................................................TCGCGCCTGTATCTTGCTGAACC............................................................................................................. 23 0 1 186.00 186 182 2 0 2
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGT............................................................ 23 1 1 173.00 173 6 82 79 6
............................................................................................................TTGAGCAAAATTTCAGGTGT................................................................ 20 0 1 138.00 138 6 69 61 2
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA........................................................... 25 1 1 130.00 130 72 33 18 7
............................................................................................................TTGAGCAAAATTTCAGGTGTGA.............................................................. 22 1 1 106.00 106 57 27 19 3
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT........................................................... 25 1 1 103.00 103 34 47 19 3
............................................................TCGCGCCTGTATCTTGCTGAAC.............................................................................................................. 22 0 1 78.00 78 60 6 8 4
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAA........................................................... 24 1 1 60.00 60 35 8 13 4
............................................................................................................TTGAGTAAAATTTCAGGTGTGTGA............................................................ 24 1 1 54.00 54 52 0 2 0
............................................................................................................TTGAGCAAAATTTCAGGCGTGTGA............................................................ 24 1 1 49.00 49 34 15 0 0
............................................................................................................TTGAGCAAAATTTCAGGTCTGTGA............................................................ 24 1 1 48.00 48 13 31 3 1
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAT........................................................... 24 1 1 40.00 40 20 7 10 3
............................................................................................................CTGAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 39.00 39 26 9 4 0
............................................................................................................TTGAGCAAAAATTCAGGTGTGTGA............................................................ 24 1 1 37.00 37 34 2 1 0
............................................................................................................TTGAGCAAAATTTCGGGTGTGTGA............................................................ 24 1 1 35.00 35 25 6 4 0
............................................................................................................TTGAGCAAAATTTTAGGTGTGTGA............................................................ 24 1 1 35.00 35 31 2 2 0
............................................................................................................TTGAGCAAAATTTCAGGTATGTGA............................................................ 24 1 1 35.00 35 3 31 1 0
............................................................................................................TTGAGCAAAATTTCAGGGGTGTGA............................................................ 24 1 1 33.00 33 13 12 8 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGG............................................................ 24 1 1 32.00 32 21 6 4 1
...........................................................................................................CTTGAGCAAAATTTCAGGTGTGTGA............................................................ 25 1 1 29.00 29 21 0 7 1
............................................................................................................TTGAGCAAAATTTCAGGTTTGTGA............................................................ 24 1 1 29.00 29 5 22 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGCGA............................................................ 24 1 1 26.00 26 18 6 2 0
............................................................................................................TTGAGCAAAATTTCAGGTCTGT.............................................................. 22 1 1 26.00 26 0 24 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTT............................................................. 23 1 1 26.00 26 2 16 8 0
............................................................................................................TTGAGCAAAATTTCAGGTATGT.............................................................. 22 1 1 25.00 25 0 23 1 1
.............................................................................................................TGAGCAAAATTTCAGGTGTG............................................................... 20 0 1 23.00 23 2 5 14 2
............................................................................................................TTGAGCAAAATTTCCGGTGTGTGA............................................................ 24 1 1 23.00 23 15 6 2 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAG........................................................... 24 0 1 22.00 22 15 1 3 3
............................................................................................................TTGAGCAAAATTTCAGGCGTGTG............................................................. 23 1 1 19.00 19 0 16 3 0
............................................................................................................TTGACCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 19.00 19 17 2 0 0
..............................................................................................................GAGCAAAATTTCAGGTGTGTGA............................................................ 22 0 1 19.00 19 8 5 3 3
............................................................................................................TTGAGCAAAATTTCAGGTGCGTGA............................................................ 24 1 1 19.00 19 9 2 8 0
............................................................................................................TTGAGCAGAATTTCAGGTGTGTGA............................................................ 24 1 1 18.00 18 15 2 1 0
............................................................................................................TTGAGCAAAATTTCGTGTGTGTGA............................................................ 24 2 1 18.00 18 16 2 0 0
............................................................................................................TTGAGCAAAATTTCTGGTGTGTGA............................................................ 24 1 1 18.00 18 16 2 0 0
............................................................................................................TTGAGCAAAACTTCAGGTGTGTGA............................................................ 24 1 1 18.00 18 12 4 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGC............................................................ 24 1 1 18.00 18 3 7 8 0
............................................................................................................TTGAGCAAAGTTTCAGGTGTGTGA............................................................ 24 1 1 17.00 17 15 0 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGCGT.............................................................. 22 1 1 16.00 16 1 9 6 0
............................................................................................................TTGAGAAAAATTTCAGGTGTGTGA............................................................ 24 1 1 16.00 16 10 3 3 0
............................................................................................................TTGAGCAAAATTTCAGGTCTGTG............................................................. 23 1 1 15.00 15 5 10 0 0
............................................................................................................TTGAGCAAAATTTCAGGTTTGTG............................................................. 23 1 1 15.00 15 2 7 6 0
............................................................................................................TTGAGCGAAATTTCAGGTGTGTGA............................................................ 24 1 1 15.00 15 9 3 3 0
............................................................................................................TTGGGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 14.00 14 11 1 2 0
............................................................................................................TTGAGCAAAATTCCAGGTGTGTGA............................................................ 24 1 1 14.00 14 10 3 1 0
............................................................................................................TCGAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 14.00 14 6 8 0 0
............................................................................................................TTGAGCAAAATTTCAGGCGTGT.............................................................. 22 1 1 13.00 13 0 11 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTTGA............................................................. 23 3 1 13.00 13 9 0 4 0
............................................................................................................TTGAGCAAAATCTCAGGTGTGTGA............................................................ 24 1 1 13.00 13 11 2 0 0
............................................................................................................TTGAGCAAACTTTCAGGTGTGTGA............................................................ 24 1 1 13.00 13 11 0 2 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGA.............................................................. 21 1 1 13.00 13 9 2 2 0
............................................................................................................TTGAGCAAAATTTCAGGTATGTG............................................................. 23 1 1 13.00 13 1 12 0 0
............................................................................................................TTGAGCAAAATTTCATGTGTGTGA............................................................ 24 1 1 13.00 13 9 2 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTC............................................................. 23 1 1 12.00 12 4 3 5 0
............................................................................................................TTGAGCAGAATTTCAGGTGTGTG............................................................. 23 1 1 12.00 12 6 4 2 0
............................................................................................................TTGAGCAAAATTTAAGGTGTGTGA............................................................ 24 1 1 12.00 12 7 3 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTTTGA............................................................ 24 1 1 12.00 12 8 2 1 1
............................................................................................................TTGAGCAAAATTTCAGGTTTGT.............................................................. 22 1 1 12.00 12 1 11 0 0
............................................................................................................TTGAGCAAGATTTCAGGTGTGTGA............................................................ 24 1 1 12.00 12 8 1 3 0
............................................................................................................TTGAGCAAAATTTCGGGTGTGTG............................................................. 23 1 1 12.00 12 8 2 2 0
............................................................................................................TTCAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 12.00 12 8 2 1 1
............................................................................................................TTGAGCAAAATTTCAGTTGTGTGA............................................................ 24 1 1 12.00 12 8 2 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGC.............................................................. 22 1 1 12.00 12 0 9 3 0
............................................................................................................TTGAGAAAAATTTCAGGTGTGTG............................................................. 23 1 1 11.00 11 1 2 8 0
............................................................................................................TTGATCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 11.00 11 8 1 2 0
............................................................................................................TTTAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 11.00 11 6 2 3 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG........................................................... 25 0 1 11.00 11 9 1 1 0
............................................................................................................TTGAACAAAATTTCAGGTGTGTGA............................................................ 24 1 1 11.00 11 7 4 0 0
.............................................................................................................TTAGCAAAATTTCAGGTGTGTGA............................................................ 23 1 1 10.00 10 8 0 2 0
............................................................................................................TTGAGCAAAATTTCACGTGTGTGA............................................................ 24 1 1 10.00 10 5 3 2 0
............................................................................................................TTGAGCAAAATTTCAGGGGTGTG............................................................. 23 1 1 10.00 10 0 7 2 1
............................................................................................................TTGAGCAAAATTTCAGATGTGTGA............................................................ 24 1 1 10.00 10 6 4 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAA.......................................................... 26 1 1 10.00 10 7 2 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTTA............................................................ 24 1 1 10.00 10 5 3 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT........................................................... 25 2 1 10.00 10 1 6 2 1
............................................................................................................TTGAGCAAAATTTCAGGTGTGTA............................................................. 23 1 1 10.00 10 4 4 2 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAAA.......................................................... 25 1 1 10.00 10 6 2 2 0
.............................................................................................................TGAGTAAAATTTCAGGTGTGTGA............................................................ 23 1 1 9.00 9 8 0 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTCTGA............................................................ 24 1 1 9.00 9 7 2 0 0
............................................................................................................TTGAGTAAAATTTCAGGTGTGTG............................................................. 23 1 1 9.00 9 6 1 1 1
............................................................................................................TTGAGCAAAATTTCAGCTGTGTGA............................................................ 24 1 1 9.00 9 5 3 1 0
.............................................................................................................TGAGCAAAATTTCAGGTGCGTGA............................................................ 23 1 1 8.00 8 2 5 1 0
...........................................................................................................CTTGAGCAAAATTTCAGGTGTGT.............................................................. 23 1 1 8.00 8 0 4 4 0
............................................................................................................TTGAGCAAAATTTCAGTTGTGTG............................................................. 23 1 1 8.00 8 2 2 4 0
............................................................................................................TTGAGCAAAATTTCAGGAGTGTGA............................................................ 24 1 1 8.00 8 2 2 4 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGCG............................................................. 23 1 1 8.00 8 2 4 1 1
............................................................................................................TTGGGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 8.00 8 1 2 4 1
.............................................................................................................TGAGCAAAATTTCAGGCGTGTGA............................................................ 23 1 1 8.00 8 4 3 1 0
.............................................................CGCGCCTGTATCTTGCTGAACC............................................................................................................. 22 0 1 8.00 8 8 0 0 0
............................................................................................................TTGAGCATAATTTCAGGTGTGTGA............................................................ 24 1 1 8.00 8 7 1 0 0
............................................................................................................TCGAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 8.00 8 0 6 1 1
............................................................................................................TTGAGCAAAATTTCAGTTGTGT.............................................................. 22 1 1 8.00 8 0 4 4 0
............................................................................................................TTGAGCAAAATTTCCGGTGTGT.............................................................. 22 1 1 8.00 8 0 6 2 0
............................................................................................................TTGAGCAAAGTTTCAGGTGTGT.............................................................. 22 1 1 8.00 8 2 4 2 0
.............................................................................................................CGAGCAAAATTTCAGGTGTGTGA............................................................ 23 1 1 7.00 7 4 0 3 0
............................................................................................................TTGAGCAAAATTTTAGGTGTGTG............................................................. 23 1 1 7.00 7 7 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGGGTGT.............................................................. 22 1 1 7.00 7 0 3 4 0
.............................................................................................................TGAGCAAAAATTCAGGTGTGTGA............................................................ 23 1 1 7.00 7 7 0 0 0
............................................................................................................TTGGGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 7.00 7 3 2 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTAA............................................................ 24 1 1 7.00 7 1 0 6 0
............................................................................................................TTGAGCAAAATTTCAGCTGTGTG............................................................. 23 1 1 7.00 7 1 1 5 0
............................................................................................................TTGAGCAAAAATTCAGGTGTGTG............................................................. 23 1 1 7.00 7 6 0 1 0
............................................................................................................TTGACCAAAATTTCAGGTGTGTG............................................................. 23 1 1 7.00 7 5 2 0 0
............................................................................................................TCGAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 7.00 7 2 2 3 0
............................................................................................................GTGAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 7.00 7 4 1 2 0
............................................................................................................TTGAGCAAAATTTCTGGTGTGTG............................................................. 23 1 1 7.00 7 5 1 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTATGA............................................................ 24 1 1 6.00 6 3 1 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGAGA............................................................ 24 1 1 6.00 6 3 3 0 0
............................................................................................................TTAAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 6.00 6 3 0 2 1
.............................................................................................................TGAGCAAAATTTCAGGTGAGTGA............................................................ 23 1 1 6.00 6 0 6 0 0
............................................................................................................TTGCGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 6.00 6 2 3 0 1
............................................................................................................TTGAGCAAAATTTCAGGTGCGTG............................................................. 23 1 1 6.00 6 1 3 2 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAC........................................................... 24 1 1 6.00 6 2 3 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGGGTGA............................................................ 24 1 1 6.00 6 1 2 1 2
............................................................................................................TTGAGCAAAATTTCATGTGTGT.............................................................. 22 1 1 6.00 6 0 4 2 0
............................................................................................................CTGAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 6.00 6 1 5 0 0
.............................................................................................................TGAGCAAAATTTTAGGTGTGTGA............................................................ 23 1 1 6.00 6 5 1 0 0
..............................................................................................................GAGCAAAATTTCAGGTGTGTG............................................................. 21 0 1 6.00 6 2 2 0 2
............................................................................................................TTGAGCAAGATTTCAGGTGTGTG............................................................. 23 1 1 5.00 5 2 2 1 0
............................................................................................................TTGAGCAAAATTTCATGTGTGTG............................................................. 23 1 1 5.00 5 1 0 3 1
............................................................................................................TTGAGCAAAATATCAGGTGTGTGA............................................................ 24 1 1 5.00 5 4 1 0 0
.............................................................................................................TGAGCAAAATTTCCGGTGTGTGA............................................................ 23 1 1 5.00 5 3 1 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGAGT.............................................................. 22 1 1 5.00 5 0 1 4 0
............................................................................................................GTGAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 5.00 5 1 2 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGAGTGA............................................................ 24 1 1 5.00 5 0 0 5 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGCGA............................................................ 23 1 1 5.00 5 2 1 2 0
............................................................................................................TTGCGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 5.00 5 0 3 1 1
............................................................................................................TTGAGCAAAATTTCAGGTGGGT.............................................................. 22 1 1 5.00 5 0 1 1 3
.............................................................................................................TGAGCAAAATTTCAGGTGCGTG............................................................. 22 1 1 5.00 5 1 4 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.......................................................... 26 2 1 5.00 5 2 2 1 0
............................................................................................................TTCAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 5.00 5 0 4 1 0
............................................................................................................TTTAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 5.00 5 0 2 3 0
............................................................................................................TTCAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 5.00 5 2 1 2 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAGT.......................................................... 25 1 1 5.00 5 3 1 1 0
............................................................................................................TTGAGCAAAACTTCAGGTGTGT.............................................................. 22 1 1 5.00 5 1 3 1 0
............................................................................................................TTGAGCAAAATTTCAGGTATG............................................................... 21 1 1 5.00 5 0 3 2 0
............................................................................................................TTGAGCGAAATTTCAGGTGTGT.............................................................. 22 1 1 5.00 5 0 3 1 1
............................................................................................................TTGAGCAACATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 3 1 0
............................................................................................................TTGAGCAAAATCTCAGGTGTGTG............................................................. 23 1 1 4.00 4 3 1 0 0
............................................................................................................TTGAGCAAAATTTCAGGCGTG............................................................... 21 1 1 4.00 4 0 3 1 0
............................................................................................................TTGAGCAAAATTTAAGGTGTGT.............................................................. 22 1 1 4.00 4 1 2 1 0
..................................................................................CGCTGCCATCATGGCCAACGATCCGGT................................................................................... 27 0 1 4.00 4 3 0 1 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGC............................................................ 23 1 1 4.00 4 0 3 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGTGA.......................................................... 26 1 1 4.00 4 3 1 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTATG............................................................. 23 1 1 4.00 4 2 1 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGAGTG............................................................. 23 1 1 4.00 4 1 0 3 0
............................................................................................................TTGAGCAAAATTTCACGTGTGTG............................................................. 23 1 1 4.00 4 1 2 1 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGTT........................................................... 24 2 1 4.00 4 0 2 2 0
............................................................................................................TTGAGCAAAATTTCCGGTGTGTG............................................................. 23 1 1 4.00 4 2 1 1 0
............................................................................................................TTGATCAAAATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 1 3 0
............................................................................................................TGGAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 3 0 1
............................................................................................................CTGAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 4.00 4 1 1 2 0
.............................................................................................................TGAGCAAAATTTCACGTGTGTGA............................................................ 23 1 1 4.00 4 3 0 1 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGG............................................................ 23 1 1 4.00 4 2 0 2 0
............................................................................................................TTGAGAAAAATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 1 2 1
............................................................................................................TTGAGCAAAATTCCAGGTGTGTG............................................................. 23 1 1 4.00 4 0 2 2 0
............................................................................................................TTGAGCGAAATTTCAGGTGTGTG............................................................. 23 1 1 4.00 4 1 2 1 0
............................................................................................................ATGAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 4.00 4 0 0 3 1
............................................................................................................TTGAGCAAAATTTCAAGTGTGTGA............................................................ 24 1 1 4.00 4 2 2 0 0
............................................................................................................TTGCGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 1 1 2
............................................................TCGCGCCTGTATCTTGCTGA................................................................................................................ 20 0 1 4.00 4 0 1 2 1
............................................................................................................ATGAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 4.00 4 2 0 1 1
............................................................................................................TTGAGCAAAATTTCAGGTGTGG.............................................................. 22 1 1 4.00 4 0 3 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGA................................................................ 20 1 1 4.00 4 4 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGTA........................................................... 25 2 1 4.00 4 1 3 0 0
............................................................................................................TTGAGCAAAATTTGAGGTGTGTGA............................................................ 24 1 1 4.00 4 3 1 0 0
.............................................................................................................TGAGCAAAACTTCAGGTGTGTGA............................................................ 23 1 1 4.00 4 2 1 1 0
.............................................................................................................TGACCAAAATTTCAGGTGTGTGA............................................................ 23 1 1 4.00 4 3 0 1 0
............................................................................................................TTGAGCAAAATCTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 4 0 0
............................................................................................................TTGAGCAAAATTTCAGGTG................................................................. 19 0 1 4.00 4 1 0 2 1
............................................................................................................TTGACCAAAATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 1 2 1
.............................................................................................................TGAGCAAGATTTCAGGTGTGTGA............................................................ 23 1 1 4.00 4 3 0 1 0
............................................................................................................TTGAGCAAAATTTCAGGTCTGTGT............................................................ 24 2 1 4.00 4 0 3 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.......................................................... 26 2 1 4.00 4 1 1 2 0
.............................................................................................................TGAGCAAAGTTTCAGGTGTGTGA............................................................ 23 1 1 4.00 4 2 0 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGGGA............................................................ 24 1 1 4.00 4 3 1 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGGGTG............................................................. 23 1 1 4.00 4 1 1 1 1
............................................................TCGCGCCTGTATCTTGCTGAA............................................................................................................... 21 0 1 4.00 4 3 1 0 0
.............................................................................................................TGAGCAAAATTCCAGGTGTGTGA............................................................ 23 1 1 4.00 4 4 0 0 0
............................................................................................................TTGAGCAGAATTTCAGGTGTGT.............................................................. 22 1 1 4.00 4 0 3 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTCTG............................................................. 23 1 1 4.00 4 2 1 1 0
............................................................................................................TTGAGCAAGATTTCAGGTGTGT.............................................................. 22 1 1 3.00 3 1 1 1 0
............................................................................................................TTGATCAAAATTTCAGGTGTGTG............................................................. 23 1 1 3.00 3 0 1 2 0
............................................................................................................TTGAGCCAAATTTCAGGTGTGTGA............................................................ 24 1 1 3.00 3 1 1 1 0
...........................................................................................................CTTGAGCAAAATTTCAGGTGTGTG............................................................. 24 1 1 3.00 3 1 1 1 0
............................................................................................................TTGAGCAAAATTTTAGGTGTGT.............................................................. 22 1 1 3.00 3 0 0 2 1
.............................................................................................................TGAACAAAATTTCAGGTGTGTGA............................................................ 23 1 1 3.00 3 1 0 2 0
.............................................................................................................TGAGCAAAATTTCAGGTCTGTGA............................................................ 23 1 1 3.00 3 2 0 1 0
.............................................................................................................TGAGCAAAATATCAGGTGTGTGA............................................................ 23 1 1 3.00 3 3 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGCT........................................................... 25 2 1 3.00 3 0 2 0 1
............................................................................................................TTGAGCAAAATTTCGGGTGTGT.............................................................. 22 1 1 3.00 3 0 2 1 0
.............................................................................................................TGAGCAAAATCTCAGGTGTGTGA............................................................ 23 1 1 3.00 3 0 2 1 0
............................................................................................................TTGAGCAAATTTTCAGGTGTGTGA............................................................ 24 1 1 3.00 3 3 0 0 0
............................................................................................................TTGAGTAAAATTTCAGGTGTGT.............................................................. 22 1 1 3.00 3 2 1 0 0
............................................................................................................TTGAGCAACATTTCAGGTGTGTGA............................................................ 24 1 1 3.00 3 3 0 0 0
.............................................................................................................TAAGCAAAATTTCAGGTGTGTGA............................................................ 23 1 1 3.00 3 1 1 1 0
.............................................................................................................TGAGCAAAATTTCAGGGGTGTGA............................................................ 23 1 1 3.00 3 2 1 0 0
.............................................................................................................TGAGCAAAATTTCAAGTGTGTGA............................................................ 23 1 1 3.00 3 3 0 0 0
............................................................................................................TTGAGCAAAATTTCAGATGTGTG............................................................. 23 1 1 3.00 3 3 0 0 0
............................................................................................................TTGAGCAAAACTTCAGGTGTGTG............................................................. 23 1 1 3.00 3 2 0 1 0
..............................................................................................................GAGCAAAATTTCAGGTGTGT.............................................................. 20 0 1 3.00 3 0 1 1 1
............................................................................................................TTGAACAAAATTTCAGGTGTGT.............................................................. 22 1 1 3.00 3 0 2 1 0
............................................................................................................TTGAGCCAAATTTCAGGTGTGT.............................................................. 22 1 1 3.00 3 0 1 0 2
.............................................................................................................TGAGCAAAATTTCTGGTGTGTGA............................................................ 23 1 1 3.00 3 3 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGAGTGTG............................................................. 23 1 1 3.00 3 0 1 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTTTG............................................................. 23 1 1 3.00 3 0 1 2 0
............................................................................................................TTGTGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 3.00 3 3 0 0 0
............................................................................................................TTTAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 3.00 3 0 0 3 0
............................................................................................................TTGAGCACAATTTCAGGTGTGTG............................................................. 23 1 1 3.00 3 1 1 1 0
.............................................................................................................TGAGCAAAATTTCAGTTGTGTGA............................................................ 23 1 1 3.00 3 2 1 0 0
..............................................................GCGCCTGTATCTTGCTGAACC............................................................................................................. 21 0 1 3.00 3 3 0 0 0
............................................................................................................CTGAGCAAAATTTCAGGTGTGTGT............................................................ 24 2 1 3.00 3 0 1 2 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC........................................................... 25 1 1 3.00 3 3 0 0 0
............................................................................................................TTAAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 3.00 3 0 1 2 0
.............................................................................................................TGAGCAAAATTTCAGCTGTGTGA............................................................ 23 1 1 3.00 3 2 1 0 0
............................................................................................................TTGAGCAAAATTTCACGTGTGT.............................................................. 22 1 1 3.00 3 0 2 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTCA............................................................ 24 1 1 3.00 3 2 1 0 0
............................................................................................................TTGAGCAAAAATTCAGGTGTGT.............................................................. 22 1 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTCCAGGTGTGT.............................................................. 22 1 1 2.00 2 0 2 0 0
............................................................................................................TTGAGCTAAATTTCAGGTGTGTGA............................................................ 24 1 1 2.00 2 2 0 0 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGCTT.......................................................... 25 3 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAATATTTCAGGTGTGTG............................................................. 23 1 1 2.00 2 1 0 1 0
............................................................TCGCGCCTGTATCTTGCTGAACA............................................................................................................. 23 1 1 2.00 2 1 0 0 1
............................................................................................................TTGAGCACAATTTCAGGTGTGT.............................................................. 22 1 1 2.00 2 0 2 0 0
............................................................................................................TTGAACAAAATTTCAGGTGTGTGT............................................................ 24 2 1 2.00 2 0 1 1 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAGA.......................................................... 25 0 1 2.00 2 1 0 1 0
............................................................................................................TTGAGAAAAATTTCAGGTGTG............................................................... 21 1 1 2.00 2 0 1 1 0
.............................................................................................................TGAGCAAAATTTCAGGTGTGTGAAC.......................................................... 25 2 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTTCAGGTTTG............................................................... 21 1 1 2.00 2 0 1 0 1
............................................................................................................TTGAGCAAAATTTAAGGTGTGTG............................................................. 23 1 1 2.00 2 1 0 1 0
............................................................................................................TTGAGTAAAATTTCAGCTGTGTG............................................................. 23 2 1 2.00 2 2 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGTCTGTGAT........................................................... 25 2 1 2.00 2 0 2 0 0
............................................................................................................TTGAGCACAATTTCAGGTGTGTGA............................................................ 24 1 1 2.00 2 2 0 0 0
.............................................................................................................TGAGCAAAATTTCAGGTGTTTGA............................................................ 23 1 1 2.00 2 0 0 1 1
............................................................................................................ATGAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 2.00 2 0 1 1 0
.............................................................................................................TGAGCAAAATTTCAGGAGTGTGA............................................................ 23 1 1 2.00 2 1 1 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTAT.............................................................. 22 1 1 2.00 2 0 1 1 0
............................................................................................................TTGAGCCAAATTTCAGGTGTG............................................................... 21 1 1 2.00 2 0 0 1 1
.............................................................................................................TGAGCAAAATTTCAGGTGTGTT............................................................. 22 1 1 2.00 2 0 1 1 0
............................................................................................................TTGAGCATAATTTCAGGTGTGTG............................................................. 23 1 1 2.00 2 2 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGTATGTGT............................................................ 24 2 1 2.00 2 0 1 1 0
............................................................................................................TTGAGCAAAATTTCAGGAGTGT.............................................................. 22 1 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAAAATTTCAGGTATGTT............................................................. 23 2 1 2.00 2 0 2 0 0
.............................................................................................................TGAGCAAAATTTCAGGCGTGTG............................................................. 22 1 1 2.00 2 1 1 0 0
............................................................................................................GTGAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 2.00 2 1 1 0 0
.............................................................................................................TTAGCAAAATTTCAGGTGTGT.............................................................. 21 1 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAAAATTTCGGGTGTGTGT............................................................ 24 2 1 2.00 2 0 1 1 0
.............................................................................................................TGAGCAAAATTTCAGCTGTGTG............................................................. 22 1 1 2.00 2 0 2 0 0
.............................................................................................................TTAGCAAAATTTCAGGTGTGTG............................................................. 22 1 1 2.00 2 0 0 2 0
.............................................................................................................TGAGCGAAATTTCAGGTGTGTGA............................................................ 23 1 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTTCAGGGGTGTGT............................................................ 24 2 1 2.00 2 0 2 0 0
............................................................................................................TGGAGCAAAATTTCAGGTGTGTGA............................................................ 24 1 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTTCTGGTGTG............................................................... 21 1 1 2.00 2 0 1 1 0
.............................................................................................................TGAACAAAATTTCAGGTGTGTG............................................................. 22 1 1 2.00 2 1 0 0 1
............................................................................................................TTGAGCAAAATTTCAGATGTGT.............................................................. 22 1 1 2.00 2 0 1 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGTAT............................................................ 24 2 1 2.00 2 0 1 1 0
.............................................................................................................TGAGCAAAATTTCAGGTTTGTGA............................................................ 23 1 1 2.00 2 0 1 1 0
............................................................................................................TTGAGCAAAAATTCAGGTGTGTGT............................................................ 24 2 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTTCATGTGTG............................................................... 21 1 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAAAATTTCAGGACTGTGA............................................................ 24 2 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAAAATTTCAGGTTTGTGT............................................................ 24 2 1 2.00 2 0 2 0 0
............................................................................................................TCGAGCAAAATTTCAGGTGTGTGT............................................................ 24 2 1 2.00 2 0 2 0 0
............................................................................................................TTGAGCAATATTTCAGGTGTGT.............................................................. 22 1 1 2.00 2 0 1 1 0
.............................................................................................................TGAGCATAATTTCAGGTGTGTGA............................................................ 23 1 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTTCGTGTGTGTG............................................................. 23 2 1 2.00 2 0 2 0 0
............................................................TCGCGCCTGTATCTTGCTGAACCG............................................................................................................ 24 0 1 2.00 2 2 0 0 0
.............................................................CGCGCCTGTATCTTGCTGAAC.............................................................................................................. 21 0 1 2.00 2 2 0 0 0
.............................................................................................................TGAGCAAAATTTCAGGTGT................................................................ 19 0 1 2.00 2 0 1 0 1
............................................................................................................TTGAGCAAAATTACAGGTGTGTGA............................................................ 24 1 1 2.00 2 2 0 0 0
.............................................................................................................TGATCAAAATTTCAGGTGTGTGA............................................................ 23 1 1 2.00 2 1 0 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTTT.............................................................. 22 1 1 2.00 2 0 1 1 0
............................................................................................................TTGAGCAAAATTTCAGGTGTT............................................................... 21 1 1 2.00 2 0 0 1 1
............................................................................................................TTGAGCAAAATTTCAAGTGTGTG............................................................. 23 1 1 2.00 2 2 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGTGTGAA............................................................. 23 2 1 2.00 2 2 0 0 0
............................................................................................................TTGAGCAAAATTTCAGCTGTGT.............................................................. 22 1 1 2.00 2 0 2 0 0
.............................................................................................................TGAGCAAAATTTCAGGTGCGTGT............................................................ 23 2 1 2.00 2 0 1 1 0
............................................................................................................TAGAGCAAAATTTCAGGTGTGT.............................................................. 22 1 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAATATTTCAGGTGTGTGA............................................................ 24 1 1 2.00 2 2 0 0 0
.............................................................................................................TGAGAAAAATTTCAGGTGTGTGA............................................................ 23 1 1 2.00 2 1 0 0 1
............................................................................................................TTGAGCAAAATTTCAGGTGTCT.............................................................. 22 1 1 2.00 2 0 0 2 0
............................................................................................................TTGAGCAAACTTTCAGGTGTGTG............................................................. 23 1 1 2.00 2 1 1 0 0
.............................................................................................................TGAGCAAAATTTCAGATGTGTGA............................................................ 23 1 1 2.00 2 2 0 0 0
............................................................................................................TTGAGCAAAATTTCAGGTAT................................................................ 20 1 1 2.00 2 0 2 0 0
............................................................................................................TTGATCAAAATTTCAGGTGTGTGT............................................................ 24 2 1 2.00 2 1 1 0 0
.............................................................................................................TGCGCAAAATTTCAGGTGTGTGA............................................................ 23 1 1 2.00 2 1 1 0 0
............................................................................................................TTGAGCAAACTTTCAGGTGTGT.............................................................. 22 1 1 2.00 2 0 2 0 0
............................................................................................................TTGAGCAAAATTTCATGTGTGTGT............................................................ 24 2 1 2.00 2 0 2 0 0
............................................................................................................TTAAGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 2.00 2 2 0 0 0
............................................................................................................TTGTGCAAAATTTCAGGTGTGTG............................................................. 23 1 1 1.00 1 1 0 0 0
.............................................................................................................TTAGCAAAATTTCAGGTGTGTCA............................................................ 23 2 1 1.00 1 0 0 1 0
............................................................................................................TTCAGCAAAATTTCAGGTGTG............................................................... 21 1 1 1.00 1 0 1 0 0
.............................................................................................................TGAGCAAAATTTCAAGTGTGTGT............................................................ 23 2 1 1.00 1 0 0 1 0
............................................................CCGCGCCTGTATCTTGCTGAACC............................................................................................................. 23 1 1 1.00 1 1 0 0 0

Anti-sense strand reads

GAATTTACCACTAAGTAAAGCAGGACCGACTGTTGGTTCAGGAAACCGCCGTGTAAAGTAAGCGCGGACATAGAACGACTTGGCGACGGTAGTACCGGTTGCTAGGCCAACTCGTTTTAAAGTCCACACACTCTTTACACAAATCGTAAGTAGCCTCCTAAATAGTCTGACCACTAGTAAAGGCCACTCATA

*********************************************.((((((((((((...((((((((.((.(((((.(((((..((((...))))........))))).))))).))..))))))))...))))))))))..)).********************************************* 		Read size # Mismatch Hit Count Total Norm Total M054

female body

 V114

embryo
.......................................................................AGAAACACTTGGCGATGGTAG.................................................................................................... 21 3 3 0.33 1 1 0
...............GAAAGCAGGACCGAATGT............................................................................................................................................................... 18 2 13 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_3:5397097-5397288 - dse-mir-87 Known_mirbase CTTAAATG-GTGATTCATTTCGTCCTGGCTGA---C-----------A-AC-------CAAGTCC-TT--TGGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCATC-ATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGGA--T---------TTATCAGACTG----------------------------GTGATCATT-TCCGGTGAGTAT---
droSim2 2l:9648350-9648563 - dsi-mir-87 Known_mirbase CTTAAATG-GTGATTAATTTCGTCCTGGCTGA---C-----------A-CT-------TAAGTCC-TT--TGGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCATC-ATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGGA--T---------TTTCCAGTCTGGTAAA---G-TGA-TGGGGCTTGA-ATGGAGATCATT-TCCGGTGAGTAT---
dm3 chr2L:9950350-9950563 - dme-mir-87 Known_mirbase GT-ACATG-GTGATTCATTTCGTCCTCGTTGA---C-----------A-CC-------AAAGTCC-TT--TGGCAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCATT-ATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGAA--T---------TTTCCAGTTTGGTAAA---G-TGA-ATCGGCTTAA-ATGGAGATCATTTTCTGGTAAATAT---
droEre2 scaffold_4929:10570478-10570690 - der-mir-87 Known_mirbase CCTACTTG-GTGATTCATTT-GTCCTTGCTGA---------------A-CA-------CGAGTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCATT-ATGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATCGGACGA--T---------TTTCAAGTCTGGTACC---G-CGA-TGCGTCTTAA-GGGGAGGTCATTTTCTGGTGAGTAT---
droYak3 2L:12640914-12641126 - dya-mir-87 Known_mirbase TCTACTTG-GTGATTCATTT-GTCCTGGTTGT---------------G-TC-------CAAGTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAATT-ATGGTCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATCGGAGGA--T---------TTGCAAAGTTGGTAAA---G-CAA-TGCGGCTTGG-GTGGAGATCCTTATCTGGTGAGTAT---
droEug1 scf7180000409554:4961882-4962078 + T------G-GTGGATTATTT-GTCCTGACTAA---------------A-TT-------TAAGTCC-TT--TAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATA-TTGGCCCAAG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCGAAGGA--T---------TTCTA------------AA-AGGA-TAA-GTTTGT-AGAGTGATCTTTATCTGGTATGTAT---
droBia1 scf7180000301468:52227-52423 - GTGATGTG-GTGACTCATGT-ATCCTTGGTGT---------------ATCCA------AAAATCC--T--AGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCACT-TTGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCTTTCATCGAGGGA--T---------GACGAAGT---------------------TCTTATAGGGGGAGTC-CT-ATTGGTAAGTGT---
droTak1 scf7180000415667:562536-562728 + CTT----G-GTGATTCATTT-ATCCTGAGTGA---------------ACCTTACT---TAAA----TT--AAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCACT-TTGGCCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAACCATCGAGGGA--T---------TTAA----------------A--------TCATATAGGAGGAATCTTTATTCGGTAAGTGT---
droEle1 scf7180000491186:3003930-3004130 - TCTAAATGTGTGATTCATCT-GGGCT---------------------------------AGCTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTTACCATA-TTGGCCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCAAAAAAGTGTT-------CCC------------GAA-AAAA-TATGGTTT---AAGGAGATCTTTTTCTGGTGAGTATGAC
droRho1 scf7180000779234:243616-243821 + CTTGGTTG-GTGATTCATCT-GTGCTTAGTGG---------------A-CT-------ACAGTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATA-TTGGCCATCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCACGAAAGTGTT-------CTG------------GAA-ACGA-TATGGT--AC-AAGGAGATCTTTTCCTGGTAAATAT---
droFic1 scf7180000449513:59-262 + CTTCAGTA-GTGATTCATACAGTTTTTGC---------------------CA------AAACTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCAATATTGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCAACTGTAAAACCGAT-------TTG------------GCAG-AGA-TTTTACTT---ATGGAAATATTTTTCTGGTGAGTAA---
droKik1 scf7180000302677:173612-173827 + GTGAGTTG-ATGATTCATAC-ATCCTTTGTGGAATT-----------A-TT-------ATAATCC-TT-CGGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATT-TGGGCCTACA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTCAATGGG--T---------TTTTCTTTCGG--CGG---C-TACATAT-ACTTTG-GGAGAGATCAGCTTTTGGTGAGTAT---
droAna3 scaffold_12916:13789731-13789911 - dan-mir-87 Known_mirbase GTGA---------AGCATAG-ATTCTGGATTT---------------A-AG-------TGAATCC-TTTCAAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCGAT-ATGGCACAGA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTCAAAAGA--TAGTTTGGAATAC-------------------------------A-ATCGAGATCTTT-------GA--GT---
droBip1 scf7180000396535:753792-753948 - TTTAAGTG-AAGAA------------------------------------------------TCC-TTTCAAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAAT-GTGGCACACA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCATCAAATGA--TAGTTTGGAGTAC-------------------------------A-ATCGAG-----------------GT---
dp5 4_group3:220087-220224 + dps-mir-87 Known_mirbase T------G-GAGATTT------TCC---TTGA---CATCCTAC--------------------CG-TG--TGCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCATA-ATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----------------------------------------------------------------------------------
droPer2 scaffold_1:1694886-1695025 + dpe-mir-87 Known_mirbase CTTA-----GAGATTT------TCC---TTGA---CATCCTAC--------------------CG-TG--TGCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCATA-ATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----------------------------------------------------------------------------------
droWil2 scf2_1100000004521:12257650-12257850 - dwi-mir-87-1 Known_mirbase TGTCTGTG-T------------CCC---TGTG---TATCCTTCATGGTTCCAATCAAAATTAACA-TT-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAATTGTGATCATCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATCGTTGGA--A---------TACCC-------------------------CAAAC-GAAGTGATCAAA-TATTGTGAAAAT---
droVir3 scaffold_12723:3996215-3996344 + dvi-mir-87 Known_mirbase AACAGGA-----GTTCATCT-T-TCT----GGTGC-------------------------TATCCCTT--GGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAATT-GAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT----------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:14729859-14729989 - dmo-mir-87 Known_mirbase ATTT---G-G---------------------GAGC-------------------------TATCC-TT--AGCCGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAATT-GTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATCAAAG------------------------------------------------------------------------------
droGri2 scaffold_15252:3661309-3661445 - dgr-mir-87 Known_mirbase TCTCT----------C-----ACTCTCTGTGGTGT-------------------------TATCC-TT--GACCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATT-GTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATC----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CTTAAATG-GTGATTCATTTCGTCCTGGCTGA---C-----------A-AC-------CAAGTCC-TT--TGGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCATC-ATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGGA--T---------TTATCAGACTG----------------------------GTGATCATT-TCCGGTGAGTAT---SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................24119236.00192362724012121942758
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2316199.006199132222221101735
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2215249.00524916728862581938
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2313346.003346726461921707
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241888.008882044769352
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221837.0083735304174324
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211731.007312535241313
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211260.00260211137119
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................231186.00186221820
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................231173.00173682679
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201138.00138269661
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................251130.001307337218
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................221106.001063275719
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................251103.001033473419
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22178.007846608
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24160.0060483513
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................24140.0040372010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24132.003216214
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23126.002601628
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20123.002325214
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................24122.002231153
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................22119.00193583
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24118.00180738
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTTGA........................................................................................................23113.00130094
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................21113.00130292
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................23112.00120345
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................22112.00120903
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................25111.00110191
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................25110.00101612
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................23110.00100442
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2218.0080080
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2416.0060321
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2116.0062220
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2615.0050221
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAGT.....................................................................................................2515.0050131
............................................................................................................CGC-TGCCATC-ATGGCCAACG-ATCCGGT..............................................................................................................................2714.0040031
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2314.0040301
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2414.0040202
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2314.0040022
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................2014.0041102
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................2214.0040301
.........................................................................................................................................TTGAGCAAAATTTCAGGTGA...........................................................................................................2014.0040040
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTA......................................................................................................2514.0040310
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................1914.0041012
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2614.0040112
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2114.0040130
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGCT......................................................................................................2513.0031200
...........................................................................................................................................GAGCAAAATTTCAGGTGTGT.........................................................................................................2013.0031101
........................................................................................GCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2113.0030030
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2513.0030030
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGCTT.....................................................................................................2512.0020002
......................................................................................TCGCGCCTGTATCTTGCTGAACA...........................................................................................................................................................2312.0021010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAGA.....................................................................................................2512.0020011
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAC.....................................................................................................2512.0020011
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................2212.0020101
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTAT.......................................................................................................2412.0020101
......................................................................................TCGCGCCTGTATCTTGCTGAACCG..........................................................................................................................................................2412.0020020
.......................................................................................CGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2112.0020020
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1912.0021100
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTT..........................................................................................................2112.0021001
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGAA........................................................................................................2312.0020020
droSim2
CTTAAATG-GTGATTAATTTCGTCCTGGCTGA---C-----------A-CT-------TAAGTCC-TT--TGGCGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCATC-ATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGGA--T---------TTTCCAGTCTGGTAAA---G-TGA-TGGGGCTTGA-ATGGAGATCATT-TCCGGTGAGTAT---SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................24115466.00154661552057114328133273233741149111698593746000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2313906.0039069510201297329171110265301893100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2312130.00213028917394761267571634122200000
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2311945.001945347371527001772401300000
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................221822.0082230747270100558230210801000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................221587.00587268301749201053331127600000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221351.003511468631626325719200000
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................191302.0030277172203814700001000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211265.0026578183971685000051700000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................241232.00232435169100001101200000
.........................................................................................................................................TTGAGCAAAATTTCAGGT.............................................................................................................181208.0020800003217400002000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................241162.001621205200367216130600000
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................201116.00116839700074230010000
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................221111.001111109600022000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................24195.00952038900200015101000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................20187.00871001127000002100000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................23179.0079836700000000100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25179.0079102600102218901001000
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................21174.007417050001722940000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................21173.00733780422010000100000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20164.006425220131300000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................22161.0061546100000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTG............................................................................................................18155.0055617063500000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................22141.0041326300000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24138.0038505000021112300000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25127.0027101900000010600000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23125.0025172100000000500000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................24123.0023123400000110200000
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................19123.0023000041900000000000
........................................................................................GCGCCTGTATCTTGCTGAACC...........................................................................................................................................................21118.0018121400001000000000
......................................................................................TCGCGCCTGTATCTTGCTGG..............................................................................................................................................................20118.0018161100000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22113.001320210033200000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23112.001241000003000400000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGG.........................................................................................................21110.001081100000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGC.........................................................................................................2119.00981000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAACA...........................................................................................................................................................2319.00931200012000000000
.........................................................................................................................................TTGAGCAAAATTTCAGG..............................................................................................................1718.00800000001016000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2318.00840000000000400000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2418.00800000004010300000
............................................................................................................CGC-TGCCATC-ATGGCCAACG-ATCCGGT..............................................................................................................................2718.00821410000000000000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................2217.00700010000000600000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAGT.....................................................................................................2517.00700500000010100000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................2116.00610000022000100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2516.00640200000000000000
.............................................................................................................GC-TGCCATC-ATGGCCAACG-ATCCGG...............................................................................................................................2516.00600300010000200000
......................................................................................TCGCGCCTGTATCTTGCTGAAA............................................................................................................................................................2216.00651000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAACT...........................................................................................................................................................2315.00530200000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2415.00500300000100100000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2515.00520300000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTTGA........................................................................................................2314.00400000012010000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2514.00400000100000300000
.............................................................................................................GC-TGCCATC-ATGGCCAACG-ATCCG................................................................................................................................2413.00300200010000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................2313.00310000000001100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2313.00310000010000100000
......................................................................................TCGCGCCTGTATCTTGCTGAACCG..........................................................................................................................................................2413.00301200000000000000
.......................................................................................CGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2113.00310200000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGACT.....................................................................................................2612.00210100000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAACCT..........................................................................................................................................................2412.00210100000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTA........................................................................................................2212.00210000000000100000
......................................................................................TCGCGCCTGTATCTTGCTG...............................................................................................................................................................1912.00210010000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATTT....................................................................................................2712.00220000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAGA.....................................................................................................2512.00200001000100000000
.............................................................................................................................................GCAAAATTTCAGGTGTGTGA.......................................................................................................2012.00200010001000000000
..............................................................................................................................................CAAAATTTCAGGTGTGTGA.......................................................................................................1912.00200000001010000000
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1812.00200000000001100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGAT........................................................................................................2312.00220000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGG...........................................................................................................2012.00211000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................2211.00110000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAGT.....................................................................................................2611.00100000000000100000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2411.00110000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2411.00100010000000000000
.............................................................................................................................................GCAAAATTTCAGGTGTGTG........................................................................................................1911.00100000000001000000
dm3
GT-ACATG-GTGATTCATTTCGTCCTCGTTGA---C-----------A-CC-------AAAGTCC-TT--TGGCAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCATT-ATGGCCAACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATCGGAGAA--T---------TTTCCAGTTTGGTAAA---G-TGA-ATCGGCTTAA-ATGGAGATCATTTTCTGGTAAATAT---SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................241181065.001810650000000001000000002038466150016309172623673212729981254244053283287157968222745214648647627941291100001541814800000000000000000000032154495200042934132201251917942485128125197794190000004916193290361311015838311131004604127101437800009257701917171910187595191664115948862218561021388000002001565776070444204842018275104008464803006709431523526310639181649992882570500213591991699473133465161154311663124960460636129897542764768123627100043010001992129115542621220196522315061130111628100001015010601072650572116217915552931747251220412111389953140038123334389623479282149651054921602383943690246411174310608267252133401241212674936841761138299534262338351521412
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................23156653.00566530000000000000000000031032310911220878993308643843127126213114354102325015125196152965172600073862300000000000000000000018007500003204325116261232529165128412000000564480534360150562428626400000000004213262181001441021877607551754002571010000010011034756042031110688223436455600514014103761302432667443711520400000176332010654702145213322462871006734533566130339146175200100006784620182250500141716303070801110420000000300220008153752226115201878100362376755288432338894363659721674553204215201614165801383143152212300018010151560663579871401535782141227060
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................22142109.00421090000000000000000000053164709142321571381201630633102139682142141843948254570004030600000000000000000000020200210064214402462912511132464342140000007241806041171801693504456738000000000000700252226271231633068641800000600760209214012412271733179416802261100070652831314820248554430000091298270001712576551514513133107270401067581000100012911307533114001344238032300000696000010040001000122812221102822446296112000191622291731234222115262133010398117313291193004019351318011565542880340000200215226458225445574711531003404048
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................23130963.003096300003000010000000010611190004707671882014217722605844761211818746582497803971723000298080000000000000000000004310029292021325621261914407115314605772141675450000103314171980142355302202327110416439180000002220455803811641133183979825313253000000007001381690951011997768114114031140040234850451401862213865780000023235403241019251725647101231114473786315966797933621059200331229085660000271480119070004540000030400100001126167213121149306164000280408266334684779742499262282697691897860700647007941144253103000011003021014519157509480334020030
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................2216652.0066520000000000000000000011681030031126101657714101615383294112211896220001013100000000000000000000080013000322229022696751010372417000000912120300300000101022000000000010111015101113721055552450000000050046030108112340910005007111517565731512000001652050007514221291728812814220000000049530325310008436062030002180000010100000004280017783100015615012517563031278201928606936102032720063723200000001000140503373102389356194001020
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................2116563.00656300000000000000000000416710420202422121115465112035234250789415000343750000000000000000000002000000011231018314122113920000001101000160204270300300000000003120095106363231688000009002009170100002602432002010130071210131700010011800000800010004231916381453418519350260001100016340467720008942077030001440000000000000001096012265262200022021719728408839260161952217241011014000254441101000100102451084633109289265199012110
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................2415752.0057520000000000000000000010560020000000002818612635118390451583320000000000000000000000000001200010001034010353254034469000000000100135020127010116000000000000000513616342672727300000000000121101600115114280830000045411140002211600000261000000020851121441231132931100000000111102835000064170300200018510000001000000010690111203422100010014093112285813703223941031252031118400165122401000000100020195642887121276164200010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2511769.00176900000000000000000000006000000000000140002670120101127100000000000000000000000000001000000000040110417102330000000000020007402011202022000000000000000020164414200000000000171509000110304060000001712800001400000015000000010012601020432616224788600001810004202600002320600000140000000000000004232428414000001631282912518806164546510422300103319000000010002174459132010001010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................2511672.0016720000000000000000000002200000000000003111034042321119000000000000000000000000000000000000001210042841221500000002004000110000020503500000200000000001152119690000000000015220120019111011030000002022400020200000050000000000012121815113011015412541000188008502000002010701000800000002000000064501210215000001524815011260261382451024064260096715000000000001544188131112000010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................2111597.00159700000000000000000000004001000000000010200330300111600000780000000000000000000000200000002379001932500313438000000002000000000001020610000000000000000000410002000000000100390200313070704000000712010001020000001100000003155431100010100010000110560000151402100000280000100000000005120101272000092898511311214120252601112065620041410000000000482627013193727000010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................2411452.00145200000100000000000000012000000000000050430450720333151100000000000000000000000000020000000124711421426032520462000000402110401000012301001000000000000000151852211530000000000010409000100603040000000010101000100000002130110001003280134928549488133100015200840310000131070000060000000000000004302311262210000915864101312311113871319036190039841000000000000414421256000000
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2211231.0012310000010000000000000000510010000000014020002020100314300000000000000000000000000001000000000000047310217900000006004000000000000101100000011000000000014216121000000000002401000302022400000020301000000000000101000000000403611376607559191174900000000111002000001001000002000000000000000129804104715880000010010402006164111003500225414000000000001501341000009
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................2311046.00104600000000000000000000001500000000000030021214071121028000000000000000000000000000008000000000127101327200133800000020000001000002001043000000000000000220351101100000000200040100000101030000000011000001100000020000000100403012101001000000003007500007706000002700000001000000001501111400000292123260161170761702560393500651330000000000034184636193322000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201958.009580000000000000000000000400030008100000202013103000104010001011300000000000000000000010010100000300210022200000000100001000000000001200000000000000003040550121000000000003202002120917013000000311000000000000002000010011175600401120000000000200510100061101000000100000000000000003171101230000042373764011920506104101212003230000000000055224591171818000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAATC....................................................................................................271820.008200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612208000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................241711.007110000000000000000000010400000000000012021115341113037169720000000000000000000000000000000010000001002000000200000000000003128010010060930000000000000001004610456000000000003300000000000000000000001000001300000103000000012111132613000000000011027100021010000020000000000000001370014130000043092100711002277139014180068200000000000815821065000000
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................231660.00660000010000400000100000001000100000000003000200010035100000000000000000000000000000000000000020043120077000000000060501000010201000000000000000000011100169200000000000320201010201204000000402100000000000060000100000484213343844228822450000000016120400000100201000000000001000000022301112217000000100050000415496021007224000000000002542201000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATC.....................................................................................................261615.006150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000457155000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................241605.006050000000000000000000000500000000000000000002030101040000000000000000000000000000000001000021910235151022392000000200300030000103000110000000000000000003121250000000000005301000603000000000002002000000000000400000000001030126151036283910018000200220000910500000900000000000000004020121110000516980251480141813150241500211100000000000051486242000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................231519.005190000000000000000000010700000000000009180330000202220000000000000000000000000000000000000000030023110001200000000000000301010101061000000000000110030486030100000100000020211010200000001000100110010000000010000000000021400254211200000000104022500001040200001500000000000000021000022600000913514025112032801100151500171930000000000012362451662000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................221307.00307000000000000000000000000000000000000000020002000000100000000000000000000000000000000000000010011100000100000000100000100000001002000000000000000000010032000000000000150400010114000120100011006000100000000940020000002210024100200000000005002100002102000001000000000000000060001030000114125131104100140170530003100000001000754131464000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................241267.0026700000000000000000000000000000000000120002050000016250000000000000000000000000000020001000001200200000030000000000000051010002000300000000000000000000003010000000000006601000101040000000010000000000000000101000000000000010212000000000052032000070020000040000000000000001300031200000314203411500572240420017310000000000515111752000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAATC....................................................................................................261261.00261000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................251189.00189000000000000000000000010000000000000100001000010124000000000000000000000000000000000000000000010100002000000000000001000000100001000000000000000000211000000000000000200000000000000000000001100000000000000000000000000002652711304110000101001001000001002000001000000000000000030001000000000010311001000101000050000000000002442020000000
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................211182.001820000200000000000000001000000000000000000000011010000000010000000000000000000000000000000000100302000070000000000000000000000010200000000000000000000000130000000000002201000102000000000111001000400000000000000000001021014361572000000000200000000000000001000000000000000618012101240000002020100000012301400560000000000002200100000000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGT.........................................................................................................231164.0016400000000000000000000000000000000000100000100000110200000000000000000000000000000000000000011002020000200000000002000000000000000000000000000000010101110020000000000010000000000000000000000000000010000000000000000010000124020100000000100000000010000000100000000000000007010101000002513039530019015070005151000000000001331221000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................231147.0014700000000000000000000001000000000000010100140101152100000000000000000000000000000000001000000100500000010000000000000024000002000310000000000000000002100011000000000000101000000000100000000000000000000000000000000000000000010000000000000004000010000000020000000000000000600010000000223103650007011903100110000000000000100011000000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................221132.001320000000000000000000000100000000000001000000000000120000002000000000000000000000000000000000000000000000000000000100000000000010100000000000000000000010000000000000001401000301110000000000000000000000000300300000000010054348230000000001001000000010000010000000000000000300110000000030001824001205307000272000000000001012121000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................241132.0013200000000000000000000002000000000000000000000010001310000000000000000000000000000000030000110002010010600000000000000000000010000000000000000000000000001151000000000000000000000000000000000000000000000000200000000000000144671017000021000100000000000000003000000000000000000012010000020210530011101305100503000000000000102100000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................231129.001290000000000000000000000100000000000001010001000100020000000000000000000000000000000000000001100000001210000000000100000000000000000000000000000001111420010000000000001201000100030000000000000000010000000000000000000020011100020000100011001000001030000010000000000000000000000000000242301220023114031007120000000000051832441001000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGATC.....................................................................................................251123.00123000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010122000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................221121.00121000000000000000000000000000000000000100000001000003000000000000000000000000000000000000010000000000001000000000000000100000000010000000000000000000000000000000000000010100000001010000000000000000000000000000000000010100000000000000000000100002201000001000000000000000012100100000004566030001441010041002200000000000031352126000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................231120.00120000000000000000000000000000000000000002100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100111000000000000000000000000000000000000000000000010000000000000100001002021000000000001101000004001000003000000000000000000001000000031360101000210111062001010000000000041681733000100
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................261114.0011400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000001010100000000000000000000010000000000000000000706360400005019001000000001000000000000000000000000000000000000000200001000200102000000000000000000201000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................251113.00113000000000000000000000000000000000000100000000000013000001510400000000000000000000000000000000000010000000000000000100000000000000000000000000000000000001000000000000001001000000000000000000002000000000000000000000001000054627230000000000000000001000000010000000000000000100020000000021001002000310205200020000000000000400012000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................24197.00970000000000000000000000000000000000000000001000000000000057300000000000000000000000000000100000101000020000000100200000000000000000000000000000000001100002000000000000001000000000010000000000000010000000000000000000000154234010000000011000000010000000020000000000000000300001100000112001701010101202300020000000000001000100000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20194.00940000000000000000000000000000000000100000001010001010000023100000000000000000000000000000000100211000040000000000000000000000000010000000000001000000110100000000000001000000000000100000000000000000000000000000000000002000000000000000000023000033000000020000000000000000000000000000221701100000003002001000000000000041230463000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................25191.009100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000410000000000000100000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000100200000100000000000010000200000000300000000000000001000000000002221021000230040710030100000000000319113310000000
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................20189.0089000000000000000000000000000000000000000000001000001000001000000000000000000000000000000000020030100000000000010000000000000001001000000000000000000100110000000000000210000010000000000000010000000000000000000000000010005121912000000000102100000001000000000000000000000090001231000021210000000002101200130000000000000301303000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................19186.0086000000000000000000000000000000010100111000000001000000004400000000000000000000000000000000000000000003000000000000000100000000000000000000000000021101000100000000000000000010011000000000000000010030000000002000000422000120001000000000000000000000000003000000000000000000001000000030420001000000301000011000000000001383312000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................25179.00790000000000000000000000000000000000000000001000000000100000000000000000000000000000000000010100100000060000000000100000000101000000000000000000000000000000000000000000003000000000000000000000000000000000100000000001000172212110000136000000000000000000000000000000000000010000010000013000020003100300200020000000000000220001000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................22169.00690000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000101000000020700000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000000100000514910020080000203400000000000000001200000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................24163.0063000000000000000000000040000000000000000001000000004000000000000000000000000000000000000000000010000000000000000000001000000000021000000000000000000001000000000000000110000020000000000000000000000100000010000000000000102220000000000003001000000000000001000000000000000100000010000022050101020100102000510000000000000140000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................23151.0051000000000000000000000000000000000000000000100000600000000000000000000000000000000000000000010020000101000000000000000001000000000000000000000000000000000000000000000100100100000000000000000000000010000010000000000000000001000000000000100000002101000001000000000000000000001000000012010810010000000000221000000000002100012000000
.............................................................................................................GC-TGCCATT-ATGGCCAACG-ATCCGG...............................................................................................................................25149.00490000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100010100000000020010000000000000000000000000000000000000000001000000000000000000000000000000000001003006542000000004300000000000000000000000000000000100001000000000000100000000000000000000000000000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................19142.0042000000000000000000000000000000000000000000000000000000002210000000000000000000000000000010001000410012000000000000000000000100000000000000000000000000000000000000000010000220100010000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010230100000000200000000000000000001420010000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................24139.00390000000000000000000000200000000000000000100001001000000000000000000000000000000030000000000100111000010000000000000010000000000000000000000000001000000000000000000002000000000000000000000000000000000000010000000000000010000100000000000000000000000000000000000000000000100000100000000000000000001003001000000000000000200010000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................26139.0039000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000005030502000010000000000000000000000000000000000000000000000000020010011000000001000012000000000000810001000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTATC......................................................................................................25138.003800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGT.............................................................................................................18137.0037000000000000000000000000000020000200000000000000000000000000000000000000000000000000000000000010001200000000000000000000001000200000000000000000010001100000000000000000000000020003000000000000000000000000000000000000100330100000000001000000000000000000000000000000000010000000000001200000020000100100000000000000001000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................21133.0033000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000110100030500010000100000000000000000000000000000001000010000000000000000000000100000000000000000000000000000000000010110210011000001200000000000000000010101000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................22133.0033000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000100026000000010000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000001000002000000000000000000000000000000000000020000302010000002100100000010000001000110000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTA......................................................................................................25129.0029000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000001010000000010000001000000000000002000000000000000000000000000000010000000001002100000000000000002560100000000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTG..........................................................................................................22127.0027000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000003000000000000000000000000000000000000000000000000000100000000000020000002000000000000000000000000000000002000000101000110000000000000000100000000000000000000000000000000000000000010230000000000100000010000000000000110000000000
droEre2
CCTACTTG-GTGATTCATTT-GTCCTTGCTGA---------------A-CA-------CGAGTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCATT-ATGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATCGGACGA--T---------TTTCAAGTCTGGTACC---G-CGA-TGCGTCTTAA-GGGGAGGTCATTTTCTGGTGAGTAT---SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................24121613.002161383469934630947475908976
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2318697.0086974741481876942536460553
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2214506.0045062493613354180422282
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2313470.0034701718661535138212350
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................2411310.001310485181349570427
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................2111208.001208622342253347220
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221897.00897741528602624580
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................251254.00254163829910818
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................251217.002173083694760
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211188.001882303187740
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................231175.00175602775850
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201118.00118101040760
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................241100.001001143351280
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................231100.001001256182210
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23191.00913121615540
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22171.00711621153250
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22152.0052614118220
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................24146.0046710218180
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................23144.004402004380
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20143.0043740011210
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................23139.003901116300
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24137.0037511118110
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24133.0033104113140
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................25126.002611009150
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................22124.00248002860
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................23120.002000033140
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................20116.00163020290
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................26114.00141010813
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................25112.00125210310
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................24111.00111000280
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................2219.0090500130
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2119.0095010030
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTA......................................................................................................2519.0091010430
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................1918.0081000160
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTTGA........................................................................................................2318.0083000140
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2317.0071000060
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2117.0072010220
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................2217.0071002130
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTT..........................................................................................................2116.0061000230
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2416.0061301010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2616.0060000330
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2516.0061000320
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTCT.......................................................................................................2415.0050000050
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTGA......................................................................................................2515.0050000140
.........................................................................................................................................TTGAGCAAAATTTCAGGTGA...........................................................................................................2015.0050000050
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................2115.0050000320
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGACT.....................................................................................................2614.0040000220
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTTT.....................................................................................................2614.0040000220
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1814.0040200020
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2414.0040000040
............................................................................................................................................AGCAAAATTTCAGGTGTGTGA.......................................................................................................2114.0042002000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTTG.........................................................................................................2214.0042000020
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2414.0040300100
...........................................................................................................................................GAGCAAAATTTCAGGTGTGT.........................................................................................................2013.0030000120
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2513.0030000120
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2313.0031000110
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1913.0031000110
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTA........................................................................................................2213.0030100110
droYak3
TCTACTTG-GTGATTCATTT-GTCCTGGTTGT---------------G-TC-------CAAGTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAATT-ATGGTCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATCGGAGGA--T---------TTGCAAAGTTGGTAAA---G-CAA-TGCGGCTTGG-GTGGAGATCCTTATCTGGTGAGTAT---SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2419353.0093531642925112419159384339810234
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2312672.002672102574664826913412540000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2211142.0011425935216581507670100
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2311031.00103110410906100010000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2311024.00102439130231321472470000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241396.00396132268452970005
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211296.00296641104135171090010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221198.001983393237818610000
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................221180.0018059411420010000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25193.009325221412470000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25180.008001223626310000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................21146.00461120145230000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................20138.0038020033300000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23136.0036041246190000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24125.002501770730000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................22121.0021211700010000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24120.0020051100040000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................25115.0015020001120000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................24115.001512801030000
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................19114.001470600010000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23114.001401113260000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................25113.0013011200000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24112.001231330200000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22111.001101600220000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................2218.00805110010000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................2017.00710600000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2615.00500000050000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2615.00501200020000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTTT.....................................................................................................2614.00400001030000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2314.00400200020000
..........................................................................................................................................TGAGCAAAATTTCAGGTG............................................................................................................1814.00430100000000
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2214.00402200000000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2113.00302001000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2513.00300010020000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2413.00300110010000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2512.00201000010000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTCT.......................................................................................................2412.00200000020000
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1812.00201100000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTA......................................................................................................2512.00200000110000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGAT........................................................................................................2312.00201000100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGA...........................................................................................................2012.00200000020000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................2312.00200000020000
......................................................................................TCGCGCCTGTATCTTGCTGAACCG..........................................................................................................................................................2412.00200200000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2412.00200000200000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2512.00201000010000
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................2012.00220000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2312.00210010000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1912.00200000020000
..............................................................................................................................................CAAAATTTCAGGTGTGTGA.......................................................................................................1912.00200200000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................2112.00200010010000
.............................................................................................................................................GCAAAATTTCAGGTGTGTGA.......................................................................................................2012.00201100000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................2212.00220000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGAA........................................................................................................2311.00100000010000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTC........................................................................................................2211.00100100000000
droEug1
T------G-GTGGATTATTT-GTCCTGACTAA---------------A-TT-------TAAGTCC-TT--TAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATA-TTGGCCCAAG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCGAAGGA--T---------TTCTA------------AA-AGGA-TAA-GTTTGT-AGAGTGATCTTTATCTGGTATGTAT---SizeHit CountTotal NormTotal
No Reads
droBia1
GTGATGTG-GTGACTCATGT-ATCCTTGGTGT---------------ATCCA------AAAATCC--T--AGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCACT-TTGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCTTTCATCGAGGGA--T---------GACGAAGT---------------------TCTTATAGGGGGAGTC-CT-ATTGGTAAGTGT---SizeHit CountTotal NormTotal
No Reads
droTak1
CTT----G-GTGATTCATTT-ATCCTGAGTGA---------------ACCTTACT---TAAA----TT--AAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCACT-TTGGCCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAACCATCGAGGGA--T---------TTAA----------------A--------TCATATAGGAGGAATCTTTATTCGGTAAGTGT---SizeHit CountTotal NormTotal
No Reads
droEle1
TCTAAATGTGTGATTCATCT-GGGCT---------------------------------AGCTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTTACCATA-TTGGCCTTCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCAAAAAAGTGTT-------CCC------------GAA-AAAA-TATGGTTT---AAGGAGATCTTTTTCTGGTGAGTATGACSizeHit CountTotal NormTotal
No Reads
droRho1
CTTGGTTG-GTGATTCATCT-GTGCTTAGTGG---------------A-CT-------ACAGTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATA-TTGGCCATCG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCACGAAAGTGTT-------CTG------------GAA-ACGA-TATGGT--AC-AAGGAGATCTTTTCCTGGTAAATAT---SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCAGTA-GTGATTCATACAGTTTTTGC---------------------CA------AAACTCC-TT--TGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCAATATTGGCCTACG-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCAACTGTAAAACCGAT-------TTG------------GCAG-AGA-TTTTACTT---ATGGAAATATTTTTCTGGTGAGTAA---SizeHit CountTotal NormTotal
No Reads
droKik1
GTGAGTTG-ATGATTCATAC-ATCCTTTGTGGAATT-----------A-TT-------ATAATCC-TT-CGGGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATT-TGGGCCTACA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTCAATGGG--T---------TTTTCTTTCGG--CGG---C-TACATAT-ACTTTG-GGAGAGATCAGCTTTTGGTGAGTAT---SizeHit CountTotal NormTotal
No Reads
droAna3
GTGA---------AGCATAG-ATTCTGGATTT---------------A-AG-------TGAATCC-TTTCAAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCGAT-ATGGCACAGA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTCAAAAGA--TAGTTTGGAATAC-------------------------------A-ATCGAGATCTTT-------GA--GT---SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2417304.00730470052040432123672992
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2313217.00321725610114712310941496
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2212325.002325236214186898980
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................231757.00757106594829126389
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241653.00653308527252331
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211584.005847513430170292
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221302.00302366141256178
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211129.00129150093471
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201124.0012441393968
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25162.00621611211814
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23158.005860061432
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................23158.005829270101
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22157.005739110412
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25142.004273231413
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23134.003431521013
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24128.00281030096
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20125.00255100415
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24122.0022603076
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24119.0019121492
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................25115.0015100176
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22113.0013100048
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................20111.0011800003
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................22110.0010070111
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2218.008610001
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2118.008600101
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1916.006100113
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................2216.006100005
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................2215.005201002
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTT..........................................................................................................2115.005000122
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................1915.005010004
.......................................................................................CGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2115.005500000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2414.004310000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................2314.004010021
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2313.003010020
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTA..........................................................................................................2113.003000012
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2513.003020001
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2413.003000003
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2113.003200001
.............................................................................................................................................GCAAAATTTCAGGTGTGTGA.......................................................................................................2013.003110100
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2412.002020000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGC...........................................................................................................2012.002010001
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2612.002010010
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1812.002110000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATTT....................................................................................................2712.002000020
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTTT.....................................................................................................2612.002000011
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2412.002000101
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................2211.001000100
......................................................................................TCGCGCCTGTATCTTGCTGAT.............................................................................................................................................................2111.001000001
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGGA......................................................................................................2511.001010000
............................................................................................................................................AGCAAAATTTCAGGTGTGT.........................................................................................................1911.001100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTCT.......................................................................................................2411.001000100
droBip1
TTTAAGTG-AAGAA------------------------------------------------TCC-TTTCAAGCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAAT-GTGGCACACA-ATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCATCAAATGA--TAGTTTGGAGTAC-------------------------------A-ATCGAG-----------------GT---SizeHit CountTotal NormTotal
No Reads
dp5
T------G-GAGATTT------TCC---TTGA---CATCCTAC--------------------CG-TG--TGCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCATA-ATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2419361.0093610127120019629985172413221528
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2213077.0030771926202811402351490110
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2312590.002590051125866536213993418
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2311714.00171403732641957193390220
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................2111130.00113022789414133104498061
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221352.0035201252064930121010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241287.002870671553022148000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211221.0022111105422079000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201181.00181031201011127000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................22188.0088025826011000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25183.008303420010116101
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................23179.0079014501710213
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23162.0062016242434000
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22161.006113173335134
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20150.0050026611412000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23146.0046121201021000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24142.0042017110437000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24124.002400251133000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................22123.002301820102000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24120.00200060806000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22119.00190360109000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25117.00170230318000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................24114.00140531410000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................23110.00100421102000
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................19110.00100640000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2419.0090310113000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2119.0090900000000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGT.........................................................................................................2018.0080600002000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2417.0070511000000
.......................................................................................CGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2117.0070700000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2517.0070150001000
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2217.0070160000000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2517.0070311200000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2517.0070021202000
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1916.0060201021000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTG........................................................................................................2416.0060200301000
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2115.0050400001000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2515.0050110003000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................2214.0040300100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2314.0040040000000
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................2014.0040200002000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2414.0040120001000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGC.........................................................................................................2113.0030021000000
......................................................................................TCGCGCCTGTATCTTGCTGAACCG..........................................................................................................................................................2413.0030100010010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2313.0030000021000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTT..........................................................................................................2112.0020200000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2612.0020100001000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................2612.0020110000000
.......................................................................................CGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2012.0020200000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2612.0020100001000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2312.0020000110000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTC........................................................................................................2212.0020010010000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................2212.0020100010000
.........................................................................................................................................TTGAGCAAAATTTCAGGT.............................................................................................................1812.0020100010000
......................................................................................TCGCGCCTGTATCTTGCTG...............................................................................................................................................................1912.0020100000010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTA..........................................................................................................2112.0020020000000
............................................................................................................................................AGCAAAATTTCAGGTGTGTGA.......................................................................................................2112.0020100100000
..............................................................................................................................................CAAAATTTCAGGTGTGTT........................................................................................................1811.0010100000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTA......................................................................................................2411.0010100000000
droPer2
CTTA-----GAGATTT------TCC---TTGA---CATCCTAC--------------------CG-TG--TGCTGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCATA-ATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2414037.004037181545663608082131
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2212186.002186811440221868935
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2311238.001238763193123220632
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................231842.0084283224121
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................231725.0072564013053202294
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211550.005504445068167217
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241289.002890392170186
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................221190.0019018510130
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221180.0018011426204673
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211115.00115081115243
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201113.00113060145835
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................22177.00777511000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25146.004632312017
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23142.00420325725
......................................................................................TCGCGCCTGTATCTTGCTGAACCG..........................................................................................................................................................24125.00252500000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24123.0023232565
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25117.0017120248
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................19113.0013800140
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20113.0013221035
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................21111.0011820100
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23110.0010011053
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22110.0010000145
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2419.009011016
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2419.009700011
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................2219.009000144
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2418.008101042
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2417.007000151
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................2215.005032000
.........................................................................................CGCCTGTATCTTGCTGAACC...........................................................................................................................................................2015.005500000
..........................................................................................GCCTGTATCTTGCTGAACC...........................................................................................................................................................1914.004400000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2314.004111010
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................2014.004300010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2413.003000003
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2513.003010002
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2413.003010020
.........................................................................................................................................TTGAGCAAAATTTCAGGT.............................................................................................................1813.003000210
..........................................................................................................................................TGAGCAAAATTTCAGGTG............................................................................................................1812.002200000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAGT.....................................................................................................2512.002100001
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTC.......................................................................................................2412.002001010
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2412.002100100
......................................................................................TCGCGCCTGTATCTTGCTGAAA............................................................................................................................................................2212.002010001
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2312.002001100
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................2312.002000011
......................................................................................TCGCGCCTGTATCTTGCTGAACCC..........................................................................................................................................................2412.002200000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2612.002200000
.......................................................................................CGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2112.002020000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGT.........................................................................................................2312.002000002
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................2212.002000011
.....................................................................................TTCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2411.001100000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTG........................................................................................................2411.001001000
......................................................................................TCGCGCCTGTATCTTGCTGAACCGT-........................................................................................................................................................2511.001100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2311.001000100
......................................................................................TCGCGCCTGTATCTTGCTGG..............................................................................................................................................................2011.001100000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTTGA........................................................................................................2331.003000003
.......................................................................................CGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2011.001010000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGG.........................................................................................................2111.001100000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAGA.....................................................................................................2511.001000010
.............................................................................................................................................GCAAAATTTCAGGTGTGT.........................................................................................................1811.001000010
droWil2
TGTCTGTG-T------------CCC---TGTG---TATCCTTCATGGTTCCAATCAAAATTAACA-TT-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAATTGTGATCATCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATCGTTGGA--A---------TACCC-------------------------CAAAC-GAAGTGATCAAA-TATTGTGAAAAT---SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................24231909.0063818396791525567474828
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2329495.00189906844393094618088
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2321784.503569774783046364
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2221136.00227234225575597841
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................222406.0081273829302436
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................242336.0067222296228324
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................232325.00650372802646
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................212314.00628203141103433
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................252143.00286018424420
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22268.501377851521
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22246.5093123789
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25246.50931466715
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................21241.0082024141628
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24235.5071721556
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24233.0066170553
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................20231.006204111631
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24230.00602001939
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................23225.00500132719
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23216.50330141216
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................22215.0030080184
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................23211.5023012515
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................19210.0020141032
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTTGA........................................................................................................2339.3328011242
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................2329.0018001116
.............................................................................................................GT-TACCAATTGTGATCATCATTTCCGG...............................................................................................................................2719.00900090
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2128.501703158
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2527.5015010113
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTG........................................................................................................2427.5015000141
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2526.5013000130
.........................................................................................................................................TTGAGCAAAATTTCAGGTGA...........................................................................................................2026.501300193
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTGA......................................................................................................2526.001200093
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................2226.0012120000
......................................................................................TCGCGCCTGTATCTTGCTGAACCG..........................................................................................................................................................2425.501121080
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................2025.501112026
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2125.501134112
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................2025.001070012
........................................................................................GCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2124.00841030
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................2123.50700061
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1823.50703031
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2423.50701051
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................2223.50750002
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2222.50531010
..........................................................................................................................................TGAGCAAAATTTCAGGTG............................................................................................................1822.50540001
......................................................................................TCGCGCCTGTATCTTGCTGAACCT..........................................................................................................................................................2422.00440000
............................................................................................................................................AGCAAAATTTCAGGTGTGTGA.......................................................................................................2122.00400040
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1921.50300003
...........................................................................................................................................GAGCAAAATTTCAGGTGTGT.........................................................................................................2021.50302100
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2521.50300030
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTA........................................................................................................2221.50301020
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2621.50300021
......................................................................................TCGCGCCTGTATCTTGCTG...............................................................................................................................................................1921.00211000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2521.00200020
.........................................................................................................................................TTGAGCAAAATTTCAGGT.............................................................................................................1821.00200020
...........................................................................................................................................GAGCAAAATTTCAGGTGTG..........................................................................................................1921.00201001
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2421.00200020
.............................................................................................................................................GCAAAATTTCAGGTGTGTGA.......................................................................................................2021.00201010
......................................................................................................................TTGTGATCATCATTTCCGG...............................................................................................................................1911.00100010
droVir3
AACAGGA-----GTTCATCT-T-TCT----GGTGC-------------------------TATCCCTT--GGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAATT-GAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................24110939.00109392627262761712150000803366170522267396532368991168362010440900041028000000000000100001252563524314701211100002010021
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2216139.00613943333054514600400003342281633783131994271475541211201210330500014330000000000000000001137659237902200000200000001
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2315191.005191613168170213420000004152077330721118062074384513220882209000072600000000000000101619749281159200000000000002300
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2311717.0017172457791300000000152693212757680621781202071560100020500000000000000000034397727400000000100000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211710.007102114930011100000023231541362212730323103115030000040000000000000010005296626800000001100000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221559.0055904358020000000054352033362024262000202513030000101000000000000000001572810000010001000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241472.004720011201100100003016634112202532000101000000000010000000000000000002313620800000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211341.0034112531010000000016111724249122290101013240100000100000000000000000004427000000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................231281.002814710324800000000002110000000000000000000000000000000000713200091010001034431114101056
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201106.00106005001000000003114410670000000000000000000000000000000000000136000000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22195.0095104226000000000011111302100000000000000000000000000001000000810100011000022103210
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25169.0069016600000000001130536044000000000000000010000000000000000001441000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23164.0064003500000000003114100190000000010100000000000000000000000001151800000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23149.004900010000010000230631035000001000000000010000000000000000000261400000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25148.004801220000000000622130013000000000000000000000000000000000000312100000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................22138.003856018000000000000000000000000000000000000000000000000000000004500000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24135.00351115000000000091121202200000010000000000000000000000000000030300000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................20131.003181610000000000000001000000000000000000000000000000000000000000000000010000001003
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................24125.00250013000000000042030200200000000000000000000000000000000000051200000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24122.00221431010000000000000000100000000000000000000000000000000000062200000000100000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................19118.001821000000000000000100000000000000000000000000000000000000000300000000001001000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22118.001800100000000000100201012000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................23117.00170013000000000000010000200000000000000000000000000000000000020800000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24117.00170001000000000020010000100000000000000000000000000000000000073200000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGG.........................................................................................................22116.00166310000000000000000000000000000000000000000000000000000000001500000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20115.00152135000000000010000002000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................22111.00110021000000000010000000000000000000000000000000000000000000031300000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................25110.00100020000000000011000200000000000000000000000000000000000000000400000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2118.0080400000000000000011000100000000000000000000000000000000000000100000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2317.0070200000000000000000000000000000000000000000000000000000000201200000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2417.0070010000000000010001000100000000000000000000000000000000000001200000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2317.0070003000000000000000000000000010000000000000000000000000000000300000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTT........................................................................................................2216.0060000000000000000000001000000000000000000000000000000000000021200000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGG..............................................................................................................................................................2016.0064200000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2116.0060050000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2315.0050100000000000010000000000000000000000000000000000000000000011100000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGT.............................................................................................................1814.0040000000000000010010001000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1814.0040030000000000000010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2513.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAG......................................................................................................2513.0030000000000000010000100000000000000000000000000000000000000010000000000000000000
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTG..........................................................................................................2213.0030020000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2213.0030111000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2412.0020000000000000001000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGC...........................................................................................................2012.0021000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................TCGCGCCTGTATCTTGCTGAAA............................................................................................................................................................2212.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CAAAATTTCAGGTGTGTGA.......................................................................................................1912.0020001000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTT..........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000200000000000000000
droMoj3
ATTT---G-G---------------------GAGC-------------------------TATCC-TT--AGCCGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAATT-GTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATCAAAG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2418070.008070469222114425429342048
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................2213515.003515615852774463181774
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................2311777.0017772072906677336801
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2311079.0010791292993151330239
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................211548.0054877252841173204
......................................................................................TCGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................231415.00415021023911
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................211217.002177941432781
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................241211.002111918111626121
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................221202.00202522311202868
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................201104.001041131214064
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGC.........................................................................................................221101.001010003953
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................22189.00893503771
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................25162.006213715288
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................25139.00395012247
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................24138.00382510273
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................23135.003580110115
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................20125.00253031162
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGG.......................................................................................................24121.0021142086
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................23121.00212103213
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................22118.0018420075
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGC.......................................................................................................24117.0017190070
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................23114.0014202154
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................18111.0011110090
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................22110.0010500041
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2418.008301031
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................1917.007101050
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................2317.007000034
...........................................................................................................................................GAGCAAAATTTCAGGTGTGT.........................................................................................................2017.007600010
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2416.006300102
......................................................................................TCGCGCCTGTATCTTGCTGA..............................................................................................................................................................2015.005001220
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGG.......................................................................................................2315.005010022
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAAT.....................................................................................................2514.004100030
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGC.........................................................................................................2114.004001030
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGTT......................................................................................................2514.004001003
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1913.003111000
......................................................................................TCGCGCCTGTATCTTGCTGAA.............................................................................................................................................................2113.003010110
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGATT.....................................................................................................2613.003001020
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTA..........................................................................................................2113.003000030
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTT..........................................................................................................2113.003000021
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGC.......................................................................................................2313.003000030
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAC......................................................................................................2513.003010020
.............................................................................................................GT-TACAATT-GTCACATCCAAATCCGG...............................................................................................................................2612.002000020
........................................................................................GCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2112.002010010
.............................................................................................................................................GCAAAATTTCAGGTGTGTGA.......................................................................................................2012.002000020
..........................................................................................................................................TGAGCAAAATTTCAGGTG............................................................................................................1812.002000011
.......................................................................................CGCGCCTGTATCTTGCTGAACC...........................................................................................................................................................2212.002000020
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................2512.002100010
...........................................................................................................................................GAGCAAAATTTCAGGTGTG..........................................................................................................1912.002200000
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTG........................................................................................................2112.002100001
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGCT......................................................................................................2511.001001000
............................................................................................................................................AGCAAAATTTCAGGTGTGT.........................................................................................................1911.001100000
droGri2
TCTCT----------C-----ACTCTCTGTGGTGT-------------------------TATCC-TT--GACCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCATT-GTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATC----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGA.......................................................................................................241605.00605135470
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGT.........................................................................................................221329.0032999230
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTG........................................................................................................231190.0019046144
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGA.......................................................................................................23166.00662442
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTG..........................................................................................................21160.00601545
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGT.........................................................................................................21122.0022157
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTG........................................................................................................22116.0016106
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAA......................................................................................................2517.00743
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2517.00743
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTGT.......................................................................................................2415.00514
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAA......................................................................................................2414.00422
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGA.........................................................................................................2213.00303
.........................................................................................................................................TTGAGCAAAATTTCAGGTGT...........................................................................................................2013.00303
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTT........................................................................................................2312.00202
...........................................................................................................................................GAGCAAAATTTCAGGTGTGTGA.......................................................................................................2212.00220
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGT.......................................................................................................2312.00202
...............................................................................................................................................AAAATTTCAGGTGTGTGA.......................................................................................................1812.00220
...........................................................................................................................................GAGCAAAATTTCAGGTGTGT.........................................................................................................2012.00220
......................................................................................TCGCGCCTGTATCTTGCTGAAC............................................................................................................................................................2212.00211
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTA........................................................................................................2312.00202
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTC........................................................................................................2311.00101
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTGAT......................................................................................................2411.00101
..........................................................................................................................................TGAGCAAAATTTCAGGTGTG..........................................................................................................2011.00110
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGA.........................................................................................................2111.00101
.........................................................................................................................................TTGAGCAAAATTTCAGGTG............................................................................................................1911.00101
..........................................................................................................................................TGAGCAAAATTTCAGGTGT...........................................................................................................1911.00110
........................................................................................................................................GTTGAGCAAAATTTCAGGTGTGT.........................................................................................................2311.00110
..........................................................................................................................................TGAGCAAAATTTCAGGTGTGTATT......................................................................................................2411.00110
.........................................................................................................................................TTGAGCAAAATTTCAGGTGTGTTT.......................................................................................................2411.00110

Generated: 10/20/2015 at 06:53 PM