ID:

dse-mir-6-3

 Coordinate:

scaffold_1:13062954-13063033 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.1 -32.8 -32.5

Flybase annnotation

pre_miRNA [Dsec\mir-6-3-RM]; utr3 [utr3_minus_3613]; miRNA [Dsec\miR-6-3-RA]

No Repeatable elements found

mature

  1. dse-mir-6-3  scaffold_1:13062960-13062981 -
  2. dse-mir-6-2  scaffold_1:13063112-13063133 -
  3. dse-mir-6-1  scaffold_1:13063249-13063270 -
star

Sense Strand Reads

CATTTGTGGCACGCATTTGTGTCACCTCAGTGCGAAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCTCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGACATGAAACAGAAATATTT

*******************************************.(((((.((((.((((((((((((((((((.((((((((.................)))))))))))))))))))))))))).)))))))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 M054

female body

 V115

head

 V113

male body
......................................................................................................TATCACAGTGGCTGTTCTTTTT........................................................ 22 0 3 27140.33 81421 78922 1713 772 14
......................................................................................................TATCACAGTGGCTGTTCTTTT......................................................... 21 0 3 8065.33 24196 23821 227 138 10
......................................................................................................TATCACAGTGGCTGTTCTTT.......................................................... 20 0 3 1417.00 4251 4190 23 35 3
......................................................................................................TATCACAGTGGCTGTTCTTTTTT....................................................... 23 0 1 502.00 502 494 6 1 1
......................................................................................................TATCACAGTGGCTGGTCTTTTT........................................................ 22 1 3 375.67 1127 1120 4 3 0
..........................................................AGGGAACGGTTGCTGATGATGTA................................................................................................... 23 0 1 262.00 262 242 14 4 2
......................................................................................................TATCACAGTGGCTGTTCTT........................................................... 19 0 3 259.67 779 757 3 19 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTA....................................................... 23 1 3 126.33 379 368 2 9 0
..........................................................................................................ACAGTGGCTGTTCTTTTT........................................................ 18 0 3 112.00 336 334 0 2 0
......................................................................................................TATCACAGTGGCTGTTCCTTTT........................................................ 22 1 3 104.67 314 307 3 4 0
........................................................................................................TATCAGTGGCTGTTCTTTTT........................................................ 20 2 3 101.00 303 302 0 1 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTT........................................................ 21 0 3 92.00 276 128 147 1 0
......................................................................................................TATCACAGTGGCTGTTCTCTTT........................................................ 22 1 3 80.00 240 236 0 3 1
......................................................................................................TATCACAGTGGCTGTTTTTTTT........................................................ 22 1 3 76.33 229 222 1 6 0
......................................................................................................TATTACAGTGGCTGTTCTTTTT........................................................ 22 1 3 69.67 209 208 1 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTT........................................................ 22 1 3 67.67 203 198 2 3 0
......................................................................................................TATCACAGTGGCTGTTCT............................................................ 18 0 3 67.33 202 196 1 5 0
......................................................................................................TATCACAGTGGCTGGTCTTTT......................................................... 21 1 3 59.00 177 174 0 3 0
......................................................................................................TATCACAGTGGTTGTTCTTTTT........................................................ 22 1 3 51.00 153 149 4 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTTT........................................................ 22 1 3 48.33 145 143 0 2 0
......................................................................................................TATCACAGTGGCTGTCCTTTTT........................................................ 22 1 3 43.00 129 125 3 1 0
......................................................................................................TATCACGGTGGCTGTTCTTTTT........................................................ 22 1 3 41.00 123 120 0 3 0
......................................................................................................TATCACAGTGGCCGTTCTTTTT........................................................ 22 1 3 40.67 122 120 0 2 0
......................................................................................................TATCACAGCGGCTGTTCTTTTT........................................................ 22 1 3 37.67 113 105 8 0 0
..........................................................AGGGAACGGTTGCTGATGATGT.................................................................................................... 22 0 1 35.00 35 35 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTT........................................................ 22 1 3 34.67 104 95 7 2 0
......................................................................................................TATCACAGTTGCTGTTCTTTTT........................................................ 22 1 3 32.33 97 91 5 1 0
......................................................................................................TATCACAGTGGCTGTTCTTTTA........................................................ 22 1 3 32.33 97 94 2 1 0
......................................................................................................TATCATAGTGGCTGTTCTTTTT........................................................ 22 1 3 32.00 96 94 2 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTT........................................................ 22 1 3 30.33 91 79 12 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 30.00 90 85 5 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTTT........................................................ 22 1 3 29.67 89 85 4 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 29.33 88 86 0 2 0
......................................................................................................TATCACAGTGGCTGTTCTTTTC........................................................ 22 1 3 29.00 87 85 1 1 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 28.33 85 84 1 0 0
......................................................................................................TATCACAGTGGCTGATCTTTTT........................................................ 22 1 3 24.67 74 74 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 24.67 74 70 4 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTT......................................................... 21 1 3 24.33 73 73 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTT......................................................... 21 1 3 24.00 72 71 1 0 0
......................................................................................................TATCACTGTGGCTGTTCTTTTT........................................................ 22 1 3 23.33 70 69 1 0 0
......................................................................................................TATCACACTGGCTGTTCTTTTT........................................................ 22 1 3 23.33 70 65 5 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTTT........................................................ 22 1 3 22.00 66 61 3 2 0
......................................................................................................TATCACAGTGGCTGTTTTTTT......................................................... 21 1 3 21.67 65 64 0 1 0
......................................................................................................TATCACAGTGTCTGTTCTTTTT........................................................ 22 1 3 21.33 64 61 0 3 0
......................................................................................................TATCACAGTGGTTGTTCTTTT......................................................... 21 1 3 21.00 63 63 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTT........................................................ 20 0 3 19.67 59 48 10 1 0
......................................................................................................TATCACAGTGGCTGCTCTTTT......................................................... 21 1 3 19.33 58 58 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTTT........................................................ 22 1 3 19.33 58 57 0 1 0
......................................................................................................TATCACGGTGGCTGTTCTTTT......................................................... 21 1 3 19.00 57 57 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTT........................................................ 22 1 3 18.67 56 56 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTTT........................................................ 22 1 3 18.00 54 54 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTTT........................................................ 22 1 3 17.33 52 51 1 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTTT........................................................ 22 1 3 17.00 51 48 2 1 0
......................................................................................................TATCATAGTGGCTGTTCTTTT......................................................... 21 1 3 17.00 51 51 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 16.67 50 47 3 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTTT........................................................ 22 1 3 16.33 49 45 3 1 0
......................................................................................................TATCGCAGTGGCTGTTCTTTT......................................................... 21 1 3 15.33 46 46 0 0 0
..........................................................AGGGAACGGTTGCTGATGATG..................................................................................................... 21 0 1 15.00 15 15 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTCT........................................................ 22 1 3 14.33 43 43 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................................................... 24 2 3 14.00 42 41 0 1 0
......................................................................................................TATCACAATGGCTGTTCTTTTT........................................................ 22 1 3 12.67 38 38 0 0 0
......................................................................................................TATCACAGTGGCAGTTCTTTTT........................................................ 22 1 3 12.33 37 37 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTT......................................................... 21 1 3 11.33 34 33 0 1 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 11.33 34 34 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTTT........................................................ 22 1 3 11.33 34 34 0 0 0
......................................................................................................TATCACCGTGGCTGTTCTTTTT........................................................ 22 1 3 11.33 34 26 7 1 0
.......................................................................................................ATCACAGTGGCTGTTCTTTT......................................................... 20 0 3 11.33 34 11 23 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTGT....................................................... 23 1 1 11.00 11 11 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTC....................................................... 23 1 3 11.00 33 32 1 0 0
........................................................................................................TATCAGTGGCTGTTCTTTT......................................................... 19 2 8 10.88 87 85 0 2 0
......................................................................................................TATCACAGTGGCTGTCCTTTT......................................................... 21 1 3 10.67 32 31 0 1 0
......................................................................................................TATCACAGTGGCTTTTCTTTT......................................................... 21 1 3 10.33 31 31 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTT......................................................... 21 1 3 10.33 31 30 1 0 0
..........................................................................................................ACAGTGGCTGGTCTTTTT........................................................ 18 1 3 10.00 30 30 0 0 0
......................................................................................................TATCACAGTGGCTGTACTTTTT........................................................ 22 1 3 9.67 29 29 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTT......................................................... 21 1 3 9.00 27 27 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 8.67 26 26 0 0 0
.......................................................................................................TTCACAGTGGCTGTTCTTTTT........................................................ 21 1 3 8.33 25 25 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTT......................................................... 21 1 3 8.33 25 24 1 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 8.33 25 25 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTT......................................................... 21 1 3 8.00 24 22 2 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTT......................................................... 21 1 3 8.00 24 24 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTT....................................................... 23 1 1 8.00 8 8 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTT......................................................... 22 1 3 7.67 23 23 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTTT......................................................... 21 1 3 7.67 23 23 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCT......................................................... 21 1 3 7.67 23 23 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTT......................................................... 21 1 3 7.67 23 23 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTG........................................................ 22 1 3 7.33 22 20 2 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 7.33 22 22 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTT......................................................... 21 1 3 7.33 22 22 0 0 0
......................................................................................................TCTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 7.33 22 22 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTT...................................................... 24 1 2 7.00 14 14 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTTTT....................................................... 23 1 1 7.00 7 7 0 0 0
......................................................................................................TATCACAGTGGCTGATCTTTT......................................................... 21 1 3 7.00 21 21 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTTT........................................................ 22 1 3 7.00 21 21 0 0 0
......................................................................................................TATCACAGTGGCTGTTATTTTT........................................................ 22 1 3 7.00 21 20 0 1 0
......................................................................................................TATCACAGTGGCTGTTCCTTTTT....................................................... 23 1 1 7.00 7 7 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTTT.......................................................... 20 1 3 6.33 19 19 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTT......................................................... 21 1 3 6.33 19 17 2 0 0
.........................................................................................................CACAGTGGCTGTTCTTTTT........................................................ 19 0 3 6.33 19 17 2 0 0
......................................................................................................TAACACAGTGGCTGTTCTTTTT........................................................ 22 1 3 6.33 19 18 1 0 0
......................................................................................................TATCACAGTGTCTGTTCTTTT......................................................... 21 1 3 6.00 18 18 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTT........................................................ 22 2 3 6.00 18 18 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTT......................................................... 21 1 3 5.67 17 16 1 0 0
........................................................................................................TCACAGTGGCTGTTCTTTT......................................................... 19 0 3 5.33 16 14 2 0 0
......................................................................................................TATCACAGTGGCTGGTCTTT.......................................................... 20 1 3 5.33 16 16 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTT........................................................... 19 1 4 5.00 20 20 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTTT........................................................ 22 1 3 5.00 15 13 0 2 0
......................................................................................................TATAACAGTGGCTGTTCTTTTT........................................................ 22 1 3 5.00 15 6 9 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTTT........................................................ 22 1 3 5.00 15 14 1 0 0
......................................................................................................TATCACAATGGCTGTTCTTTT......................................................... 21 1 3 5.00 15 15 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTT.......................................................... 20 1 3 4.67 14 14 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTT......................................................... 21 1 3 4.67 14 14 0 0 0
......................................................................................................TATCCCAGTGGCTGTTCTTTTT........................................................ 22 1 3 4.67 14 14 0 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTTT........................................................ 22 1 3 4.67 14 11 3 0 0
......................................................................................................TATCACTGTGGCTGTTCTTTT......................................................... 21 1 3 4.67 14 13 0 1 0
......................................................................................................TATCACAGTGGCTGTTCTTTA......................................................... 21 1 3 4.33 13 13 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTG...................................................... 24 0 1 4.00 4 4 0 0 0
.........................................................AAGGGAACGGTTGCTGATGATGTA................................................................................................... 24 0 1 4.00 4 4 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTTT....................................................... 23 1 1 4.00 4 4 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTTT....................................................... 22 0 1 4.00 4 3 1 0 0
..........................................................AGGGAACGGTTGCTGATGAT...................................................................................................... 20 0 1 4.00 4 3 0 0 1
..........................................................AGGGAACGGTTGCTGATGATGTAA.................................................................................................. 24 1 1 4.00 4 4 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 4.00 12 10 2 0 0
......................................................................................................TATCACAGTGGGTGTTCTTTTT........................................................ 22 1 3 4.00 12 12 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTT.......................................................... 20 1 3 4.00 12 12 0 0 0
......................................................................................................TATCACAGTGGCAGTTCTTTT......................................................... 21 1 3 3.67 11 11 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTC......................................................... 21 1 3 3.67 11 11 0 0 0
......................................................................................................TATCACAGTGGTTGTTCTTT.......................................................... 20 1 3 3.67 11 11 0 0 0
......................................................................................................TCTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 3.67 11 11 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTT......................................................... 21 1 3 3.67 11 11 0 0 0
......................................................................................................TATCATAGTGGCTGGTCTTTTT........................................................ 22 2 3 3.33 10 10 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTT......................................................... 21 1 3 3.33 10 10 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTAA....................................................... 23 2 3 3.33 10 10 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTT......................................................... 21 1 3 3.33 10 10 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0
......................................................................................................TATCACCGTGGCTGTTCTTTT......................................................... 21 1 3 3.00 9 6 3 0 0
......................................................................................................TATCACAGTGGCTGGTCT............................................................ 18 1 4 3.00 12 12 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTCT....................................................... 23 1 1 3.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0
......................................................................................................TATCAAAGTGGCTGTTCTTTTT........................................................ 22 1 3 3.00 9 9 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGTAG.................................................................................................. 24 0 1 3.00 3 3 0 0 0
......................................................................................................TATCCCAGTGGCTGTTCTTTT......................................................... 21 1 3 3.00 9 9 0 0 0
......................................................................................................TATCACAGTGGCTGTCTTTTT......................................................... 21 2 3 2.67 8 8 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTT......................................................... 21 1 3 2.67 8 8 0 0 0
......................................................................................................TATGACAGTGGCTGTTCTTTTT........................................................ 22 1 3 2.67 8 7 1 0 0
......................................................................................................TATCACAGTGGCTGTACTTTT......................................................... 21 1 3 2.67 8 8 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTT.......................................................... 20 1 3 2.33 7 7 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTT.......................................................... 20 1 3 2.33 7 7 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTT.......................................................... 19 0 3 2.33 7 2 5 0 0
.........................................................................................................CACAGTGGCTGTTCTTTT......................................................... 18 0 3 2.33 7 6 1 0 0
..........................................................AGGGAACGGTTGCTGGTGATGTA................................................................................................... 23 1 1 2.00 2 2 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0
..........................................................AGGTAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 2.00 2 2 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 2.00 6 6 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTT.......................................................... 20 1 3 2.00 6 6 0 0 0
......................................................................................................TATCACAGTGGCGGTTCTTTTTT....................................................... 23 1 1 2.00 2 1 0 1 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTA...................................................... 24 1 1 2.00 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTG......................................................... 21 1 3 2.00 6 4 2 0 0
......................................................................................................TATCACAGTGGCTGTTATTTT......................................................... 21 1 3 2.00 6 6 0 0 0
......................................................................................................TATCACAGTGGCTGGTTCTTTTT....................................................... 23 3 2 2.00 4 4 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTT.......................................................... 20 1 3 2.00 6 6 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 2.00 2 2 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTT.......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTT.......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TATATCAGTGGCTGTTCTTTTT........................................................ 22 2 3 1.67 5 5 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 1.67 5 5 0 0 0
.......................................................................................................TTCACAGTGGCTGTTCTTTT......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTCT.......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTT.......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTGT........................................................ 22 1 3 1.67 5 1 4 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTT.......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTT.......................................................... 20 1 3 1.67 5 5 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTT.......................................................... 20 1 3 1.67 5 5 0 0 0
........................................................................................................TATCAGTGGCTGTTCTTT.......................................................... 18 2 13 1.62 21 20 0 1 0
......................................................................................................TATCACAGTGGCTGTGCTTTT......................................................... 21 1 3 1.33 4 4 0 0 0
........................................................................................................TTACAGTGGCTGTTCTTTTT........................................................ 20 1 3 1.33 4 4 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTT.......................................................... 20 1 3 1.33 4 4 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTT.......................................................... 20 1 3 1.33 4 4 0 0 0
......................................................................................................TATCACAGTGGCTGGTCCTTTT........................................................ 22 2 3 1.33 4 4 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 1.33 4 4 0 0 0
......................................................................................................TATCACAGTGGCTGGACTTTTT........................................................ 22 2 3 1.33 4 4 0 0 0
....................................................................................................TCTATCACAGTGGCTGTTCTTTT......................................................... 23 1 3 1.33 4 4 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTT.......................................................... 21 1 3 1.33 4 4 0 0 0
......................................................................................................TATCACAGTGGCTGGCCTTTTT........................................................ 22 2 3 1.33 4 4 0 0 0
......................................................................................................TATAACAGTGGCTGTTCTTTT......................................................... 21 1 3 1.33 4 3 1 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTT......................................................... 21 1 3 1.33 4 4 0 0 0
......................................................................................................TATCACAGTGGGTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0
..........................................................AGGGAACGGTTGCTGACGATGT.................................................................................................... 22 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0
.....................................................................................................TTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 1.00 3 1 2 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTC...................................................... 24 1 1 1.00 1 1 0 0 0
......................................................................................................TACCACAGTGGCTGGTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTGTTATTT.......................................................... 20 1 3 1.00 3 3 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGTTGTTCT............................................................ 18 1 3 1.00 3 3 0 0 0
..........................................................AGGGAACGTTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
..........................................................AGGGAACGGTTGCTGATTATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
..........................................................AGCGAACGGTTGCTGATGATGT.................................................................................................... 22 1 1 1.00 1 1 0 0 0
..........................................................AGGGAATGGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
..........................................................AAGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTGTA...................................................... 24 2 1 1.00 1 1 0 0 0
..........................................................ATGGAACGGTTACTGATGATGTA................................................................................................... 23 2 1 1.00 1 0 1 0 0
..........................................................AGGGAACGGTTCCTGATGATG..................................................................................................... 21 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................CATCACAGTGGCTGTCCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTAA...................................................... 24 3 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTGT..................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................AGGGAACTGTTGCTGATGATG..................................................................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................AGGGAACGGTTGTTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
...........................................................AGGAACGGTTGCTGATGATGTA................................................................................................... 22 1 1 1.00 1 1 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTTTGT....................................................... 23 2 1 1.00 1 1 0 0 0
..........................................................AGGGAACGCTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATAACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 0 1 0 0
..........................................................AGGGCACGGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
.........................................................AAGGGAACGGTTGCTGATGATG..................................................................................................... 22 0 1 1.00 1 1 0 0 0
...................................................................................................TTATATCACAGTGGCTGTTCT............................................................ 21 0 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTTCTTTTT....................................................... 23 2 2 1.00 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTCTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0
..........................................................................................................ACAGTGGCTGTCCTTTTTT....................................................... 19 1 1 1.00 1 1 0 0 0
..........................................................AGGGAACGGTTGCTGATGTTGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTTTG...................................................... 22 0 1 1.00 1 1 0 0 0
.......................................................AGAAGGGAACGGTTCCTGATG........................................................................................................ 21 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTA.......................................................... 20 1 3 1.00 3 3 0 0 0
..........................................................AGGGAACGGTTGCTGATGATTTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TAGCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 1.00 3 2 1 0 0
......................................................................................................TATCCCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
..........................................................AGGGATCGGTTGCTGATGATGT.................................................................................................... 22 1 1 1.00 1 1 0 0 0
.......................................................................................................ATCCCAGTGGCTGTTCTTTTT........................................................ 21 1 3 1.00 3 0 3 0 0
..........................................................AGGGAACGGTTGCTGATGACGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTTTA...................................................... 24 2 1 1.00 1 1 0 0 0
......................................................................................................TATTACAGTGGCTGGTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0
........................................................................................................TATCAGTGGCTGTTCTTTTTT....................................................... 21 2 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCGGTTCTTTT......................................................... 21 1 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTTT............................................................ 18 1 4 1.00 4 4 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGTCTGTTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0
......................................................................................................TAACACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
..........................................................AGGGAACGGTTCCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCATTTT........................................................ 22 1 3 1.00 3 2 1 0 0
..........................................................GGGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTTGCTTTTCTTTT......................................................... 21 2 3 1.00 3 0 3 0 0
..........................................................AGGGAACGGTTGCTGATGGTGTAGT................................................................................................. 25 1 1 1.00 1 0 0 0 1
.....................................................................................................GTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 1.00 3 0 3 0 0
......................................................................................................TATCACAGTGGCTGTCTTTT.......................................................... 20 2 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTC.......................................................... 20 1 3 1.00 3 2 0 1 0
..........................................................AGGGAACGGTTGCTGATGGTGTA................................................................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0
......................................................................................................TATCACCGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 0 1 0 0
..........................................................AGGGAACTGTTGCTGATGATGTA................................................................................................... 23 1 1 1.00 1 0 0 1 0
......................................................................................................TATCCCAGTGGCTGCTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGATCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
.....................................................................................................ATATCACAGTGGCTGTTCTTTT......................................................... 22 0 3 1.00 3 3 0 0 0
.......................................................................................................TACACAGTGGCTGTTCTTTTT........................................................ 21 2 3 1.00 3 3 0 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGTAT.................................................................................................. 24 1 1 1.00 1 1 0 0 0
......................................................................................................TATCCCAGTGGCTGTTCTTT.......................................................... 20 1 3 1.00 3 3 0 0 0
..........................................................................................................ACAGTGGCTGTTCCTTTT........................................................ 18 1 3 1.00 3 3 0 0 0
..........................................................AGGGAACGGTCGCTGATGATGT.................................................................................................... 22 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTATA...................................................... 24 2 1 1.00 1 1 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTT........................................................... 19 1 3 1.00 3 3 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTAT..................................................... 25 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTT........................................................... 19 1 3 1.00 3 3 0 0 0
.........................................................AAGGGAACGGTTGCCGATGATGTA................................................................................................... 24 1 1 1.00 1 1 0 0 0
...............................................................ACGGTTGCTGATGATGTATTTT............................................................................................... 22 2 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGTTGTTCTTTTTT....................................................... 23 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACCGTGGCTGTTTTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTTA....................................................... 22 1 3 1.00 3 3 0 0 0
...........................................................AGTAACGGTTGCTGATGATGTA................................................................................................... 22 2 1 1.00 1 1 0 0 0
......................................................................................................CTTCACAGTGGCTGTTCTTTTT........................................................ 22 2 3 1.00 3 3 0 0 0
............................................................AGAACGGTTGCTGATGATGTA................................................................................................... 21 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTTTG...................................................... 24 1 1 1.00 1 1 0 0 0
......................................................................................................TATCACAGTGGCTTTTCT............................................................ 18 1 4 0.75 3 2 0 1 0
.......................................................................................................ATCACACTGGCTGTTCTTTTT........................................................ 21 1 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTAAA...................................................... 24 3 3 0.67 2 2 0 0 0
......................................................................................................TAACACAGTGGCTGTTCTTTT......................................................... 21 1 3 0.67 2 2 0 0 0
......................................................................................................TATCATAGTGGCTGGTCTTTT......................................................... 21 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGGTGTTCTTT.......................................................... 20 1 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGGTATTTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTCTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGCCCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0
..................................................................................................GATCTATCACAGTGGCTGTTCTTTTT........................................................ 26 3 3 0.67 2 2 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTCTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTT.......................................................... 20 1 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCCTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGGGGCTGGTCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TCTCACAGTGGCTGGTCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGAGGCTGGTCTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTGTT........................................................ 22 1 3 0.67 2 0 2 0 0
......................................................................................................TATCACAGTGGTTGTTCTTTTTA....................................................... 23 2 3 0.67 2 2 0 0 0
.......................................................................................................TCCACAGTGGCTGTTCTTTTT........................................................ 21 2 3 0.67 2 2 0 0 0
......................................................................................................TATCACAGCGGCTGTTTTTTTT........................................................ 22 2 3 0.67 2 2 0 0 0

Anti-sense strand reads

GTAAACACCGTGCGTAAACACAGTGGAGTCACGCTTTTAACTTTTAACATGTTTTTCTTCCCTTGCCAACGACTACTACATCAAGCTTTGAGAGTGTTAAATATAGTGTCACCGACAAGAAAAAACAAACCGTTAGCTAGATGCAAGTCACCAAACGGTCCTGTACTTTGTCTTTATAAA

*****************************************.(((((.((((.((((((((((((((((((.((((((((.................)))))))))))))))))))))))))).)))))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total M054

female body
........................................................................................................................................CTAGATGCAATTCGCGAA.......................... 18 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1:13062904-13063083 - dse-mir-6-3 Known_mirbase CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAGAA-----ATATTT
droSim2 2r:16195443-16195622 - dsi-mir-6-3 Known_mirbase CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAGAA-----ATATTT
dm3 chr2R:15548171-15548350 - dme-mir-6-3 Known_mirbase CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAGAA-----ATATTT
droEre2 scaffold_4845:9748425-9748604 - der-mir-6-3 Known_mirbase CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTTG-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTAC----------------ATGAAATAGAA-----ATATTT
droYak3 2R:13624439-13624618 + dya-mir-6-3 Known_mirbase CATTTGTGG-------CCC-GCA--------TTTTTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCTCAA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGAC----------------ATGAAATAGAA-----ATGCTT
droEug1 scf7180000409474:2397499-2397672 + CATCTGTGG-------CAT-GCA--------TTTGTG---TCACCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAA-ATTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCAGGAC----------------ATGAAATTGAA-----------
droBia1 scf7180000302143:3059089-3059269 - CATCTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAA-ACTCTCACAG-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAGTGGTTTTCCAGGAC----------------ATGAAATGGAAA----ACATTC
droTak1 scf7180000415384:84701-84888 + CATCTGTGG-------CAT-GCA--------TTTGTG---TCAACTGA-ATG--TGAAAACT--------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCAGGAC----------------ATGAAATAGAAA----TTATTC
droEle1 scf7180000491201:2013245-2013428 - CATACAGGG-------AAC-GGA--------TTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGAGGTTTTAAAATAA-------ATAGCGCACATAAAACAGAA-----A-----
droRho1 scf7180000780066:74321-74501 + CATCCAGGA-------AAC-GCA--------TTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAGTGGTTTTTCAGGAC----------------ACGAAATTGAAA----ATATTC
droFic1 scf7180000454039:847310-847490 - CATCTGCGG-------CAC-GCA--------TTCGTG---TCTCCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAGTGGTTTTCCAGGAC----------------ACGAAATAGAAA----ATATCC
droKik1 scf7180000302679:88613-88796 - CATCAGCGC-------GGCCTCA---------GTGTA---TCATCTCT-GTT--GG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAA-ATTCACACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTACCCAGGAC----------------ACGAAATTGAAAAT--ATATAT
droAna3 scaffold_13266:9732070-9732214 + dan-mir-6-3 Known_mirbase CATTTGTGG-------CAC-GCA--------TTTGTG---TCACGTTG-GTGGACA---------------------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT------ATTCGCATCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC------------------------------------------------------
droBip1 scf7180000396427:875015-875190 + CATCTGTGG-------CAC-GAA--------TTTGTGGCATCACCTTG-GTGG-AC---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT------ATTCGCCTCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATTCTGAAAGGAT----------------A----ATATAG-----ATACCT
dp5 3:12676787-12676922 - dps-mir-6-3 Known_mirbase CATCTCCGC----CGCCGC-GCA--------TTCGC-----------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTTGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGATC------------------------------------------------------
droPer2 scaffold_2:8906750-8906920 + dpe-mir-6-2 Known_mirbase CATCTCCGC----CGCCGC-GCA--------TT--------CACC---------------------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTCGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CAGGACTTCAGTT---------TCGAAATATAAAAAAAAAGTGT
droWil2 scf2_1100000004514:1650985-1651124 - dwi-mir-6-3 Known_mirbase TATTTTTAGATTTCTCTGTTTTA----CCGTTTTCTT---TCATTT-----------------------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC----------------------------------------------------------
droVir3 scaffold_12875:4112887-4113048 + dvi-mir-6-3 Known_mirbase CAGCCGAAA-------G-T-ACT--TT-----TATTA---TTAACTAACTTG--TGCAATTTGTTCACTTT--AATGACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GAC-CTTTGTACTC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC----------------------------------------------------------
droMoj3 scaffold_6496:20935939-20936112 - dmo-mir-6-3 Known_mirbase C---TGTGA-------AAT-AAATCTTGA--ATAGTG---TTATCTTAAGTA--TGTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AAT-TCATTTAATC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAG----------------------------------------------------
droGri2 scaffold_5621:3503-3639 + dgr-mir-6-5 Known_mirbase CAACCGCTG-------CAT-AAA--------TTCAC-----CA------ATG--C--------------------------------TATGTTTAACC-ACAGGGAACTGCTGCTGCTGATATACAAC-CAT-ATTTATACACGACTATATCACAGTGGCTGTTCTTTTTGGTTGC---ATCG--CCATTTGCAACGATTTGTCAG-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAGAA-----ATATTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22327140.338142117131478922772
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2138065.33241962271023821138
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031417.004251233419035
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................231502.00502614941
.....................................................................................................AGGGAACGGTTGCTGATGATGTA...........................................................................................................................231262.002621422424
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193259.677793075719
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233126.33379203689
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................183112.00336003342
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21392.0027614701281
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18367.33202101965
.....................................................................................................AGGGAACGGTTGCTGATGATGT............................................................................................................................22135.003500350
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22332.339720941
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22329.008710851
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20319.6759100481
.....................................................................................................AGGGAACGGTTGCTGATGATG.............................................................................................................................21115.001500150
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24314.004200411
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20311.3334230110
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23311.003310320
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2237.332220200
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................2427.001400140
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1936.331920170
......................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1935.331620140
....................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2134.331300130
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2414.0040040
....................................................................................................AAGGGAACGGTTGCTGATGATGTA...........................................................................................................................2414.0040040
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2214.0041030
.....................................................................................................AGGGAACGGTTGCTGATGAT..............................................................................................................................2014.0040130
.....................................................................................................AGGGAACGGTTGCTGATGATGTAA..........................................................................................................................2414.0040040
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2133.671100110
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2333.331000100
.....................................................................................................AGGGAACGGTTGCTGATGATGTAG..........................................................................................................................2413.0030030
.....................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.3375020
.......................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1832.3371060
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................2412.0020020
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2132.0062040
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2411.0010010
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT..........................................................................2511.0010010
....................................................................................................AAGGGAACGGTTGCTGATGATG.............................................................................................................................2211.0010010
.................................................................................................................................................TTATATCACAGTGGCTGTTCT.................................................................................2111.0010010
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG...........................................................................2211.0010010
....................................................................................................................................................TATCACAGTGGCTGTTCTTA...............................................................................2031.0030030
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2031.0030021
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.0030030
.....................................................................................................AGGGAACGGTTGCTGATGATGTAT..........................................................................................................................2411.0010010
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2231.0030030
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2430.6720020
droSim2
CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAGAA-----ATATTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223816.00244800797972722282537553601315000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................213162.6748810811199451247312154104000
.....................................................................................................AGGGAACGGTTGCTGATGATGTA...........................................................................................................................231137.00137001710092131307624000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................23196.0096007680244100001000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19361.3318400212713562641000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................20350.671520033123571614952001000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23350.671520001009061000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24343.331300000007852000000000
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18339.001170000610514001000000
.....................................................................................................AGGGAACGGTTGCTGATGATG.............................................................................................................................21125.0025003000005301301000
.....................................................................................................AGGGAACGGTTGCTGATGATGT............................................................................................................................22122.0022001100115101200000
...........................................................................................................................................................GTGGCTGTTCTTTTT.............................................................................15318.67560000000027281000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21318.3355000550000000000000
....................................................................................................................................................TATCACAGTGGCTGT....................................................................................15315.00450000000012302010000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................23313.33400000002119000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................24312.67380000002117000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2237.3322000000128101000000
.....................................................................................................AGGGAACGGTTGCTGATGAT..............................................................................................................................2014.00400200000100100000
.....................................................................................................AGGGAACGGTTGCTGATGATGTAT..........................................................................................................................2413.00300000000300000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2032.67800053000000000000
....................................................................................................................................................TATCACAGTGGCTGTT...................................................................................1632.67800000010052000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................2422.50500500000000000000
............................................................................................................................GTTC-GAA-ACTCTCACAA-TTTA...................................................................................................2112.00200100000010000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTAA..........................................................................................................................2412.00200000000000101000
..........................................ACCTCA-GTG--CG---------------------AAAATTG...................................................................................................................................................................1812.00200200000000000000
....................................................................................................AAGGGAACGGTTGCTGATGATGTA...........................................................................................................................2412.00200000000000200000
.......................................................................................................................................................................................................TTGCCAGGAC----------------ATGAAACAGAA-----ATATTT2712.00200000000200000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA..........................................................................2521.50300000030000000000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2031.33400030010000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2131.33400000022000000000
............................................................................................................................GTTC-GAA-ACTCTCACAA-TT.....................................................................................................1911.00100100000000000000
..........................................................................................................................................................................TGTTTGGCAATCGATCTACG.........................................................2011.00100000000010000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTT...........................................................................................................................2311.00100000000000100000
.....................................................................................................AGGGAACGGTTGCTGATGATGTAGT.........................................................................................................................2511.00100000000000100000
....................................................................................................AAGGGAACGGTTGCTGATGATG.............................................................................................................................2211.00100000000010000000
............................................................................................................................GTTC-GAA-ACTCTCACAA-TTT....................................................................................................2011.00100100000000000000
.....................................................................................................AGGGAACGGTTGCTGATGG...............................................................................................................................1911.00100100000000000000
....................................................................................................AAGGGAACGGTTGCTGATGAT..............................................................................................................................2111.00100000000010000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................2411.00100000001000000000
..................................................................................................AGAAGGGAACGGTTGCTGATGA...............................................................................................................................2211.00100000000000100000
.........................................................................................................AACGGTTGCTGATGATGTA...........................................................................................................................1911.00100000000000100000
..................................................................................................AGAAGGGAACGGTTGCTGATG................................................................................................................................2111.00100000000000100000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2230.67200000002000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2130.67200020000000000000
dm3
CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAGAA-----ATATTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................AGGGAACGGTTGCTGATGATGTA...........................................................................................................................23138897.00388970000303324285800100000000000000000000034501000000000000000000000000000000000000000000007583125013510238892101100040020582660971910041171150047519810900010002000000000000000002811721412901213020000051000000000000120100000000000000000000400000000000000000000120200000000000100000006832010000000010000340113020000000000000100001100012016730901140001001000002032821126632202101190510100
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2316947.00694700005072175351212800000000000000000000000000000000000000000000000100000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021647202570854621801290000000000000000000000000000000000000001010100000000001247961920100002000000000000000010001010100000100
.....................................................................................................AGGGAACGGTTGCTGATGATGT............................................................................................................................2216352.006352000000233921000000000000000000000000362000000000000000000000000000000000000000000000062261479338000010000000000140000458910040127400100000000000000000000036749517271720000200000000000000000001000000000000000000000000000000000010000000000000000000000000000014600000010000000000000000000000000000000000000000002883800800001000000000005000010000000040000000
.....................................................................................................AGGGAACGGTTGCTGATGATG.............................................................................................................................2114948.004948000000231000000000000000000000000039670000000000000000000000000000000000000000000000871012124500000000000100020000204000800800000000000000000000000031207162293000000000000000000000000000000000000000000000000000100000000000000000000000000000000000003300000000000000000000000000000000000000000001001003101000200000000000000001000000000000010000010
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
.....................................................................................................AGGGAACGGTTGCTGATGAT..............................................................................................................................2013286.003286000000020000000000000000000000000029730000000000000000000000000000000000000000000000320041500000000000000000000060005000000000000000000000000000021186000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000201100100000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................242585.501171000001011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000076132109070500300000000000000000000000000000000000000000000000000000007627500000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
.....................................................................................................AGGGAACGGTTGCTGATGA...............................................................................................................................191212.002120000000000000000000000000000000000102000000000000000000000000000000000000000000000010100130000000000000000000001000300200000000000000000000000001612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000049200000000000000000000000000000000000000000
....................................................................................................AAGGGAACGGTTGCTGATGATGTA...........................................................................................................................241193.001930000003100000000000000000000000000000000000000000000000000000000000000000000000001811260000000000000000000016000200100000000000000000000000011117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000129000000000000000000000000000000000000000000
......................................................................................................GGGAACGGTTGCTGATGATGTA...........................................................................................................................221167.001670000001400000000000000000000000000100000000000000000000000000000000000000000000005840029000000000000000603007220002008000000000000000000000000054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTAA..........................................................................................................................241134.0013400000023000000000000000000000000002000000000000000000000000000000000000000000000028510270000000000000000000014800020012000000000000000000000000256000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTC...........................................................................................................................231127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000003102500000000000000020000040000003000000000000000000000000047420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
.....................................................................................................AGGGAACGGTTGCTGATGATGTAG..........................................................................................................................24196.009600000001000000000000000000000000001000000000000000000000000000000000000000000000019903300000000000000050000300000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000000000000000000000000000000000000000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTT...........................................................................................................................23186.0086000000330000000000000000000000000000000000000000000000000000000000000000000000000250150000000000000002000028000100200000000000000000000000001120020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000016000000000000000000010000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTG...........................................................................................................................23171.007100000061000000000000000000000000000000000000000000000000000000000000000000000000010301300000000000000010000250000017000000000000000000000000023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
....................................................................................................AAGGGAACGGTTGCTGATGATGT............................................................................................................................23164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000000000000000000000000000000000000000000601900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTAT..........................................................................................................................24151.005100000013000000000000000000000000002000000000000000000000000000000000000000000000011100300000000000000000000000001003000000000000000000000000143600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000010000000
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................24144.004400000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261100000000000000000000000000000000000000000
.....................................................................................................AGGGAACGGTTGCTGATG................................................................................................................................18144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000010000002000000000000000000000000785000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................24133.00330000001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000
....................................................................................................AAGGGAACGGTTGCTGATGATG.............................................................................................................................22130.00300000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
......................................................................................................GGGAACGGTTGCTGATGATGT............................................................................................................................21127.0027000000000000000000000000000000000010000000000000000000000000000000000000000000000800030000000000000000000000000300500000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTAAA.........................................................................................................................25125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000003100000100000000000000000000000002202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
.....................................................................................................AGGGAACGGTTGCTGATGATGC............................................................................................................................22122.0022000000100000000000000000000000000000000000000000000000000000000000000000000000000300010000000000001000000001000000000000000000000000000000000511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................24121.00210000001022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000000000000
............................................................................................................................GTTT-GAA-ACTCTCACAA-TTTA...................................................................................................21121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000700060000000000000000000004000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................22121.0021000000040100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000009400000000000000000000000000000000000000000
droEre2
CATTTGTGG-------CAC-GCA--------TTTGTG---TCACCTTG-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTAC----------------ATGAAATAGAA-----ATATTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22310965.6732897490027970056160
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2132527.677583713686301510
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2311065.00106535103000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223198.00594958500000
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203195.675877550501240
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213131.673953702500000
.....................................................................................................AGGGAACGGTGGCTGATGATGTA...........................................................................................................................23144.004488028000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21326.007817700000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23319.005715600000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23318.6756163800020
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20317.3352411100000
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20316.334904801000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19314.3343103001110
.....................................................................................................AGGGAACGGTGGCTGATGATGT............................................................................................................................22111.00113503000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20310.673223900000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................2429.001801701000
.....................................................................................................AGGGAACGGTGGCTGATGATG.............................................................................................................................2116.0061203000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2235.331661000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2215.0054100000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2414.0042200000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2132.3374300000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1932.0061500000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.0066000000
.....................................................................................................AGGGAACGGTGGCTGATGATGC............................................................................................................................2212.0020200000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................2431.6750500000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2331.3342200000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.3341300000
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1831.3340400000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................2231.0030300000
......................................................................................................GGGAACGGTGGCTGATGATGTA...........................................................................................................................2211.0011000000
............................................................................................................................GTTC-GAA-ACTCTCACAA-TTTA...................................................................................................2111.0011000000
.............................................................................................................................................AA-TTTATATCACAGTGGCTGTTCTTTTT.............................................................................2811.0010100000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2131.0030300000
.....................................................................................................AGGGAACGGTGGCTGATGATGTAT..........................................................................................................................2411.0010100000
........................................................................................................GAACGGTGGCTGATGATG.............................................................................................................................1811.0010001000
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1831.0032100000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT..........................................................................2211.0010100000
.....................................................................................................AGGGAACGGTGGCTGATGA...............................................................................................................................1911.0010001000
.....................................................................................................AGGGAACGGTGGCTGATGATGTAG..........................................................................................................................2411.0010001000
......................................................................................................GGGAACGGTGGCTGATGATGT............................................................................................................................2111.0011000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2411.0010100000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT..........................................................................2311.0010100000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2330.6720200000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2430.6722000000
......................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1930.6720200000
droYak3
CATTTGTGG-------CCC-GCA--------TTTTTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAA-ACTCTCTCAA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGAC----------------ATGAAATAGAA-----ATGCTTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22388528.672655860234265335500120000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21315870.00476100634753810080000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................23110507.0010507021050500000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2232566.67770000770000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031006.673020015300310010000
.....................................................................................................AGGGAACGGTTGCTGATGATGTA...........................................................................................................................231878.00878007761020000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................213276.008280082800000000
.....................................................................................................AGGGAACGGTTGCTGATGATGT............................................................................................................................221177.0017701159170000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233165.004950149400000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................203138.334150041500000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................242104.502090020900000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21392.002760926700000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23390.332710226900000000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19362.001860218400000000
.....................................................................................................AGGGAACGGTTGCTGATGATG.............................................................................................................................21149.0049104080000000
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.001410114000000000
.....................................................................................................AGGGAACGGTTGCTGATGATGC............................................................................................................................22133.0033003300000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22331.3394009400000000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20322.3367006700000000
..................................................................................................AGAAGGGAACGGTTGCTGATGAT..............................................................................................................................23122.0022001920100000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................19321.0063016200000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................21316.6750005000000000
....................................................................................................AAGGGAACGGTTGCTGATGATGT............................................................................................................................23115.0015001320000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................24113.0013001300000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20312.6738023600000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................22112.0012011100000000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTT............................................................................2019.00900900000000
..................................................................................................AGAAGGGAACGGTTGCTGATGA...............................................................................................................................2219.00900720000000
..................................................................................................AGAAGGGAACGGTTGCTGATG................................................................................................................................2119.00900720000000
.....................................................................................................AGGGAACGGTTGCTGATGA...............................................................................................................................1918.00800710000000
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1837.3322012100000000
........................................................................................................................................................ACAGTGGCTGTTCTTTTTT............................................................................1917.00700700000000
....................................................................................................AAGGGAACGGTTGCTGATGATGTA...........................................................................................................................2416.00600420000000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2235.6717001700000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2235.6717001700000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2134.6714001400000000
.....................................................................................................AGGGAACGGTTGCTGATGAT..............................................................................................................................2014.00400400000000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTT............................................................................2114.00400400000000
.....................................................................................................AGGGAACGGTTGCTGATGATGTT...........................................................................................................................2314.00400400000000
..................................................................................................AGAAGGGAACGGTTGCTGATGAC..............................................................................................................................2313.00300300000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTTT...........................................................................2323.00600600000000
droEug1
CATCTGTGG-------CAT-GCA--------TTTGTG---TCACCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAA-ATTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCAGGAC----------------ATGAAATTGAA-----------SizeHit CountTotal NormTotal
No Reads
droBia1
CATCTGTGG-------CAC-GCA--------TTTGTG---TCACCTCA-GTG--CG---------------------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAA-ACTCTCACAG-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAGTGGTTTTCCAGGAC----------------ATGAAATGGAAA----ACATTCSizeHit CountTotal NormTotal
No Reads
droTak1
CATCTGTGG-------CAT-GCA--------TTTGTG---TCAACTGA-ATG--TGAAAACT--------------GAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAA-ACTCTCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCAGGAC----------------ATGAAATAGAAA----TTATTCSizeHit CountTotal NormTotal
No Reads
droEle1
CATACAGGG-------AAC-GGA--------TTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGAGGTTTTAAAATAA-------ATAGCGCACATAAAACAGAA-----A-----SizeHit CountTotal NormTotal
No Reads
droRho1
CATCCAGGA-------AAC-GCA--------TTTGTG---TCACCTCA-ATT--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAGTGGTTTTTCAGGAC----------------ACGAAATTGAAA----ATATTCSizeHit CountTotal NormTotal
No Reads
droFic1
CATCTGCGG-------CAC-GCA--------TTCGTG---TCTCCTCA-ATG--TG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAA-ATTCTCACCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAGTGGTTTTCCAGGAC----------------ACGAAATAGAAA----ATATCCSizeHit CountTotal NormTotal
No Reads
droKik1
CATCAGCGC-------GGCCTCA---------GTGTA---TCATCTCT-GTT--GG---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAA-ATTCACACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTACCCAGGAC----------------ACGAAATTGAAAAT--ATATATSizeHit CountTotal NormTotal
No Reads
droAna3
CATTTGTGG-------CAC-GCA--------TTTGTG---TCACGTTG-GTGGACA---------------------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT------ATTCGCATCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22315043.3345130367447520074
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2133049.3391489790392028
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2312039.002039920300000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223462.001386013860000
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203276.00828267920082
.....................................................................................................AGGGAACGGTCGCTGCTGATGTA...........................................................................................................................23165.006514320001
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21357.6717301720001
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20337.0011101110000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21335.6710740670000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23334.6710401040000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23333.671013980000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24132.00320320000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19317.33528390023
.....................................................................................................AGGGAACGGTCGCTGCTGATGT............................................................................................................................22110.0010091000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2219.009450000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1938.67260260000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2038.00245190000
.....................................................................................................AGGGAACGGTCGCTGCTGATGC............................................................................................................................2217.007070000
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1836.00180180000
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1836.00180180000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2036.00187110000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2235.33160150001
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2134.33130130000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2233.3310190000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2433.009170010
.....................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.006330000
......................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1931.675050000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.675050000
.....................................................................................................AGGGAACGGTCGCTGCTGATGTAA..........................................................................................................................2411.001010000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2421.002020000
.....................................................................................................AGGGAACGGTCGCTGCTGAT..............................................................................................................................2011.001010000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2411.001010000
....................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1931.003030000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTTT...........................................................................2111.001010000
........................................................................................................................................................ACAGTGGCTGTTCTTTTTT............................................................................1911.001010000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2131.003030000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTT............................................................................2011.001010000
droBip1
CATCTGTGG-------CAC-GAA--------TTTGTGGCATCACCTTG-GTGG-AC---------------------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT------ATTCGCCTCA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATTCTGAAAGGAT----------------A----ATATAG-----ATACCTSizeHit CountTotal NormTotal
No Reads
dp5
CATCTCCGC----CGCCGC-GCA--------TTCGC-----------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTTGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCACCGATC------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22338201.331146040681510770178307000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2136091.0018273012371700029205000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2314325.00432505542662002000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2231760.0052800452724000000
.....................................................................................................AGGGAACGGTTGCTGCTGATGTA...........................................................................................................................231431.00431015280013500001
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203403.001209013410741000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213194.005820505770000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................213169.33508025060000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233159.004770124641000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233100.003000222770001000
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20362.00186001842000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24257.50115021121000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20340.001200106140000000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................22330.339107840000000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19327.6783024590000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22324.677406680000000
.....................................................................................................AGGGAACGGTTGCTGCTGATGT............................................................................................................................22119.001901120600000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20317.0051032190000000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................23313.674108330000000
.....................................................................................................AGGGAACGGTTGCTGCTGATG.............................................................................................................................21112.00120060600000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................22112.00120570000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................24310.673206260000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22310.333109220000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1938.332502230000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2138.002401230000000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1937.6723010130000000
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1837.002108130000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2417.0070070000000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT..........................................................................2216.0060060000000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2135.331600160000000
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1835.001503120000000
.....................................................................................................AGGGAACGGTTGCTGCTGATGTAA..........................................................................................................................2414.0040010300000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2434.001202100000000
.....................................................................................................AGGGAACGGTTGCTGCTGATGTT...........................................................................................................................2314.0040020200000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2333.0090180000000
.....................................................................................................AGGGAACGGTTGCTGCTGATGTC...........................................................................................................................2313.0030020100000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA.........................................................................2612.0020020000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2332.0060230001000
.....................................................................................................AGGGAACGGTTGCTGCTGATGC............................................................................................................................2212.0020020000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2132.0060150000000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTTTT............................................................................2412.0020020000000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT..........................................................................2312.0020020000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTT................................................................................1831.6750500000000
....................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1931.6750050000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC..........................................................................2521.5030030000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................2231.3340040000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................2231.3340310000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................2531.3340040000000
droPer2
CATCTCCGC----CGCCGC-GCA--------TT--------CACC---------------------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAG-TTTCGCACAA-TTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CAGGACTTCAGTT---------TCGAAATATAAAAAAAAAGTGTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223146.00438941300115
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21325.00758620005
.....................................................................................................AGGGAACGGTTGCTGCTGATGTA...........................................................................................................................23115.00154011000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21314.67440440000
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2035.0015680001
.....................................................................................................AGGGAACGGTTGCTGCTGATG.............................................................................................................................2114.004102010
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2314.004220000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2033.009090000
.....................................................................................................AGGGAACGGTTGCTGCTGATGTAA..........................................................................................................................2412.002002000
.....................................................................................................AGGGAACGGTTGCTGCTGATGT............................................................................................................................2211.001001000
.....................................................................................................AGGGAACGGTTGCTGCTGATGTAGT.........................................................................................................................2511.001001000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................1931.003030000
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2030.672020000
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2030.331100000
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1930.331010000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2230.331010000
......................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1930.331010000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2230.331010000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................2330.331010000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2230.331010000
droWil2
TATTTTTAGATTTCTCTGTTTTA----CCGTTTTCTT---TCATTT-----------------------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAAC----------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22335155.671054670180701036555
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2138217.002465103441243042
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2311572.001572026015451
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031168.673506059534411
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................2331099.333298010032880
.....................................................................................................AGGGAACGGTTGCTGTTGATGTA...........................................................................................................................231841.008410008410
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193320.009600609504
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................243217.006510506460
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................223189.675690405650
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................183128.333850303820
.....................................................................................................AGGGAACGGTTGCTGTTGATGT............................................................................................................................22185.0085000850
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21370.3321101430680
.....................................................................................................AGGGAACGGTTGCTGTTGATG.............................................................................................................................21154.0054000540
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA..........................................................................25346.001380001380
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18345.001350101340
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................23341.671250001250
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22340.331210101200
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23332.3397000970
.....................................................................................................AGGGAACGGTTGCTGTTGATGTAA..........................................................................................................................24131.0031000310
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................24130.0030000300
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22318.6756000560
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20316.00480310170
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24210.5021010200
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20310.33310120190
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT..........................................................................22110.0010000100
....................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2139.3328010270
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2238.6726000260
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA..........................................................................2518.00800080
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2437.3322000220
.....................................................................................................AGGGAACGGTTGCTGTTGA...............................................................................................................................1917.00700070
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2217.00703040
.....................................................................................................AGGGAACGGTTGCTGTTGATGTAAA.........................................................................................................................2516.00600060
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1936.0018000180
..................................................................................................AGAAGGGAACGGTTGCTGTTGA...............................................................................................................................2215.00500050
...................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2134.6714000140
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2134.3313000130
....................................................................................................AAGGGAACGGTTGCTGTTGATG.............................................................................................................................2214.00400040
.....................................................................................................AGGGAACGGTTGCTGTTGAT..............................................................................................................................2014.00400040
........................................................................................................................................................ACAGTGGCTGTTCTTTTTT............................................................................1914.00400040
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................2433.6711000110
....................................................................................................................................................TATCACAGTGGCTGTTCTTTAA.............................................................................2243.2513000130
....................................................................................................AAGGGAACGGTTGCTGTTGATGTA...........................................................................................................................2413.00300030
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTT............................................................................2113.00301020
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2413.00301020
.....................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.67807010
........................................................................................................................................................ACAGTGGCTGTTCTTTTTA............................................................................1932.67800080
..................................................................................................AGAAGGGAACGGTTGCTGTTGAT..............................................................................................................................2312.00200020
......................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1932.00600060
.........................................CATTT-----------------------------------------TTTGTTTAAAAAGA..................................................................................................................................................1912.00200020
............................................................................................................................GTAT-ACCATTTTGTTTAACAATA...................................................................................................2312.00200020
......................................................................................................GGGAACGGTTGCTGTTGATGTA...........................................................................................................................2212.00200020
.....................................................................................................AGGGAACGGTTGCTGTTGATGTG...........................................................................................................................2312.00200020
.......................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1831.67500050
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2331.33402020
...................................................................................................................................................ATATCACAGTGGCTGTTCTT................................................................................2031.33400040
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA...........................................................................2231.33400040
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC..........................................................................2511.00100010
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT..........................................................................2511.00100010
.....................................................................................................AGGGAACGGTTGCTGTTGATGTAT..........................................................................................................................2411.00100010
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTTG...........................................................................2111.00100010
.....................................................................................................AGGGAACGGTTGCTGTTGATGTAG..........................................................................................................................2411.00100010
.............................................................................................................................................AACAATATATCACAGTGGCTGTTCTTTT..............................................................................2811.00100010
........................................TCATTT-----------------------------------------TTTGTTTAAAAAGA..................................................................................................................................................2011.00100010
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTTAA..........................................................................2211.00100010
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2411.00100010
.....................................................................................................AGGGAACGGTTGCTGTTGATGTT...........................................................................................................................2311.00100010
.....................................................................................................AGGGAACGGTTGCTGTTGATGTGT..........................................................................................................................2411.00100010
.....................................................................................................AGGGAACGGTTGCTGTTGATGC............................................................................................................................2211.00100010
..........................................................................................................ACGGTTGCTGTTGATGTA...........................................................................................................................1811.00100010
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC..........................................................................2531.00300030
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2131.00300030
droVir3
CAGCCGAAA-------G-T-ACT--TT-----TATTA---TTAACTAACTTG--TGCAATTTGTTCACTTT--AATGACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GAC-CTTTGTACTC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC----------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
.....................................................................................................AGAGAACGTTCGCTGTTGATGTA...........................................................................................................................23114177.0014177001161000000001212500000000000000010085130602073140069101934372554485419368238212483151470000027027024290220301677245259282338
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2314063.00406300014990000000000000000000000000000000000000268161105918516791160102701046300025020000042413180000202151591868180
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
.....................................................................................................AGAGAACGTTCGCTGTTGATG.............................................................................................................................2111078.0010780002800000000020000000000000000002010610000794555949451014779523433280001433601000611551000002722221615
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
.....................................................................................................AGAGAACGTTCGCTGTTGATGT............................................................................................................................221402.004020002400000000212000000000000000000205318180000113219311111212010007400000098570000005119141117
.....................................................................................................AGAGAACGTTCGCTGTTGATGTAA..........................................................................................................................241238.0023800050000000001000000000000000000002034000081612333132502000000000007552000000494181416
....................................................................................................AAGAGAACGTTCGCTGTTGATGTA...........................................................................................................................241197.00197000200000000010000000000000000001001420000174943310211000100021000003528000000201260
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................241130.0013000041000000000000000000000000000000000000000213425611104620002400000012200000001120
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24268.50137000370000000000000000000000000000000000000004432574946410003000000221600000065625
.....................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-........................................................................................................................25166.006600010000000000000000000000000000000001000011253202111000000010000012900000062528
.....................................................................................................AGAGAACGTTCGCTGTTGAT..............................................................................................................................20164.006400000000000000000000000000000000000011000000300051523410001310000020700000024252
.....................................................................................................AGAGAACGTTCGCTGTTGATGTC...........................................................................................................................23158.0058000000000000000000000000000000000000010000318272100110100000120000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
............................................................................................................................GT-C-GAC-CTTTGTACTC-TTTA...................................................................................................20145.004500040000000010000000000000000000601431600001110000000000000010000000500000000001
....................................................................................................AAGAGAACGTTCGCTGTTGATG.............................................................................................................................22142.00420002000000000000000000000000000000100000000750154131320000300000002100000001000
.....................................................................................................AGAGAACGTTCGCTGTTGA...............................................................................................................................19240.5081000000000000010000000000000000000000000000221195342060111000400000001500000041000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC..........................................................................25132.00320008000000000000000000000000000000000000000001410210212000900000000100000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
....................................................................................................AAGAGAACGTTCGCTGTTGATGT............................................................................................................................23127.00270002000000000000000000000000000000001200000320001010100000220000011500000000111
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
.....................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-......................................................................................................................26114.00140000000000000000000000000000000000000000001210000000001000000000001100000023110
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
.....................................................................................................AGAGAACGTTCGCTGTTGATGC............................................................................................................................22111.00110007000000001000000000000000000000000000000000000000000000010000010100000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................2419.0090000000000000000000000000000000000000000000001000121100000000000011100000000000
.....................................................................................................AGAGAACGTTCGCTGTTGATGTAG..........................................................................................................................2419.0090000000000000100000000000000000000000000000100020100000000000000000210000000010
....................................................................................................AAGAGAACGTTCGCTGTTGAT..............................................................................................................................2119.0090000000000000000000000000000000000000000000000110100002000200000000000000000101
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA...........................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
.....................................................................................................AGAGAACGTTCGCTGTTGATGTT...........................................................................................................................2318.0080000000000000000000000000000000000000000000110000020000000030000000100000000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2218.0080003000000000000000000000000000000000000000010001000000000100000010100000000000
...................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
.....................................................................................................AGAGAACGTTCGCTGTTGATGTG...........................................................................................................................2317.0070000000000000000000000000000000000000000001320000000000000010000000000000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC...........................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2416.0060001000000000000000000000000000000000000000000002020000000000000000000000001000
....................................................................................................................................................TATCACAGTGGCTGTTC..................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
..................................................................................................................................................TATATCACAGTGGCTGTTCTTT...............................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
.....................................................................................................AGAGAACGTTCGCTGTTGATGTAT..........................................................................................................................2415.0050000000000000000000000000000000010000000000200000000000000100000000000000010000
....................................................................................................AAGAGAACGTTCGCTGTTGATGTAA..........................................................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000200000001001
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC.........................................................................2624.5090002000000000000000000000000000000000000000100000002000000400000000000000000000
.....................................................................................................AGAGAACGTTCGCTGTTGATC.............................................................................................................................2124.5090001000000000000000000000000000000000000000110010100100000210000000000000000000
...................................................................................................GAAGAGAACGTTCGCTGTTGATG.............................................................................................................................2314.0040000000000000000000000000000000000000000000100000100010000000000000000000000010
........................................................................................................GAACGTTCGCTGTTGATGTA...........................................................................................................................2014.0040000000000000000000000000000000000001000000200000000000000000000000000000010000
..........................................................................................................ACGTTCGCTGTTGATGTA...........................................................................................................................1814.0040000000000000000000000000000000000000000000210000000000000000000000100000000000
.....................................................................................................AGAGAACGTTCGCTGTTGATGA............................................................................................................................2214.0040000000000000000000000000000000000000000000120000000000000010000000000000000000
.......................................................................................................AGAACGTTCGCTGTTGATGTA...........................................................................................................................2114.0040001000000000100000000000000000000001000000000000000000000000000000100000000000
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC...........................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
................................................................................CTCGTCAATTGTTTAAAAGGA..................................................................................................................................................2113.0030000000000000000000000000000000000000000000100000000000000000000000100000001000
droMoj3
C---TGTGA-------AAT-AAATCTTGA--ATAGTG---TTATCTTAAGTA--TGTGATTTGTTCAGTTTCAAATCGTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AAT-TCATTTAATC-TTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAG----------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223175659.67526979301005269462
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21371420.67214262141002142425
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................23120128.00201280000201271
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................2339565.33286966000286900
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2035461.67163853000163802
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2234979.00149371000149360
....................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2131153.673461000034610
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................243749.332248000022480
....................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................203612.001836000018360
.....................................................................................................AGAGAACGTTCGCTGTTGATGT............................................................................................................................221586.005860204003820
.....................................................................................................AGAGAACGTTCGCTGTTGATGTA...........................................................................................................................231565.005651146004180
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................221463.0046300004630
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................241402.0040200004020
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213393.671181200011790
....................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193276.6783001008281
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233230.3369100006910
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................242181.5036320003610
.....................................................................................................AGAGAACGTTCGCTGTTGATG.............................................................................................................................211171.00171064001070
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................203132.3339710003960
.....................................................................................................AGAGAACGTTCGCTGTTGATGC............................................................................................................................221129.0012900001290
....................................................................................................AAGAGAACGTTCGCTGTTGATGT............................................................................................................................231116.0011604500710
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22389.6726900002690
......................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20389.6726900002690
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC..........................................................................25170.00700000700
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................23368.6720600002060
.......................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................19365.3319600001960
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................25353.6716100001610
........................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.6714300001430
....................................................................................................AAGAGAACGTTCGCTGTTGATG.............................................................................................................................22147.004701900280
....................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................21346.6714000001400
......................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................19331.33940000940
...................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................21331.33940000940
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22328.67860000860
.......................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................18328.33850000850
....................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18326.33790000790
.....................................................................................................AGAGAACGTTCGCTGTTGATGTAA..........................................................................................................................24124.00240600180
....................................................................................................AAGAGAACGTTCGCTGTTGATGC............................................................................................................................23122.00220000220
.....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................22316.00480000480
.....................................................................................................AGAGAACGTTCGCTGTTGATGTT...........................................................................................................................23115.0015080070
....................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................19314.67440000440
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG...........................................................................22113.00130000130
.......................................................................................................................................................CACAGTGGCTGTTCTTTTTT............................................................................20112.00120000120
......................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT..........................................................................23111.00110000110
.....................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................19311.00330000330
droGri2
CAACCGCTG-------CAT-AAA--------TTCAC-----CA------ATG--C--------------------------------TATGTTTAACC-ACAGGGAACTGCTGCTGCTGATATACAAC-CAT-ATTTATACACGACTATATCACAGTGGCTGTTCTTTTTGGTTGC---ATCG--CCATTTGCAACGATTTGTCAG-----------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................2262.5015105
....................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2161.831129
....................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2060.33202

Generated: 10/20/2015 at 11:22 PM