ID:

dse-mir-31a

 Coordinate:

scaffold_1:11168773-11168864 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.5

Flybase annnotation

pre_miRNA [Dsec\mir-31a-RM]; utr3 [utr3_minus_3460]; miRNA [Dsec\miR-31a-RA]

No Repeatable elements found

Sense Strand Reads

GAACCAAATCGGTTGGTGTTTCGGCCATCTACGATCGATCGTATAGCACCTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATCGAACAAAACAGTAGTGGAGTTTTAAGCTCCATTGT

************************************************..((((((((..(((((((.(((((.(((((((((.....((.((((....)))).))....)))))))))))))).)))))))..))))))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 V113

male body		 M054

female body

 V115

head
...............................................................TGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 0 1 177564.00 177564 86951 54651 10752 25210
...............................................................TGGCAAGATGTCGGCATAGCTG........................................................................................................... 22 0 1 27735.00 27735 4899 8858 9792 4186
...............................................................TGGCAAGATGTCGGCATAGCT............................................................................................................ 21 0 1 18625.00 18625 867 7022 7494 3242
...............................................................TGGCAAGATGTCGGCATAGCTGAT......................................................................................................... 24 1 1 4111.00 4111 849 1928 350 984
...............................................................TGGCAAGATGTCGGCATAGCTT........................................................................................................... 22 1 1 2128.00 2128 3 1044 612 469
...............................................................TGGCAAGATGTCGGCATAGC............................................................................................................. 20 0 1 1931.00 1931 129 467 1052 283
...............................................................TGGCAAGATGTCGGCATAGCTGT.......................................................................................................... 23 1 1 1921.00 1921 119 966 392 444
...............................................................TGGCAAGATGTCGGCATAGCTGAA......................................................................................................... 24 1 1 1801.00 1801 414 796 266 325
.............................................................................................................CGCTATGCTGCATCTAGTCAGT............................................................. 22 0 1 1662.00 1662 684 122 638 218
...............................................................TGGCAAGATGTCGGCATAG.............................................................................................................. 19 0 1 1127.00 1127 80 223 647 177
................................................................GGCAAGATGTCGGCATAGCTGA.......................................................................................................... 22 0 1 1001.00 1001 71 46 868 16
................................................................GGCAAGATGTCGGCATAGCTG........................................................................................................... 21 0 1 902.00 902 0 9 889 4
................................................................GGCAAGATGTCGGCATAGCT............................................................................................................ 20 0 1 684.00 684 1 9 673 1
...............................................................TGGCAAGATGTCGGCATACCTGA.......................................................................................................... 23 1 1 607.00 607 108 459 18 22
...............................................................TGGCAAGATGTCGGCATAGCTGACGTT...................................................................................................... 27 0 1 550.00 550 395 60 20 75
...............................................................TGGCAAGATGTCGGCATAACTGA.......................................................................................................... 23 1 1 476.00 476 37 400 6 33
...............................................................TGGCAAGATGCCGGCATAGCTGA.......................................................................................................... 23 1 1 377.00 377 207 116 21 33
...............................................................TGGCAAGATGTCGGCATAGCTGTT......................................................................................................... 24 2 1 376.00 376 9 202 48 117
...............................................................TGGCAAGATGTCGGCATATCTGA.......................................................................................................... 23 1 1 350.00 350 21 291 26 12
...............................................................TGGTAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 312.00 312 274 21 2 15
...............................................................TGGCAAGATGTCGGCATAGCTGATT........................................................................................................ 25 2 1 293.00 293 30 138 27 98
...............................................................TGGCAAGATGTCGGCATAGCTGACG........................................................................................................ 25 0 1 272.00 272 136 66 17 53
...............................................................TGCCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 270.00 270 154 52 28 36
..............................................................CTGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 24 1 1 266.00 266 131 83 19 33
...............................................................TGGCAAGATGTTGGCATAGCTGA.......................................................................................................... 23 1 1 264.00 264 145 46 46 27
...............................................................TGGCAAGATGTCGGCATAGCTGAC......................................................................................................... 24 0 1 262.00 262 130 56 20 56
...............................................................TGGCGAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 232.00 232 148 47 3 34
...............................................................TGTCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 229.00 229 93 47 53 36
...............................................................TGGCAAGATCTCGGCATAGCTGA.......................................................................................................... 23 1 1 228.00 228 177 26 7 18
...............................................................CGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 226.00 226 127 60 13 26
.............................................................................................................CGCTATGCTGCATCTAGTCAG.............................................................. 21 0 1 222.00 222 8 11 173 30
...............................................................TGGCAAGGTGTCGGCATAGCTGA.......................................................................................................... 23 1 1 218.00 218 133 65 3 17
...............................................................TTGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 200.00 200 69 35 55 41
................................................................TGCAAGATGTCGGCATAGCTGA.......................................................................................................... 22 1 1 198.00 198 112 35 30 21
...............................................................TGGCAAGATGTCGGCATAGCCGA.......................................................................................................... 23 1 1 196.00 196 78 70 5 43
...............................................................TGGCAAGATGTCGGCATAGCTGG.......................................................................................................... 23 1 1 194.00 194 118 47 13 16
...............................................................TGGCATGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 173.00 173 136 8 20 9
...............................................................TGGCAAGATGTCGGCCTAGCTGA.......................................................................................................... 23 1 1 173.00 173 97 58 0 18
...............................................................TGGCAAGATGTCAGCATAGCTGA.......................................................................................................... 23 1 1 172.00 172 89 46 7 30
...............................................................TGGCAAGATTTCGGCATAGCTGA.......................................................................................................... 23 1 1 162.00 162 68 24 53 17
...............................................................TGGCAGGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 161.00 161 109 35 0 17
...............................................................TGGCAAGATGTCGGCATAGCA............................................................................................................ 21 1 1 159.00 159 2 71 37 49
...............................................................TCGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 152.00 152 71 48 8 25
...............................................................TGGCAAGATGTCGGCATAGCTGC.......................................................................................................... 23 1 1 152.00 152 71 39 20 22
...............................................................TGGCAAGATGTCGGCACAGCTGA.......................................................................................................... 23 1 1 151.00 151 80 49 2 20
...............................................................TGGAAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 130.00 130 18 28 51 33
...............................................................TGGCAAGATGTCGGCATCGCTGA.......................................................................................................... 23 1 1 125.00 125 52 18 43 12
...............................................................TGGCAAGATGTCGGCGTAGCTGA.......................................................................................................... 23 1 1 125.00 125 77 31 3 14
...............................................................TGGCAAGACGTCGGCATAGCTGA.......................................................................................................... 23 1 1 123.00 123 63 39 3 18
.................................................................GCAAGATGTCGGCATAGCTGA.......................................................................................................... 21 0 1 123.00 123 34 23 55 11
...............................................................TGACAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 121.00 121 63 28 18 12
...............................................................TGGCAAGATGTCGGCATAGCTGAAT........................................................................................................ 25 2 1 120.00 120 15 54 7 44
...............................................................TGGCAAGATGTCGGCATAGCTGAAA........................................................................................................ 25 2 2 116.50 233 38 109 39 47
...............................................................TGGCAAGATGTCGGCATAGCTTT.......................................................................................................... 23 2 1 108.00 108 2 34 55 17
...............................................................TGGCCAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 108.00 108 41 53 4 10
...............................................................TGGCAAGATGTCGGCATACCTG........................................................................................................... 22 1 1 107.00 107 10 71 19 7
...............................................................TGGCAAGATGTCGGCATGGCTGA.......................................................................................................... 23 1 1 106.00 106 70 24 0 12
...............................................................TGGCAAGATGACGGCATAGCTGA.......................................................................................................... 23 1 1 103.00 103 59 19 15 10
...............................................................TAGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 101.00 101 33 24 9 35
...................................................................AAGATGTCGGCATAGCTGA.......................................................................................................... 19 0 1 99.00 99 58 22 6 13
...............................................................TGGCAAGATGTCTGCATAGCTGA.......................................................................................................... 23 1 1 98.00 98 23 28 9 38
...............................................................TGGCAAGATGTCGACATAGCTGA.......................................................................................................... 23 1 1 98.00 98 53 25 7 13
...............................................................TGGCAAGATATCGGCATAGCTGA.......................................................................................................... 23 1 1 97.00 97 44 21 1 31
...............................................................TGGCAAGATGTCGCCATAGCTGA.......................................................................................................... 23 1 1 94.00 94 37 35 13 9
...............................................................TGGCAAGATGTCGGTATAGCTGA.......................................................................................................... 23 1 2 93.00 186 135 21 10 20
...............................................................TGGCAAGATGTCGGCATAGCTA........................................................................................................... 22 1 1 91.00 91 16 38 19 18
...............................................................TGGCAAGATGTCGGCATATCTG........................................................................................................... 22 1 1 90.00 90 2 60 26 2
...............................................................TGGCAAGATGTCGGCATAGCTGACGT....................................................................................................... 26 0 1 90.00 90 65 4 2 19
...............................................................TGGCAAGATGTCGGCATACCT............................................................................................................ 21 1 1 88.00 88 0 54 33 1
...............................................................TGGCAAGATGTCCGCATAGCTGA.......................................................................................................... 23 1 1 88.00 88 34 39 1 14
...............................................................TGGCAAGATGTCGGCATAGCTAA.......................................................................................................... 23 1 1 87.00 87 37 8 18 24
...............................................................TGGCAAAATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 87.00 87 29 18 3 37
...............................................................TGGCAAGATGTCGGCATAACTG........................................................................................................... 22 1 1 86.00 86 2 76 4 4
.................................................................TCAAGATGTCGGCATAGCTGA.......................................................................................................... 21 1 1 86.00 86 48 18 12 8
...............................................................TGGCAAGATGTCGGCATTGCTGA.......................................................................................................... 23 1 1 84.00 84 70 6 1 7
...............................................................TGGCAAGATGTCGGCATAGTTGA.......................................................................................................... 23 1 1 83.00 83 62 12 4 5
...............................................................TTGCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 82.00 82 2 11 64 5
...............................................................TGGCAAGATGTCGGCATAACT............................................................................................................ 21 1 1 81.00 81 0 73 4 4
..............................................................CTGGCAAGATGTCGGCATAGCTG........................................................................................................... 23 1 1 81.00 81 12 28 18 23
...............................................................TGGCAAGATGTCGGCATAGATGA.......................................................................................................... 23 1 1 80.00 80 25 25 2 28
................................................................GGCAAGATGTCGGCATAGC............................................................................................................. 19 0 1 76.00 76 0 0 76 0
...............................................................TGGCAAGATGTCGGCATAGCTTA.......................................................................................................... 23 1 1 76.00 76 24 29 6 17
...............................................................TGGCAAGATGTCGGCATATCT............................................................................................................ 21 1 1 76.00 76 0 49 26 1
...............................................................TGGCAAGATGTAGGCATAGCTGA.......................................................................................................... 23 1 1 75.00 75 42 11 0 22
...............................................................TGTCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 75.00 75 4 8 57 6
...............................................................TGGCAAGATGTCGTCATAGCTGA.......................................................................................................... 23 1 1 74.00 74 21 22 19 12
...............................................................TGGCAAGCTGTCGGCATAGCTGA.......................................................................................................... 23 1 1 73.00 73 33 20 6 14
...............................................................TGGCAAGATGTCGGCATAGCGGA.......................................................................................................... 23 1 1 73.00 73 5 1 62 5
...............................................................TGGCAAGATGTCGGCATAGT............................................................................................................. 20 1 1 73.00 73 0 34 25 14
...............................................................TGGCAAGATGTCGGCATAGCGG........................................................................................................... 22 1 1 71.00 71 0 0 70 1
...............................................................TGGCAAGATGTCGGCATAGCTCA.......................................................................................................... 23 1 1 68.00 68 34 20 2 12
...............................................................TGGCAAGATGTCGGCTTAGCTGA.......................................................................................................... 23 1 1 68.00 68 40 7 16 5
...............................................................AGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 67.00 67 28 11 11 17
................................................................GGCAAGATGTCGGCATAG.............................................................................................................. 18 0 1 67.00 67 0 0 67 0
...............................................................TGGAAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 67.00 67 0 4 61 2
...............................................................TGGCAAGATTTCGGCATAGCTG........................................................................................................... 22 1 1 66.00 66 11 4 45 6
...............................................................TGGCAAGATGGCGGCATAGCTGA.......................................................................................................... 23 1 1 66.00 66 31 30 1 4
................................................................GGCAAGATGTCGGCATAGCTT........................................................................................................... 21 1 1 65.00 65 0 0 65 0
.................................................................GCAAGATGTCGGCATAGCTG........................................................................................................... 20 0 1 65.00 65 1 4 60 0
...............................................................TGGCTAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 62.00 62 52 8 1 1
...............................................................TGGCAACATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 61.00 61 23 27 4 7
.............................................................................................................CGCTATGCTGCATCTAGTCA............................................................... 20 0 1 59.00 59 7 10 26 16
...............................................................TGGCAAGATGTTGGCATAGCTG........................................................................................................... 22 1 1 58.00 58 18 7 28 5
...............................................................TGTCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 57.00 57 2 9 41 5
...............................................................GGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 56.00 56 28 11 7 10
...............................................................TGGCAAGATGTCGGCATAGCTGTTT........................................................................................................ 25 3 1 55.00 55 0 33 6 16
...............................................................TGGCAAGAAGTCGGCATAGCTGA.......................................................................................................... 23 1 1 54.00 54 37 3 1 13
...............................................................TGGCAAGATGTCGGCATAGA............................................................................................................. 20 1 1 51.00 51 0 27 16 8
...............................................................TGGAAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 51.00 51 0 2 45 4
...............................................................TGGCAAGATGCCGGCATAGCTG........................................................................................................... 22 1 1 50.00 50 10 14 20 6
.................................................................GCAAGATGTCGGCATAGCT............................................................................................................ 19 0 1 50.00 50 1 2 47 0
...............................................................TGGCAAGATGTCGGCATAGCG............................................................................................................ 21 1 1 49.00 49 0 1 47 1
...............................................................TGGCAAGATGTCGGCATAGCAT........................................................................................................... 22 2 1 49.00 49 0 24 4 21
..............................................................................................................GCTATGCTGCATCTAGTCAGT............................................................. 21 0 1 48.00 48 6 0 41 1
...............................................................TGGCAATATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 48.00 48 14 15 0 19
................................................................TGCAAGATGTCGGCATAGCTG........................................................................................................... 21 1 1 46.00 46 8 8 25 5
...............................................................TTGCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 42.00 42 0 6 30 6
...............................................................TGGCAAGATGCCGGCATAGCT............................................................................................................ 21 1 1 42.00 42 4 15 18 5
...............................................................TGGCAAGATGTTGGCATAGCT............................................................................................................ 21 1 1 41.00 41 6 3 31 1
................................................................GGCAAGATGTCGGCATAGCTGT.......................................................................................................... 22 1 1 40.00 40 0 2 38 0
...............................................................TGCCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 39.00 39 8 7 17 7
...............................................................TGGCACGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 39.00 39 22 11 0 6
...............................................................TGGCAAGATGTCGGCATCGCT............................................................................................................ 21 1 1 37.00 37 1 2 33 1
...............................................................TGGTAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 37.00 37 28 5 2 2
...............................................................TGGCAAGATCTCGGCATAGCTG........................................................................................................... 22 1 1 36.00 36 15 4 13 4
..............................................................CTGGCAAGATGTCGGCATAGCT............................................................................................................ 22 1 1 36.00 36 8 11 7 10
.............................................................................................................CGCTATGCTGCATCTAGTC................................................................ 19 0 1 36.00 36 17 0 14 5
...............................................................TGGCAAGATGTCGGCATAGCTGATTT....................................................................................................... 26 2 1 34.00 34 8 10 3 13
...............................................................TGGCAAGATGTCGGCATAGCCG........................................................................................................... 22 1 1 34.00 34 7 13 7 7
...............................................................CGGCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 33.00 33 6 11 15 1
...............................................................TCGCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 33.00 33 1 8 22 2
...............................................................TGGCAAGATGTCGTCATAGCTG........................................................................................................... 22 1 1 32.00 32 1 7 19 5
..................................................................CAAGATGTCGGCATAGCTGA.......................................................................................................... 20 0 1 31.00 31 13 5 9 4
...............................................................TGCCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 30.00 30 2 9 13 6
...............................................................TGGCAAGATGTCGGCATAGCTGTAT........................................................................................................ 25 3 1 30.00 30 0 18 2 10
................................................................GGCAAGATGTCGGCATAGCTGAT......................................................................................................... 23 1 1 30.00 30 2 1 27 0
...............................................................TGGGAAGATGTCGGCATAGCTGA.......................................................................................................... 23 1 1 30.00 30 12 11 2 5
...............................................................TGGCAAGATGTCGGCATA............................................................................................................... 18 0 1 30.00 30 1 0 27 2
...............................................................TGGCAAGATGTCGGCAAAGCTGA.......................................................................................................... 23 1 1 30.00 30 27 1 0 2
...............................................................TGACAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 29.00 29 3 5 18 3
...............................................................TGGCAAGATGTCGGCATCGCTG........................................................................................................... 22 1 1 29.00 29 2 5 21 1
...............................................................TGGCAAGATTTCGGCATAGCT............................................................................................................ 21 1 1 29.00 29 1 7 19 2
................................................................TGGCAGATGTCGGCATAGCTGA.......................................................................................................... 22 3 2 28.50 57 50 4 1 2
...............................................................TGGCAAAATGTCGGCATAGCTG........................................................................................................... 22 1 1 27.00 27 2 4 8 13
...............................................................AGGCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 26.00 26 0 7 16 3
...............................................................TGGCAAGATGTCGCCATAGCTG........................................................................................................... 22 1 1 26.00 26 2 8 13 3
...............................................................TCGCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 26.00 26 1 7 14 4
...............................................................TGGCAAGATGTCGGCACAGCTG........................................................................................................... 22 1 1 25.00 25 6 11 5 3
...............................................................CGGCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 25.00 25 4 9 10 2
...............................................................TGGCAAGGTGTCGGCATAGCTG........................................................................................................... 22 1 1 25.00 25 6 13 2 4
...............................................................TGGCAAGATGTCGGCTTAGCTG........................................................................................................... 22 1 1 24.00 24 4 1 18 1
...............................................................TGGCAAGAGGTCGGCATAGCTGA.......................................................................................................... 23 1 1 24.00 24 18 4 0 2
...............................................................TGGCAAGATGTCGGCATAGCTGTA......................................................................................................... 24 2 1 24.00 24 1 12 5 6
...............................................................TGGCAAGATGTCGGCATAGCAGA.......................................................................................................... 23 1 1 24.00 24 9 5 2 8
................................................................GGCAAGATGTCGGCATAGCTGAA......................................................................................................... 23 1 1 23.00 23 0 0 23 0
................................................................TCCAAGATGTCGGCATAGCTGA.......................................................................................................... 22 2 1 23.00 23 12 4 0 7
...............................................................TGGCAAGATGTCGACATAGCTG........................................................................................................... 22 1 1 23.00 23 4 7 9 3
...............................................................TGGCAAGATGTCGGCATAGCTC........................................................................................................... 22 1 1 22.00 22 1 7 8 6
...............................................................TGGCAAGATCTCGGCATAGCT............................................................................................................ 21 1 1 21.00 21 0 12 4 5
...............................................................TGGCAAGATGTCGGCATAGCTGACA........................................................................................................ 25 1 1 21.00 21 12 4 1 4
.............................................................................................................CGCTATGCTGCATCTAGTCAGTT............................................................ 23 0 1 21.00 21 2 1 8 10
.................................................................TCAAGATGTCGGCATAGCTG........................................................................................................... 20 1 1 21.00 21 2 6 9 4
................................................................TGCAAGATGTCGGCATAGCT............................................................................................................ 20 1 1 20.00 20 1 4 15 0
...............................................................TGGCAAGATGTCGGCGTAGCTG........................................................................................................... 22 1 1 20.00 20 2 8 8 2
...............................................................TGGCAAGATGTCAGCATAGCTG........................................................................................................... 22 1 1 20.00 20 5 8 4 3
...............................................................TGGCCAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 20.00 20 5 10 3 2
...............................................................TGGCAAGATGTCGGAATAGCTGAC......................................................................................................... 24 1 2 19.50 39 21 9 7 2
...............................................................TGGCAAGATGTCGGCATAGGTGA.......................................................................................................... 23 1 1 19.00 19 9 4 5 1
..........................................................................................GAAAAGCGATTTTGAAGAG................................................................................... 19 0 1 19.00 19 13 2 2 2
...............................................................TGGCAAGATGTCTGCATAGCT............................................................................................................ 21 1 1 19.00 19 0 8 6 5
...............................................................TGGCAAGATGTCGGGATAGCTGA.......................................................................................................... 23 1 2 18.50 37 22 11 2 2
...............................................................TGGCAAGATGTCGGCCTAGCTG........................................................................................................... 22 1 1 18.00 18 3 13 1 1
...............................................................TGGCAAGATGACGGCATAGCT............................................................................................................ 21 1 1 18.00 18 1 2 13 2
...............................................................TGGCAAGACGTCGGCATAGCTG........................................................................................................... 22 1 1 18.00 18 5 7 5 1
...............................................................TGGCAAGATGTCGGCATAGCTGACT........................................................................................................ 25 1 1 18.00 18 8 4 1 5
...............................................................TGGCAAGATGTCGGCATAACTGAT......................................................................................................... 24 2 1 18.00 18 0 16 1 1
...............................................................TGGCAAGATGTCGTCATAGCT............................................................................................................ 21 1 1 18.00 18 0 3 12 3
...............................................................TGGCAAGATGTGGGCATAGCTGA.......................................................................................................... 23 1 1 18.00 18 10 4 2 2
...............................................................TGGCAAGATGTCCGCATAGCTG........................................................................................................... 22 1 1 18.00 18 2 11 2 3
...............................................................GGGCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 18.00 18 2 4 10 2
...............................................................GGGCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 17.00 17 0 4 11 2
...............................................................TGGCAAGATATCGGCATAGCTG........................................................................................................... 22 1 1 17.00 17 4 4 3 6
...............................................................TGGCAAGATGTCGGCATACCTGAT......................................................................................................... 24 2 1 17.00 17 2 12 1 2
...............................................................TGGCAAGATGACGGCATAGCTG........................................................................................................... 22 1 1 17.00 17 1 3 12 1
..............................................................TTGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 24 0 1 16.00 16 1 1 11 3
...............................................................TAGCAAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 16.00 16 1 5 7 3
...............................................................AGGCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 16.00 16 0 3 7 6
...............................................................TGGCAGGATGTCGGCATAGCTG........................................................................................................... 22 1 1 16.00 16 7 5 2 2
...............................................................TGGCAAGATGTCAGCATAGCT............................................................................................................ 21 1 1 16.00 16 0 7 5 4
...............................................................TGGCGAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 16.00 16 8 5 0 3
...............................................................TGGTAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 15.00 15 6 4 3 2
...............................................................TGGCAAGGTGTCGGCATAGCT............................................................................................................ 21 1 1 15.00 15 2 7 4 2
...............................................................TGGCAAGATGTCGGCATAGTT............................................................................................................ 21 1 1 15.00 15 1 6 4 4
...............................................................TGGCAAGATGTCGGCATAGCC............................................................................................................ 21 1 1 15.00 15 1 7 6 1
...............................................................TGGCAAGATGTCGGCATAGCGA........................................................................................................... 22 2 1 15.00 15 13 2 0 0
...................................................................AAGATGTCGGCATAGCTG........................................................................................................... 18 0 1 15.00 15 6 3 4 2
....................................................................AGATGTCGGCATAGCTGA.......................................................................................................... 18 0 1 15.00 15 10 1 2 2
..................................................................CAAGATGTCGGCATAGCTG........................................................................................................... 19 0 1 14.00 14 2 1 10 1
...............................................................TGGCATGATGTCGGCATAGCTG........................................................................................................... 22 1 1 14.00 14 4 0 8 2
.............................................................................................................CGCTATGCTGCATCTAGTCAGA............................................................. 22 1 1 13.00 13 2 1 8 2
...............................................................TGGCGAGATGTCGGCATAGCT............................................................................................................ 21 1 1 13.00 13 0 7 2 4
..............................................................GTGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 24 1 1 13.00 13 0 0 13 0
...............................................................TGGCAAGATGTCGGCATAGTTG........................................................................................................... 22 1 1 13.00 13 9 2 1 1
...............................................................TGGCAAGATGTCGGCATACCTT........................................................................................................... 22 2 1 13.00 13 0 12 0 1
...............................................................TGGCAAGATGTCGGTATAGCTG........................................................................................................... 22 1 2 13.00 26 8 4 11 3
...............................................................TGGCAAGTTGTCGGCATAGCTGA.......................................................................................................... 23 1 1 13.00 13 8 5 0 0
..................................................................CAAGATGTCGGCATAGCT............................................................................................................ 18 0 1 12.00 12 0 1 9 2
...............................................................TGGCAAGATGTCGGCGTAGCT............................................................................................................ 21 1 1 12.00 12 0 3 7 2
.................................................................TCAAGATGTCGGCATAGCT............................................................................................................ 19 1 1 12.00 12 0 5 5 2
...............................................................TGGCAACATGTCGGCATAGCTG........................................................................................................... 22 1 1 12.00 12 0 7 1 4
...............................................................TGGAAAGATGTCGGCATAGC............................................................................................................. 20 1 1 12.00 12 0 0 11 1
...............................................................TAGCAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 12.00 12 0 2 6 4
...............................................................TGGCAAGATGTCGGCATAGATG........................................................................................................... 22 1 1 12.00 12 1 6 2 3
...............................................................TGGCAAGATGCCGGCATAGCTGAT......................................................................................................... 24 2 1 12.00 12 4 2 1 5
...............................................................TGGCAAGATGTCGCCATAGCT............................................................................................................ 21 1 1 12.00 12 0 4 5 3
...............................................................TGGCAAGATGTCGGCATAGCAG........................................................................................................... 22 1 1 12.00 12 2 7 0 3
...............................................................TGGCAAGATGTCGGCATATCTGAT......................................................................................................... 24 2 1 11.00 11 0 10 1 0
...............................................................TGGCAAGATGTCGGCATAACTGT.......................................................................................................... 23 2 1 11.00 11 0 9 1 1
...............................................................TGGCAAGATGTCTGCATAGCTG........................................................................................................... 22 1 1 11.00 11 0 3 2 6
...............................................................TGGCAAGCTGTCGGCATAGCT............................................................................................................ 21 1 1 11.00 11 0 3 5 3
...............................................................TGGCAAGATGTCGGCGTAGCTGAT......................................................................................................... 24 2 1 11.00 11 3 5 0 3
..............................................................ATGGCAAGATGTCGGCATAGCTGA.......................................................................................................... 24 1 1 11.00 11 0 0 11 0
...............................................................TGGCAAGATGTCGGCATATCTGT.......................................................................................................... 23 2 1 11.00 11 0 10 1 0
..............................................................TTGGCAAGATGTCGGCATAGCTG........................................................................................................... 23 0 1 11.00 11 0 1 10 0
...............................................................TGGCAAGATGTCGGCATAACTT........................................................................................................... 22 2 1 11.00 11 0 11 0 0
...............................................................TGGCCAGATGTCGGCATAGCT............................................................................................................ 21 1 1 11.00 11 0 6 4 1
...............................................................TGGCAAGATGGCGGCATAGCTG........................................................................................................... 22 1 1 11.00 11 2 6 2 1
..............................................................CTGGCAAGATGTCGGCATAGC............................................................................................................. 21 1 1 10.00 10 2 2 5 1
...............................................................TGTCAAGATGTCGGCATAGCTGAT......................................................................................................... 24 2 1 10.00 10 2 1 4 3
...............................................................TGGCAAGATGTCGGCATACCTGAA......................................................................................................... 24 2 1 10.00 10 2 6 2 0
.............................................................................................................CGCTATGCTGCATCTAGTCATT............................................................. 22 1 1 10.00 10 1 0 7 2
...............................................................TGGCAAGATGTCGGCCTAGCT............................................................................................................ 21 1 1 10.00 10 0 8 0 2
...............................................................TGGCAAGATGGCGGCATAGCT............................................................................................................ 21 1 1 10.00 10 1 4 3 2
...............................................................TGGCAAGATGTCGGTATAGCT............................................................................................................ 21 1 2 9.50 19 5 4 6 4
...............................................................TGGCAAGATATCGGCATAGCT............................................................................................................ 21 1 1 9.00 9 2 5 1 1
...............................................................TGGCATGATGTCGGCATAGCT............................................................................................................ 21 1 1 9.00 9 1 1 7 0
...............................................................TGGCAGGATGTCGGCATAGCT............................................................................................................ 21 1 1 9.00 9 0 3 4 2
...............................................................TGTCAAGATGTCGGCATAGC............................................................................................................. 20 1 1 9.00 9 0 1 7 1
................................................................GGCAAGATGTCGGCATAGCTTA.......................................................................................................... 22 1 1 9.00 9 0 0 9 0
...............................................................TGGCAAGATGTCGGCATAGAT............................................................................................................ 21 1 1 9.00 9 0 4 3 2
..............................................................CTGGCAAGATGTCGGCATAGCTGAT......................................................................................................... 25 2 1 9.00 9 5 3 0 1
...............................................................TGGCAAGATGTCGGCACAGCT............................................................................................................ 21 1 1 9.00 9 2 4 2 1
.................................................................GCAAGATGTCGGCATAGC............................................................................................................. 18 0 1 9.00 9 1 0 6 2
...............................................................TTGCAAGATGTCGGCATAGCTGT.......................................................................................................... 23 2 1 9.00 9 1 2 5 1
.............................................................................................................CTCTATGCTGCATCTAGTCAGT............................................................. 22 1 1 9.00 9 0 0 8 1
...............................................................TGGCAAGATGTCGGCATAT.............................................................................................................. 19 1 1 9.00 9 0 0 8 1
...............................................................TGGCAAGATGTCGGCATAGCTGAG......................................................................................................... 24 1 2 9.00 18 3 8 7 0
...............................................................TGGCAAGATGTCGGCATAGCAA........................................................................................................... 22 2 1 9.00 9 0 4 3 2
...............................................................TGGCAAGATGTCGGCATACCTGT.......................................................................................................... 23 2 1 9.00 9 1 7 1 0
...............................................................TGGTAAGATGTCGGCATAGCTGAT......................................................................................................... 24 2 1 9.00 9 7 0 0 2
..............................................................GTGGCAAGATGTCGGCATAGCTG........................................................................................................... 23 1 1 9.00 9 0 0 9 0
...............................................................TGGCAAGACGTCGGCATAGCT............................................................................................................ 21 1 1 9.00 9 0 3 4 2
...............................................................TGGCAAGATGTCGGGATAGCT............................................................................................................ 21 1 2 8.50 17 1 13 2 1
...............................................................TGGCAAGATGTCAGCATAGCTGAT......................................................................................................... 24 2 1 8.00 8 1 3 1 3
...............................................................TGGCAAGGTGTCGGCATAGCTGAT......................................................................................................... 24 2 1 8.00 8 3 3 0 2
...............................................................TGGAAAGATGTCGGCATAGCTT........................................................................................................... 22 2 1 8.00 8 0 0 7 1
...............................................................TGGCAAGATGTCCGCATAGCT............................................................................................................ 21 1 1 8.00 8 0 5 0 3
...............................................................TGGCAAAATGTCGGCATAGCT............................................................................................................ 21 1 1 8.00 8 0 0 3 5
...............................................................TGGCAAGATGTCGGCATAGCTTTT......................................................................................................... 24 3 1 8.00 8 0 3 4 1
..............................................................GTGGCAAGATGTCGGCATAGCT............................................................................................................ 22 1 1 8.00 8 0 0 8 0
...............................................................TGGCAAGATGTCGACATAGCT............................................................................................................ 21 1 1 8.00 8 0 1 5 2
...............................................................TGGCAAGCTGTCGGCATAGCTG........................................................................................................... 22 1 1 8.00 8 1 3 2 2
...............................................................TGGCAAGATGTCGGCATAGCTACC......................................................................................................... 24 2 1 8.00 8 0 8 0 0
...............................................................TGGCAAGATGTTGGCATAGC............................................................................................................. 20 1 1 8.00 8 1 0 7 0
...............................................................TGGCAAGATGTCGGCATAGCTGATA........................................................................................................ 25 2 2 8.00 16 2 13 0 1
...............................................................TGGCAAGATGTCGGCATAGCTGCT......................................................................................................... 24 2 1 7.00 7 0 4 0 3
................................................................GGCAAGATGTAGGCATAGCT............................................................................................................ 20 1 1 7.00 7 0 0 7 0
...............................................................TGGCAAGATGTCGGCAGAGCTG........................................................................................................... 22 1 1 7.00 7 0 0 7 0
...............................................................TTGCAAGATGTCGGCATAG.............................................................................................................. 19 1 1 7.00 7 0 1 6 0
...............................................................TCTCAAGATGTCGGCATAGCTGA.......................................................................................................... 23 2 1 7.00 7 5 2 0 0
...............................................................TGGCAAGATGTCGGCATAA.............................................................................................................. 19 1 1 7.00 7 0 2 5 0
...............................................................TGGCAAGATGTCGGCATAGCTAT.......................................................................................................... 23 2 1 7.00 7 1 3 3 0
...............................................................TGGCAAGATTTCGGCATAG.............................................................................................................. 19 1 1 7.00 7 0 0 7 0
...............................................................TGGCAAGATTTCGGCATAGCTGAT......................................................................................................... 24 2 1 7.00 7 0 0 3 4
...............................................................TGGCAAGATGTCGGCTTAGCT............................................................................................................ 21 1 1 7.00 7 0 0 7 0
...............................................................TGGCAAGATGTAGGCATAGCTG........................................................................................................... 22 1 1 7.00 7 1 3 0 3
...............................................................TGGCAAGATGTCGGCATGGCTG........................................................................................................... 22 1 1 7.00 7 5 1 1 0
...............................................................TGGCAAGATGTCGGCATATCTT........................................................................................................... 22 2 1 7.00 7 0 6 1 0
...............................................................TGACAAGATGTCGGCATAGCT............................................................................................................ 21 1 1 7.00 7 0 2 2 3
................................................................GTCAAGATGTCGGCATAGCTGA.......................................................................................................... 22 1 1 7.00 7 0 0 7 0
..............................................................ATGGCAAGATGTCGGCATAGCT............................................................................................................ 22 1 1 7.00 7 0 0 7 0
...............................................................TGGCAAGATGTAGGCATAGCT............................................................................................................ 21 1 1 7.00 7 0 0 3 4
...............................................................TGGCAAGATGTCGGCATTGCTG........................................................................................................... 22 1 1 7.00 7 1 4 2 0
...............................................................TTGCAAGATGTCGGCATAGCTT........................................................................................................... 22 2 1 7.00 7 0 2 5 0
...............................................................TGGCAAGATGTCGGCATAGCTGTTTT....................................................................................................... 26 3 1 7.00 7 0 3 2 2
...............................................................TGGCAAGATGTCGGCCTAGCTGAT......................................................................................................... 24 2 1 6.00 6 0 5 0 1
...............................................................TGGCACGATGTCGGCATAGCT............................................................................................................ 21 1 1 6.00 6 0 2 2 2
................................................................TCCAAGATGTCGGCATAGCTG........................................................................................................... 21 2 1 6.00 6 0 4 0 2
...............................................................TGGCAAGATGTCGGCATAGCTGTTAT....................................................................................................... 26 3 1 6.00 6 0 2 0 4
...............................................................TGGCAAGATTTCGGCATAGCTT........................................................................................................... 22 2 1 6.00 6 0 1 5 0
...............................................................TGGCAAGATGTCGGCACATCT............................................................................................................ 21 2 1 6.00 6 0 0 6 0
................................................................GGCAAGATGTCGGCATAGCTA........................................................................................................... 21 1 1 6.00 6 0 0 6 0
...............................................................TGGCAAGATGTCGGCATAGCCGAT......................................................................................................... 24 2 1 6.00 6 2 2 0 2
...............................................................TGGCAAGATGTCTGCATAGCTGAT......................................................................................................... 24 2 1 6.00 6 1 2 0 3
................................................................GGCAAGATGTCGGCATAGCTGTT......................................................................................................... 23 2 1 6.00 6 0 1 5 0
.............................................................................................................CGCTACGCTGCATCTAGTCAGT............................................................. 22 1 1 6.00 6 4 0 2 0
...............................................................TGGCAAGATGCCGGCATAGCTGT.......................................................................................................... 23 2 1 6.00 6 0 3 2 1
..............................................................CTGGCAAGATGTCGGCATAGCTGAA......................................................................................................... 25 2 1 6.00 6 1 2 1 2
...............................................................TGGCAAGATGTTGGCATAGCTGAT......................................................................................................... 24 2 1 6.00 6 3 2 1 0
................................................................CGCAAGATGTCGGCATAGCTGA.......................................................................................................... 22 1 1 6.00 6 2 2 2 0
...............................................................TGGCTAGATGTCGGCATAGCTG........................................................................................................... 22 1 1 6.00 6 4 1 1 0

Anti-sense strand reads

CTTGGTTTAGCCAACCACAAAGCCGGTAGATGCTAGCTAGCATATCGTGGAGGCAACCATTTAACCGTTCTACAGCCGTATCGACTGCAACTTTTCGCTAAAACTTCTCGCGATACGACGTAGATCAGTCAACAAGTTACCTTGTCAGTCGCTCTAGCTTGTTTTGTCATCACCTCAAAATTCGAGGTAACA

**********************************************..((((((((..(((((((.(((((.(((((((((.....((.((((....)))).))....)))))))))))))).)))))))..))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total V114

embryo
.................CAAAGCGGGTAGATGGTA............................................................................................................................................................. 18 2 4 0.25 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1:11168723-11168914 - dse-mir-31a Known_mirbase GAA-CCAAATCGGT---------TGGTGTTTCG-------------------------------------GCC----AT----CTACGA--------------------TCGATCGTATAG-C-A---CCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CAAAACAGTAGTGG-AGTTTTAAGCTCCATTGT
droSim2 2r:14362227-14362418 - dsi-mir-31a Known_mirbase GAA-CCAAATCGGT---------TGGGGTTTCG-------------------------------------GCC----AT----CTACGA--------------------TCGATCGTATAG-C-A---CCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CAAAACAGTAGTGG-AGTTTTAAGCTCCATCGT
dm3 chr2R:13671250-13671441 - dme-mir-31a Known_mirbase GAA-CCAAAACGGT---------TGGGGTTTCG-------------------------------------TCC----AT----GTCGGA--------------------TCGATCGTATAT-C-A---ACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CAGAACAGTAGTGG-AGTTTTAAGCTCCATCGT
droEre2 scaffold_4845:7899156-7899338 - der-mir-31a Known_mirbase GGT-CCAAATCGGT---------TTGGTTTTG-------------------------------------AGCC----AT----GTCGGA--------------------TCGATCGTATAG-C-A---CCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGC-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CACAATAGTTGTGA-AGTTTAAAT---------
droYak3 2R:15511972-15512157 + dya-mir-31a Known_mirbase CGG-CCAAATCGGT---------TTGGGTTTG-------------------------------------AGCC----AT----GTCGGC--------------------TCGATCGTATAG-C-A---CCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACACTCAGCGAGAT---CGAA---CCGAACAATAGTAA-AGTTTAAA------TCGT
droEug1 scf7180000409672:1435451-1435613 + GTG-CGAACTTGGT---------T----T------------------------------------TTCGAGTT----AT----GTCAGA--------------------TCGATCGTATAC-CCCAAAAATCTATTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAA---TA-------------------------------
droBia1 scf7180000301754:2904238-2904423 + GCA-AG--CTCTTT---------T----T-----------------------------------TTTGCAGTCATGTCTATAAGTCGAA--------------------TCGGTCGTATAG-C-CACGCTTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-ATTT-TAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAAAGACAAGACAGTATTAA-AG----------------
droTak1 scf7180000415313:18581-18767 + GAG-CGAACTCTGT---------TT---T-----------------------------------TTTGGAGCTATGTATATTTGTCGAA--------------------TCGATCGTATAG-C-CCCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-ACTT-TAGGAACGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCATCAAGAT---CGAA---AA----------------TATAGGCATAATTTA
droEle1 scf7180000491214:575157-575360 + GTG-CGAACTCGAT---------T----G------------------------------------TTGGAGTTTTGTATGTTTGTATGA--------------------TTGATCGTTAAAGC-CTCACATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CAAAAG-CAAACCACTAAAAAAACTGTTAAAATACATAAT
droRho1 scf7180000777956:117269-117431 + GTG-CGAACTCGGC---------T-----------------------------------------TTGGAGTTTTGTAT----GTTGGA--------------------TCGATCGTTTTAGC--CCAAATCAGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGCTCAAT-TGAATAGTCATCGAGAT---CGAA------------------------------------
droFic1 scf7180000453948:1777258-1777439 + GTG-CGAACTCGGT---------T----T------------------------------------TTGGAGCT----AT----TCTGAA--------------------GCGATCGTAT-------CGAATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACATGAT---CAAG----AAACCAGCAGC-----TTTAAAAATACTTTGG
droKik1 scf7180000302385:435219-435401 - GTGGCAAACTTGCT---------T-----------------------------------------TCGGTGTTATGT-------CTTGGGCTCTACAGGCCGGGCACATTCGATCATGGAT-C-ATGGATTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTT-GTAGAGCGCTATGCTGCATCTAGTCAGT-TATTCAACAGGAACAGTCAACGAGAT---CAAA------------------------------------
droAna3 scaffold_13266:10515567-10515720 + dan-mir-31a Known_mirbase GAA-CG----CGGT---------TCGGT------------------------------------------AGC----AG----ATTGGA--------------------GCGATCATATAG-C-CAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT-TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAA------------------------------------
droBip1 scf7180000396428:937231-937387 + GTG-CGAACGCGGT---------TCGG------------------------------------------AAGC----AG----TTTGGA--------------------GCGATCATATAG-C-ACAGAATCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT-G-AGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAA------------------------------------
dp5 3:16483202-16483335 - dps-mir-31a Known_mirbase CGT-CG--C--------------------------------------------------------------GC----GT----CTCGG------------------------ATCGT-------ACCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT-TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAAC-AGAT---CGA-------------------------------------
droPer2 scaffold_4:278975-279108 + dpe-mir-31a Known_mirbase CGT-CG--C--------------------------------------------------------------GC----GT----CTCGG------------------------ATCGT-------ACCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT-TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAAC-AGAT---CGA-------------------------------------
droWil2 scf2_1100000004513:4557854-4558014 - dwi-mir-31a Known_mirbase GAA-TGTA--TATT---------TTGTGTCTCT-------------------------------------TTT----TT----TTTTGAGCA-----------------TC-ATCAT-TAT-------CATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAAT-------AT-TTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAAT-AGAGCAATCGACAATATTATCTAA---CGAAA----------------------------
droVir3 scaffold_12875:16937640-16937809 - dvi-mir-31a Known_mirbase AA--CAAAATTTGCTAGCAACATT----T------------------------------------TTGTCGCGTTGTTT--------AT--------------------CCCGTCG------C-CTCGCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATTT-TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAATCAACAAAA----------------CAAT-------GTTTCAAT---------
droMoj3 scaffold_6496:11065405-11065571 + dmo-mir-31a Known_mirbase GAA-GTTGTTTAAT---------TTGTGTTTCAAATATATATATCATCTATATTTATAAATA----------------T----TTCGG--------------------------TT--T-----ATCGCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGC-AT-T-GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAAC------------------------------------------------
droGri2 scaffold_15245:16476664-16476805 - dgr-mir-31a Known_mirbase GGT-TCAACTA---------------------------------------------CAAACGTTTCT--CGTT---------------A--------------------TCTCTCGCGATT-----CTCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATCT-T-ATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACACTCAAC------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GAA-CCAAATCGGT---------TGGTGTTTCG-------------------------------------GCC----AT----CTACGA--------------------TCGATCGTATAG-C-A---CCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CAAAACAGTAGTGG-AGTTTTAAGCTCCATTGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231177564.0017756410752546518695125210
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22127735.00277359792885848994186
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21118625.0018625749470228673242
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2414111.0041113501928849984
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2212128.00212861210443469
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2011931.0019311052467129283
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2311921.001921392966119444
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2411801.001801266796414325
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................2211662.001662638122684218
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1911127.00112764722380177
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2211001.001001868467116
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................211902.00902889904
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201684.00684673911
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................271550.00550206039575
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241376.00376482029117
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251293.00293271383098
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................251272.00272176613653
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241262.00262205613056
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211222.0022217311830
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................231194.00194134711816
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211159.001593771249
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231152.0015220397122
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211123.0012355233411
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................251120.001207541544
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................252116.50233391093847
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231108.001085534217
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................19199.00996225813
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................22191.009119381618
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGT..................................................................................................................26190.0090246519
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................19176.007676000
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20173.00732534014
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................18167.006767000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21165.006565000
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20165.006560410
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20159.00592610716
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25155.0055633016
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20151.0051162708
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19150.005047210
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................21149.004947101
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22149.0049424021
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21148.004841061
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22140.004038200
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19136.0036140175
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20131.003195134
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................25130.0030218010
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23130.003027120
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18130.003027012
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................24124.002451216
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23123.002323000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22122.00228716
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACA...................................................................................................................25121.002114124
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23121.002181210
...........................................................................................................................................................................GAAAAGCGA-TTTT-GAAGAG............................................................................................19119.001922132
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25118.00181485
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24116.001611113
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................21115.00156711
................................................................................................................................................TGGCAAGATGTCGGCATAGCGA......................................................................................................................22115.001502130
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18115.00154362
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18115.001521102
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19114.001410121
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................22113.00138122
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18112.00129102
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................23111.001110100
..................................................................................................................................................GCAAGATGTCGGCATAGC........................................................................................................................1819.0096012
................................................................................................................................................TGGCAAGATGTCGGCATAT.........................................................................................................................1919.0098001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................2429.00187830
................................................................................................................................................TGGCAAGATGTCGGCATAGCAA......................................................................................................................2219.0093402
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................2418.0084301
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................2528.001601321
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................2417.0070403
................................................................................................................................................TGGCAAGATGTCGGCATAA.........................................................................................................................1917.0075200
................................................................................................................................................TGGCAAGATGTCGGCATAGCTAT.....................................................................................................................2317.0073310
.................................................................................................................................................GGCAAGATGTCGGCATAGCTA......................................................................................................................2116.0066000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGTT....................................................................................................................2316.0065100
droSim2
GAA-CCAAATCGGT---------TGGGGTTTCG-------------------------------------GCC----AT----CTACGA--------------------TCGATCGTATAG-C-A---CCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CAAAACAGTAGTGG-AGTTTTAAGCTCCATCGTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231141241.0014124123939284023852114008518411932103251351113943951665528910921672161149
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................221102504.00102504243442495518674143457687263046951121776819351149227192372312081378
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21160662.006066216774152241780104351886459437181520404177285114757111991301367
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................20121566.002156671196156359310885211809191129734313152712614784
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................23119276.00192763744596594612001141078001000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2414340.004340322536176690011561343300199101818275116
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................2113456.0034561911135218400022003010010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2313409.0034096205701134000614614331844881224908431
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2413093.0030935305911723600752689312787809369440
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................1812383.00238337380195112857150145001002
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2211824.0018243683821654002382694470484317239
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1911726.0017262733388872217255169166995349521110
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231934.00934304232283200542259002201
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................252822.501645386616120041464626015618643123
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................211802.008022934425050033003012000
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................191704.0070447389300041005031800000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................221661.006611142430161712310137307419400000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241611.006111901419200637260212595014
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211458.004581721521170033430331526002
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211310.00310745016170010209500010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................221308.003085757850030353591221444000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................221259.0025940216182000500139002026
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................181238.00238434178000100174000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................211227.002273624259111000031103041
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251215.002157555164003124006111010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241206.0020638331723351930071300000
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................201206.00206514383400510019000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................251192.001927977810095007012003
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201187.001872919010004110030001029
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................251180.0018087435482550011000001
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................181149.00149211330300000082000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................241133.00133513680001670130110000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAAA..................................................................................................................262112.50225120300547259304000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................23196.009635060041110111250011
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20195.0095312911001516002000000
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19179.00794123650002001010000
....................................................................................................................................................AAGATGTCGGCATAGCT.......................................................................................................................17177.0077000000000077000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25160.00604800002181000216000
..................................................................................................................................................GCAAGATGTCGGCATAGCTGG.....................................................................................................................21155.00551183500000000100000
.....................................................................................................................................................AGATGTCGGCATAGCTG......................................................................................................................17152.0052000000000052000000
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18149.00492654300010010000000
................................................................................................................................................TGGCAAGATGTCGGC.............................................................................................................................15148.0048000000110046000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22145.00451612200082002111000
................................................................................................................................................TGGCAAGATGTCGGCA............................................................................................................................16140.0040000000251032000000
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20139.0039871080012001100001
......................................................................................................................................................GATGTCGGCATAGCTG......................................................................................................................16136.0036000000000036000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................22135.0035810000147200300000
.....................................................................................................................................................AGATGTCGGCATAGCT.......................................................................................................................16134.0034000000300031000000
....................................................................................................................................................AAGATGTCGGCATAGCTGG.....................................................................................................................19131.0031912000000001000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGG.....................................................................................................................22131.0031961600000000000000
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19130.0030116620010103000000
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................19130.0030530125300001000001
...................................................................................................................................................CAAGATGTCGGCATAGCTGG.....................................................................................................................20128.0028262000000000000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23127.00272100001210100100000
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20127.002757210046000011000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................21125.002540093400101210000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................25124.002476000041000015000
.....................................................................................................................................................AGATGTCGGCATAGCTGG.....................................................................................................................18123.0023431600000000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGAC.......................................................................................................................21121.0021147000000000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................25220.50417410001513000100000
................................................................................................................................................TGGCAAGATGTCGGCAT...........................................................................................................................17120.0020000000262010000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20119.001900006613003000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................27118.0018000200000051100000
................................................................................................................................................TGGCAAGATGTCGGCATAGG........................................................................................................................20118.001859310000000000000
......................................................................................................................................................GATGTCGGCATAGCTGA.....................................................................................................................17118.0018000000010017000000
..................................................................................................................................................GCAAGATGTCGGCATAGC........................................................................................................................18117.001783400101000000000
....................................................................................................................................................AAGATGTCGGCATAGCTGAA....................................................................................................................20116.0016021000000013000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23116.001652350000000000001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................24116.001664000020000202000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21115.001531050000000015000
................................................................................................................................................TGGCAAGATGTCGGCATT..........................................................................................................................18214.50291510010002001000000
....................................................................................................................................................AAGATGTCGGCATAGCTGAT....................................................................................................................20114.0014000000000014000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................23113.001322100000000800000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-A....................................................................23112.001200010045110000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................24212.0024311100016000000002
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................18111.001131041200000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAC...................................................................................................................25111.001113300012001000000
......................................................................................................................................................GATGTCGGCATAGCT.......................................................................................................................15110.0010000000000010000000
....................................................................................................................................................AAGATGTCGGCATAGC........................................................................................................................16110.001000000000019000000
dm3
GAA-CCAAAACGGT---------TGGGGTTTCG-------------------------------------TCC----AT----GTCGGA--------------------TCGATCGTATAT-C-A---ACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CAGAACAGTAGTGG-AGTTTTAAGCTCCATCGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................2311880381.001880381000038160036532581621100234048377313602312224421006760220259834262055324615454406923916893194916962057100326711575247626721038058028260730000000000000000055233953137898079421222206301822041777457021218876748366960713351161146811971453593261338470551133276396409632342267328393323470000253826361190694361664462691831199313112682742500191545164319981067100001911263210383713082810275186945107727498980710380421251235973818971413424521762140298222716701740225622246193489250248361557146114122229692150495113561354223218931062728741620520020066977001072511413537153096572898195865272120362345416732542521514817118186348223104571871240160103820466036437724945391803467586315125752532222988104141366390068614792314354032383228208873129491259442026113334055723106794423924851516146736978946508374373621112323802591189187988290811185287851101730756471172141376271009061481951796829186
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................221450923.00450923000049210117871611190614020100250414115261866272667550436363010107468214991104681524233794515446400733591126182627900090016857000000000000000002071663302412186151171056011939181255368111675515478381258875429124511594831182301752954623543836741272911539183074537134200005641124023728332175171959285333220488228356696266000001100112193476100706175997263384931318667117912040019764076892554774449129235213955382034750611117123514107230247611132094117985649641450601281937598807100025130035653801271713784332131133705498035173313112145159861172610271078746142390184952961185793567303781648132614155826448074553596418876317917648944399963125341112659262210491767415123488462250119106642749712728296323424220476037913422105461279081531304312167118461941764120
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................211277299.0027729900006939003257710024101240122364941401171161780364301131439456149826039499155812484725529517150262085629610200020463741140000000000000000010001464803223059288420230896986158514142620390612126117694411657111101586857146371580222169411156829343833729638500101802802476745434150045830611297126155377165000001200210056578607141143771120862174590925253006014242852743237745220101771521953157301000616893111237308153411369974551736324293659118454516390001103005537180776103915092875580083623461119444362173498341010496046101275999817101091020201617784561364343222842338224813603661549260516483582601190662201585540065796617249800125957991431857620622988902113911044747811636680490607896866921311026
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................24185646.00856460000430002011020010012260002100000000103907511763114017325807289341336411291490000000000000000000000001003201300023419510484394312734848303069676922123175019017411911153222500000300305074412911363119472893677078580000000000021350400042551661330633306101334553251988800105976225100002204150107200001370329755672923522138101700004149001211300130250511129817502069201257250001423011035101981496391229833229091701522010137779438056463888281450818763879027676002098131712552105804201358435998513356312135663436017543534965047527450926134320
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAATC..................................................................................................................26156736.005673600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703129702000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................23132877.0032877000030000001001001008140500100000000276026843310311361439337920103467731190000000000000000000000000007106110008540435456309611213771240021516535003545446014010156722332733000000301071110624447423096817234116000000010002834055003448186215040100010972063015833004554181153000006872002300000129965222382661112615210000111400765107020180401761302109631041811000010112831001129072371297144142089549100124606505374501728038020077392241732187602500210234740124821611424230151504282001173215858861653181017668170114
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................24124908.002490800003100000000000000319000000000000027352527959319323419112122234417000000000000000000000000001203181430034856432303822151330600300244450120141216052157181105000024748050401833502148169731316182000000000000182502700203704202323320000080171231903601145224482191657744001200000776782053061625222832532614000064740098890514400005041057040031360000212300332009992920112131951472705870010030443729028811491438726478232200688200685385398239101105701615221122221806121030928783475643766848100200
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................22124265.00242650000000002000010011061502001100000000171620252373358855141012211640960000000000000000000000011004401000020119016112910033310202014400001245621211014183713034640000000000000201311228251375343136000000110000435305201543824906308651400101361063415517200401160830000053670161000004532114233534114301000055001280841676000731040560100161200101032123000906801578021291022434250000156538147272048482442341312737313540166106994250133909130100003503922181963153681463510461209000002
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................20119396.0019396000031000210202001105182133000112834220113950493740769249136622321122601289800011212510000000000000000001008300300041126113636471074641508113000061612351534121113901704319641391041550020001000602106328543752117983138400000000000408003801205239523213270000078701866600022060180000086003100000725562512355441323330000860013311011891202116010301053600044500006121164300432742213293656301741000319519126526142943011911725613542862219320222827100134211184000035302311027621381445872738841111000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATC...................................................................................................................25113343.00133430000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050020000000000000000000000000000000000020000000000000000000000000100000000000000616970770000000000020010000000000000000000000100000400000043215130115000030000030000000000061076556000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................22111186.00111860000310041210301000001901300051313472800016292617171330968204318122036473690001311100000000000000000000241001661972001615431671182812786448510370020029580420151632301511031129511190000000020731861418343225117451316173300000000000847508065453714501485261854800000232611817200029011600000161300000000012812951251548275149208103834372300300002302000453333401255801154300316501123040816480181405723491288965125410012807277786233333242018571271023360252600541779001204002120404231491824001200
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................2318801.00880100001000010000000000130000000000000132776115116327912221549131968085261000000000000000000000000000000041000001100216301001110000000210022211019503901110590254292000000000304013486853141121019120000000000071101500031101020000003401720012015500000360000000011525502500000001000037004835020961030753101202015414000010100100001735614206265939141000003525258065180928015643613779033866570035314000135480100001600260415177836252003001
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1918344.008344000000000000006000002124340000434453110112723913411397291183191627173000857920000000000000000000009400000033171440443077111981361200003882512543119151909515046153332000000000010020910524162047400000000004517205221446435346106341700001325522571500020047180000089003000020299369781023021000003500383902953201023370320000025100003010200100192342316260503151230100017519018426137510275317132903380189012014100111132310001010012515233389129162165205001000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................2516675.00667500000000000000000000010000000000000311862118034501345110000000000000000000000000001000000010100120300000000000100000005140701012030030000000000000005034011253470000000000015070056062506100000910325700080293000006800000000011116830005300110000450032082010003425012110009300100000000000087711139171517970100052466743018432014405118141157820145921018731200000063001534736629272554641485100000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................2415753.00575300000000000000000000020000000000000664400520145316414920000000000000000000000000001000000000320075140013820000000000040213031132105063000000000000000985522073043000000000002703007811119010100000213712660111114921000001013000000000212042367012212000000450014045410002115080000024000000000100100191343124327273510000000105139122114232419106333974014210902171080008032400010001013347402310142206301282000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................2413072.0030720000000000110000000032100010000000094772026033307222200015736300000000000000000000001000000000301112100004000000110021203301000501012000000000020060141318215300000000000011030095060201100000176195000402101000045000000000356158001201000000814001815081300006901230000140000100000100006791410321122556000003038492181344924182727611643520643200136130110000220049411211182140105103000030
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................2512979.00297900000000000000000000000000000000000065520111310222022100000000000000000000000000000000000000000402000030000002000000022000246000010000010000000020321052610300000000000030300260101070000001071430003098010031400000000085711181103030100001852510034011010001580711010430000000000000004231049105274100000241627181797212226012363005632000328410000032011188323218118197190199000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................2312914.0029140000010000000000000000000000000000031622722098231161110713150000000000000000000000000001002400011250140100331400000131420231115013023603013000001101001100112002832100000000001077080021020203000000102313100050230000011400100000020663533100001000000000019250448000017120121001369100000100000000656136920981141000101716201616192566412411560173941067470013986200010480341129712578108167102001000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................2512585.00258500000000000000000000000000001000000866742122300032821000234620000000000000000000000200000000300100200100000000000000001100010500010000000000000000143401253302000000000000002003000100000000033020500050216000004300003000011738701020001000000009805110100310052200012000100000000000558136515534190000114261153125332512155209381103620005168631102030012177208113104256258164001000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2212123.0021230000000000000000000010000000000000033101211021311120500005000000000000000000000000002000000000000000000000000000000105050431716063000000000020100052344463400000000000076016005101906023000000303111101000650000052000300000464102200111000000000008110210000510001000160000000001000003313555667131501000610657156321413111041726180341600045116311110520058911412063107148102000002
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................1911791.0017910000000000000000000066000010000000000002242022521343200000000000000000000000000000000000000000000000000000000000000000010000000000000000000401005121012327700500000000000000010000110010000000045928300010016580014096002000100472381072410000010000000000161802000002000000002000000000100000151045177372210000073231661515820112101201190001220000000000202217147292015000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................2521585.003170000000010000000000000000000000000001513510162112323043000000000000000000000000000001043000002100556011200000001200105120000135020130000010100001926374311562115000000000004201003416030400000052311740008122010000242600000000012115213020016202000043007708700007503000011800000100000000017148271091413955900000354937254469442313232196248733087360001381750100104404013714311911511175115000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................2111369.001369000021000000000001000200000000000000133103914111212000000000000000000000000000002000000010121092701021400000110000106201011306036000000000000000311022710100000000000065050012080801100000021223100010430000000000000000461880003100000002100100810000067050000040000000000000002438224653100000035344848025704851121539039250011248100000010011161127934354161000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................2211296.0012960000120005012020001000010000000000004111143011211371300000000000000000000000000020001000202400122002251000001003015022010029020120000000000300003401155140200000000000270300361204040000001182800001001010000088000000000223173301010000000040270063021100104302100003000000000000000854362447222000001513252731111911016131224290331900020370000100100244764636353036000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................2511235.001235000000000000000000000000000000000000001201004231101400000000000000000000000001000000000000310002200000000000020001001101010501013000000000010000511122910020000000000001020012041300000000914070000201280000023001000000348211100110000000110000011200004203000004000000000000000531841877311000003547423700742106175231704822000134900000000010721045427495153000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231942.009420000000000000000000001000000000000034020101001020220000000000000000000000000000010000000000000304000071000000000000013201001604043000000000000000311112100100000000000042040034060704000000215120000002000000010000000001831001011101000010000203140000990500000110000000000000042242312801200000232230420421018410242602914000727000000000008886671493944000000
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211822.008220000000000000000000002000000000000010110201000100201230001000000000000000000000000000000000000010000000000000000000001000000000000000000000020000010004800000000000000000040000010000000000050400002030000002100000000011047000000000000000012800000001000000005000000000000000231720192262101000047546379400151120730001800000010000211223116493438000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................271717.00717000000000000000000000200000000000001813100300101324240002400000000000000000000000002500000000010100000000000000100000300010101000000000000000000420506320220000000000010010003020100000000000110000005200000400000000004137810310004000000006702120000118021001060000000000100000206014010000018212634785122520090000070000022021375385389747200014
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................221633.00633000000000000000000000000000000000000102011200010101202000000000000000000000000000000000000002000010000010000300000000410100020400200000000000000011301320011000000000002204004003100100000081020010107300000100000000002351300000000000026120024004000022020000000000000000010008532413564220000037691146601113515926022900021000000000000814961587000000
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................201625.0062500000000000000000000010000000000000323000030215112130000000000000000000000000000000020000000000000000000000000000000000000000000000000001203010044441124818300000000000110000000000000000000192801008061700000030011000004262013100011100000000078010000000010000010000000000000005283102160600000031431974131204205500039000000000001626177212219000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................251599.005990000000000000000000000000000000000012000000200001100000000000000000000000000000000000000000100000000000000000000000001000011000000000000000000002110011200000000000000000100010100000000001102000000200000001000000000152300000000000099000000500001401000004000000000000000061102160800000982017000101542915012500052500000000000501146116233240000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211581.00581000010010000000000000001000717000000021001110000001010000350000000000000000000000200020003152119513001243200000000400152101902001120211000000000000000020010111002000000000002218012288419361019815320000011002000000100000000000000000010002210868430000000011012000031104100001000000000000000110112020000020580203340000100000033000000000010691131000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................211574.00574000000000000000000000100000000000003010000000001010010001120000000000000000000000000000000000000000000000000000001000220100110002410000000000000000221133100200000000000950800320803014000000100092000108000000100000000001987000100000000000020001000000000000000000000000000008905326232170000015130157232112182012400013190000000000016158810168000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................211562.005620000100000010010000001010000000000020010102000001220000000000000000000000000000010000000201100302000222001001000004010000001010120000000000000002020115200000000000100170400120301040000001740310003002000003100000000022291000000000000000000303400002203000000000000000000000133423536115000005651310430132141884601714000650000000000099111312107000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAC...................................................................................................................251561.0056100000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000110000000002000000000000000010000500000000000000000000000000000000000000010000000000000000000000002000000100000002242420000001000000000000000000000000000000110120100000231101020105144001000040000000000051075168000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................241515.005150000000001000000010000000000000000010020004110104000000000000000000000000000000000012000000000203000030000000000000022000001000020000000000000002111018000000000000000200100100011020000001310200010340000001000000000011190100000000001022000001300002201000002000000000000000216119222150000041519130214053141164015160009260000001000027202015181617000000
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................201469.004690000000000000000000000010000000000010100002000000100000000000000000000000000000000000000000100212000012000000100000000000202040320000000000000000000170000000000000000200000102060200000011000100000000000000000000000440000000000000120000014100009030000000000000000000001151511205000001783025015101301035091100031300000000000725137126321000000
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................181457.0045700000000000000000000040100000000000001010000000021010000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000026432103000000000000000000000020000000000000422200080100000001000000000640365800000000000000004400000000000000000000000000000000637120212070100018110514012401406400029000000000001213322000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................221441.00441000000000100000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000100011000000000000000000003000000000000000000000000003000000004000000000000000000000000000001000000000000010000000010000401000000000000000000000013601100000010191200001813152054000040000000000080143211692743000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201438.004380000000000000000000000000000100000000001000010301001000015230000000000000000000000000000000000002010002000000000000000131010327060890000000000000002000012000000000000000101207003101161302610000010202100000000000001003000000110910000100000000000000001000001000000000000000000000003301941305000000123004312151120770007150000000000098943813000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................241384.0038400000000000000000000000000000000000000200210010111332010000000000000000000000000000000000000000040100010100000000000019110200040004200000000000000021000120210000000000002101000000000000000003020000104000000100000000000001000000000000000010021200001160100010400000000000000001601813902000001264012102061689717118700015000000000002444446000000
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................181375.00375000000000000000000001300000000000000010000110010210100000000000000000000000000000000000000000000000000000000000000000101000000000000000000010000123324302200000000000000000000000000000000122520000061410041201000000000166418390000000000000000650100000000000000000000000000000001017030300000221302063100025304000029000000000004022341000000
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................201354.00354000020000000000000000000000000000000001002110100024700000000000000000000000000000010010000000001030000110000000100000033040214010110000000000000000100030000000000000001402000202030100000010011000002000000000000000001121000000000000265000002300002501000000000000000000000130321101000006789001104110180650004600000000000413716641010000000
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................181326.0032600000000000000000000300400011001301000000010033101000000070000000000000000000000010000100000100231101241000001000001201000000000503000000000000000010106000000000000000140321231110602900000122300000101012000300000000008281610000000000000010035000000000001100000000000000000000300010100000447100237052200102800035000000000003344215000004
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................211318.00318000000000000100000000000000000000000000000100000100000000000000000000000000000000000000010000001200011000000010000101000000001010000000000000000100007000000000000000040200000105013000000411010000010000001100000000003142000000000000000022010000020010000001000000000000005154743200000244236000020211152200211400003000000000003410002000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................242316.006320000010000000000000000000000000000001001013112203001100000000000000000000000000000000000001000300000030000000210001030000010000100000000000000000100016011000000000000210300310004021000003602100000300000053000000000216124100000000000000051015000023040000020000000000200002185262344190000015282263121150126203121402911000929001000000002216226201025000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCATC.....................................................................................................................231237.00237000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017562000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................201230.0023000000000000000000000010000000000000100040010101000000000530000000000000000000000000020000021001090010200000000010000000100100100100000000000000000010160120000000000005601203211000400000080020000102000000000000000000564000001000000000046001000016040000000000000000000000100717030000023572222122300310300012000000000005922014000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTAT.....................................................................................................................231208.00208000000000000000000000000000000000000000001000010001000000000000000000000000000000000000000010000000008000000000000000100000000000000000000000000000002000000000000000010000000000000000000000000000000000000000000000010310000000000068430000010000000000000000000000000000000002000000000431700100001103031000200000000000061595263000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTC.....................................................................................................................231207.002070000000000000000000000000000000000022012070000201040000000000000000000000000000000000000000000100000000000000000000001000101000210000000000000000000030000000000000000000000000000000000000010000000000000000000000000103000000000000481800120410000310000001000000000000000002030200000001101031510080511106600001000000100002012001000000
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................191186.0018600000000000000000000000100000000000000002000003010000000020000000000000000000000000000000010000110001200000001000000000000000100000000000000000000000200000000000000011000001000000000000100000002000000000000000000011400000000000000000210000000000000000000000000000000058028081600000310200120001000011000000000000000051353103000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................252186.00372000000000000000000000000000000000000000000101210000000000000000000000000000000000000000000000001000000000000000000000100000200000000000000000000000204000000000000000000100100002000000003002000000200000010000000000081000100001000067002000000003600000000000000000000000091611101000006270042201236650960016250000000000019454122121633000000
...........................................................................................................................................................................GAAAAGCGA-TTTT-GAAGAG............................................................................................191183.00183000000000000000000000000000000000000000100000000000010000000000000000000000000001000000000000000000100000000000000000000010000000000000000000000110008100000000000000200000020000000000000000000000000000000000000000332147000000000000000022000000000000000000000000000000000113061200000000241500132511002700129000000010015124002000000
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................201172.0017200000000000000000000100000000000000000000000001010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000900000000000000000020012000000000000210000004014000000000000000014230000000000000000540000000000000000000000000000000093611090200000323211240002010022000510000001000031260253000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................231155.0015500000000000000000000000000001000000000010120100001002000281000000000000000000000000000000000000000000000000000000000110101030000000000000000000010000300000000000000011010021011505110000040000000100000000000000000000101422624020000000000011000022050000011000000000000001111529130000021120110001101100000022000000000000211000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGT..................................................................................................................261152.00152000000000000000000000000000000000000120000101000000000003400000000000000000000000000000000000000000000000000000000000000000000000000001000000000010002000000000000000000000000010000000000000100000000000000000000000000010001000200000000200400000310100000100000000000000000000100000000211050000100000220002610000000000567621245010001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCA....................................................................................................................241151.00151000000000000000000000000000000000001000000101020320000000000000000000000000000000000000001000010100000000000000000006100001202022000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001100610001101000001000000000000000011190130300000026041953003050503100012000000000001214121000000
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................191150.0015000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001211000000000000000000000000000000000001030000009000040000001000000586000000000000000001000000000000000000000000000000005292538000000001120421000002000200020000000000002413430000000
droEre2
GGT-CCAAATCGGT---------TTGGTTTTG-------------------------------------AGCC----AT----GTCGGA--------------------TCGATCGTATAG-C-A---CCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGC-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAGAT---CGAA---CACAATAGTTGTGA-AGTTTAAAT---------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231128627.00128627236903086231374646176830199107
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22156823.00568232709144722485221759389220
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21124173.002417311031224125354833032810
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2413784.0037846105672721069636
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2313725.0037251021191102915929531
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2212887.00288711832126810415270
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2112244.002244221201020110
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2412178.002178541215221108644611
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2012080.0020801099227104134731640
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2212011.002011186213996391
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................2211597.0015977509775211833810
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1911061.00106158533942811490
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201914.009149000101120
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231517.005171875644253670
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241448.004489711212071300
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................231363.00363314335462440
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241318.003186840512131620
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251274.00274360301388215
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231175.001759709151170
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211167.0016770011065210
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211166.001669310351180
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................221162.001626307165260
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211149.001491202143190
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................251141.001412401172430
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................201134.001341200001040
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................251119.001192102666240
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................252112.0022444313120530
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................191105.001059011349330
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................211101.00101101000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22198.009896000200
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................21188.008857310720
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25179.00791601037250
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................21174.007470020200
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................19169.006969000000
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19168.0068500101250
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23165.006560000320
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25159.00591011214310
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21157.005750112210
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22153.00532414112110
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................24152.00521201024150
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20152.0052250018180
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23151.005148000300
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20151.0051220121970
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18149.0049120018280
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................18143.004342000100
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19142.0042221001180
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20139.0039150201750
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23136.0036191042100
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18136.003629120130
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................23132.003232000000
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18128.0028500011111
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................25128.002840001680
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................24227.5055241302340
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24127.002727000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGC-.....................................................................22124.002402100030
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20124.002470001250
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACA...................................................................................................................25120.002030132110
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22118.001820001600
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................22115.001514000100
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................24114.00148000510
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................24113.001310002100
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCA....................................................................................................................24113.00131020271
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................22112.00125004120
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................23112.00121004340
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19111.00117011020
................................................................................................................................................TGGCAAGATGTCGGCATAGCGA......................................................................................................................22111.00112000630
.................................................................................................................................................GGCAAGATGTCGGCATAGCTTT.....................................................................................................................22110.001010000000
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAG.......................................................................2019.0096002010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTC.....................................................................................................................2319.0091012230
droYak3
CGG-CCAAATCGGT---------TTGGGTTTG-------------------------------------AGCC----AT----GTCGGC--------------------TCGATCGTATAG-C-A---CCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACACTCAGCGAGAT---CGAA---CCGAACAATAGTAA-AGTTTAAA------TCGTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231107502.001075028744140172887720908347446902630868823340
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22135732.00357329052130832931979192423914592138495930
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21124338.002433845381026397080161121133632130359660
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2016314.0063142266137618372110716445775740
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2412270.0022702635171011161001949653461
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2212254.0022541869741512382865412380
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2311878.00187837554476571262574361060
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................2311844.0018441695123957520160000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2211390.00139018131691514252000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2111256.001256131234103310010
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1911154.001154558436359771021170
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2411014.001014712771385751993040188
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201997.0099714974102121020
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................221966.0096613771763102449290000
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................211884.00884587028513260000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231409.00409676349316177141010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241283.00283143317016814270100
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241265.0026513237011926500000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231220.002203115112838320020
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251167.00167432517587620000
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................191129.001291126200000000
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211117.0011712563601390000
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................211105.00105981101400000
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................21199.00991146001311162000
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................19196.00961115101042440000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21195.0095194000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................22186.008611404157170010
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................18182.0082082000000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................21181.0081069461010000
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19179.007910580000110000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................25171.007126148213170000
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20169.0069261100050000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................25255.00110924198511320002
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22154.0054151001010000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGC-.....................................................................22152.0052015010000000
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18148.0048433111500030
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20148.00481811730090000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23143.0043141000010000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22140.004039806950000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23134.0034133000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20133.00330133124100000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25131.0031670035100000
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18131.00311015201120000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................24130.0030165013230000
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21128.0028025200100000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23126.0026011751110000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................23126.0026026000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25125.0025151151110000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................24222.50453174164100000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20122.0022015111310000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24121.0021020100000000
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18120.0020124310000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................24119.001928002340000
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19119.0019411000040000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................25117.001723220170000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................22115.0015213000000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTTT.....................................................................................................................22113.0013112000000000
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18111.001165000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20111.001114001140000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAC...................................................................................................................25111.001110910000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................25210.0020024211100000
..................................................................................................................................................GCAAGATGTCGGCATAGC........................................................................................................................1819.00936000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................2219.00902000250000
droEug1
GTG-CGAACTTGGT---------T----T------------------------------------TTCGAGTT----AT----GTCAGA--------------------TCGATCGTATAC-CCCAAAAATCTATTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAA---TA-------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCA-AG--CTCTTT---------T----T-----------------------------------TTTGCAGTCATGTCTATAAGTCGAA--------------------TCGGTCGTATAG-C-CACGCTTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-ATTT-TAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAAAGACAAGACAGTATTAA-AG----------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAG-CGAACTCTGT---------TT---T-----------------------------------TTTGGAGCTATGTATATTTGTCGAA--------------------TCGATCGTATAG-C-CCCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-ACTT-TAGGAACGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCATCAAGAT---CGAA---AA----------------TATAGGCATAATTTASizeHit CountTotal NormTotal
No Reads
droEle1
GTG-CGAACTCGAT---------T----G------------------------------------TTGGAGTTTTGTATGTTTGTATGA--------------------TTGATCGTTAAAGC-CTCACATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CAAAAG-CAAACCACTAAAAAAACTGTTAAAATACATAATSizeHit CountTotal NormTotal
No Reads
droRho1
GTG-CGAACTCGGC---------T-----------------------------------------TTGGAGTTTTGTAT----GTTGGA--------------------TCGATCGTTTTAGC--CCAAATCAGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGCTCAAT-TGAATAGTCATCGAGAT---CGAA------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTG-CGAACTCGGT---------T----T------------------------------------TTGGAGCT----AT----TCTGAA--------------------GCGATCGTAT-------CGAATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT-AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACATGAT---CAAG----AAACCAGCAGC-----TTTAAAAATACTTTGGSizeHit CountTotal NormTotal
No Reads
droKik1
GTGGCAAACTTGCT---------T-----------------------------------------TCGGTGTTATGT-------CTTGGGCTCTACAGGCCGGGCACATTCGATCATGGAT-C-ATGGATTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTT-GTAGAGCGCTATGCTGCATCTAGTCAGT-TATTCAACAGGAACAGTCAACGAGAT---CAAA------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GAA-CG----CGGT---------TCGGT------------------------------------------AGC----AG----ATTGGA--------------------GCGATCATATAG-C-CAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT-TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAA------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................23197862.009786213528207188066915437420318
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22131682.00316821703443569267491512319
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21122040.00220401147118210167776021098
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2415810.0058107788633535311152
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2215377.0053772521224091967476
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2313875.00387512311753421681599
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2012699.00269915642412127652113
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2111691.0016911677101111
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1911648.0016481293104926243
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2211305.00130512201045129
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2411109.001109335143138444175
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................2011108.001108110100160
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231843.00843556024220736
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251825.008251002128515179
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241632.006321771054275125
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................221615.006153673127733483
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241259.0025939803271109
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................211258.0025825600020
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................251239.002394510614146
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211201.00201821079516
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................251194.00194630066659
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231191.00191181113118247
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................241167.001671260011255
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211158.00158700225925
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211151.00151135022210
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................221149.00149662010638
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................191143.0014314300000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................231130.001302317343530
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................201122.00122110000111
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................221111.0011110700121
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................181109.0010910900000
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................21196.009625405323
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20192.00928101622
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................19180.0080102213431
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19174.007461000130
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23173.00736800041
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................21170.00703103603
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22163.00635002497
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................25161.006193043114
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20159.005931006202
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18158.00585420200
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................25252.001042241114719
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................25149.0049150002113
.................................................................................................................................................GGCAAGATGTCGGCATAGCTTT.....................................................................................................................22146.00464600000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25144.00447203824
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22144.004415101495
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................23143.004311009212
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23141.004125004111
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20137.003721000151
................................................................................................................................................TGGCAAGATGTCGGCATAGCTAT.....................................................................................................................23135.003511002166
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23135.00353500000
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20134.003415002116
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................24233.506719006384
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19132.00322700032
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................25229.5059140032913
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................23129.00292900000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19126.00261810313
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................27124.00243100812
................................................................................................................................................TGGCAAGATGTCGGCATAT.........................................................................................................................19124.00241900023
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21119.00191701100
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18119.00191610011
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24118.00181700001
..................................................................................................................................................GCAAGATGTCGGCATAGCTT......................................................................................................................20118.00181500021
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................24118.0018800442
................................................................................................................................................TGGCAAGATGTCGGCATAGCCT......................................................................................................................22118.00181003131
................................................................................................................................................TGGCAAGATGTCGGCATAGCGT......................................................................................................................22117.00170002141
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGC-.....................................................................22117.00170160100
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATC...................................................................................................................25117.00170101132
................................................................................................................................................TGGCAAGATGTCGGCATAGCTCT.....................................................................................................................23117.00171001321
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18116.00161001230
..................................................................................................................................................GCAAGATGTCGGCATAGCTGT.....................................................................................................................21116.00166000100
.................................................................................................................................................GGCAAGATGTCGGCATAGCTTTT....................................................................................................................23114.00141400000
................................................................................................................................................TGGCAAGATGTCGGCATT..........................................................................................................................18113.00131100200
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18113.0013730012
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGATT...................................................................................................................24113.00131200010
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................22112.0012810003
droBip1
GTG-CGAACGCGGT---------TCGG------------------------------------------AAGC----AG----TTTGGA--------------------GCGATCATATAG-C-ACAGAATCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT-G-AGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAGAT---CGAA------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CGT-CG--C--------------------------------------------------------------GC----GT----CTCGG------------------------ATCGT-------ACCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT-TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAAC-AGAT---CGA-------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231119869.00119869893362547285124019346475430196305096517200
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22152278.0052278526357267764411314310173555041576959
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21134446.00344462272543031350712919344864196552294
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2016563.00656319847734243091424234613136108
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1913578.00357853105178811731812753
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2213335.0033353323852203427132
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2113323.0033230331200142040
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2213304.00330482307438816471223319
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2313227.0032273917765567156235738487241
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................2212833.002833016622031073715662012
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................2012324.0023242231801012000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2411562.001562466431221111445624182
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2411397.001397270433177177351169729
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAGTT.................................................................................................................271878.0087864311151728921221642
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................191437.00437043700000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211428.0042813230302372240
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241425.004258179421247148592
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231416.004161828212912652137131
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211346.003460317402113000
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................211316.0031661587201007000
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................181268.00268026800000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231260.0026002060417270132
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................211246.00246024500001000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................231215.002153432122106621002
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211210.00210618900445020
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................201202.00202019900102000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................221169.00169016800001000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................251130.00130063304541383
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................201126.00126010711188000
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................191125.00125012500000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251116.00116152531647010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................251115.001150451401350110
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................201110.00110086210120000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAG...................................................................................................................251110.00110153607725155
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................211100.0010009321211000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAGT..................................................................................................................26194.009414012215022002
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18192.009208110260002
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................22188.0088163111613020
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................19174.0074132132229211
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20170.0070053000116000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................24166.0066033125618001
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................23164.006406300000010
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20163.006334851005010
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGC-.....................................................................22162.006203506210000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23159.005915600110000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22155.005512863188000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19148.004804110240000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24146.004604400100010
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23140.004002162902000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23138.003803700001000
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19137.003703500002000
.................................................................................................................................................GGCAAGATGTCGGCATAGCA.......................................................................................................................20136.003603500001000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................25135.0035010011216023
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................22135.003503500000000
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18130.003012701010000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22128.0028011000116000
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAG.......................................................................20127.002702700000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................22127.002701711611000
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18126.002602400011000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................24126.002602101022000
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18125.002591100400010
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAAGTT.................................................................................................................26125.002502500000000
..................................................................................................................................................GCAAGATGTCGGCATAGC........................................................................................................................18122.002202200000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAA......................................................................................................................22121.002101700004000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTTT.....................................................................................................................22117.001701700000000
.................................................................................................................................................GGCAAGATGTCGGCATAGT........................................................................................................................19114.001401400000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGTT....................................................................................................................23114.001401400000000
..................................................................................................................................................GCAAGATGTCGGCATAGCTT......................................................................................................................20112.001201200000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................21111.00110313012001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................23110.00100400600000
..................................................................................................................................................GCAAGATGTCGGCATAGCTGT.....................................................................................................................2119.0090900000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAGTC.................................................................................................................2719.0090090000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................2429.001801400202000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAAA..................................................................................................................2619.0090500001021
................................................................................................................................................TGGCAAGATGTCGGCATAGTA.......................................................................................................................2118.0080600020000
.......................................................................................................................................................................AGTTGAAAAGCGA-TCTT-TGAGA.............................................................................................2218.0080510002000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAAG...................................................................................................................2418.0080800000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAC...................................................................................................................2518.0080110000330
................................................................................................................................................TGGCAAGATGTCGGCATT..........................................................................................................................1818.0082600000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................2417.0071000321000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAC....................................................................................................................2317.0070700000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTC....................................................................................................................2417.0070113000020
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCA........................................................................1917.0070700000000
droPer2
CGT-CG--C--------------------------------------------------------------GC----GT----CTCGG------------------------ATCGT-------ACCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT-TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAAC-AGAT---CGA-------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................23139696.00396967089384830304623488616220
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22121609.002160936905481263342037285027
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21112526.0012526460444832236333761847
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2012351.0023517929113236241168
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................2311410.001410135121162416
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2311209.00120910522526224296333
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................221923.0092312931131311186
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................191797.007979436192105154
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAGTT.................................................................................................................271735.007351697052422445
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................241705.0070531571793115392
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................241691.0069137104108997354
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................221637.006372285163751066
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................211531.00531251005113
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201434.0043404270502
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................221373.003731931445427
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231318.0031814411063982
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241184.0018414221294870
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211161.001611670165819
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................251117.0011711025891
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................19177.00770760001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAGT..................................................................................................................26176.007618703642
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAG...................................................................................................................25170.007011606542
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................25169.006964071042
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................21162.006229190338
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................19152.005227472210
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22149.004909011263
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................18147.00470460100
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................21145.00450376200
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................23142.004201903146
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................21141.00413210080
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25140.004016081114
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................22139.0039111011115
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20139.00391370001
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18138.00383320012
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18134.00343230170
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19128.00283220012
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21127.00270260010
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22127.00270270000
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................21123.00237203110
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................24122.0022031756
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20122.00221102315
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................25120.00203002411
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20119.0019060094
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21118.00180143010
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18116.0016551032
................................................................................................................................................TGGCAAGATGTCGGCATAGCTCT.....................................................................................................................23114.00140101120
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23113.0013380011
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20113.0013150151
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19112.00120110100
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20112.0012070140
................................................................................................................................................TGGCAAGATGTCGGCATAGCAA......................................................................................................................22111.0011060050
....................................................................................................................................................AAGATGTCGGCATAGCTGG.....................................................................................................................1919.009900000
..................................................................................................................................................GCAAGATGTCGGCATAGCTGG.....................................................................................................................2118.008800000
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................1818.008160100
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................2317.007070000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGG.....................................................................................................................2217.007610000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................2317.007051100
..................................................................................................................................................GCAAGATGTCGGCATAGC........................................................................................................................1817.007160000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................2216.006312000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................1916.006140010
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGTT....................................................................................................................2315.005050000
..................................................................................................................................................GCAAGATGTCGGCATAGCTGT.....................................................................................................................2115.005030002
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................2314.004030001
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................2414.004040000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................2414.004000220
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAAA..................................................................................................................2614.004110002
.....................................................................................................................................................AGATGTCGGCATAGCTGG.....................................................................................................................1814.004400000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................2214.004000121
droWil2
GAA-TGTA--TATT---------TTGTGTCTCT-------------------------------------TTT----TT----TTTTGAGCA-----------------TC-ATCAT-TAT-------CATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAAT-------AT-TTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAAT-AGAGCAATCGACAATATTATCTAA---CGAAA----------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231247506.0024750618707144784892810955655837
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22157011.005701120124129688682107654472
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21128071.0028071925310398522212641934
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2018807.00880752042222874215292
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2414625.00462539937197917051171
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2313741.003741960753905465658
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................2313080.003080286616469854
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1912573.0025731531870305133112
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT......................................................................2212022.0020228442181365189
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2211579.00157924456651739213
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2211474.001474251228408497
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2111203.0012032211663111
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2421075.002150129464515745297
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201986.0098619959611
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................241965.0096510458127512164
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231931.00931672222478135
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................211860.0086082421924
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251706.0070612247111211215
...............................................................................................................................................TTGGCAAGATGTCGGCATAGC........................................................................................................................211434.0043434537281410
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................231374.0037417277268712
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................221366.003662736110139
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211260.002608370382841
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................191258.002584312617864
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................191220.002206213010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................221206.00206341381879
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................221166.001662646313330
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................181162.001620161100
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211151.00151198431512
..............................................................................................................................................ATTGGCAAGATGTCGGCATAGCT.......................................................................................................................231139.0013969157462
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211134.0013401151108
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................211122.001221200110
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................201108.00108362292120
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATTT..................................................................................................................261104.0010410693742
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20193.0093782040
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................23189.00895522048
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20189.00897512227
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19186.00862352416
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................25282.001645018341448
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18181.00811861101
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22180.0080079001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................24176.0076111393310
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21168.0068167000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGT.....................................................................................................................24165.0065553052
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18160.006018185136
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGTT.....................................................................23159.00592150366
..............................................................................................................................................ATTGGCAAGATGTCGGCATAGC........................................................................................................................22157.00572784171
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18153.0053315287
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20152.0052333907
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23148.0048144201
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20145.00450281142
................................................................................................................................................TGGCAAGATGTCGGCATAGCTCT.....................................................................................................................23143.00432411314
...............................................................................................................................................TTGGCAAGATGTCGGCATAG.........................................................................................................................20139.0039925401
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19138.0038719444
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................25138.0038049178
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................24137.0037371593
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT......................................................................21136.00360180153
................................................................................................................................................TGGCAAGATGTCGGCATAGCTCC.....................................................................................................................23135.00351516103
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATC...................................................................................................................25133.0033781611
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................24232.506539101024
..............................................................................................................................................ATTGGCAAGATGTCGGCATAG.........................................................................................................................21130.00301410420
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGG.....................................................................................................................24129.0029290000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTC....................................................................................................................24128.0028178201
..................................................................................................................................................GCAAGATGTCGGCATAGC........................................................................................................................18125.0025520000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTCT...................................................................................................................25124.002496324
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGAT....................................................................................................................25123.002334277
................................................................................................................................................TGGCAAGATGTCGGCATT..........................................................................................................................18123.00231111001
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCC.......................................................................................................................22120.0020190001
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18120.0020711002
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23219.0038036020
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTCC...................................................................................................................25118.0018511002
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22117.0017041003
..................................................................................................................................................GCAAGATGTCGGCATAGCTGG.....................................................................................................................21115.0015150000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA......................................................................22115.001558011
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGAA....................................................................................................................25213.5027163260
................................................................................................................................................TGGCAAGATGTCGGCATAGCTCCC....................................................................................................................24113.001356002
.................................................................................................................................................GGCAAGATGTCGGCATAGCA.......................................................................................................................20113.0013013000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTT......................................................................................................................23112.001255200
..................................................................................................................................................GCAAGATGTCGGCATAGCTGT.....................................................................................................................21112.001217112
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19110.001003070
................................................................................................................................................TGGCAAGATGTCGGCATAGCGA......................................................................................................................2219.00901251
..............................................................................................................................................ATTGGCAAGATGTCGGCATAGCC.......................................................................................................................2319.00990000
................................................................................................................................................TGGCAAGATGTCGGCATAT.........................................................................................................................1919.00908100
....................................................................................................................................................AAGATGTCGGCATAGCTGG.....................................................................................................................1918.00880000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGG.....................................................................................................................2218.00844000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................2527.001422406
droVir3
AA--CAAAATTTGCTAGCAACATT----T------------------------------------TTGTCGCGTTGTTT--------AT--------------------CCCGTCG------C-CTCGCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATTT-TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAATCAACAAAA----------------CAAT-------GTTTCAAT---------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231581891.00581891158145848180125034288517666602460241026149554760224882227890129001555178113294205038004917138424463293274613657129475169172420108317011630801036710432437043951224719146455843601623551925609442857553853524224334560132244668491571916413410236949252252154044270263234442311274121712497
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................221226261.0022626118550642920630665154149212513118534242691970102424162165020911096754769814143315271411561553197816311143296444244136460636130291269573831816000000515583965451911802867321218210512350026354038423410620139088103770014105881940225260247305
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................211165238.00165238846427631657638316116078290915323263784118000398824669092390234612979765349734532997886117214421070832196003930130910796060181169790931511110001331317342252442514354552191685894113108454891002324803269245517533262171124304351342475
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................20130282.00302824127148520193084514237113118040001591033779895215894998924485443415488164389010700011213561112001000153511787145142231187472104723110748014271713277533782029187834981699972938587
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................2317271.0072713617125823774099126000043040221206011146770170000413144000000211494053693766463209114550010002762641949024723410110
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1916923.0069231695815101441556722343300012611462162958221913715410744725751318604197562124900001912801000000000210131877121550011443107912672519242018191612
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2216827.006827169105942337211884871731000266188117288186134326276374751829252821819811030602820000482300000000000010107241226215763081101046592732532002130
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2316727.0067273732725534623102393351352000380182842261071051211422185526254030293172772380116010031110001001000010415212629591391787630761301902331231242651410911717
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................2216390.00639020853344211684221861500021213768150100481441422197293119145125884592313873090001043208000000000013101000311370440355300113122711500000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2416281.00628116518137936241162341111992000205128492056762138121176442435441320513481274014600004311810000000000214217516781971301024182300023925015612432118211612
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2416269.0062699460348373214940261018050001631222779618120183156701946674739627412143801730000391500230100102415131011271327110857560501115797227364152208279107526141921
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................2312412.00241252448171165791557023300041441281523024870110185450172000070249120000000011923123012332325199404500000010213300100
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2112006.00200622818790131205000000030031231010883703000012000000000000000000022600000079226300000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2211938.00193824916751385507100030421340750242951140600001400000000000000011011244200300089105141200001
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................2011624.00162433415170133210000022012041111000463703000004000000000000000001002900000000013200000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................2511476.001476158543154319253280000231441113426101910716181890883296036000011460000000000011001035451025306700063843936714600000
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................2111450.00145080132871121134303100069001077297111142160500012150000000000000000000091100100023000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................2411133.00113310715953421252110000046293069342818285812124331053702200004170000000000000105491012481090000002315811241800120
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................1911068.001068411329124163671097613836000322200713023011088330390000175800000000000113165481012501300091010515900000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................271896.0089600106382541032620001154898010550423261975823093000000515000000000102312001410648101400112210100000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................231803.00803551430271004000056433455313710608952132162572501600007700000000000000000301266301010021003201001
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211781.00781371712202106301100001118611776081613284033461155012000011300000000000000000400178600102014191524281501401
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241647.0064776334363210108000013723671649236127323116410190000511000000000021031214182555901210021252014182401001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251643.00643302628717000600002315898585171002112721107000101111200000010435615418822512710320002127181726704226
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................221571.0057123114827156121300009100656416152134125625928017000042200000000000000000101104600143691978111242234
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................201553.005534313311432101854000001201113921111100142302200005230010000000131156075010900000033301726152900000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211461.0046121287111130000001373443285023882321919000000120000000000000000000013001100000111100000
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................211423.0042326557110116010000150010240010000100203000002000000000000000003313400000047747700000
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................181415.0041535136041795029381300000000071091021222201000002100100000000020127332510100000018341014181000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................252406.5081315938421744117000039303861122103064696562329811191101490000000000010111016111197020613162217173112367311
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................251359.003591591650531290000952413473221211135100000000500010000000011055725122260012002622168271704222
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................201315.00315119800341000000711456112997533426131327080000515000000000000000000007500000001001000000
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................181304.0030462871311401110008571017161210022412180140130000160000000000000004441010004200363311000020
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211301.00301455803052701100003200001401411007300040000340000000001000002320116211000000542351100001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................251265.002659189000000200001518113810181133011010330100200000300000000000000000111153000000010000000000
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................181187.0018728319031610531040000000001300910103404091000215000000000000000000000500000134035300000
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................191182.00182301740010000000000000000000000000000000000000000000000000000000000000002100100000
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................181165.00165411590000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................231163.00163143571100000000001000000200010100400000010000000000000112000341300000091183171300100
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................201154.001541621000021002000011000030210000223202000000000000000000000100001100000000104400000
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................201142.00142554000510000000010110121001002314010000020000000000000000000063500301020114100272
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................221140.001409474002021000041000119052111044450500000600000000000000000102131701101011225100000
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................191132.00132127801143000000000010040000010100006000002000000000000000230000100000000000300000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................241126.00126113500110000000710411542101000000311102000003000000000000000003004500000010000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................241123.00123131380010002000023131324500110540100000002000000000000001000111500000059868100200
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................221120.00120193472000000100012110021110110222401000000000000000000000122100100100035513000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGT..................................................................................................................261109.001090018711021100002102100120031018105800000002000000000010000000080600000022300000000
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................211106.0010600771201000000001030001200000722300000010000000000000000000001000200000000000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................211102.0010210990000000000000000000000000000000000000000000000000000000000200000000000000000
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19194.00941332211602240000000000300000103110010000016000000000000000200011200000000062000000
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................18179.007981220027113000001000070070000000104000004000000000000000120011300000000000200000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25173.00733066000001000020000000402000410300000010000000000000012002790300000001912300000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24172.007200440000000000001000010100010100100000000010000000010114041110200010000202000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23170.007000143000002000013152112200010381801000000000000000000000000122100300010010000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATC...................................................................................................................25168.006841050000010000000000100000000105000000000100000000231230212530400000010100000001
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20161.006141150010000000003011021210010130203000002000000000000000000005800100001011000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19155.005500121020001100001330132111000410504000012000000000000000000013010000000000000000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22150.005001460000000000000000001000000001100000000000000000000000000000000000000000000000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGC........................................................................................................................21145.004513040000102000000000000000000100100000000000000000000000001200401000024322200000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23144.004410340000001000000000000000000000101000000000000000000000000000200000012001000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................24242.0084021200020040000320212310002113221104000000000000000000000000023900000020303200000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22142.0042015001000000000100011200000000101020000000000000000000000010011400000001000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTAT...................................................................................................................25141.00413800010000000001043102400000010100000000000000000000000000004800000000000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCAA......................................................................................................................22139.00390070010000000022111070310000221200000000000000000000000000001101020000000000001
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAAA..................................................................................................................26239.00782080020101000035001201200101555800000001000000000000000000000900000111506100000
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23137.003700330010000000000000000000000001000000000000000000000000000010000000000010000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................22136.00360140010000000010000010100101100300000000000000000000000000002000000012425500000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................24130.00301010231002000010110010210000000007000001000000000001000000021100000000000000000
................................................................................................................................................TGGCAAGATGTCGGCATT..........................................................................................................................18128.00284550012000000010100000300000010100000000000000000000000010000000000021000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTAT.....................................................................................................................23124.00240130020000000000120122100100200102000001000000000000000000000200000000000000000
................................................................................................................................................TGGCAAGATGTCGGCATAGCGA......................................................................................................................22122.00220001000102000000010060000100120001000021000000000000000000000100000002000000000
................................................................................................................................................TGGCAAGATGTCGGCATAA.........................................................................................................................19122.00220070000000000010000002200010032003000000000000000000000000001000000000000000000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGC-.....................................................................22122.002210014110000000000000000110000000101000000000000000000000000010000000000000000000
droMoj3
GAA-GTTGTTTAAT---------TTGTGTTTCAAATATATATATCATCTATATTTATAAATA----------------T----TTCGG--------------------------TT--T-----ATCGCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGC-AT-T-GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAAC------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................231165483.001654831590124187255429036503254906
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................22133013.0033013146229651523161768787408
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................21127571.002757116093681504176814316707
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................2015662.0056621719151081013122597
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................2213279.0032795226462428203722
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................1911693.0016931293676777234
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2411691.0016912321208491188976
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................2211601.001601145711336958
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................2211596.001596685218218515527
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................2011438.001438142800217
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................2111430.001430142200035
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................2311399.0013993909089110181539
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................2411217.001217275624474271491
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................271525.0052540870135047
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGC-.....................................................................221458.0045800004580
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................211451.0045140554334
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................231285.00285141327118833
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231280.00280913322426212
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................251230.0023031314650108
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................241218.0021823106214730
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251200.0020037123634108
............................................................................................................................................GAATTGGCAAGATGTCGGCATAG.........................................................................................................................231198.00198270101619
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................251189.0018931115631105
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................211172.00172131611312
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................211159.00159847022442
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................191142.0014214100010
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................241133.001333011522362
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................181123.0012312300000
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................191120.001203024033627
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................211102.00102570712125
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19197.00978701009
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................23196.0096501912321
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20194.00948600026
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................22176.007632184823
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18172.00726100542
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21170.007035500300
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................25270.0014019102102475
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21167.00676600100
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................20156.00564913210
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................20150.005015310238
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................23149.004961000330
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................20148.0048190421013
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGT..................................................................................................................26146.00462800333
................................................................................................................................................TGGCAAGATGTCGGCATAGA........................................................................................................................20143.004318023218
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22143.00434100002
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25142.004221710193
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25138.00389096014
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTC.................................................................................................................27137.00370000370
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................22132.00326017135
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23128.00282800000
................................................................................................................................................................................................CGCTATGCTGCATCTAGTC.........................................................................19127.00272202030
.....................................................................................................................................................AGATGTCGGCATAGCTGA.....................................................................................................................18126.002610200140
..................................................................................................................................................................................................CTATGCTGCATCTAGTCAGT-.....................................................................20125.00253000220
............................................................................................................................................GAATTGGCAAGATGTCGGCATAGC........................................................................................................................24123.00231000220
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23122.00222100001
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................22121.00212100000
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................23121.00212100000
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................24119.0019401536
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................18119.00191500103
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24117.00171600100
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................19113.0013600025
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................23111.0011190100
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................22111.0011203204
............................................................................................................................................GAATTGGCAAGATGTCGGCATA..........................................................................................................................22111.00111000100
droGri2
GGT-TCAACTA---------------------------------------------CAAACGTTTCT--CGTT---------------A--------------------TCTCTCGCGATT-----CTCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATCT-T-ATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACACTCAAC------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGA.....................................................................................................................23128050.0028050395824092
................................................................................................................................................TGGCAAGATGTCGGCATAGCTG......................................................................................................................2217200.00720040083192
................................................................................................................................................TGGCAAGATGTCGGCATAGCT.......................................................................................................................2115229.00522929532276
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAT....................................................................................................................2411379.0013792461133
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGT.....................................................................................................................231556.00556143413
................................................................................................................................................TGGCAAGATGTCGGCATAGC........................................................................................................................201512.00512317195
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGA.....................................................................................................................221403.0040338518
.................................................................................................................................................GGCAAGATGTCGGCATAGCTG......................................................................................................................211394.003943931
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-.....................................................................221368.0036835018
................................................................................................................................................TGGCAAGATGTCGGCATAGCTT......................................................................................................................221349.00349204145
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAA....................................................................................................................241286.0028690196
.................................................................................................................................................GGCAAGATGTCGGCATAGCT.......................................................................................................................201233.002332303
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGC.....................................................................................................................231197.001972195
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................271153.001535796
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGG.....................................................................................................................231145.001455140
................................................................................................................................................TGGCAAGATGTCGGCATAG.........................................................................................................................191142.001429943
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACG...................................................................................................................251122.0012221101
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATT...................................................................................................................251113.001131697
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTT....................................................................................................................24163.00631053
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAC....................................................................................................................24157.00571938
................................................................................................................................................TGGCAAGATGTCGGCATA..........................................................................................................................18150.0050500
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAT...................................................................................................................25134.0034628
.................................................................................................................................................GGCAAGATGTCGGCATAGC........................................................................................................................19134.0034331
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAGT-.....................................................................21131.0031310
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTT.....................................................................................................................23128.0028217
..................................................................................................................................................GCAAGATGTCGGCATAGCTGA.....................................................................................................................21123.0023203
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAG.......................................................................21122.0022211
..................................................................................................................................................GCAAGATGTCGGCATAGCTG......................................................................................................................20121.0021201
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAT....................................................................................................................23121.0021201
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAAA...................................................................................................................25218.0036828
..................................................................................................................................................GCAAGATGTCGGCATAGCT.......................................................................................................................19118.0018180
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGT.....................................................................................................................22114.0014140
....................................................................................................................................................AAGATGTCGGCATAGCTGA.....................................................................................................................19114.001477
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTTT...................................................................................................................25113.001349
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAA....................................................................................................................23112.0012120
.................................................................................................................................................GGCAAGATGTCGGCATAGCTT......................................................................................................................21112.0012120
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACT...................................................................................................................25111.001156
................................................................................................................................................TGGCAAGATGTCGGCATAGCTA......................................................................................................................22111.001147
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCT....................................................................................................................24111.0011011
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGGT....................................................................................................................24110.0010010
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTGA.....................................................................................................................24110.001091
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTG.....................................................................................................................2319.00990
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-T....................................................................2319.00981
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCTG......................................................................................................................2318.00880
...................................................................................................................................................CAAGATGTCGGCATAGCTGA.....................................................................................................................2018.00826
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGACGTT.................................................................................................................2616.00660
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCA........................................................................2016.00633
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGT..................................................................................................................2616.00633
................................................................................................................................................TGGCAAGATGTCGGCATAGCA.......................................................................................................................2116.00624
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTTT....................................................................................................................2416.00651
...............................................................................................................................................TTGGCAAGATGTCGGCATAGCT.......................................................................................................................2216.00660
...................................................................................................................................................CAAGATGTCGGCATAGCTG......................................................................................................................1916.00660
................................................................................................................................................TGGCAAGATGTCGGCATAGCTC......................................................................................................................2216.00624
.................................................................................................................................................GGCAAGATGTCGGCATAG.........................................................................................................................1815.00550
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGAG....................................................................................................................2415.00541
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGGA....................................................................................................................2415.00514
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGATA...................................................................................................................2524.50927
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGACG...................................................................................................................2414.00440
.................................................................................................................................................................................................GCTATGCTGCATCTAGTCAG.......................................................................2014.00440
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGATT...................................................................................................................2413.00330
....................................................................................................................................................AAGATGTCGGCATAGCTG......................................................................................................................1813.00330
................................................................................................................................................TGGCAAGATGTCGGCATAGCC.......................................................................................................................2113.00312
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGTA....................................................................................................................2413.00312
.................................................................................................................................................GGCAAGATGTCGGCATAGCTGAC....................................................................................................................2313.00330
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGA-.....................................................................2212.00220
................................................................................................................................................TGGCAAGATGTCGGCATAGT........................................................................................................................2012.00211
................................................................................................................................................................................................CGCTATGCTGCATCTAGTCAGT-TT...................................................................2412.00220
.................................................................................................................................................GGCAAGATGTCGGCATAGCTTT.....................................................................................................................2212.00220
................................................................................................................................................TGGCAAGATGTCGGCATAGCTTC.....................................................................................................................2312.00211
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACGTTT................................................................................................................2812.00220
................................................................................................................................................TGGCAAGATGTCGGCATAGCG.......................................................................................................................2112.00211
..............................................................................................................................................ATTGGCAAGATGTCGGCATAGCTG......................................................................................................................2412.00220
...................................................................................................................................................CAAGATGTCGGCATAGCT.......................................................................................................................1812.00220
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGGG....................................................................................................................2412.00220
................................................................................................................................................TGGCAAGATGTCGGCATAGCAT......................................................................................................................2212.00202
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGCA....................................................................................................................2412.00202
...............................................................................................................................................TTGGCAAGATGTCGGCATAGC........................................................................................................................2111.00110
................................................................................................................................................TGGCAAGATGTCGGCATAGCTGACC...................................................................................................................2511.00110

Generated: 10/20/2015 at 07:32 PM