ID:

dse-mir-315

 Coordinate:

scaffold_19:820242-820323 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

pre_miRNA [Dsec\mir-315-RM]; utr5 [utr5_plus_8593]; miRNA [Dsec\miR-315-RA]

No Repeatable elements found

Sense Strand Reads

TTAAGCCTTTGGCTAAGTTTGGCTGTTTTATATAAGAGTTCCTTCACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTGTACCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTGAAGATTTGAAAGCACTTCGTTTTGGTAAGTTAAGA

**********************************************.((((((((((....(((((((((((((((.(((((((...((((...)))).))))))))))))))))))))))....))))))).)))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 V115

head

 V113

male body		 M054

female body
.............................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 0 1 53466.00 53466 38375 14795 183 113
.............................................................TTTTGATTGTTGCTCAGAAAGC................................................................................................... 22 0 1 13083.00 13083 7285 5690 75 33
.............................................................TTTTGATTGTTGCTCAGAAAG.................................................................................................... 21 0 1 3628.00 3628 1053 2508 58 9
.............................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................. 24 1 1 907.00 907 634 266 5 2
..............................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................. 22 0 1 334.00 334 287 35 2 10
.............................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................. 23 1 1 290.00 290 66 220 1 3
.............................................................TTTTGATTGTTGCTCAGAAA..................................................................................................... 20 0 1 262.00 262 37 220 0 5
.............................................................TCTTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 254.00 254 233 19 1 1
.............................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................. 24 1 1 167.00 167 109 57 1 0
.....................................................................................................CTTTCGAGCAATAATTGAAACC........................................................... 22 0 1 165.00 165 86 63 2 14
.............................................................CTTTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 165.00 165 140 25 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGA................................................................................................... 22 1 1 164.00 164 15 146 3 0
.............................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................. 23 1 1 137.00 137 71 63 3 0
.............................................................TTTTGATTGTTGCTCAGAA...................................................................................................... 19 0 1 118.00 118 10 107 0 1
.............................................................TTTTGATTGTTGCTCAGA....................................................................................................... 18 0 1 115.00 115 14 101 0 0
.............................................................TTTTGATTGTTGCTCAGAAGCC................................................................................................... 22 2 1 112.00 112 100 12 0 0
.............................................................TTTTGATTGTTGCTTAGAAAGCC.................................................................................................. 23 1 1 97.00 97 90 7 0 0
.............................................................TTTTGATTGTTGCTCAGAAGGCC.................................................................................................. 23 1 1 92.00 92 67 24 1 0
.............................................................TTTTGATTATTGCTCAGAAAGCC.................................................................................................. 23 1 1 89.00 89 76 13 0 0
.............................................................TTTTGATTGCTGCTCAGAAAGCC.................................................................................................. 23 1 1 88.00 88 70 18 0 0
..............................................................TTTGATTGTTGCTCAGAAAGC................................................................................................... 21 0 1 85.00 85 72 11 0 2
.............................................................TTTTGATTGTTGCTCAAAAAGCC.................................................................................................. 23 1 1 78.00 78 57 20 1 0
.............................................................TTTTGATTGTTGCTCAGAGAGCC.................................................................................................. 23 1 1 77.00 77 58 19 0 0
.............................................................TTTTGATTGTTGCTCAGGAAGCC.................................................................................................. 23 1 1 72.00 72 56 15 1 0
.............................................................TTTTGATTGTTGCTCGGAAAGCC.................................................................................................. 23 1 1 72.00 72 59 13 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGTC.................................................................................................. 23 1 1 63.00 63 57 6 0 0
.............................................................TTTTGATTGTTTCTCAGAAAGCC.................................................................................................. 23 1 1 63.00 63 39 23 1 0
.............................................................TTTTGATTGTTGCTCAGAAAGT................................................................................................... 22 1 1 61.00 61 12 47 2 0
.............................................................TTTTGATTGTTCCTCAGAAAGCC.................................................................................................. 23 1 1 61.00 61 47 13 0 1
.............................................................TTTTGATTGTTGCTCAGAAACCC.................................................................................................. 23 1 1 58.00 58 46 12 0 0
.............................................................TTTCGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 56.00 56 44 12 0 0
.............................................................TTTTGATTGTTGCCCAGAAAGCC.................................................................................................. 23 1 1 54.00 54 41 13 0 0
.............................................................TTTTGATTGTCGCTCAGAAAGCC.................................................................................................. 23 1 1 53.00 53 42 11 0 0
.............................................................TCTTGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 51.00 51 42 9 0 0
.............................................................TTTTGATTGTTGTTCAGAAAGCC.................................................................................................. 23 1 1 47.00 47 40 7 0 0
.............................................................TTTTGATCGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 46.00 46 32 13 1 0
...............................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................. 21 0 1 45.00 45 37 8 0 0
.............................................................CTTTGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 44.00 44 34 10 0 0
.............................................................TTTTGGTTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 43.00 43 35 8 0 0
.............................................................TTCTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 42.00 42 33 9 0 0
.............................................................TTTTGATTCTTGCTCAGAAAGCC.................................................................................................. 23 1 1 40.00 40 33 6 1 0
.............................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................. 24 0 1 37.00 37 23 13 1 0
.............................................................TTTTGATTGTTACTCAGAAAGCC.................................................................................................. 23 1 1 37.00 37 26 11 0 0
.............................................................TTTTGACTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 35.00 35 29 6 0 0
.............................................................TTTTGATTGATGCTCAGAAAGCC.................................................................................................. 23 1 1 34.00 34 19 15 0 0
.............................................................TTTTGATTGTTGCTCAGAAATCC.................................................................................................. 23 1 1 33.00 33 20 13 0 0
.............................................................TTTTGATTTTTGCTCAGAAAGCC.................................................................................................. 23 1 1 33.00 33 22 11 0 0
.............................................................TTTTTATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 32.00 32 16 16 0 0
.............................................................TTTTGATTGTTGCTCAGAAAACC.................................................................................................. 23 1 1 31.00 31 20 10 0 1
.............................................................TTTTGATTGTTGCTAAGAAAGCC.................................................................................................. 23 1 1 28.00 28 23 5 0 0
.............................................................TTTTGATTGTTGCTCCGAAAGCC.................................................................................................. 23 1 1 28.00 28 19 9 0 0
.............................................................TTTTGATTGTTGCTTAGAAAGC................................................................................................... 22 1 1 27.00 27 26 1 0 0
.............................................................TTTTCATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 26.00 26 22 4 0 0
.............................................................TTTTGATTGTTGCTCAGTAAGCC.................................................................................................. 23 1 1 26.00 26 24 2 0 0
..............................................................TTTTATTGTTGCTCAGAAAGCC.................................................................................................. 22 1 1 26.00 26 24 2 0 0
.............................................................TTTTGATTGTTGCTCAGAACGCC.................................................................................................. 23 1 1 25.00 25 16 9 0 0
.............................................................TTTTGAATGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 23.00 23 7 16 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGAC.................................................................................................. 23 1 1 23.00 23 8 15 0 0
.............................................................TTTTGATTGTTGCTCAGAAACC................................................................................................... 22 1 1 21.00 21 9 12 0 0
.............................................................TTTTGATAGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 21.00 21 7 14 0 0
.............................................................TTTTGATTGTTCCTCAGAAAGC................................................................................................... 22 1 1 21.00 21 16 5 0 0
.............................................................TTTTGATTGCTGCTCAGAAAGC................................................................................................... 22 1 1 21.00 21 12 9 0 0
.............................................................TTTTGATTGTTGCTCAGAATGCC.................................................................................................. 23 1 1 21.00 21 20 1 0 0
.............................................................TTTTGATTGTTGCTCAGAGAGC................................................................................................... 22 1 1 19.00 19 14 5 0 0
.............................................................TTTTGATTGTTGCTCACAAAGCC.................................................................................................. 23 1 1 19.00 19 12 7 0 0
.............................................................TTTTAATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 19.00 19 14 5 0 0
.............................................................TTTTGGTTGTTGCTCAGAAAGC................................................................................................... 22 1 1 19.00 19 15 4 0 0
.............................................................TTTTGATTGTTGCTCAGCAAGCC.................................................................................................. 23 1 1 19.00 19 12 5 0 2
.............................................................TTTTGATTGTTGCTCATAAAGCC.................................................................................................. 23 1 1 18.00 18 13 4 0 1
.............................................................ATTTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 18.00 18 7 10 1 0
.............................................................TTTTGATTATTGCTCAGAAAGC................................................................................................... 22 1 1 17.00 17 11 6 0 0
.............................................................TTTTGATTGTTGATCAGAAAGCC.................................................................................................. 23 1 1 17.00 17 14 3 0 0
.............................................................TTTTGATTGTTTCTCAGAAAGC................................................................................................... 22 1 1 17.00 17 14 3 0 0
.............................................................TTTTGATTGTTGCTCAAAAAGC................................................................................................... 22 1 1 17.00 17 10 7 0 0
.............................................................TTTTGATTGTTGCTCAGGAAGC................................................................................................... 22 1 1 17.00 17 13 4 0 0
.............................................................GTTTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 16.00 16 9 7 0 0
..............................................................TTTGATTGTTGCTCAGAAAG.................................................................................................... 20 0 1 16.00 16 12 3 0 1
.............................................................TTTAGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 16.00 16 8 8 0 0
............................................................CTTTTGATTGTTGCTCAGAAAGCC.................................................................................................. 24 1 1 16.00 16 12 4 0 0
.............................................................TTTTGATTGTTGCTCAGACAGCC.................................................................................................. 23 1 1 16.00 16 8 6 2 0
.............................................................TTTTGATTGTTGCTCGGAAAGC................................................................................................... 22 1 1 15.00 15 13 2 0 0
.............................................................TTTTGATTGTTGCTCAGAAAA.................................................................................................... 21 1 1 15.00 15 1 12 1 1
.............................................................TTTCGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 15.00 15 10 5 0 0
.............................................................TTTTGATCGTTGCTCAGAAAGC................................................................................................... 22 1 1 15.00 15 5 10 0 0
.............................................................TTTTGCTTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 14.00 14 5 9 0 0
.............................................................TTTTGATTGTTGTTCAGAAAGC................................................................................................... 22 1 1 14.00 14 12 2 0 0
.............................................................TTCTGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 14.00 14 9 5 0 0
.............................................................TTTTGATTGTCGCTCAGAAAGC................................................................................................... 22 1 1 14.00 14 9 4 1 0
.............................................................TTTTGATTGTTGCACAGAAAGCC.................................................................................................. 23 1 1 14.00 14 14 0 0 0
.............................................................TTTTGATTGTTGCTCAGATAGCC.................................................................................................. 23 1 1 13.00 13 12 1 0 0
.............................................................TTTTGATTGTTACTCAGAAAGC................................................................................................... 22 1 1 12.00 12 6 6 0 0
.............................................................TTTTGATTGTAGCTCAGAAAGCC.................................................................................................. 23 1 1 12.00 12 12 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAGGC................................................................................................... 22 1 1 12.00 12 6 6 0 0
...............................................................TTTATTGTTGCTCAGAAAGCC.................................................................................................. 21 1 1 11.00 11 10 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAAC................................................................................................... 22 1 1 11.00 11 3 8 0 0
.............................................................TTTTGATTGTTGCTCTGAAAGCC.................................................................................................. 23 1 1 11.00 11 9 2 0 0
.............................................................TTTTGATTGTTGCTCAGAAGC.................................................................................................... 21 2 2 10.50 21 19 2 0 0
.............................................................TTTTGATTGTTGCTCAAAAGCC................................................................................................... 22 3 3 10.33 31 19 12 0 0
...............................................................TTGATTGTTGCTCAGAAAGC................................................................................................... 20 0 1 10.00 10 7 2 0 1
.............................................................TTTTGATTCTTGCTCAGAAAGC................................................................................................... 22 1 1 10.00 10 7 3 0 0
.............................................................TATTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 10.00 10 0 10 0 0
.............................................................TTTTGAATGTTGCTCAGAAAGC................................................................................................... 22 1 1 10.00 10 2 8 0 0
.............................................................TTTTGATTGTTGCCCAGAAAGC................................................................................................... 22 1 1 10.00 10 7 3 0 0
.............................................................TTTTGATTGTTGCTCAGAACGC................................................................................................... 22 1 1 9.00 9 5 4 0 0
............................................................CTTTTGATTGTTGCTCAGAAAGC................................................................................................... 23 1 1 9.00 9 3 6 0 0
.............................................................TTTTGTTTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 9.00 9 6 3 0 0
.............................................................CTTTGATTGTTGCTCAGAAAG.................................................................................................... 21 1 1 9.00 9 5 4 0 0
.............................................................TTTTGATTGTTGCTCAGCAAGC................................................................................................... 22 1 1 9.00 9 4 5 0 0
..............................................................TTTTATTGTTGCTCAGAAAGC................................................................................................... 21 1 1 9.00 9 6 3 0 0
.............................................................TTTTGATTGTTGCTTAGAAAG.................................................................................................... 21 1 1 9.00 9 9 0 0 0
.............................................................TCTTGATTGTTGCTCAGAAAG.................................................................................................... 21 1 1 8.00 8 7 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................. 23 2 1 8.00 8 3 5 0 0
.............................................................TTTTGATTGTTGCTCGGAAAG.................................................................................................... 21 1 1 8.00 8 3 5 0 0
.............................................................TTTTGATTGTTGCTCAGAGAG.................................................................................................... 21 1 1 8.00 8 3 4 1 0
.............................................................TTTTGATTGTTGCTAAGAAAGC................................................................................................... 22 1 1 8.00 8 7 1 0 0
.............................................................TTTTGATTGTTGGTCAGAAAGCC.................................................................................................. 23 1 1 7.00 7 6 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................. 23 1 1 7.00 7 2 5 0 0
............................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................. 24 0 1 7.00 7 6 1 0 0
.............................................................TTTTGATTGTTGATCAGAAAGC................................................................................................... 22 1 1 7.00 7 4 3 0 0
.............................................................TTTTGATAGTTGCTCAGAAAG.................................................................................................... 21 1 1 7.00 7 1 6 0 0
.............................................................ATTTGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 7.00 7 3 4 0 0
.............................................................TTTCGATTGTTGCTCAGAAAG.................................................................................................... 21 1 1 7.00 7 2 5 0 0
.............................................................TTTTGATAGTTGCTCAGAAAGC................................................................................................... 22 1 1 7.00 7 2 5 0 0
......................................................................................................TTTCGAGCAATAATTGAAACC........................................................... 21 0 1 7.00 7 3 3 1 0
.............................................................TTTTGATTGTTGCTCAGAAATC................................................................................................... 22 1 1 7.00 7 4 3 0 0
.............................................................TTTTGATTGATGCTCAGAAAGC................................................................................................... 22 1 1 6.00 6 2 4 0 0
.............................................................TTTTTATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 6.00 6 2 4 0 0
.............................................................TTTTGATTGTTGCTGAGAAAGCC.................................................................................................. 23 1 1 6.00 6 4 2 0 0
.............................................................TTTTGATTTTTGCTCAGAAAG.................................................................................................... 21 1 1 6.00 6 0 6 0 0
.............................................................TTTTGATTGTTGCGCAGAAAGCC.................................................................................................. 23 1 1 6.00 6 6 0 0 0
.............................................................TTTTGATTTTTGCTCAGAAAGC................................................................................................... 22 1 1 6.00 6 2 4 0 0
.............................................................TTTTCATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 6.00 6 1 5 0 0
.............................................................GTTTGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 5.00 5 1 4 0 0
.............................................................TTTTGATTGGTGCTCAGAAAGCC.................................................................................................. 23 1 1 5.00 5 5 0 0 0
...........................................................AATTTTGATTGTTGCTCAGAAAGCC.................................................................................................. 25 0 1 5.00 5 3 2 0 0
.............................................................TTTTGATTGTTGCTCAGACAGC................................................................................................... 22 1 1 5.00 5 4 1 0 0
.............................................................TTTTGATTGTTGCTCTGAAAGC................................................................................................... 22 1 1 5.00 5 2 3 0 0
.............................................................TGTTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 5.00 5 2 3 0 0
.............................................................TTTTGATCGTTGCTCAGAAAG.................................................................................................... 21 1 1 5.00 5 3 2 0 0
.............................................................TTGTGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 5.00 5 4 1 0 0
.............................................................TTTTGATTGCTGCTCAGAAAG.................................................................................................... 21 1 1 5.00 5 4 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGGC.................................................................................................. 23 1 1 5.00 5 2 3 0 0
.............................................................TTTTAATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 5.00 5 0 5 0 0
.............................................................TTTTGATTGTCGCTCAGAAAG.................................................................................................... 21 1 1 5.00 5 1 4 0 0
.............................................................TTATGATTGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 4.00 4 2 2 0 0
..............................................................TTTGATTGTTGCTCAGAAA..................................................................................................... 19 0 1 4.00 4 3 1 0 0
.............................................................TATTGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 4.00 4 1 3 0 0
.............................................................TTTTGATTGTTGCTCAAAAAG.................................................................................................... 21 1 1 4.00 4 0 4 0 0
.............................................................TTTTGATTGTTGCTCAGAAT..................................................................................................... 20 1 1 4.00 4 0 4 0 0
.............................................................TTTTGGTTGTTGCTCAGAAAG.................................................................................................... 21 1 1 4.00 4 2 2 0 0
.............................................................TTTTGATTGTTGCTAAGAAAG.................................................................................................... 21 1 1 4.00 4 1 3 0 0
.............................................................TTTTGATTGTTGCCCAGAAAG.................................................................................................... 21 1 1 4.00 4 1 3 0 0
.............................................................TTTTGATTGTTGCTCCGAAAGC................................................................................................... 22 1 1 4.00 4 1 3 0 0
...............................................................TTGATTGTTGCTCAGAAAG.................................................................................................... 19 0 1 4.00 4 3 1 0 0
.............................................................TTTTGACTGTTGCTCAGAAAG.................................................................................................... 21 1 1 4.00 4 1 3 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................. 24 2 1 4.00 4 1 3 0 0
.............................................................TTTTGATTATTGCTCAGAAAG.................................................................................................... 21 1 1 4.00 4 2 2 0 0
.............................................................TTTTGATTGTTGCTCAAAAG..................................................................................................... 20 2 4 3.50 14 1 13 0 0
.............................................................TTTTGATTGTACCTCAGAAAGCC.................................................................................................. 23 2 1 3.00 3 3 0 0 0
.............................................................TTTTGATTGATGCTCAGAAAG.................................................................................................... 21 1 1 3.00 3 0 3 0 0
.............................................................TTTTTATTGTTGCTCAGAAAG.................................................................................................... 21 1 1 3.00 3 0 3 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGCCAT................................................................................................ 25 1 1 3.00 3 2 1 0 0
.............................................................TTTTGATTGTTTCTCAGAAAG.................................................................................................... 21 1 1 3.00 3 0 2 0 1
.............................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................. 24 2 1 3.00 3 0 3 0 0
.............................................................TTTTGATTGTTGCTCAGAT...................................................................................................... 19 1 1 3.00 3 0 3 0 0
.................................................................GATTGTTGCTCAGAAAGCC.................................................................................................. 19 0 1 3.00 3 3 0 0 0
.............................................................TTTTGATTGTTGCTCAGGAAG.................................................................................................... 21 1 1 3.00 3 3 0 0 0
.............................................................TTTTGATTGTTACTCAGAAAG.................................................................................................... 21 1 1 3.00 3 0 3 0 0
.............................................................TTTTGATTGTTGCTGAGAAAGC................................................................................................... 22 1 1 3.00 3 0 2 1 0
.............................................................ATTTGATTGTTGCTCAGAAAG.................................................................................................... 21 1 1 3.00 3 0 3 0 0
.............................................................TTTTGATTGTTGCACAGAAAGC................................................................................................... 22 1 1 3.00 3 1 2 0 0
.............................................................TCTTGATTGTTGCTCGGAAAGC................................................................................................... 22 2 1 3.00 3 3 0 0 0
.............................................................TCTTGATTGTTGCTCAGAAA..................................................................................................... 20 1 1 3.00 3 1 2 0 0
.............................................................TTCTGATTGTTGCTCAGAAAG.................................................................................................... 21 1 1 3.00 3 0 1 2 0
.............................................................TTTTGATTGTTGCTCAGAACG.................................................................................................... 21 1 1 3.00 3 0 2 1 0
.............................................................TTTTGATTGTAGCTCAGAAAG.................................................................................................... 21 1 1 3.00 3 1 2 0 0
.............................................................TTTTGATTGTTGCTCAGAGAGCCT................................................................................................. 24 2 1 3.00 3 3 0 0 0
..............................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................. 23 1 1 3.00 3 3 0 0 0
.....................................................................................................CTTTCGAGCAATAATTGAAAC............................................................ 21 0 1 3.00 3 2 1 0 0
.............................................................TTTTGTTTGTTGCTCAGAAAGC................................................................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................TTTTGATTGTTGCTCAGT....................................................................................................... 18 1 2 2.50 5 0 5 0 0
.............................................................CTTTGATTGTTGCTAAGAAAGCC.................................................................................................. 23 2 1 2.00 2 2 0 0 0
.............................................................CTTTGATTGTTGCTCAGGAAGCC.................................................................................................. 23 2 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGTTGCTCAGAATG.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.............................................................TTTTGATTAATGCTCAGAAAG.................................................................................................... 21 2 1 2.00 2 0 2 0 0
.............................................................TTTTGATTGTTGCTCAGAGA..................................................................................................... 20 1 1 2.00 2 1 1 0 0
.............................................................TTTTGACTGTTGCTCAGAAAGC................................................................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................TCTTGATTGTTGCTCAGAAAGCCT................................................................................................. 24 2 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGTAGCTCAGAAAGC................................................................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAAC.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.............................................................TCTTGATTGTTGCTCAGAAGCC................................................................................................... 22 3 1 2.00 2 2 0 0 0
.............................................................CTTTGATTGTTGCTCAGAAGGCC.................................................................................................. 23 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGACGCTCAGAAAGCC.................................................................................................. 23 2 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGCTGCTCAGAAAGCCT................................................................................................. 24 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAGG.................................................................................................... 21 1 1 2.00 2 1 1 0 0
.....................................................................................................CTTTCGAGCAATAACTGAAACC........................................................... 22 1 1 2.00 2 0 2 0 0
................................................................TTATTGTTGCTCAGAAAGCC.................................................................................................. 20 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGCCTT................................................................................................ 25 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCACAAAGC................................................................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGATCAGAAAG.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.............................................................CTTTGATTGTTGCTCTGAAAGCC.................................................................................................. 23 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTAAGAAAGAA.................................................................................................. 23 3 1 2.00 2 0 2 0 0
..............................................................TTTCATTGTTGCTCAGAAAGCC.................................................................................................. 22 1 1 2.00 2 2 0 0 0
..............................................................TTTGATTGTTGCTCAGAAGCC................................................................................................... 21 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTTTTGCTCAGAAAGCCT................................................................................................. 24 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAAAGCC................................................................................................. 24 2 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................. 24 2 1 2.00 2 0 2 0 0
..............................................................CTTGATTGTTGCTCAGAAAGCC.................................................................................................. 22 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAGCCT.................................................................................................. 23 3 1 2.00 2 2 0 0 0
.............................................................TTTCGATTGTTGCTCAGAAAGCCT................................................................................................. 24 2 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................. 24 1 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGTCT................................................................................................. 24 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTCCTCAGAAAG.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.....................................................................................................CTTTCGAGCAATAATTGAAACCA.......................................................... 23 0 1 2.00 2 1 0 0 1
..................................................................ATTGTTGCTCAGAAAGCC.................................................................................................. 18 0 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGTTCAGAAAGCCT................................................................................................. 24 2 1 2.00 2 2 0 0 0
.............................................................TTTTGCTTGTTGCTCCGAAAGCC.................................................................................................. 23 2 1 2.00 2 2 0 0 0
.............................................................TTAAGATTGTTGCTCAGAAAGCC.................................................................................................. 23 2 1 2.00 2 0 2 0 0
...............................................................TTCATTGTTGCTCAGAAAGCC.................................................................................................. 21 1 1 2.00 2 1 1 0 0
.............................................................GATTGATTGTTGCTCAGAAAGC................................................................................................... 22 2 1 2.00 2 0 2 0 0
.............................................................TTTTGATTGAAGCTCAGAAAGCC.................................................................................................. 23 2 1 2.00 2 0 2 0 0
.............................................................TTTAGATTGTTGCTCAGAAAGC................................................................................................... 22 1 1 2.00 2 0 2 0 0
..............................................................TTTGATTGTTGCTCAGAAGGC................................................................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCTGAAAG.................................................................................................... 21 1 1 2.00 2 1 1 0 0
.............................................................TTCTGATTGTTGCTCAGAAAGCCT................................................................................................. 24 2 1 2.00 2 2 0 0 0
...............................................................TTAATTGTTGCTCAGAAAGCC.................................................................................................. 21 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTGGCTCAGAAAG.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.............................................................TTTTGATAATTGCTCAGAAAGCC.................................................................................................. 23 2 1 2.00 2 0 2 0 0
.............................................................TTTTGATTGTTGCTCAGACAG.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.............................................................CTTTGATTGTTGCTCAGAAA..................................................................................................... 20 1 1 2.00 2 0 2 0 0
.............................................................TTTTGATTGTTGCTCAGAACGA................................................................................................... 22 2 1 2.00 2 0 1 1 0
.............................................................TCTTGATTGCTGCTCAGAAAGCC.................................................................................................. 23 2 1 2.00 2 2 0 0 0
.............................................................TCTTGATTGTTGCTCGGAAAGCC.................................................................................................. 23 2 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAAT.................................................................................................... 21 1 1 2.00 2 0 2 0 0
.............................................................TTTTGCTTGTTGCTCAGAAAGC................................................................................................... 22 1 1 2.00 2 1 1 0 0
..............................................................TTTGATTGTTGCTCAGAA...................................................................................................... 18 0 1 2.00 2 0 1 0 1
.....................................................................................................CTTTCGAGCAATAATTGAA.............................................................. 19 0 1 2.00 2 1 1 0 0
.............................................................TTTTGATTGTTTCTCAGAAA..................................................................................................... 20 1 1 2.00 2 0 2 0 0
.............................................................TTTTGATTGTTGCTCAGAAAGG................................................................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCATAAAGC................................................................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................TTTTGATTGTTGCTCAAAAGC.................................................................................................... 21 3 13 1.85 24 14 10 0 0
.............................................................TCTTGATTGTTGCTCCGAAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................GTTTGATTGTTGCTCGGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGGTTGTTGCTCAGAAA..................................................................................................... 20 1 1 1.00 1 0 1 0 0
.............................................................TTTCGGTTGTTGCTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTCCTCAGAAGGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCAGCAAG.................................................................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTACTCAGAAAGCCT................................................................................................. 24 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCTCAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCAGAAGCCA.................................................................................................. 23 3 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCAGAGAACC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
..............................................................TCTTATTGTTGCTCAGAAAGCC.................................................................................................. 22 2 1 1.00 1 0 1 0 0
.............................................................TTTTGATTGTTGCTCGGGAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
...........................................................TCTTTTGATTGTTGCTCAGAAAG.................................................................................................... 23 2 1 1.00 1 0 1 0 0
.............................................................TCTTGATTGTTGCTCAGAAAACC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGAATGTTGCTCAGATAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TATTGATTGATGCTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TTTTGATTCCTGCTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TTTTCATTGTTGCTCAGAAAG.................................................................................................... 21 1 2 1.00 2 0 2 0 0
..............................................................TTTTATTGTTGCTCAGAAAGCT.................................................................................................. 22 2 1 1.00 1 0 1 0 0
...............................................................TTTATTGTTCCTCAGAAAGCC.................................................................................................. 21 2 1 1.00 1 0 1 0 0
.............................................................TTTTAATTGTTGCTCAGAAAGCCT................................................................................................. 24 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCATAAAG.................................................................................................... 21 1 1 1.00 1 0 1 0 0
.............................................................TTTTGATTGTTTTTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TTTTGATCGTTGCTCAGAAAGCA.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCACAGAAAG.................................................................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTCGCTCAGCAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TTTTGATTCTTGCTCAGAAAGCT.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TCTTGATTGTTTCTCAGAAGGCC.................................................................................................. 23 3 1 1.00 1 1 0 0 0
.............................................................TTTTGATGGTTGCTCAGAAAGCC.................................................................................................. 23 1 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCCGACAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................GATTGATTGTTGCTCAGAAAG.................................................................................................... 21 2 1 1.00 1 0 1 0 0
.............................................................TTTTGATTCTTGCTCAGGAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTGGCTCAGAAAGCC.................................................................................................. 23 1 1 1.00 1 0 1 0 0
.............................................................TTTTGATGGTTGCTCAGAAAGCCT................................................................................................. 24 2 1 1.00 1 1 0 0 0
.............................................................TTTTGAATGTTGCTTAGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGGTTGTTGCTCAGA....................................................................................................... 18 1 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCCGCAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
..............................................................TTTTTTTGTTGCTCAGAAAGCC.................................................................................................. 22 2 1 1.00 1 1 0 0 0
.................................................................TATTGTTGCTCAGAAAGCC.................................................................................................. 19 1 1 1.00 1 1 0 0 0
.............................................................CTTTGATTGTTACTCAGAGAGCC.................................................................................................. 23 3 1 1.00 1 1 0 0 0
.............................................................TTTCGATTGTTGCTCAGAACGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTCCTCAGAA...................................................................................................... 19 1 1 1.00 1 0 1 0 0
.............................................................TCTTGATTGTTGCTCAAAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGGTAAGAAAGAC.................................................................................................. 23 3 1 1.00 1 0 1 0 0
.............................................................TTTTGATTGTTGCTCAGC....................................................................................................... 18 1 1 1.00 1 0 1 0 0
.............................................................TTTTGATTGTTGCTCTGAAAGCA.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TTTTGATTGTTGCTTAGAAAGAC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGATCAGAAAGCA.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................CTTTGATTGCTGCTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
..............................................................TTTGATTGTTGCTCAGAAGGCC.................................................................................................. 22 1 1 1.00 1 1 0 0 0
..............................................................TTTGATTGTTGCTCAAAAAGCC.................................................................................................. 22 1 1 1.00 1 1 0 0 0
.............................................................TTTTGATTGTTGCTCAGTTA..................................................................................................... 20 2 1 1.00 1 0 0 0 1
................................................................TCTTTGTTGCTCAGAAAGCC.................................................................................................. 20 2 2 1.00 2 2 0 0 0
.............................................................TTTTGATTGTTCCTCTGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATTCATGCTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TTTTGAATGTTGTTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................GTTTGATTGTAGCTCAGAAAGC................................................................................................... 22 2 1 1.00 1 0 1 0 0
.............................................................TTTTGAACGTTGCTCAGAAAGCC.................................................................................................. 23 2 1 1.00 1 0 1 0 0
.............................................................TCTTGATTGTTGCTTAGAAAGCC.................................................................................................. 23 2 1 1.00 1 1 0 0 0
.............................................................TTTTGATATTTGCTCAGAAAGCCC................................................................................................. 24 2 1 1.00 1 1 0 0 0

Anti-sense strand reads

AATTCGGAAACCGATTCAAACCGACAAAATATATTCTCAAGGAAGTGCCTGTGAATATATTAAAACTAACAACGAGTCTTTCGGGAATAACATGGTCAACCGAAAGCTCGTTATTAACTTTGGTCTATTCACTAGGGGAGTAGCGACTTCTAAACTTTCGTGAAGCAAAACCATTCAATTCT

********************************************.((((((((((....(((((((((((((((.(((((((...((((...)))).))))))))))))))))))))))....))))))).)))..********************************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo
.....................................................................................................GAAAGCTCGTTGTTAGTTTT............................................................. 20 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_19:820192-820373 + dse-mir-315 Known_mirbase TTA---AGCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGCTG-TTTTATATAAGAGTTCCTT--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TA---CCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTGA---A----GA----T-----------------------TTGAAAGCACTTCGTTTTGGTAAGTTAAGA-------
droSim2 3l:18475632-18475816 + dsi-mir-315 Known_mirbase TTA---AGCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGCTGTTTTTATATAAGAGTTCCTT--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTTA---CCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTGA---A----GA----T-----------------------TTTACTGCATTTCGTTTTGGTAAGTTAAGA-------
dm3 chr3L:18854021-18854204 + dme-mir-315 Known_mirbase TTA---AGCCATTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGCTG-TTTTATATAAGAGTTCCTT--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTTA---CCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTGA---C----GA----T-----------------------TTCAAAGCACTTCGTTTTGGTAAGTTAAGA-------
droEre2 scaffold_4784:18670560-18670749 + der-mir-315 Known_mirbase TTA---ACCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTG-TTTTATATAAGAGTTCCTA--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTGA---A----GA----T-----------------------TTGACTGCATTTCGTGTTGGTAAGTAAACATGAAAAA
droYak3 v2_chr3L_random_055:2847-3029 + dya-mir-315-2 Known_mirbase TTA---ACCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTT-TTTTATATAAGAGTTCC-G--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTGA---A----GA----T-----------------------TTGACTGCGTTTCGTGTTGGTAAGTAAAAA-------
droEug1 scf7180000409471:636118-636301 - TTT-TACCCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TTTTGG----TTTTATATAAGAGCTCCAA--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTTA---ACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTTG---T----GA----T-----------------------TTAAATACATTCTGTGATGGTAAGTGAGC--------
droBia1 scf7180000302529:650372-650550 - TTA---CCCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT-CGG-----CTTATATAAGAGCTCCTC--A-----GCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTTA---ACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTTG---T----TA----T-----------------------GCCATCGCGTCTCGAGTTGGTAAGTGC--A-------
droTak1 scf7180000415184:198548-198731 - TTA---ACCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTA-CTTTATATAAGAGCTCCTG--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-CTTA---ACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATTG---T----TA----G-----------------------TTAATTGCGTCTTAAGATGGTAAGTACACA-------
droEle1 scf7180000490993:1762422-1762606 + TTA---ACCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTG-TTTTATATAAGAGTTCCTGG-A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAATG---T----GA----T-----------------------TTAATTAGACTTCAAAATGGTAAGTGAACA-------
droRho1 scf7180000758207:1435-1611 + TTT---ACCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTG-TTTTATATAAGAGTTTCTG--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA-TTT----ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT------GTGA----T-----------------------TTAAA-------CGAGATGGTAAGTGAACA-------
droFic1 scf7180000453824:210567-210749 + T-A---ACCCTTTGGCTAA------AG---------------------------------------------------------------------------------------------T-TT--GGTTC-TTTTATATAAGAGCTCCTG--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA-CTTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGAAAGTGAA----------T-----------------------TTTGATAC--TCTTATATGGTAAGTGAACA-------
droKik1 scf7180000302248:117478-117667 - ACA---ATCCTTTGGCTAA-------A---------------------------------------------------------------------------------------------T-TTTTGG----TTTTATATAAGAGTTCCTGGAA-----ATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA-TTTA---TCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTAT-GAAGTGTGA----T-----------------------TTAGT----TG-TTAAAGGGTAAGTGTT-TTCTAAAA
droAna3 scaffold_13337:18585458-18585622 - dan-mir-315 Known_mirbase CAA-T-AATCTTTGGCTGT-------A-----------------------------------------------------------------------------------------ATAGT-TT--GGCTT-TTTTATATAAGAGCTCCTA--A-----ATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATTA---TTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACATTTT--AAGTGTGA--------------------------------------------------------AA-------
droBip1 scf7180000396741:1773723-1773885 - ATA---ATC-TTTGGCTGA-------A-----------------------------------------------------------------------------------------ATTGG-TT--GGCTT-TTTTATATAAGAGATCCTA--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT-ATTT---AAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTTT--AATTGTGA--------------------------------------------------------AA-------
dp5 XR_group6:4103804-4103954 - dps-mir-315 Known_mirbase TGA---AAGTATAAG------------------------------------------------------------------------------------------------------------------------------------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAA---CCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT---AGTGTGA-------------------------------AATACTTGACTCAAAGGTAAGTGAAAA-------
droPer2 scaffold_9:2393012-2393168 - dpe-mir-315 Known_mirbase CCA--------TTGTGAAA-------G---------------------------------------------------------------------------------------------T-AT-------------------------AA--A-----CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAA---CCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT---AGTGTGA-------------------------------AATACTTGACTCAAAGGTAAGTGAAAA-------
droWil2 scf2_1100000004768:104735-104943 + dwi-mir-315 Known_mirbase TTA---TTTTTTTGGC-AA-------G-----------------TGAAACTAAATGTTAAGTGTAAAGTGTTAATGGTCCTTTAGCATCATCATTTGGTAAACTGAATGTTTGTGAATTGGTTT--------GCTTATTT------GCCCA--T-----CTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTTA---TCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCA----------------------------------------------------------------------------------
droVir3 scaffold_13049:18083586-18083723 - dvi-mir-315a Known_mirbase CCA---AACATTTT-CCAAGTTACAACTCCATTTCC---------------------------------------------------------------------------------------T--------TCCTACCT------CACAA--A-----ACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTCA---ATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCC---------------------------------------------------------------------------------------
droMoj3 scaffold_6680:23648496-23648677 - dmo-mir-315 Known_mirbase ATAAT-AACCGTCAGCC-------------------------------------------------------------------------------------------------------------------------------------A--A-----ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAA---TTTAACTTAACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTT------GTCAAAAATTTCAAAAAAATTAAAATACAAAATTAACTACAAT----TGAGGTAAGTAAATA-------
droGri2 scaffold_15110:24135495-24135639 - dgr-mir-315 Known_mirbase CTA-T-AATTTATGGTTA-----CTAGTGTGTTCTCCTGATGCCT---------------------------------------------------------------------------------------------GAAACAGCC---A--ACTACTATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTTG---ACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCC---------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TTA---AGCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGCTG-TTTTATATAAGAGTTCCTT--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TA---CCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCATCGCTGA---A----GA----T-----------------------TTGAAAGCACTTCGTTTTGGTAAGTTAAGA-------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23153466.00534661131833837514795
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22113083.0013083337572855690
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2113628.00362895810532508
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................241907.0090725634266
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221334.0033410228735
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231290.002903166220
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201262.002625037220
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241167.001670110957
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................221165.001651428663
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221164.001640315146
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231137.00137037163
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................191118.001181010107
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................181115.001150014101
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21185.0085207211
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22161.0061021247
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21145.004500378
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................24137.0037012313
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................20116.001610123
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................21115.001511112
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC...................................................................................................................................................21210.502100192
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20110.00101072
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................2318.0080035
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................2317.0070025
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2417.0070061
..............................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC....................................................................................................2117.0070133
.............................................................................................................................................................................AATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2515.0050032
................................................................................................................................................................................TTTGATTGTTGCTCAGAAA....................................................................................................................................................1914.0040031
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAT....................................................................................................................................................2014.0040004
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAG...................................................................................................................................................1914.0040031
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2414.0040013
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................2413.0030003
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAT.....................................................................................................................................................1913.0030003
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................1913.0030030
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2313.0030030
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC.....................................................................................................2113.0030021
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1822.5050005
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................2112.0020002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................................................................2412.0020002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................2412.0020011
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACCA...................................................................................................2312.0021010
....................................................................................................................................................................................ATTGTTGCTCAGAAAGCC.................................................................................................................................................1812.0020020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................2112.0020002
................................................................................................................................................................................TTTGATTGTTGCTCAGAA.....................................................................................................................................................1812.0021001
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA.......................................................................................................1912.0020011
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................2212.0020020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGC......................................................................................................................................................1811.0010001
droSim2
TTA---AGCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGCTGTTTTTATATAAGAGTTCCTT--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTTA---CCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTCTCATCGCTGA---A----GA----T-----------------------TTTACTGCATTTCGTTTTGGTAAGTTAAGA-------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................231479570.004795701806677432844478304086481209518262386521111135
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22159709.005970931932134236721612434841834477102182307226
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................21112280.00122808981332530709931223611511229013119
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................24111972.0011972547726631410021110014000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................2011845.00184515144175146360342701600001
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................2411134.00113439815870813510010300000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................1811064.001064973542003111630200000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241907.0090722202333002292813720122210000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................221851.008512320205212386000011300000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231828.008284331297000332261002600000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231656.006565031129000001202000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................191570.005704882291125011560200000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................211420.0042040331100011000010000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221405.0040514702321200001201100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................241354.00354136021700010000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221186.00186146015000111522400000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................211174.001749407810000100000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGA........................................................................................................181167.001671000416110000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA.......................................................................................................191141.001410000413700000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGG......................................................................................................................................................181140.001401360400000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21184.00845602400100010100001
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................23178.00784003400000100300000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22175.0075590500010100900000
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................20169.00692604300000000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAA......................................................................................................20164.0064000026200000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................18244.0088862000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAT....................................................................................................................................................20142.0042411000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................21138.0038320600000000000000
....................................................................................................................................................................................ATTGTTGCTCAGAAAGCC.................................................................................................................................................18135.00351102300000001000000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20133.00331701400000100100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCAA...............................................................................................................................................25131.00310000001321510000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................22128.0028172300000100500000
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................24118.0018211400000010000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................20117.0017140100000010100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................21114.0014130000010000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAT.....................................................................................................................................................19114.0014130100000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................24112.001220100040102200000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCAAA..............................................................................................................................................26111.001100000050510000000
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................19111.001140400000011100000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................23110.001060400000000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC.....................................................................................................21110.001020000800000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGC......................................................................................................................................................18110.0010100000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................23110.001020400000210100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGATT....................................................................................................................................................2027.5015150000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAG.......................................................................................................................................................1717.00700000010120000102
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAAA...............................................................................................................................................2517.00700000010600000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAC....................................................................................................................................................2016.00660000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGACT....................................................................................................................................................2026.0012120000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................2026.001250000006100000000
......................................................................................................................................................................................................CTTATTG-TTTA---CCAGTTGG..........................................................................................................................1915.00500200000010200000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2215.00530200000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................2315.00530100100000000000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAG...................................................................................................................................................1915.00540000000000100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT...............................................................................................................................................2515.00510400000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAATT...................................................................................................................................................2124.50980000001000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2414.00430100000000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATT..........................................................................................................1614.00400000000220000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACCA...................................................................................................2313.00300000300000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGATC....................................................................................................................................................2013.00330000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................................................................2413.00310200000000000000
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGC..................................................................................................................................................1913.00300200000010000000
.....................................................................................................................................................................................TTGTTGCTCAGAAAGCCT................................................................................................................................................1813.00300300000000000000
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCCT................................................................................................................................................2113.00310200000000000000
dm3
TTA---AGCCATTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGCTG-TTTTATATAAGAGTTCCTT--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTTA---CCAGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCCCTCAACGCTGA---C----GA----T-----------------------TTCAAAGCACTTCGTTTTGGTAAGTTAAGA-------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................231106956.001069560000310002944131341003112140000205448431527638375800000010301200311210004110000000000000000086471672449346300131458570345722633631122957241201155524231461810143843165075377430488203727323535173120000000000531718117331100002000020110203000142517830147612155124593617379748155154726863080000024407316541100047179400000200000002002220281397362406210930000100548638952154175864122312115031806172893813438242636164616462118792442124010302483262402322764235145024393946969962851829612921518136342053075332609571956103282016371134255482157233299972334844420
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22128689.00286890000120000144223010004000020116152931434461010000002000002010000000000000000000000000564280011180001061405626218924452350003000080715041214730112800152214852141232116715200000000001042211000010200002001050000053860805011893673803434217552101115110200010727115171000619300000000000000006102613321255042301000020057242604867135485502657735124175315912433114915335583521041330001226007110716521219140748336480266022001633138236070012934542018714212012893123210213230213418160
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................21115419.001541900001100004117201003200005011421526925330800010001000000000000000000000000000000000111181014000214150406511672025239000500013227000951422404219420888118810000000000206000000020000102300000003344090297341722831629324271689135000004023434000001402220000000000000000210114041347900092000000024719602536314781292217057290223103003250163242400112040302050189731338892130111980553203010320731171770802271441601447070014641492931666840
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................2216674.0066740000400000060001100000001101525358813351350000000000000000000000101000000000000000004340911583300050324034441402491130001000031530002301102010416100000000006140000000100000000070400020136001943461675446411358264180369223191000135016100040530000000000000100020200220000100000000795201504002802010000000000010310000020000001000281104101110321019010000080440100017200030000013701100200010
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................2013528.003528000040000014000000000002000116153156004000000000000000000000100000000000000000000110100000000025117180100457800010000600001564140951105545862000000000030100000000000000040000000228268014711871878164122405321200000222213100030000000000000000000001101141000000010000181605511900523040100025000100041024000000000000110054835514011611000000162714100100610000001006500100000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCATC...............................................................................................................................................2513075.00307500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002210865000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2411079.0010790000100023031000000000000000000000000000000010000000000000000000000000000000001000060000012109200014440001000113020011130110321003101000000000010100000003000000000000000670610962327125100000880200002080000000000000000002000022200000000000045440190170011163226000271000001001020000000000000000242719214306000000001104801010230401204010114334870621200
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231943.00943000011000301100000000000000000000000000000000000000000000000000000000000000000000001000000010101000021000000002000005901901343606045000000000000000000000000000000000000122001410131719022129100000321000000104000000000000000000000100330000000016800201501201800915070700136000010020100000100000000000248696167035530010007071200000015110002000010700000110000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241817.00817000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000600000011200000000101000330101150100200000000000020000000100000000000000095010088050801000000093140000401000000000000000000000000622400020000470022130190700470212000810000003000100000000000000002833343341332100110071126020001900011000005011200000100
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221739.0073900001000000100000010000000000000000000000000000000000000000000000000000000000000000000000010000100000200000000000000200607723163270000000000000000000000000000000000001215013004190131261412000002520200000010000000000000000001020018000000000000420020000061404010002100000111000000000000000000017360576505410000002401110000000200000002008510300000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................191654.006540000000000000000000000010000000000000000000000000000000002000000000000000000100000000000000303800010126000100004000001100101000120121100000000000000000000000000002000000037390150092017036166000000301100000100000000000000000000000000130000000010005500110200380200000700000002000100000000000000003740466003101000004043000000000000000002900000001000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................181578.005780000000000000000001000000001102401000000000000000000000000000000000000000000001000000000000300700011011000000003000013201001017168001100000000000000000000000000000000625010114402120015200000110000000000000000000000000000001000400000000000023022500001301020001510000003000000000000000010008670501100631100000503301000010000000000100000001000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231554.005540000000000030000001000000000000000000000000000000000000000000000000000000000000000010000000000000000050000000010100123050111603142000000000000100000000000000000000000711017004220240322020000071010000002000000000000000000000000500000000000026900151800313010300012000000010001000100000000000126232426164311000004258000001922000000007200100201010
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221428.0042800000000010300000100000000012526261100000000000000000000000000000000000000000000000001100000000000000020000000001100014204076111304100000000000000000000000000002000000019200234115306282554300000300010000000000000000000000000010013000100000000117003010013000000020000000000000000000000000000128812151200000000000000000100000000001100000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC.....................................................................................................211400.00400000000000000000000000000000923214100000000000000000000000000000000000000000002210200020002011021000002100000000010000000000000000100000000000100000000000000000000000001510718905371213831118000000000000000000000000000001000001000000000010000054000000000000000000000300003100000000000000001759524001000001002000000600000000001100000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................241314.003140000000010010000000000000001001200000000000000000000000000000000000000000000000000013000000206100001010000000000100013000014021310000000000001000000000000000000000003103018201050110000001400000001000000000000000000000000005000000000000201201701310160000001120000000010000000000000000000121181028400000000202100000030000000000900000010000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................221227.002270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000120000000000000020030003000220000000000000000000000000000000000001408001140100216000000410100006030000000000000010001000005000000000000110150300130000010800000000000000000000000000001281322017200000002142000000600000000002511000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................211219.00219000000000001001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000012012040001053000000000000000000000000000000000000212801200880701103610000016000000000000000000000000000000000080000000100000003200000300000004000000000000000000000000000028690000000000100000000000000000000100000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGA........................................................................................................181130.001300000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000013000000000010001200000000030000000000000000000000000000000000000341003101510470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002108110411000000300100000000000000000000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................211122.0012200000000000100000000000000001091010000000000000000000000000000000000000000000000000000000000000100000000000000000000101020032120000000000000000000000000000000000000003707002110912010000003000000000000000000000000000000000010000000000001000000001001000002000001000000000000000000000058280400000000000000000000000000000600000001000
......................................................................................................................................................................................................CTCATTG-TTTA---CCAGTTGG..........................................................................................................................191112.001120000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000300000100000000000000002020011020020000000000000000000000000000000000004704000101385929000000000000000000000000000000000000000000000000000004300000001000000000000000000000000000000000000024132300000000000000000000000000000100000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................23183.00830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000020000005000100000000000000000000000000000000000001001000302010251000001000000000100000000000000000000000030000000000001200101001200000001000000000000000000000000000016381400000000001100000020000100000500001000000
..............................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC....................................................................................................21181.008100000000000000000000000000030000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000001000000000000000000000000000000000000006038400130132602000000000000000000000000000000000000000010000000000003000000000000000000000000000000000000000000000012010100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAA......................................................................................................20166.00660000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000300000110000000000000000000000000000000000000000000000000000000000000001220020026111730000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000023321000000000000000000000000000000100000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................20161.0061000020000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000240300182712030000000000000000000000000000000000000000000000000000000001100001000000000000000000000000000000000000044160101000000000000000000000000000300000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA.......................................................................................................19157.00570000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000020000000000000020000000000000000000000000000000000000000000000001180000011015300000000000000000000000000000000000000000010000000000003000000000000000000000000000000000000000000000103340201000000100000000000000000000200000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................21151.0051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000053000000000000000000000000000000000000210200000100000000001000000000000000000000000000000000000000000000001003302000202000001000000000000000000000000000017290000000000000000000000000000000200000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCAA...............................................................................................................................................25150.00500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000002420001000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGT........................................................................................................18244.0088000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000212022205130112402000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000054280000000000000000000000000000000000000000000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21144.0044000000000000000000000000000001531000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000100010000000000000000000000000000000000000320000031501010000002000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000001111200000000000000000000000000000100000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................24143.00430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000001000000100000020000000000000000000000000000000000310000000010000000000001000000000000000000000000000000000000001010000000000000000000000000000000010000000100
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACA....................................................................................................22138.0038000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000370002015130904000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAT.....................................................................................................................................................19129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000003001010001011000000000000000000000000000000000000010010000001000000000000000000000000000000000000000000000000000000000000001000100000001000000010000100000000000000012220000000000000000000000000000000500000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................22127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000100000000000000000000000000000000000000000210000020003020000001000000000000000000000000000000000000000000000001000100002000000004000000000000000000000000000012010000000000000000000000000000000000000000000
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................24126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000004400000000000000030000000000100000000000000000000000000000000000000000000000000000020100000000010000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000011000400000000001000000000000000000100000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................21126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000550000010100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012140200000000001000000000000000000000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAA....................................................................................................................................................19124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000220300060601010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................20122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000220200010104030000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010020000000000000100000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAT....................................................................................................................................................20122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000160100000001010000004000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000030000000000100000000000000000000100000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAC....................................................................................................................................................20122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000003014000000000000000000000000000000000000120000000101020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................................................................24120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000132000100000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCATC...............................................................................................................................................24119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................23119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000000000100010001010000001000000000000000000000000000000000000000000000001000100000000000001000000000000000000000000000012130000000000000000000000000000000100000000000
droEre2
TTA---ACCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTG-TTTTATATAAGAGTTCCTA--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCT-ATTA-TCTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACGCTGA---A----GA----T-----------------------TTGACTGCATTTCGTGTTGGTAAGTAAACATGAAAAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23143176.0043176374215151547402089156310
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2219235.009235589764929651467300
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2113617.00361719233381252530870
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231562.0056226261315140
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................241467.0046749177342880
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201341.003410234932930
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................221309.00309141761445960
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221245.002450226232120
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231218.00218184601990
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................181148.00148001101460
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221128.001283929742470
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................191122.00122019401080
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241107.00107131592770
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................23195.0095013011800
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................24143.004303134050
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21131.003152110220
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21130.0030313000140
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22130.003010100280
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................21123.002311820110
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................21120.002000400160
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC.....................................................................................................21115.00151121190
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20111.001100010100
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................20111.00112001080
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGA........................................................................................................18110.001000000100
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2419.0090501030
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1818.0080000080
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................2417.0070001060
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................2216.0060201030
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................1916.0061101030
..............................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC....................................................................................................2116.0060500010
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAG...................................................................................................................................................1915.0050000050
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2315.0050300020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................2315.0050000050
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAATA..................................................................................................................................................2215.0050100040
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAA.......................................................................................................1915.0050010040
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAA......................................................................................................2015.0050010130
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................2014.0040000040
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2414.0040000040
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................................................................2414.0040000040
................................................................................................................................................................................TTTGATTGTTGCTCAGAAA....................................................................................................................................................1913.0030000030
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC...................................................................................................................................................2113.0030000030
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................2113.0030010020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................2013.0030000030
.............................................................................................................................................................................AATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2513.0030100020
droYak3
TTA---ACCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTT-TTTTATATAAGAGTTCC-G--C-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATCCTTACAACATTGA---A----GA----T-----------------------TTGACTGCGTTTCGTGTTGGTAAGTAAAAA-------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................232238056.504761134691628418397761771423694581180
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22210712.502142569414121561536193565900210
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2422553.505107251932344163146130000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2121304.5026091696120610416442751230
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................2221011.00202237719381422400000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................242510.501021221078951500000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................222459.5091940486861000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................232192.5038510402292113000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................202170.003402501105195311000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................232119.502398022522200000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................232110.502211090542043400000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................212103.0020615019000100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................18298.50197169010101700000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................24289.501791000351762100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................19268.50137100251101900000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................22265.0013048146282410000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................21248.5097940101100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................24233.5067650200000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21218.00361302020100000
..............................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC....................................................................................................21216.0032003100100000
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................20211.0022701400100000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22210.002050421800000
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2428.5017011500100000
....................................................................................................................................................................................ATTGTTGCTCAGAAAGCC.................................................................................................................................................1827.0014401000000000
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................1926.5013001300000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGG......................................................................................................................................................1836.3319190000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2325.001040600000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1825.001080001100000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................2024.00850300000000
droEug1
TTT-TACCCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TTTTGG----TTTTATATAAGAGCTCCAA--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTTA---ACAGTCGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCCTACAACGTTTG---T----GA----T-----------------------TTAAATACATTCTGTGATGGTAAGTGAGC--------SizeHit CountTotal NormTotal
No Reads
droBia1
TTA---CCCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT-CGG-----CTTATATAAGAGCTCCTC--A-----GCGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-TTTA---ACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTTG---T----TA----T-----------------------GCCATCGCGTCTCGAGTTGGTAAGTGC--A-------SizeHit CountTotal NormTotal
No Reads
droTak1
TTA---ACCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTA-CTTTATATAAGAGCTCCTG--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTA-CTTA---ACAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGATTG---T----TA----G-----------------------TTAATTGCGTCTTAAGATGGTAAGTACACA-------SizeHit CountTotal NormTotal
No Reads
droEle1
TTA---ACCCTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTG-TTTTATATAAGAGTTCCTGG-A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTCACAACGAATG---T----GA----T-----------------------TTAATTAGACTTCAAAATGGTAAGTGAACA-------SizeHit CountTotal NormTotal
No Reads
droRho1
TTT---ACCTTTTGGCTAA-------G---------------------------------------------------------------------------------------------T-TT--GGTTG-TTTTATATAAGAGTTTCTG--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTAATA-TTT----ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGTTTT------GTGA----T-----------------------TTAAA-------CGAGATGGTAAGTGAACA-------SizeHit CountTotal NormTotal
No Reads
droFic1
T-A---ACCCTTTGGCTAA------AG---------------------------------------------------------------------------------------------T-TT--GGTTC-TTTTATATAAGAGCTCCTG--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTA-CTTA---ACAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACGAAAGTGAA----------T-----------------------TTTGATAC--TCTTATATGGTAAGTGAACA-------SizeHit CountTotal NormTotal
No Reads
droKik1
ACA---ATCCTTTGGCTAA-------A---------------------------------------------------------------------------------------------T-TTTTGG----TTTTATATAAGAGTTCCTGGAA-----ATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTT--TA-TTTA---TCAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACGTTAT-GAAGTGTGA----T-----------------------TTAGT----TG-TTAAAGGGTAAGTGTT-TTCTAAAASizeHit CountTotal NormTotal
No Reads
droAna3
CAA-T-AATCTTTGGCTGT-------A-----------------------------------------------------------------------------------------ATAGT-TT--GGCTT-TTTTATATAAGAGCTCCTA--A-----ATGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATTA---TTAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTGACAACATTTT--AAGTGTGA--------------------------------------------------------AA-------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23114944.001494459536947619801366924
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2217154.00715427458207894585510
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2111857.001857152017568381199
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................241492.0049221612423417
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231245.00245003373202
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................221244.0024413178023228
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221186.00186010386141
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201179.00179513544112
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231127.0012701040977
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................18191.009100056035
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................19184.008413022157
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................24168.006804316144
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................22164.006451900040
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22137.00370009028
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21129.00291202024
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................21118.00180002016
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................21116.00160000016
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21116.00160500011
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20112.00120100011
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................20111.0011200108
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................24110.0010070120
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2419.009000216
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC.....................................................................................................2119.009030231
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................2319.009000108
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC...................................................................................................................................................2118.008000008
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................2318.008010106
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................2115.005000203
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................2015.005000104
..............................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC....................................................................................................2115.005040100
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2414.004020002
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................1914.004020002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAACT...................................................................................................................................................2114.004000301
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAT....................................................................................................................................................2014.004000103
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAT.....................................................................................................................................................1923.006000402
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................2413.003000003
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1832.678000404
.....................................................................................................................................................................................TTGTTGCTCAGAAAGC..................................................................................................................................................1612.002000200
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGA........................................................................................................1812.002000101
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................2212.002000002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAAA..................................................................................................................................................2212.002000002
................................................................................................................................................................................TTTGATTGTTGCTCAGAAA....................................................................................................................................................1912.002100001
droBip1
ATA---ATC-TTTGGCTGA-------A-----------------------------------------------------------------------------------------ATTGG-TT--GGCTT-TTTTATATAAGAGATCCTA--A-----ACGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAT-ATTT---AAAGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATCCTTACAACATTTT--AATTGTGA--------------------------------------------------------AA-------SizeHit CountTotal NormTotal
No Reads
dp5
TGA---AAGTATAAG------------------------------------------------------------------------------------------------------------------------------------------------CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAA---CCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT---AGTGTGA-------------------------------AATACTTGACTCAAAGGTAAGTGAAAA-------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23180302.00803022358451781435666021793213815131
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22116662.001666251422647491187266365410827
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2111512.00151214047162033971202794
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................241488.0048815116187028000250
.............................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGCC....................................................................................................221364.0036403301203280000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201222.0022209341248100145
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221206.0020606273117300050
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................231184.0018401556191000102
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241140.0014006270301502060
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231130.001300164301800071
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................241117.00117021013400007
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................241112.00112007985400016
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................23184.00841030916700021
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................19179.0079231212500045
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................22148.0048018381340011
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21143.0043010110100030
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................18140.004010001800030
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................23137.003700281520001
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21136.0036021632001012
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22123.00230103681004
.............................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGC.....................................................................................................21115.00150083220000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20113.001300012000010
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................2117.0070110020003
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................2017.0070011010004
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2216.0060200100003
..............................................................................................................................................................................................................................TTTCGAGCAATTATCAAAGCC....................................................................................................2115.0050221000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................2415.0050000000005
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................2215.0050000500000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................2015.0050300010001
.............................................................................................................................................................................ATTTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2314.0040000000004
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAA....................................................................................................................................................2114.0040000000004
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAA.....................................................................................................................................................2014.0040000000004
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................1914.0040000200002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGTA.................................................................................................................................................2313.0030000100002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................................................................2413.0030000100002
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................2313.0030010000002
...............................................................................................................................................................................TTTTGATTGTTGCTCAG.......................................................................................................................................................1713.0030000000003
droPer2
CCA--------TTGTGAAA-------G---------------------------------------------------------------------------------------------T-AT-------------------------AA--A-----CCGGACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAA---CCAGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATCCCAACAACATTTT---AGTGTGA-------------------------------AATACTTGACTCAAAGGTAAGTGAAAA-------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23143819.0043819386125114371830183653
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2216166.00616645251543666450719
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2111577.00157766185142741020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2411055.00105594501042553
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................231169.0016916204300
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................241163.0016315502240
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201132.00132481245360
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231104.00104341531321
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................24182.00828000020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................24178.0078420516150
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................23168.0068140720270
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................19168.0068120121340
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................18166.0066190217280
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................22138.00382572310
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................22136.003610220130
.............................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGCC....................................................................................................22132.0032639860
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................24126.00262500010
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22125.00254011460
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21114.00141210100
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................20112.00121200000
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2219.009800100
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................2317.007400300
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................2017.007210310
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2116.006100311
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................2115.005201020
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAG...................................................................................................................................................1915.005300002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................2115.005000230
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................2414.004300010
.............................................................................................................................................................................................................................CTTTCGAGCAATTATCAAAGC.....................................................................................................2114.004000130
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAAA....................................................................................................................................................2113.003200010
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGAA.....................................................................................................................................................2013.003300000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAT.....................................................................................................................................................1913.003000210
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................2213.003200010
..............................................................................................................................................................................TTTTTGATTGTTGCTCAGA......................................................................................................................................................1913.003100020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................2012.002000020
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2412.002000011
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................2112.002000020
.............................................................................................................................................................................ATTTTTGATTGTTGCTCAGAA.....................................................................................................................................................2112.002200000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT...............................................................................................................................................2512.002200000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................2321.503001200
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1831.334100030
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2311.001100000
.............................................................................................................................................................................ATTTTTGATTGTTGCTCAGA......................................................................................................................................................2011.001100000
droWil2
TTA---TTTTTTTGGC-AA-------G-----------------TGAAACTAAATGTTAAGTGTAAAGTGTTAATGGTCCTTTAGCATCATCATTTGGTAAACTGAATGTTTGTGAATTGGTTT--------GCTTATTT------GCCCA--T-----CTGGACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTTA---TCAGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGCCTGTCA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................231312741.003127412254352671405651730382
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22156057.00560572893854261389613143
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................21115687.00156878707232325884346
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2419781.009781840953595769
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................2414089.004089345250400232
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................2011774.001774129520110367
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................1811077.001077102500844
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231801.0080131202186301
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241590.0059032420140124
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................191520.00520418001983
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231479.00479341006375
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221353.00353980049206
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221352.003521641718486
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAACC....................................................................................................221310.003101285113937
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................241215.002152110022
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................211215.0021519600217
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................211149.0014980103236
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................211114.0011425502955
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22148.004820001216
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20147.00471300826
...............................................................................................................................................................................TTTTGATTGTTGCTCAGG......................................................................................................................................................18245.5091910000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................20143.0043411532
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................20143.00433200110
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................23140.0040290065
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT...............................................................................................................................................25133.0033280023
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................21122.0022180031
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................23121.0021120027
....................................................................................................................................................................................ATTGTTGCTCAGAAAGCC.................................................................................................................................................18120.0020160022
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAG...................................................................................................................................................19118.0018300411
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................19112.001221018
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................24111.001120081
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................23111.001170031
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................21110.001050041
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................22110.001050104
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAT................................................................................................................................................2418.00840004
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................2018.00860011
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAGC...................................................................................................................................................2128.001600079
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAT....................................................................................................................................................2018.00860002
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCCCT...............................................................................................................................................2217.00750002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGAA.................................................................................................................................................2317.00710015
.............................................................................................................................................................................AATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2517.00700052
................................................................................................................................................................................TTTGATTGTTGCTCAGAAA....................................................................................................................................................1917.00710006
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGC..................................................................................................................................................1916.00620022
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAT.....................................................................................................................................................1916.00640011
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2416.00610014
.............................................................................................................................................................................................................................CTTTCGAGCAATAATTGAAAC.....................................................................................................2116.00610032
..................................................................................................................................................................................TGATTGTTGCTCAGAAAG...................................................................................................................................................1815.00510004
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCA...............................................................................................................................................2515.00530020
......................................................................................................................................................................................................CTCATTACTTTA---TCAGTTGG..........................................................................................................................2015.00500050
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2214.00430001
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCC...............................................................................................................................................2514.00440000
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2314.00400040
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCAA................................................................................................................................................2414.00410012
...............................................................................................................................................................................TTTTGATTGTTGCTCAGC......................................................................................................................................................1814.00440000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................2214.00420002
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1873.8627260001
..............................................................................................................................................................................................................................TTTCGAGCAATAATTGAAACC....................................................................................................2113.00300021
droVir3
CCA---AACATTTT-CCAAGTTACAACTCCATTTCC---------------------------------------------------------------------------------------T--------TCCTACCT------CACAA--A-----ACGGACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTG--CA-TTCA---ATACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23175030.00750303192055436350162015000000019313089176103715993405321118660100000041261618006819403436159346389197161861556339353095191522014136128203494763298343394455129177216206218
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2217885.00788544309481856128000000054502557361602074120331211000002011310000101118361844371915632074268250011812166611849327549222194342
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2415009.00500910144202300020000000220322024000000000000001015811010243471071911502452276768371872884000003514152641372528164
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2111758.00175818725372125100000046271735195113440111530030000001300000000100300011188249930001131423412101603299
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201450.0045021702300100000002423132511801433011010103000000000000000000010001000498000010002200010103
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................241267.0026701470670000000000000000000000000000000000000000000002245721001353000000121000020102
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................181198.00198418100000000000000011000000000000100000000000000000000000000015000010010000100010
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231164.001641980210000000000001010011000000000000000000000000000101010009317000010031002000001
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................191150.00150173120000000000642100002000100100000000000010000000000000001245000000020400001000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241126.0012604901000000000002001012020000000000000000010000000000011000142815000000021220100000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................221114.00114024362000000000010030000200000000000000000000000000001001000365000000000011000010
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231100.001000410400000000001211110030001000000000000000000000000201000021224000011000000001000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCG................................................................................................................................................24179.0079037000000000000000000000000000000000000000000000000040200013311000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................22161.0061113060000000000022210003000000000000000000000000000000100000030000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAA...................................................................................................................................................21154.005403701000000000041111100200010000000000000000000000000000000001000000000001000011
...............................................................................................................................................................................TTTTGATTGTTGCTCAGG......................................................................................................................................................18134.003403400000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................21133.003316021000000000001000000000000000000000000000000000000000100110000000010000000000
.............................................................................................................................................................................................................................CTTTCGAGTAATAATCGAAACC....................................................................................................22132.003201029000000000000001100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................23118.001803011000000000000000000000000000000000000000000000001000000012000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22116.00160301000000000000000000100000000000000000000000000000000000036100000000000000100
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21112.00120602000000000000000000000000000000000000000000000000000000022000000000000000000
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2419.0090001000000000000000000000000000000000000000000000110013000100000000000100000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGT......................................................................................................................................................1817.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAT...................................................................................................................................................2117.0070000000000000001100000000000000000000000000000000000000000032000000000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2316.0060200000000000000000000000000000000000000000000000001000000210000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................2214.0040300000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................2014.0040301000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAC...................................................................................................................................................2114.0040200000000000000000000000000000000000000000000000000000000002000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAT....................................................................................................................................................2014.0040200000000000000000000000000000000000000000000000000000000002000000000000000000
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................2013.0030000000000000000001000100000000000000000000000000000000000010000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAAA..................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000011000000000000010000
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000001000000200000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCTT................................................................................................................................................2413.0030200000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................1912.0020001000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAG....................................................................................................................................................2012.0020000000000000000001000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCCT...............................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000200000000000000000000
droMoj3
ATAAT-AACCGTCAGCC-------------------------------------------------------------------------------------------------------------------------------------A--A-----ACGGACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTAA---TTTAACTTAACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATCCAAACATCATTTT------GTCAAAAATTTCAAAAAAATTAAAATACAAAATTAACTACAAT----TGAGGTAAGTAAATA-------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................231394773.003947732381125014953434378156200
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................22124432.002443210324982947242074370
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2412114.00211422013563180211
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................2412096.0020961404820430
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2111779.0017796423135475533738
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................2211462.00146219233814072
.............................................................................................................................................................................................................................CTTTCGAGTAATAATCGAAACC....................................................................................................2211123.001123410111170
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................231347.0034713313372549
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGCC.................................................................................................................................................211291.0029155022790
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................201220.0022021860109166
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCA................................................................................................................................................241201.0020134711231143
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCG.................................................................................................................................................231174.0017404011690
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGCCC................................................................................................................................................231111.0011104111050
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCA.................................................................................................................................................231102.00102030931311
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGA..................................................................................................................................................221100.0010014922613
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAGC..................................................................................................................................................21195.009511601770
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAA.....................................................................................................................................................19184.008483204751
...............................................................................................................................................................................TTTTGATTGTTGCTCAGA......................................................................................................................................................18180.008003333860
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................23153.00530424430
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGT..................................................................................................................................................22149.00492882281
..............................................................................................................................................................................ATTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................24148.00480100470
..............................................................................................................................................................................................................................TTTCGAGTAATAATCGAAACC....................................................................................................21126.00260000260
.................................................................................................................................................................................TTGATTGTTGCTCAGAAAGC..................................................................................................................................................20121.00212000190
...................................................................................................................................................................................GATTGTTGCTCAGAAAGCC.................................................................................................................................................19121.00210301170
..................................................................................................................................................................................TGATTGTTGCTCAGAAAGCC.................................................................................................................................................20117.00171000160
.............................................................................................................................................................................................................................CTTTCGAGTAATAATCGAAAC.....................................................................................................21112.00120010110
....................................................................................................................................................................................ATTGTTGCTCAGAAAGCC.................................................................................................................................................18111.0011111080
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGG..................................................................................................................................................22110.0010070030
......................................................................................................................................................................................................CGTAA---TTTAACTTAACATGG..........................................................................................................................2019.009000090
................................................................................................................................................................................TTTGATTGTTGCTCAGAAAG...................................................................................................................................................2018.008600200
droGri2
CTA-T-AATTTATGGTTA-----CTAGTGTGTTCTCCTGATGCCT---------------------------------------------------------------------------------------------GAAACAGCC---A--ACTACTATGGACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTT--CA-CTTG---ACACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATCC---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCC.................................................................................................................................................23121.0021813
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGC..................................................................................................................................................2214.00413
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAA....................................................................................................................................................2012.00211
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCCT................................................................................................................................................2411.00101
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAG...................................................................................................................................................2111.00101
...............................................................................................................................................................................TTTTGATTGTTGCTCAGAAAGCT.................................................................................................................................................2311.00101

Generated: 10/20/2015 at 07:37 PM