ID:

dse-mir-309

 Coordinate:

scaffold_1:13063938-13064006 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.6 -17.5 -17.3

Flybase annnotation

pre_miRNA [Dsec\mir-309-RM]; utr3 [utr3_minus_3620]; miRNA [Dsec\miR-309-RA]; pre_miRNA [Dsec\mir-3-RM]; utr3 [utr3_minus_3619]

No Repeatable elements found

Sense Strand Reads

AGTGTGAGCATCCAGCAGTGAAAAGCAATGTCTTAAAGTTTGGAACAGCAATTATACGACAAACCTTGTTCGGTTTTGCCAATTTCCAAGCCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAACGACGACCAGCTAATTGTGAATCACCAAAGGTCCCGATCCTGG

*****************************************.........((((((.(((((((.(((((((((.((((..........)).)).))))))))).))))))).))))))...........*************************************** 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 V115

head

 M054

female body

 V113

male body
.............................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................... 22 0 1 7841.00 7841 7493 280 63 5
.............................................................................................GCACTGGGTAAAGTTTGTCCT....................................................... 21 0 1 2496.00 2496 2371 106 17 2
.............................................................................................GCACTGGGTAAAGTTTGTCC........................................................ 20 0 1 146.00 146 143 3 0 0
........................................................CGACAAACCTTGTTCGGTTTTG........................................................................................... 22 0 1 106.00 106 103 1 2 0
.............................................................................................GCACTGGGTAAAGTTTGTC......................................................... 19 0 1 51.00 51 49 1 0 1
.....................................................................................................................................................ACCAAAGGTCCCGATCCTG. 19 0 1 49.00 49 44 0 5 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTAA..................................................... 23 1 1 33.00 33 32 1 0 0
.............................................................................................GTACTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 29.00 29 28 1 0 0
.............................................................................................GCATTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 27.00 27 27 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................... 23 0 1 24.00 24 24 0 0 0
....................................................................................................................................................CACCAAAGGTCCCGATCCTG. 20 0 1 18.00 18 14 2 2 0
.............................................................................................GCACTGGGTAAAGTTTGCCCTA...................................................... 22 1 1 16.00 16 15 1 0 0
.............................................................................................GCACTGGGTAAAGTTTCTCCTA...................................................... 22 1 1 15.00 15 15 0 0 0
.............................................................................................GCGCTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 12.00 12 11 1 0 0
............................................................................................AGCACTGGGTAAAGTTTGTCCT....................................................... 22 0 1 12.00 12 12 0 0 0
...............................................................................................ACTGGGTAAAGTTTGTCCTA...................................................... 20 0 1 11.00 11 11 0 0 0
......................................................................................................................................................CCAAAGGTCCCGATCCTG. 18 0 1 11.00 11 10 0 1 0
.............................................................................................GCACTGGGCAAAGTTTGTCCTA...................................................... 22 1 1 11.00 11 11 0 0 0
.............................................................................................GCACTGGGTAAAGCTTGTCCTA...................................................... 22 1 1 10.00 10 10 0 0 0
.............................................................................................GCACTGGGTAAGGTTTGTCCTA...................................................... 22 1 1 10.00 10 9 1 0 0
.............................................................................................GCACTGGGTAAAGTTCGTCCTA...................................................... 22 1 1 10.00 10 8 2 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTAC..................................................... 23 1 1 10.00 10 10 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCTTA...................................................... 22 1 1 9.00 9 9 0 0 0
.............................................................................................GCACTGGGTAAAGTCTGTCCTA...................................................... 22 1 1 9.00 9 9 0 0 0
.............................................................................................GCATTGGGTAAAGTTTGTCCT....................................................... 21 1 1 9.00 9 9 0 0 0
.............................................................................................CCACTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 8.00 8 6 1 1 0
.............................................................................................GCACCGGGTAAAGTTTGTCCTA...................................................... 22 1 1 8.00 8 8 0 0 0
........................................................CGACAAACCTTGTTCGGTTTT............................................................................................ 21 0 1 8.00 8 8 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTAAA.................................................... 24 1 1 7.00 7 7 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTACTA...................................................... 22 1 1 7.00 7 5 1 0 1
.............................................................................................GCACTGGCTAAAGTTTGTCCTA...................................................... 22 1 1 7.00 7 7 0 0 0
.............................................................................................GCACTGGGTAAAGTTTATCCTA...................................................... 22 1 1 7.00 7 7 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTG...................................................... 22 1 1 7.00 7 7 0 0 0
.............................................................................................GCCCTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 6.00 6 6 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTTCTA...................................................... 22 1 1 6.00 6 6 0 0 0
.............................................................................................GCACTGGGTAGAGTTTGTCCTA...................................................... 22 1 1 6.00 6 6 0 0 0
.............................................................................................GCACTGGGTAAAGTTTTTCCTA...................................................... 22 1 1 5.00 5 5 0 0 0
.............................................................................................GCAATGGGTAAAGTTTGTCCTA...................................................... 22 1 1 5.00 5 4 0 1 0
.............................................................................................GCACTGGGTGAAGTTTGTCCT....................................................... 21 1 1 5.00 5 5 0 0 0
.............................................................................................GCACTGGGTAAAGTATGTCCTA...................................................... 22 1 1 5.00 5 5 0 0 0
.............................................................................................GCGCTGGGTAAAGTTTGTCCT....................................................... 21 1 1 5.00 5 5 0 0 0
.............................................................................................GTACTGGGTAAAGTTTGTCCT....................................................... 21 1 1 5.00 5 5 0 0 0
.............................................................................................GCACTGGGTGAAGTTTGTCCTA...................................................... 22 1 1 5.00 5 5 0 0 0
............................................................................................CGCACTGGGTAAAGTTTGTCCTA...................................................... 23 1 1 5.00 5 4 0 1 0
.............................................................................................TCACTGGGTAAAGTTTGTCCT....................................................... 21 1 1 5.00 5 5 0 0 0
.............................................................................................GCACTGGGTACAGTTTGTCCTA...................................................... 22 1 1 5.00 5 5 0 0 0
.............................................................................................GCACTGGGTAACGTTTGTCCTA...................................................... 22 1 1 5.00 5 5 0 0 0
..............................................................................................CACTGGGTAAAGTTTGTCCTA...................................................... 21 0 1 4.00 4 1 0 3 0
.............................................................................................GCACTGGGTAATGTTTGTCCTA...................................................... 22 1 1 4.00 4 3 1 0 0
.............................................................................................GCACTGGGTAAAGTTCGTCCT....................................................... 21 1 1 4.00 4 4 0 0 0
.............................................................................................GCACTGGGCAAAGTTTGTCCT....................................................... 21 1 1 4.00 4 4 0 0 0
.............................................................................................GCTCTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 4.00 4 4 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCC....................................................... 21 1 1 4.00 4 4 0 0 0
.............................................................................................GCACTGGGTAAAGTTAGTCCTA...................................................... 22 1 1 4.00 4 4 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCTC...................................................... 22 1 1 3.00 3 3 0 0 0
...........................................................................................CAGCACTGGGTAAAGTTTGTCCT....................................................... 23 0 1 3.00 3 3 0 0 0
............................................................................................AGCACTGGGTAAAGTTTGTCC........................................................ 21 0 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGATTGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGATAAAGTTTGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGTTTATCCT....................................................... 21 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGGAAAGTTTGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
...............................................................................................ACTGGGTAAAGTTTGTCCT....................................................... 19 0 1 3.00 3 3 0 0 0
.............................................................................................ACACTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCCA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAACTTTGTCCT....................................................... 21 1 1 3.00 3 2 1 0 0
.............................................................................................GCACTGGTTAAAGTTTGTCCT....................................................... 21 1 1 3.00 3 2 0 1 0
.............................................................................................TCACTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGTTGGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGCCCT....................................................... 21 1 1 3.00 3 3 0 0 0
..............................................................................................CACTGGGTAAAGTTTGTCCT....................................................... 20 0 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAATTTTGTCCTA...................................................... 22 1 1 3.00 3 3 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCG....................................................... 21 1 1 3.00 3 2 0 1 0
.............................................................................................GCACTGGGTAAGGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
........................................................CGACAAACCTTGTTCGGTTTTGT.......................................................................................... 23 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCA........................................................ 20 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAACTTTGTCCTA...................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGCTTGTCC........................................................ 20 1 1 2.00 2 2 0 0 0
.............................................................................................GCTCTGGGTAAAGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGAGTAAAGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
........................................................CGACAAACCTTGTTCGGTT.............................................................................................. 19 0 1 2.00 2 2 0 0 0
.............................................................................................GCGCTGGGTAAAGTTTGTC......................................................... 19 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGCTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGACCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTACAGTTTGTCCT....................................................... 21 1 1 2.00 2 1 1 0 0
.............................................................................................GCACTGGGTCAAGTTTGTCCTA...................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGGCCTA...................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGTTAAAGTTTGTCCTA...................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGAAAAGTTTGTCCTA...................................................... 22 1 1 2.00 2 2 0 0 0
.................................................................................................TGGGTAAAGTTTGTCCTA...................................................... 18 0 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCTT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGAAAAGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTAGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTTGGTAAAGTTTGTCCT....................................................... 21 1 1 2.00 2 1 1 0 0
.............................................................................................GCACTGGGTAACGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCA....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTAGGTAAAGTTTGTCCTA...................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAATTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
...................................................................................................................................................TCACCAAAGGTCCCGATCCTG. 21 0 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGGAAAGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCATA...................................................... 22 1 1 2.00 2 2 0 0 0
.............................................................................................GCCCTGGGTAAAGTTTGTCCT....................................................... 21 1 1 2.00 2 2 0 0 0
...........................................................................................CAGCACTGGGTAAAGTTTGTCC........................................................ 22 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTTCAA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGAGTAAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTTAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
........................................................CGACAAACCTTGTTCGGTTTTGC.......................................................................................... 23 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCGTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTATAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACCGGGTAAAGTTTGTCC........................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAGATTTGTCCT....................................................... 21 2 1 1.00 1 1 0 0 0
........................................................CGACAAACCTTGTTCGGT............................................................................................... 18 0 1 1.00 1 1 0 0 0
.............................................................................................CCACTGGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
........................................................CGATAAACCTTGTTCGGTTTTG........................................................................................... 22 1 1 1.00 1 1 0 0 0
........................................................CGACAAATCTTGTTCGGTTTTG........................................................................................... 22 1 1 1.00 1 1 0 0 0
...............................................................................................GCTGGGTAAAGTTTGTCCT....................................................... 19 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAGAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTGAAGTTTGTCC........................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGGAAAGTCTGTCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................ACACTGGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
..........................................................................................CCAGCACTGGGTAAAGTTTGT.......................................................... 21 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAATTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTTGGTAAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGACTGTCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTACT....................................................... 21 1 1 1.00 1 1 0 0 0
.........................................................GACAAACCTTGTTCGGTTTTG........................................................................................... 21 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGAATGTCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCAACGGGTAAAGTTTGTCCTA...................................................... 22 2 1 1.00 1 0 1 0 0
.............................................................................................GCACTGTGTAAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTTAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GTACTGGGTAAAGTTTGCCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
............................................................................................TGCACTGGGTAAAGTTTGTCCTA...................................................... 23 1 1 1.00 1 1 0 0 0
.............................................................................................GCACGGGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGCGTAAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
............................................................................................CGCACTGGGTAAAGTTTGTCCT....................................................... 22 1 1 1.00 1 1 0 0 0
........................................................CGCCAAACCTTGTTCGGTTTTG........................................................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GTACTGGGTAAAGTTTGTCTT....................................................... 21 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTACCGTTTGTCCT....................................................... 21 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTAGTC......................................................... 19 1 1 1.00 1 1 0 0 0
........................................................CGACAAACCTTGCTCGGTTTTG........................................................................................... 22 1 1 1.00 1 1 0 0 0
........................................................TGACAAACCTTGTTCGGTTTTG........................................................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGACCTA...................................................... 22 1 1 1.00 1 1 0 0 0
...............................................................................................GCTGGGTAAAGTTTGTCCTA...................................................... 20 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGCTTGCCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
..............................................................................................CACTGGGTAAAGTTTGTCCTAA..................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCTA....................................................... 21 2 2 1.00 2 2 0 0 0
.............................................................................................GCACTGGGTAAAGGTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
........................................................CGACACCCCTTGTTCGGTTTTG........................................................................................... 22 2 1 1.00 1 1 0 0 0
............................................................................................CGCACTGGGTAAAGTTTGTCCTAA..................................................... 24 2 1 1.00 1 1 0 0 0
............................................................................................AGCACTGGGTAAAGTTTGTCCTC...................................................... 23 1 1 1.00 1 1 0 0 0
.............................................................................................GCACAGGGTAAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTATGTCC........................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTCTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
..............................................................................................GCCTGGGTAAAGTTTGTCCT....................................................... 20 2 1 1.00 1 1 0 0 0
.............................................................................................GCACCGGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCAATGGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGCTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTCTCCTAA..................................................... 23 2 1 1.00 1 1 0 0 0
..................................................................................................................................................ATCACCAAAGGTCCCGATCCTG. 22 0 1 1.00 1 0 1 0 0
.............................................................................................GAACTGGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGCGTAAAGTTCGTCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCAATGGGTAAAGTTTGTCATA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAGGGTTTGTCCTA...................................................... 22 2 1 1.00 1 0 0 0 1
...............................................................................................ACTGGGTAAAGTTTGTCC........................................................ 18 0 1 1.00 1 1 0 0 0
.................................................................................................................................................AATCACCAAAGGTCCCGATCCTG. 23 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAACGTTTGTCCTC...................................................... 22 2 1 1.00 1 1 0 0 0
................................................................................................CTGGGTAAAGTTTGTCCTA...................................................... 19 0 1 1.00 1 1 0 0 0
.............................................................................................GCAGTGGGTAAAGTTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAATGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGACCCA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAACGTTTGCCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTAATA...................................................... 22 2 1 1.00 1 1 0 0 0
.............................................................................................GCATTGGGTAAAGTTTGTCC........................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGATAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
..............................................................................................CACTGGGTAAAGTTTGTCC........................................................ 19 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGACAAAGTTTGTCCTA...................................................... 22 2 1 1.00 1 1 0 0 0
............................................................................................CGCATTGGGTAAAGTTTGTCCTA...................................................... 23 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTAGGTAAAGTTTGTCCT....................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTCCGA...................................................... 22 1 1 1.00 1 0 0 1 0
............................................................................................AGCACTGGGTAAAGTTTGT.......................................................... 19 0 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAATTTGTCCTA...................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGT.......................................................... 18 0 1 1.00 1 1 0 0 0
........................................................CGACAAACCTTGTTCGTTTTG............................................................................................ 21 2 1 1.00 1 1 0 0 0
.............................................................................................GCACTGGGTAAAGTTTGTTCT....................................................... 21 1 1 1.00 1 1 0 0 0
........................................................CGACAAACTTTGTTCGGTTTTG........................................................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................GCACTGAGTAAAGTTTGTCC........................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................GCAATGGATACAGTTTGTCCTA...................................................... 22 3 2 0.50 1 1 0 0 0
.............................................................................................GCACTGGGTCCAGTTTGTCTT....................................................... 21 3 2 0.50 1 1 0 0 0
.............................................................................................GCACTGGGTAAACTTTGTTCTA...................................................... 22 2 2 0.50 1 1 0 0 0
.............................................................................................GCCCTGGGCAAAGTTTGTCC........................................................ 20 2 2 0.50 1 1 0 0 0
......................................................................................................................................................ACCAAGGTCCCGATCCTG. 18 2 4 0.25 1 1 0 0 0

Anti-sense strand reads

TCACACTCGTAGGTCGTCACTTTTCGTTACAGAATTTCAAACCTTGTCGTTAATATGCTGTTTGGAACAAGCCAAAACGGTTAAAGGTTCGGTCGTGACCCATTTCAAACAGGATATTAGGGCTTTGCTGCTGGTCGATTAACACTTAGTGGTTTCCAGGGCTAGGACC

***************************************.........((((((.(((((((.(((((((((.((((..........)).)).))))))))).))))))).))))))...........***************************************** 		Read size # Mismatch Hit Count Total Norm Total M054

female body
......................................................................................................TATCAAACGGGATATTAGGA............................................... 20 3 5 0.20 1 1
..........................................................................................................................CTTTGATGTTGGACGATTAA........................... 20 3 13 0.08 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1:13063888-13064056 - dse-mir-309 Known_mirbase AGT----GTGAGCATCCAGCAGTGAAAAGC-------AATGTCT-----------------------------------TAAAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCT-----A---A-----------------------------------TTGTGAATCACC-AA--------AGGTCCCGATCCTGG
droSim2 2r:16196431-16196598 - dsi-mir-309 Known_mirbase AGT----GTGAGGATCTAGTAGTGCAAAGC-------A-AGTCT-----------------------------------TAAAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCT-----A---A-----------------------------------TTGTGAACCACC-AA--------AGGTCCCGATCCTGG
dm3 chr2R:15549161-15549329 - dme-mir-309 Known_mirbase AGT----GTAAGGATCCCGCAGTGAGAAGC-------GAAGTCT-----------------------------------TAAAGTTTGGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCT-----A---A-----------------------------------TTGTGAGCCACC-TA--------AGGTCCCGATCCTGG
droEre2 scaffold_4845:9749405-9749573 - der-mir-309 Known_mirbase AGT----GTGAGGATCCCGCAGTGAAAAGT-------AAAGTAT-----------------------------------ACGAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCC-----A---A-----------------------------------TTGTGAACCCAC-CA--------AGGTCCTGATCCTGG
droYak3 2R:13623452-13623628 + dya-mir-309 Known_mirbase AGT----GTGATGATCCAGCAGTGAAAACA-------AAAGTATCAAA---------------------------GC---AAAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA----------------ATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCAGC-CA----A-----------------------------------GTGTGAACCATC-AA--------AGGTCCTGATCCTGG
droEug1 scf7180000409474:2396573-2396739 + GAT----GTGAAGATCAAGCAGTGAAAACA-------A-A---------------------------------------ATCAGTTCGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAAC-CAGCT-----A---A-----------------------------------TAGTGAATCTACCAA-----A-ACGGTCCCGATCCTGG
droBia1 scf7180000302143:3060051-3060216 - AGT----GTGACGATCCAGCAGTGAAA----------GAAGTAA-----------------------------------ATCAGCTCGGGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGAC-CAGCA-----A---A-----------------------------------GTGTGAAGCACCCGA--------AGGTCCCGATCCTGG
droTak1 scf7180000415384:83759-83925 + AGT----GTGAGGATCCAGCAGTGAAAA---------AAAGTAA-----------------------------------AACAGTTCGGAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGAC-CAGCT-----T---A-----------------------------------TTGTGAACCAACCAA--------AGGTCTCGATCTTGG
droEle1 scf7180000491201:2014224-2014404 - AGT----GTGAGGATCCAGCAGTGAAACAT-------AGATCAA---AGCAGCAAGCAA-------CT-----------CGAA----GGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGAC-CATCT-CG--A---A-----------------------------------CAGTGAATTATCGAA--------AGGCCCCGATCTTGG
droRho1 scf7180000780066:73361-73528 + AGT----ATGAGGATCCAGCAGTGAACCAA-------AAAGTAA-----------------------------------ATAAGCTCGGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCAA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGAC-CAGCT-----A---A-----------------------------------CTGTGATCAAAC-AA--------AGGCCTCGATATTGG
droFic1 scf7180000454039:848267-848432 - TGT----GTGAAGATCAAAGAGTGAAC----------AAATACT-----------------------------------AGAAGCTCCGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGAC-CAGTA-----A---A-----------------------------------GTGTTAACTACCAAA--------AGGTCCCGATCCTGG
droKik1 scf7180000302679:89625-89780 - AGA----GTGAGGTA-AGGC-----------------AAAGTGA-----------------------------------AG--CTTCGGCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGAC-CAGCA-----AT--C-----------------------------------CAGTGAACCAGC-AA--------AGGTCCCGAACTTGG
droAna3 scaffold_13266:9731079-9731233 + dan-mir-309 Known_mirbase AGT----GTGAAGAGCCGCGAGTTACA-----------AAGTGA-----------------------------------------------AGA-TCATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTC-CAGAC-----A---T-----------------------------------CTGTGAGCCCCCAAC--------TGGCTACGATCTTGG
droBip1 scf7180000396427:874058-874215 + AGT----GTGAAGAGCCGCGAGTTACA-----------AAGTG-----------------------------------------------AAAG-CCATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGTC-CAGAA-----A---T-----------------------------------CTGTGAATCCTCCGC-----TCCGGGTCACGATCTTGG
dp5 3:12677820-12678014 - dps-mir-309 Known_mirbase GGT----GTGAGGTGCCCGAAGTGAAGGAG-------A-AA-----------------AA------GAAAGAAAAACAAACTATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGAT-CAGCG-----AGCG---------------------TCTCA-GCGCA--CATTGTGAACGACG-----ATACCGAGGCAACGATCCTGG
droPer2 scaffold_2:8905646-8905846 + dpe-mir-309 Known_mirbase GGT----GTGAGGTGCCCGAAGTGAAGGAG-------A-AA-----------------AAGAAAAAGAAAAAAAAACGAACTATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGAT-CAGCG-----AGCG---------------------TCTCA-GCGCA--CATTGTGAACGACG-----ATACCGAGGCAACGATCCTGG
droWil2 scf2_1100000004514:1652003-1652210 - dwi-mir-3 Known_mirbase TGTAACAGTGAATAGT----TCATCTAAGAA------AAACTCA-----------------------------------ATCATTTCAT-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAAT-CAAAATA-CA----A--------------TTGGAGTGTTA-AAAAA--AAAGGAGAGTAATC-----GAATTTAGACCATGATTTTGG
droVir3 scaffold_12875:4111766-4111964 + dvi-mir-309 Known_mirbase TGT----GTAAGGAACCGGCGCAAAGAAGA---------AGC-------------------------------------CCAAT---ATAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA----------------GGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACAG-CAAAA-----A---AAAATAAAAATAAAACAATATTATTA-AATAAAA--AT-------ACC-AG-AATCTCATAGCTCTGCTTTTGG
droMoj3 scaffold_6496:20937055-20937247 - dmo-mir-309 Known_mirbase TGT----GTAAGGATCG--GAGTGGCACAG-TGCATATATATAT-----------------------------------ATATACA-AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG----------------GGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAGCAAGGAA-----AAAG---------------------TCC----AGTC--AATT------CAAC-GGAACTCTCGCAGCTCTACTTTTGG
droGri2 scaffold_5621:2472-2665 + dgr-mir-309-2 Known_mirbase AGT----GCAAGGATCGCTTAGAGTAACAG-------A-AATAA----------------------GTCTAA--------AAAATATATAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGACA----------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G--GAT-CAGCT-----A---A------A-----------A-GTTGTACATAAAA--ATGCTT---GCC-AA-ATTTTCATAGCTCTGCTTTTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
AGT----GTGAGCATCCAGCAGTGAAAAGC-------AATGTCT-----------------------------------TAAAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCT-----A---A-----------------------------------TTGTGAATCACC-AA--------AGGTCCCGATCCTGGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA.............................................................................................................2217841.0078416357493280
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT..............................................................................................................2112496.0024961722371106
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCC...............................................................................................................201146.00146001433
.......................................................................................................CGACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................221106.00106201031
...................................................................................................................................................................GCACTGGGTAAAGTTTGTC................................................................................................................19151.005101491
.........................................................................................................................................................................................................................................................................ACC-AA--------AGGTCCCGATCCTG.19149.004950440
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA............................................................................................................23133.003300321
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT............................................................................................................23124.002400240
........................................................................................................................................................................................................................................................................CACC-AA--------AGGTCCCGATCCTG.20118.001820142
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT..............................................................................................................22112.001200120
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA.............................................................................................................20111.001100110
..........................................................................................................................................................................................................................................................................CC-AA--------AGGTCCCGATCCTG.18111.001110100
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC............................................................................................................23110.001000100
.......................................................................................................CGACAAACCTTGTTCGGTTTT..........................................................................................................................................................................2118.0080080
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG.............................................................................................................2217.0070070
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA.............................................................................................................2114.0043010
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC..............................................................................................................2114.0040040
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT.............................................................................................................2213.0030030
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC.............................................................................................................2213.0030030
.................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT..............................................................................................................2313.0030030
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCC...............................................................................................................2113.0030030
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCT..............................................................................................................1913.0030030
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCT..............................................................................................................2013.0030030
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG..............................................................................................................2113.0031020
.......................................................................................................CGACAAACCTTGTTCGGTTTTGT........................................................................................................................................................................2312.0020020
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCA...............................................................................................................2012.0020020
.......................................................................................................CGACAAACCTTGTTCGGTT............................................................................................................................................................................1912.0020020
.......................................................................................................................................................................TGGGTAAAGTTTGTCCTA.............................................................................................................1812.0020020
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA..............................................................................................................2112.0020020
.......................................................................................................................................................................................................................................................................TCACC-AA--------AGGTCCCGATCCTG.2112.0020020
.................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCC...............................................................................................................2211.0010010
.......................................................................................................CGACAAACCTTGTTCGGTTTTGC........................................................................................................................................................................2311.0010010
.......................................................................................................CGACAAACCTTGTTCGGT.............................................................................................................................................................................1811.0010010
................................................................................................................................................................CCAGCACTGGGTAAAGTTTGT.................................................................................................................2111.0010010
........................................................................................................GACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................2111.0010010
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAA............................................................................................................2211.0010010
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA..............................................................................................................2121.0020020
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTC.............................................................................................................2311.0010010
......................................................................................................................................................................................................................................................................ATCACC-AA--------AGGTCCCGATCCTG.2211.0010001
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCC...............................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................AATCACC-AA--------AGGTCCCGATCCTG.2311.0010010
......................................................................................................................................................................CTGGGTAAAGTTTGTCCTA.............................................................................................................1911.0010010
....................................................................................................................................................................CACTGGGTAAAGTTTGTCC...............................................................................................................1911.0010010
..................................................................................................................................................................AGCACTGGGTAAAGTTTGT.................................................................................................................1911.0010010
...................................................................................................................................................................GCACTGGGTAAAGTTTGT.................................................................................................................1811.0010010
droSim2
AGT----GTGAGGATCTAGTAGTGCAAAGC-------A-AGTCT-----------------------------------TAAAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCT-----A---A-----------------------------------TTGTGAACCACC-AA--------AGGTCCCGATCCTGGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA.............................................................................................................22137772.00377721042115128481930317295197400000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT..............................................................................................................2111373.001373001100374401339260600000
.......................................................................................................CGACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................221406.0040610380100001302000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA............................................................................................................23148.00480000000018250500000
........................................................................................................................................................................GGGTAAAGTTTGTCCTA.............................................................................................................17137.0037000000006310000000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA.............................................................................................................20136.0036000000002780100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCC...............................................................................................................20133.0033000000002502600000
......................................................................................................................................................................CTGGGTAAAGTTTGTCCTA.............................................................................................................19130.00300000000011190000000
.........................................................................................................................................................................................................................................................................ACC-AA--------AGGTCCCGATCCTG.19129.00290016000000001300000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA.............................................................................................................21126.0026000100001690000000
.........................................................................................................................................................................GGTAAAGTTTGTCCTA.............................................................................................................16123.0023000000007160000000
.......................................................................................................CGACAAACCTTGTTCGGTTTT..........................................................................................................................................................................21118.001800000000850500000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC.............................................................................................................22114.001400000000670100000
..........................................................................................................................................................................GTAAAGTTTGTCCTA.............................................................................................................15113.0013000000003100000000
........................................................................................................................................................................................................................................................................CACC-AA--------AGGTCCCGATCCTG.20113.001300900000000400000
.......................................................................................................................................................................TGGGTAAAGTTTGTCCTA.............................................................................................................18112.001200000000570000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTC................................................................................................................19111.0011000001000001000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG.............................................................................................................2218.00800000000340100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT.............................................................................................................2218.00800000000410300000
.................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT..............................................................................................................2318.00800200000140100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT............................................................................................................2316.00600000000040200000
...................................................................................................................................................................GCACTGGGTAAAGTTTGT.................................................................................................................1816.00600000000420000000
..........................................................................................................................................................................................................................................................................CC-AA--------AGGTCCCGATCCTG.1815.00500500000000000000
................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC................................................................................................................2215.00500000000410000000
.......................................................................................................CGACAAACCTTGTTCGGTTTTGT........................................................................................................................................................................2314.00400200000000200000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCT..............................................................................................................1914.00400000000210100000
................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTCCTA.............................................................................................................2514.00400000000310000000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA.............................................................................................................2314.00400000000310000000
.........................................................................................................................................................................GGTAAAGTTTGTCCT..............................................................................................................1513.00300000000120000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC..............................................................................................................2113.00300000000100200000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT..............................................................................................................2213.00300000000020100000
......................................................................................................ACGACAAACCTTGTTCGGTTTT..........................................................................................................................................................................2212.00200200000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA..............................................................................................................2112.00200000000110000000
......................................................................................................................................................................................................................................................................ACCACC-AA--------AGGTCCCGATCCTG.2211.00100000000000100000
.......................................................................................................CGACAAACCTTGTTCGGTTTTA.........................................................................................................................................................................2211.00100100000000000000
...................................................................................................................................................................GCACTGGGTAAAGTT....................................................................................................................1511.00100000000100000000
.......................................................................................................................................................................TGGGTAAAGTTTGTCCT..............................................................................................................1711.00100000000100000000
.................................................................................................................................................................CAGCACTGGGTAAAGTTTGTC................................................................................................................2111.00100000000100000000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAT............................................................................................................2211.00100000000010000000
.......................................................................................................CGACAAACCTTGTTCGGT.............................................................................................................................................................................1811.00100000000010000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG..............................................................................................................2111.00100100000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA..............................................................................................................2121.00200000000200000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC............................................................................................................2311.00100000000000100000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCT..............................................................................................................2011.00100000000000100000
dm3
AGT----GTAAGGATCCCGCAGTGAGAAGC-------GAAGTCT-----------------------------------TAAAGTTTGGAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCT-----A---A-----------------------------------TTGTGAGCCACC-TA--------AGGTCCCGATCCTGGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA.............................................................................................................221372749.00372749000021172564461000000000000000060051440225181200010300040114040001000000000000000000000001184695024209914266539433475110189032812180016712949112661014102914117105000021300023000000000015031688119323100979702362411111562200000000040311805003514501002803008006210000003000001622020002001212040704401020010000442923611010100100110000166000010001301000019345311151486000007006272737500840231263190101165111022133522114311733139942011030
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT..............................................................................................................21186538.00865380000104392300000000000000001000000001074110100010800000130000200000000000000000000100086338059669620000000520800203140001394230023041750000000000000000000000007035092644536441714010131132010000020000004010010010000000010100150002001000000910040000001104041303505100000001020699201000001011000523100011014016100124441674435803221322162622379142700241431300101815611847212021341151138313002230
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCC...............................................................................................................2015469.0054690000000000000000000000100000000000389700000003060000000000000000000000000000000000004105000000000000000000000000002000000000000000000000000000471291791398900000000000000000000000000000000000000000002100000000000020000000000000102000100000000003629000010000000100201001010000000001800351201010000085524004001000000021002210000300022231280000300
.......................................................................................................CGACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................2214921.00492100000021342000000000000000000012000116000000000000000000000000000000000000000001100074521860626150001020000003103704105812250067926000000000000000000000000050269311301555501000100000000000000007030000201100300000000000000000010001000000000000000000010522126300003728100000000000000000000000000010001000000000000000082600000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA............................................................................................................2311848.00184800000015200000000000000000000000003600000000010000000100000000000000000000000000001516762414100000100300000000000128500170120000000000000000000000000182112482900010020000000000000000100000000000000000000000000000000000200000000000000000001010000000018100100000000000000000000000000000001020201000000000814100100000000100100000000000000000060000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC.............................................................................................................2211533.001533000000010000000000000000000000000060000000000000000000000000000000000000000000000143126000000000000000000000300000010000000000000100000000007345359110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010900000000000000000000000000000000000100000000000001311000000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTC................................................................................................................1911527.001527000000000000000000000000000000000045500000001000000000000000000000000000000000000008034400000000000000000000040003000000000000000000000000000288475129134000000000000000000000000000000000000000000000000000000000000000000000000000001000000000041400000000000001000000000000000000002000000000000000605600600000000000010010010010000000060000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT............................................................................................................231970.00970000000240000000000000000000000000014000000000000000000000000000000000000000000000056105940100000000000000000000001000141020000000000000000000000005118128180100000000000000000000000000000000000000000000000000000000000000000100000000000000000000008100000000000000000000000000000000000000000000000000463200000000000000000000000000000000030000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTACTG..........................................................................................................251741.0074100000000000000000000000000000000007390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG.............................................................................................................221516.005160000001310000000000000000000000000800000000000000000000000000000000000000000000004952214000000000000010000002100020020000000000000000000000001131471000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000373100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ACC-TA--------AGGTCCCGATCCTG.191450.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000074805144910000100020000000000990001200400000000000000000000000007000300000000000000000000000000000000000000000000000000000000000000000000001000200010000000000210000000000000000200000000000000000000000000000000134100000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT.............................................................................................................221438.004380000003310000000000000000000000000000000000000000000000000000000000000000000000002315235000004000000000000002300000010000000000000000000000006625823310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000520000000000000000000000000000000011000001000000000201400000000000000000000000000100100020000010
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC............................................................................................................231426.0042600000000100000000000000000000000002200000000000000000000000000000000000000000000002737176000000001100000000221200020020000000000000000000000004353226400000000000000000000000000000000000000000000000000000000001000000000000000000000000000000760000000000000000000000000000000000000000000000000211100000000000000000000000000000000030000000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA.............................................................................................................201360.00360000000000000000000000000000000000010000000000000000000000000000000000000000000000058004000000000000000000000000000000000000000000000000000003362328100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000850000000000000000000000000000000000000000000000000227000000000000000000000000000000000020000000
.......................................................................................................CGACAAACCTTGTTCGGTTTT..........................................................................................................................................................................211334.00334000000000000000000000000000000000010000000000000000000000000000000000000000000000403010000000000000000000000300000070000000000000000000000004910013707100000000000000000000100000000000100000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CACC-TA--------AGGTCCCGATCCTG.201276.00276000000260000000000000000000000000040000000000000000000000000000000000000000000000614442370000000000000000000045000122080000000000000000000000001100060000000000000000000000000000000000000000000000000000000000000000000000000010003010000000011000000000000000010000000000000000000000000000000055400000000000000000000000000000000000000010
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC..............................................................................................................211189.001890000000100000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000411137000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000148000000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCA...............................................................................................................201178.0017800000000000000000000000000000000001770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CC-TA--------AGGTCCCGATCCTG.181137.0013700000000000000000000000000000000000000000000000000000000000000000000000000000000030101772000000000000000000000300004008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000036000000000000000000000000000000000000000000
......................................................................................................................................................................CTGGGTAAAGTTTGTCCTA.............................................................................................................19192.0092000000000000000000000000000000000000000000000000000000000000000000000000000000000990030000000000000000000000000000000000000000000000000000011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCT..............................................................................................................19190.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011114000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000011000000000000000000000000000000000000000000000000061000000000000000000000000000000000000000000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA.............................................................................................................21189.008900000000000000000000000000000000000000000000000000000000000000000000000000000000013102500000000000000000000430002000000000000000000000000000173000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000
.......................................................................................................CGACAAACCTTGTTCGGTTTTT.........................................................................................................................................................................22188.008800000010000000000000000000000000000000000000000000000000000000000000000000000000074401200000000000000000000000000000000000000000000000000000981300000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT..............................................................................................................22172.00720000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000003700000000000000000000000000000000000000000000000000000000000000000000000000000002000000000002000000000000000000000000000000000002000000000000052200000001000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGT.................................................................................................................18170.0070000000000000000000000000000000000000000000000000000000000000000000000000000000010116100100000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000032110000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG............................................................................................................23168.006800000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000002410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000100000000044100000000000000000000000010000000000000000
........................................................................................................GACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................21163.0063000000020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000061124105000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC................................................................................................................22160.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000700010000000000000000000000000000000000000000000000000000011313000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000022100000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT...........................................................................................................24149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000001210500000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA.............................................................................................................23149.004900000001000000000000000000000000000000000000000000000000000000000000000000000000011003300000000000000000000300001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026000000000000000000000000000000000000000000
.......................................................................................................CGACAAACCTTGTTCGGTTT...........................................................................................................................................................................20148.00480000000000000000000000000000000000420000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTG................................................................................................................19138.00380000000000000000000000000000000000380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA..............................................................................................................21137.003700000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000010000000
.......................................................................................................................................................................TGGGTAAAGTTTGTCCTA.............................................................................................................18135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000003060100000000000000000000020000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
droEre2
AGT----GTGAGGATCCCGCAGTGAAAAGT-------AAAGTAT-----------------------------------ACGAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCC-----A---A-----------------------------------TTGTGAACCCAC-CA--------AGGTCCTGATCCTGGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA.............................................................................................................221612.00612141850384110
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT..............................................................................................................211280.0028021710187100
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCC...............................................................................................................20119.00195806000
.........................................................................................................................................................................................................................................................................CAC-CA--------AGGTCCTGATCCTG.19118.00188109000
.......................................................................................................CGACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................22114.00145207000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC..............................................................................................................21114.001401400000
........................................................................................................................................................................................................................................................................CCAC-CA--------AGGTCCTGATCCTG.2019.0096102000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA.............................................................................................................2116.0066000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC.............................................................................................................2215.0050104000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTC................................................................................................................1915.0050104000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA............................................................................................................2314.0043001000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCT..............................................................................................................2014.0044000000
.......................................................................................................CGACAAACCTTGTTCGGTTTT..........................................................................................................................................................................2114.0041101010
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT.............................................................................................................2213.0031002000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC............................................................................................................2312.0021100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG............................................................................................................2312.0021001000
......................................................................................................................................................................................................................................................................ACCCAC-CA--------AGGTCCTGATCCTG.2212.0021100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA..............................................................................................................2112.0020101000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT............................................................................................................2312.0020002000
......................................................................................................................................................................CTGGGTAAAGTTTGTCCT..............................................................................................................1811.0010100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGT.................................................................................................................1811.0011000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT...........................................................................................................2411.0010001000
.......................................................................................................CGACAAACCTTGTTCGGTTTTGT........................................................................................................................................................................2311.0010001000
.....................................................................................................TACGACAAACCTTGTTCGGTTT...........................................................................................................................................................................2211.0010100000
.....................................................................................................TACGACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................2411.0010001000
.......................................................................................................CGACAAACCTTGTTCGGTTTTT.........................................................................................................................................................................2211.0010001000
..................................................................................................................................................................................................................................................................GTGAACCCAC-CA--------AGGTCCTGATCCTG.2611.0011000000
........................................................................................................................................................................................................................................................................CCAC-CA--------AGGTCCTGATCC...1811.0010100000
.......................................................................................................CGACAAACCTTGTTCGGTTT...........................................................................................................................................................................2011.0011000000
...........................................................................................................................................................................TAAAGTTTGTCCTATAATCCCG.....................................................................................................2211.0010001000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG.............................................................................................................2211.0011000000
.......................................................................................................................................................................................................................................................................CCCAC-CA--------AGGTCCTGATCCTG.2111.0011000000
..........................................................................................................................................................................................................................................................................AC-CA--------AGGTCCTGATCCTG.1811.0011000000
droYak3
AGT----GTGATGATCCAGCAGTGAAAACA-------AAAGTATCAAA---------------------------GC---AAAGTTTGGAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA----------------ATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGAC-CAGCAGC-CA----A-----------------------------------GTGTGAACCATC-AA--------AGGTCCTGATCCTGGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA.............................................................................................................2211191.001191037694180100000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT..............................................................................................................2111020.001020028361800200000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC..............................................................................................................211228.002280022710000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCC...............................................................................................................20194.0094008770000000
.........................................................................................................................................................................................................................................................................ATC-AA--------AGGTCCTGATCCTG.19181.00810060210000000
.......................................................................................................CGACAAACCTTGTTCTGTTTTG.........................................................................................................................................................................22128.0028002800000000
........................................................................................................................................................................................................................................................................CATC-AA--------AGGTCCTGATCCTG.20126.0026002330000000
.......................................................................................................................................................................................................................................................................CCATC-AA--------AGGTCCTGATCCTG.21111.0011001010000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA............................................................................................................2318.00800350000000
..........................................................................................................................................................................................................................................................................TC-AA--------AGGTCCTGATCCTG.1816.00600330000000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA.............................................................................................................2116.00602400000000
.......................................................................................................CGACAAACCTTGTTCTGTTTTGCC.......................................................................................................................................................................2416.00600600000000
.......................................................................................................CGACAAACCTTGTTCTGTTTT..........................................................................................................................................................................2115.00500410000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTC................................................................................................................1915.00500230000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC.............................................................................................................2214.00400310000000
......................................................................................................................................................................................................................................................................ACCATC-AA--------AGGTCCTGATCCTG.2214.00400400000000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT..............................................................................................................2214.00400310000000
...................................................................................................TATACGACAAACCTTGTTCTGT.............................................................................................................................................................................2213.00300300000000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA.............................................................................................................2013.00300210000000
....................................................................................................ATACGACAAACCTTGTTCTGTT............................................................................................................................................................................2212.00200200000000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCT..............................................................................................................1912.00200200000000
.....................................................................................................................................................................................................................................................................AACCATC-AA--------AGGTCCTGATCCTG.2312.00200200000000
.......................................................................................................CGACAAACCTTGTTCTGTTT...........................................................................................................................................................................2012.00200200000000
......................................................................................................ACGACAAACCTTGTTCTGTTTTGCC.......................................................................................................................................................................2512.00200200000000
.......................................................................................................CGACAAACCTTGTTCTGT.............................................................................................................................................................................1812.00200110000000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCT..............................................................................................................2012.00200200000000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCC..............................................................................................................1912.00200200000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT.............................................................................................................2212.00200110000000
....................................................................................................ATACGACAAACCTTGTTCTGTC............................................................................................................................................................................2211.00100100000000
.....................................................................................................TACGACAAACCTTGTTCTGTTTT..........................................................................................................................................................................2311.00100100000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG..............................................................................................................2111.00100100000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC............................................................................................................2311.00100100000000
..........................................................................................................................................................................GTAAAGTTTGTCCTATAATCC.......................................................................................................2111.00100100000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTCC............................................................................................................2311.00100100000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT............................................................................................................2311.00100000010000
........................................................................................................................................................................................................................................................................CATC-AA--------AGGTCCTGATCCC..1911.00100100000000
.......................................................................................................................................................................................................................................................................CCATC-AA--------AGGTCCTGATCCT..2011.00100100000000
.........................................................................................................................................................................................TAATCCCGAAAC--GACGAC-CAGCAGC-................................................................................2511.00100100000000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG.............................................................................................................2211.00100010000000
.....................................................................................................TACGACAAACCTTGTTCTGTTTTGC........................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................................................................................AACCATC-AA--------AGGTCCTGATCC...2111.00100100000000
......................................................................................................................................................TA------G-CCAGCACTGGGTAAAGTTTGTCCTA.............................................................................................................2811.00100100000000
...................................................................................................TATACGACAAACCTTGTTCTGC.............................................................................................................................................................................2211.00100100000000
.......................................................................................................CGACAAACCTTGTTCTGTTTTGT........................................................................................................................................................................2311.00100100000000
.................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCC..............................................................................................................2311.00100100000000
......................................................................................................................................................................CTGGGTAAAGTTTGTCCTA.............................................................................................................1911.00100100000000
.......................................................................................................CGACAAACCTTGTTCTGTTTTGC........................................................................................................................................................................2311.00100100000000
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCC..............................................................................................................2011.00100100000000
.......................................................................................................................................................................TGGGTAAAGTTTGTCCTA.............................................................................................................1811.00100100000000
........................................................................................................................................................................................................................................................................CATC-AA--------AGGTCCTGATCC...1811.00100100000000
.......................................................................................................CGACAAACCTTGTTCTGC.............................................................................................................................................................................1830.33100100000000
droEug1
GAT----GTGAAGATCAAGCAGTGAAAACA-------A-A---------------------------------------ATCAGTTCGGAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAAC-CAGCT-----A---A-----------------------------------TAGTGAATCTACCAA-----A-ACGGTCCCGATCCTGGSizeHit CountTotal NormTotal
No Reads
droBia1
AGT----GTGACGATCCAGCAGTGAAA----------GAAGTAA-----------------------------------ATCAGCTCGGGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGAC-CAGCA-----A---A-----------------------------------GTGTGAAGCACCCGA--------AGGTCCCGATCCTGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGT----GTGAGGATCCAGCAGTGAAAA---------AAAGTAA-----------------------------------AACAGTTCGGAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGAC-CAGCT-----T---A-----------------------------------TTGTGAACCAACCAA--------AGGTCTCGATCTTGGSizeHit CountTotal NormTotal
No Reads
droEle1
AGT----GTGAGGATCCAGCAGTGAAACAT-------AGATCAA---AGCAGCAAGCAA-------CT-----------CGAA----GGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGAC-CATCT-CG--A---A-----------------------------------CAGTGAATTATCGAA--------AGGCCCCGATCTTGGSizeHit CountTotal NormTotal
No Reads
droRho1
AGT----ATGAGGATCCAGCAGTGAACCAA-------AAAGTAA-----------------------------------ATAAGCTCGGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCAA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGAC-CAGCT-----A---A-----------------------------------CTGTGATCAAAC-AA--------AGGCCTCGATATTGGSizeHit CountTotal NormTotal
No Reads
droFic1
TGT----GTGAAGATCAAAGAGTGAAC----------AAATACT-----------------------------------AGAAGCTCCGAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGAC-CAGTA-----A---A-----------------------------------GTGTTAACTACCAAA--------AGGTCCCGATCCTGGSizeHit CountTotal NormTotal
No Reads
droKik1
AGA----GTGAGGTA-AGGC-----------------AAAGTGA-----------------------------------AG--CTTCGGCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGAC-CAGCA-----AT--C-----------------------------------CAGTGAACCAGC-AA--------AGGTCCCGAACTTGGSizeHit CountTotal NormTotal
No Reads
droAna3
AGT----GTGAAGAGCCGCGAGTTACA-----------AAGTGA-----------------------------------------------AGA-TCATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTC-CAGAC-----A---T-----------------------------------CTGTGAGCCCCCAAC--------TGGCTACGATCTTGGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA.............................................................................................................221207.002072492741025
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT..............................................................................................................211150.00150157948512
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC..............................................................................................................21119.00190190000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCC...............................................................................................................20115.00150132000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT..............................................................................................................2217.007051100
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA.............................................................................................................2114.004310000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT............................................................................................................2313.003012000
..........................................................................................................CAAACCTTGTTCGGTTTTGC........................................................................................................................................................................2012.002010100
....................................................................................................................................................................CACTGGGTAAAGTTTGTCCT..............................................................................................................2012.002200000
...................................................................................................................................................................GCACTGGGTAAAGTTTGT.................................................................................................................1811.001010000
.......................................................................................................CGACAAACCTTGTTCGGTTTT..........................................................................................................................................................................2111.001001000
.........................................................................................................................................................................................................................................................................CCCAAC--------TGGCTACGATCTTG.2011.001010000
..........................................................................................................................................................................................................................................................................CCAAC--------TGGCTACGATCTTG.1911.001001000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT.............................................................................................................2211.001001000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG............................................................................................................2311.001010000
..................................................................................................................................................................AGCACTGGGTAAAGTTTGTCC...............................................................................................................2111.001001000
.......................................................................................................CGACAAACCTTGTTCGGTTTTT.........................................................................................................................................................................2211.001001000
....................................................................................................ATACGACAAACCTTGTTCGGTT............................................................................................................................................................................2211.001010000
...................................................................................................................................................................GCACTGGGTAAAGTTTGC.................................................................................................................1811.001010000
.....................................................................................................................................................................ACTGGGTAAAGTTTGTCCT..............................................................................................................1911.001010000
...................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG..............................................................................................................2111.001010000
.......................................................................................................CGACAAACCTTGTTCGGTTTTG.........................................................................................................................................................................2211.001000001
......................................................................................................ACGACAAACCTTGTTCGGTTT...........................................................................................................................................................................2111.001010000
droBip1
AGT----GTGAAGAGCCGCGAGTTACA-----------AAGTG-----------------------------------------------AAAG-CCATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGTC-CAGAA-----A---T-----------------------------------CTGTGAATCCTCCGC-----TCCGGGTCACGATCTTGGSizeHit CountTotal NormTotal
No Reads
dp5
GGT----GTGAGGTGCCCGAAGTGAAGGAG-------A-AA-----------------AA------GAAAGAAAAACAAACTATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGAT-CAGCG-----AGCG---------------------TCTCA-GCGCA--CATTGTGAACGACG-----ATACCGAGGCAACGATCCTGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA.............................................................................................................2212449.00244907712400113200000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT..............................................................................................................211480.00480025295015901000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA............................................................................................................231166.00166075909802000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCT...............................................................................................................20139.003906290400000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT..............................................................................................................22135.003501260800000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTA.............................................................................................................23117.00170280700000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTC..............................................................................................................21116.001600150100000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT.............................................................................................................22113.00130130900000
.......................................................................................................CGATAAACTTTGTTCAGTTTTG.........................................................................................................................................................................22112.00120350400000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCT...............................................................................................................21111.00110170300000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT............................................................................................................23110.00100140500000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAC............................................................................................................2319.0090030600000
....................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA.............................................................................................................2118.0080710000000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCC...............................................................................................................2018.0080080000000
......................................................................................................ACGATAAACTTTGTTCAGTTTT..........................................................................................................................................................................2217.0070150100000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC.............................................................................................................2216.0060060000000
..................................................................................................................................................................................................................................................................................TACCGAGGCAACGATCCTG.1915.0050010400000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG.............................................................................................................2215.0050000500000
.......................................................................................................CGATAAACTTTGTTCAGTTTT..........................................................................................................................................................................2115.0050030200000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTC................................................................................................................1914.0040040000000
.....................................................................................................TACGATAAACTTTGTTCAGTTTT..........................................................................................................................................................................2313.0030030000000
....................................................................................................................................................................CACTGGGTGAAGTTTGTCTT..............................................................................................................2013.0030210000000
......................................................................................................ACGATAAACTTTGTTCAGTTTC..........................................................................................................................................................................2212.0020020000000
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA.............................................................................................................2012.0020020000000
....................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAT............................................................................................................2212.0020010100000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCC...............................................................................................................2112.0020020000000
...........................................................................................................................................................................................................................................................................G-----ATACCGAGGCAACGATCCTG.2111.0010000100000
...................................................................................................................................................................................................................................................................................ACCGAGGCAACGATCCTG.1811.0010000100000
......................................................................................................................................................................CTGGGTGAAGTTTGTCTTA.............................................................................................................1911.0010100000000
.....................................................................................................TACGATAAACTTTGTTCAGTTT...........................................................................................................................................................................2211.0010010000000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTC................................................................................................................2011.0010010000000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAAG...........................................................................................................2411.0010010000000
.......................................................................................................CGATAAACTTTGTTCAGTTT...........................................................................................................................................................................2011.0010000000010
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCA............................................................................................................2311.0010000100000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTATT...........................................................................................................2411.0010010000000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTT.............................................................................................................2311.0010010000000
.................................................................................................................................................................................................................................................................................ATACCGAGGCAACGATCCTG.2011.0010010000000
.......................................................................................................CGATAAACTTTGTTCAGTTTTGT........................................................................................................................................................................2311.0010010000000
......................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA............................................................................................................2011.0010010000000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTG..............................................................................................................2111.0010010000000
........................................................................................................GATAAACTTTGTTCAGTTTTG.........................................................................................................................................................................2111.0010100000000
.......................................................................................................CGATAAACTTTGTTCAGTTTTGC........................................................................................................................................................................2311.0010010000000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCC............................................................................................................2311.0010000100000
droPer2
GGT----GTGAGGTGCCCGAAGTGAAGGAG-------A-AA-----------------AAGAAAAAGAAAAAAAAACGAACTATCTCGGAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGAT-CAGCG-----AGCG---------------------TCTCA-GCGCA--CATTGTGAACGACG-----ATACCGAGGCAACGATCCTGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA.............................................................................................................221207.0020715101710101
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT..............................................................................................................21148.00486138021
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA............................................................................................................23123.00230218021
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCT...............................................................................................................2015.005102020
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT..............................................................................................................2215.005113000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT.............................................................................................................2212.002002000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT............................................................................................................2312.002001010
.......................................................................................................CGATAAACTTTGTTCAGTTTTG.........................................................................................................................................................................2212.002002000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTC................................................................................................................1911.001001000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTA..............................................................................................................2111.001001000
..................................................................................................................................................................AGCACTGGGTGAAGTTTGTCT...............................................................................................................2111.001001000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG.............................................................................................................2211.001001000
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA.............................................................................................................2011.001001000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCC...............................................................................................................2011.001100000
.......................................................................................................CGATAAACTTTGTTCAGTTTT..........................................................................................................................................................................2111.001100000
...................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC.............................................................................................................2211.001000010
droWil2
TGTAACAGTGAATAGT----TCATCTAAGAA------AAACTCA-----------------------------------ATCATTTCAT-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAAT-CAAAATA-CA----A--------------TTGGAGTGTTA-AAAAA--AAAGGAGAGTAATC-----GAATTTAGACCATGATTTTGGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTA.............................................................................................................22112777.001277712601273515
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAA............................................................................................................2313479.00347904034705
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTT..............................................................................................................2111173.00117308011650
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA.............................................................................................................20191.0091000910
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAT............................................................................................................23172.0072010710
...................................................................................................................................................CCTTA--------GCATCACTGGGTGAAG......................................................................................................................21147.0047000470
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTT.............................................................................................................22135.0035000350
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCTTAA............................................................................................................21126.0026000260
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAC............................................................................................................23123.0023000230
......................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTG..................................................................................................................22120.0020000200
..................................................................................................................................................................................................................................................................................AATTTAGACCATGATTTTG.19119.0019010180
....................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA.............................................................................................................21119.0019040150
...................................................................................................................................................CCTTA--------GCATCACTGGGTGAAGT.....................................................................................................................22118.0018000180
.......................................................................................................TGATAAACTTTGTTCAGTTTT..........................................................................................................................................................................21114.0014000140
...........................................................................................................AAACTTTGTTCAGTTTTGCAA......................................................................................................................................................................21113.0013000130
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAG............................................................................................................23112.0012000120
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTG.............................................................................................................22112.0012000120
......................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGC.................................................................................................................23110.0010000100
...................................................................................................................................................................................................................................................................................ATTTAGACCATGATTTTG.18110.0010000100
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAT...........................................................................................................24110.0010000100
......................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGT.................................................................................................................2319.00901080
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCT...............................................................................................................2018.00800080
...........................................................................................................AAACTTTGTTCAGTTTTGCAAT.....................................................................................................................................................................2218.00800080
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA..............................................................................................................2117.00700070
..........................................................................................................TAAACTTTGTTCAGTTTTGCAA......................................................................................................................................................................2217.00700070
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCTT..............................................................................................................1917.00700070
.....................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTG..................................................................................................................2317.00700070
.......................................................................................................TGATAAACTTTGTTCAGTTTTG.........................................................................................................................................................................2216.00601050
....................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAA............................................................................................................2216.00600060
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCT...............................................................................................................2115.00500050
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTATA...........................................................................................................2415.00500050
..........................................................................................................TAAACTTTGTTCAGTTTTGCA.......................................................................................................................................................................2114.00401030
.....................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGT.................................................................................................................2414.00400040
.....................................................................................................................................................TTA--------GCATCACTGGGTGAAGTT....................................................................................................................2114.00400040
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAG...........................................................................................................2414.00400040
...............................................................................................................TTTGTTCAGTTTTGCAATCAAA.................................................................................................................................................................2213.00300030
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAC...........................................................................................................2413.00300030
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCTT..............................................................................................................2213.00300030
...........................................................................................................AAACTTTGTTCAGTTTTGCAATC....................................................................................................................................................................2313.00300030
.......................................................................................................................................................A--------GCATCACTGGGTGAAGTTTG..................................................................................................................2113.00300030
......................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA............................................................................................................2013.00300030
...............................................................................................................TTTGTTCAGTTTTGCAATCAA..................................................................................................................................................................2113.00301020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTC................................................................................................................1913.00300030
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTTA............................................................................................................2312.00200020
......................................................................................................ATGATAAACTTTGTTCAGTTTT..........................................................................................................................................................................2212.00200020
.......................................................................................................TGATAAACTTTGTTCAGTTTTGT........................................................................................................................................................................2312.00200020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTGA............................................................................................................2312.00200020
.......................................................................................................................................................................TGGGTGAAGTTTGTCTTA.............................................................................................................1812.00200020
..................................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGT.....................................................................................................................2312.00200020
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCTTT.............................................................................................................2311.00100010
......................................................................................................................................................TA--------GCATCACTGGGTGAAGT.....................................................................................................................1911.00100010
.....................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGA.................................................................................................................2411.00100010
...............................................................................................................TTTGTTCAGTTTTGCAATCAAAAA...............................................................................................................................................................2411.00100010
....................................................................................................................................................................CACTGGGTGAAGTTTGTCTT..............................................................................................................2011.00101000
.............................................................................................................................CAATCAAAAAATCAAGAAAATTCCTT...............................................................................................................................................2611.00100010
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTC.............................................................................................................2211.00100010
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAGC...........................................................................................................2411.00100010
...................................................................................................................................................................TCACTGGGTGAAGTTTGA.................................................................................................................1811.00100010
..............................................................................................................CTTTGTTCAGTTTTGCAATCA...................................................................................................................................................................2111.00100010
...........................................................................................................................................AGAAAATTCCTTA--------GCATCACTGGGTGA........................................................................................................................2711.00100010
.......................................................................................................................................................A--------GCATCACTGGGTGAAGTTTGTC................................................................................................................2311.00100010
.....................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGC.................................................................................................................2411.00100010
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTC................................................................................................................2011.00100010
..................................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGTTTGTC................................................................................................................2811.00100010
...............................................................................................................................ATCAAAAAATCAAGAAAATTCCTTA--------GC....................................................................................................................................2711.00100010
...................................................................................................................................................................TCACTGGGTGAAGTTTGT.................................................................................................................1811.00100010
....................................................................................................................................................CTTA--------GCATCACTGGGTGAAG......................................................................................................................2011.00100010
......................................................................................................................................................TA--------GCATCACTGGGTGAAGTT....................................................................................................................2011.00100010
...................................................................................................................................................CCTTA--------GCATCACTGGGTGA........................................................................................................................1911.00100010
...............................................................................................................TTTGTTCAGTTTTGCAATC....................................................................................................................................................................1911.00100010
.....................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTT...................................................................................................................2211.00100010
......................................................................................................................................................TA--------GCATCACTGGGTGAAGTTT...................................................................................................................2111.00100010
...............................................................................................................TTTGTTCAGTTTTGCAAT.....................................................................................................................................................................1811.00100010
...................................................................................................................................................CCTTA--------GCATCACTGGGTGAA.......................................................................................................................2011.00100010
...........................................................................................................AAACTTTGTTCAGTTTTGCA.......................................................................................................................................................................2011.00100010
...................................................................................................................................................................TCACTGGGTGAAGTTTGTTA...............................................................................................................2020.50100010
droVir3
TGT----GTAAGGAACCGGCGCAAAGAAGA---------AGC-------------------------------------CCAAT---ATAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA----------------GGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACAG-CAAAA-----A---AAAATAAAAATAAAACAATATTATTA-AATAAAA--AT-------ACC-AG-AATCTCATAGCTCTGCTTTTGGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA.............................................................................................................22119425.0019425004546600000002110664110000000101102202289043365814141185202058906690320287108226365931121816110282947130001491511117300100789374377225251
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT..............................................................................................................2111582.001582001437000000001300000000000000100115131345133000002118352916335181064400042311300010675010000611501494835
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA............................................................................................................2311459.001459201135000000001200000000000010000003906068195960000373567147457272210757000529500000432900000125162288
.......................................................................................................TGGTAAACTTTGTTCAGTTTTG.........................................................................................................................................................................221454.004540002000000000000000000000000000046020671041490000313601001000000001100000221200000074058
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT............................................................................................................231247.002470019100000000000000000000000000000066122000006677711427230000424000001240000008111030
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC.............................................................................................................221239.00239100380000000001000000100000001000000030000001562427614177435000193100000321000001090000
..................................................................................................................................................................................................................................................................................TCTCATAGCTCTGCTTTTG.191123.0012300020000000000000000000000000000130920146100000110000000000000000000001100000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCG...............................................................................................................20176.007600023000000000000000000000000000100414200000541322011000000070000200200000014402
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC..............................................................................................................21165.006500062000000000000000000000000000000200000000000000000000000000000000100000000000
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA.............................................................................................................20157.0057000500000000050000000000000000001046105000000000000000000000200000000000000010000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT...........................................................................................................24149.004900015000000000000000000000000000000010000000328743100200000000000001000000000110
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC............................................................................................................23146.004600027000000000000000000000000000000000000000053501101000000020000000000000000001
.................................................................................................................................................................................................................................................................................ATCTCATAGCTCTGCTTTTG.20145.0045000000000000010000000000000000003031321900001200000000000000000000001000000000000
.............................................................................................................................CCA----------------GGCTCTTT-TTGTGC-GCA...................................................................................................................................20129.00290000000000000000000000000000000040239800000010000000000000010000000000100000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT.............................................................................................................22129.00290009000000000000000000000000000000100100000012202311010000020000000200000000010
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA.............................................................................................................23121.002100010000000000000000000000000000000100100000111000000001000020000000100000010001
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT..............................................................................................................22120.00200005000000000000000000000000000010002100000100101000000000030000010100000030000
.............................................................................................................................CCA----------------GGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTA.............................................................................................................42117.001700000000000000000000000000000000000000000001160000000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG.............................................................................................................22117.00170002000000001000000000000000000000111000000100100001000000070000000000000000010
...................................................................................................................................................................................................................................................................................CTCATAGCTCTGCTTTTG.18113.00130000000000000000000000000000000010211500002010000000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG............................................................................................................23112.00120003000000000000000000000000000000101000000100111000000000010000000100000000001
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA...........................................................................................................24112.00120001000000000000000000000000000000020000000130001000000000110000000100000000001
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAC...........................................................................................................2418.0080000000000000000000000000000000000000000001210111000100000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA............................................................................................................2318.0080000000000000000000000000000000000003000000010000000000000040000000000000000000
.......................................................................................................TGGTAAACTTTGTTCAGTTTT..........................................................................................................................................................................2118.0080000000000000000000000000000000000033100000000000000000000000000000000000010000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC...........................................................................................................2418.0080002000000000000000000000000000000000000000000130010000000010000000000000000000
....................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA.............................................................................................................2117.0070002000000000100000000000000000000101100000000000000000000010000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT...........................................................................................................2417.0070002000000000000000000000000000000001000000001000000000000020000001000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAG...........................................................................................................2417.0070001000000000000000000000000000000001100000111000000000000000000000000000000100
...................................................................................................................................................................TCACTGGGTGAAGTTTGTC................................................................................................................1917.0070000000000000000000000000000000000110000000100110010000000000000000000000010000
................................................................................................................................................................................................................................................................................AATCTCATAGCTCTGCTTTTG.2115.0050000000000000000000000000000000000000300001000000000000000000000000100000000000
.......................................................................................................TGGTAAACTTTGTTCAGTTTTGC........................................................................................................................................................................2315.0050003000000000000000000000000000000000000001100000000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATTT..........................................................................................................2515.0050000000000000000000000000000000000000000000010001010000000110000000000000000000
.......................................................................................................................................................................TGGGTGAAGTTTGTCGTA.............................................................................................................1815.0050001000000000000000000000000000010001000000000000000000000020000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATAA..........................................................................................................2515.0050000000000000000000000000000000000000000000020010001000000010000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG..............................................................................................................2115.0050004000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................TGGTAAACTTTGTTCAGTTT...........................................................................................................................................................................2014.0040000000000000000000000000000000000001000000110000000000000000000000000000000010
...................................................................................................................................................................TCACTGGGTGAAGTTTGT.................................................................................................................1814.0040000000000000000000000000000000000010100000020000000000000000000000000000000000
.......................................................................................................TGGTAAACTTTGTTCAGTTTTGCC.......................................................................................................................................................................2413.0030001000000000000000000000000000000000000000100001000000000000000000000000000000
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA............................................................................................................2113.0030000000000000000000000000000000000101000000000000000000000010000000000000000000
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCG...............................................................................................................2113.0030001000000000000000000000000000000000000000000000000000000010000000000000000001
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCC............................................................................................................2312.0020000000000000000000000000000000000000000000100000000000000010000000000000000000
...................................................................................................................................................................................................................................................................................CTCATAGCTCTGCTTT...1612.0020000000000000000000000000000000000000000000110000000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAACC..........................................................................................................2512.0020000000000000000000000000000000000000000000001100000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAATC..........................................................................................................2512.0020000000000000000000000000000000000000000000000200000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG...........................................................................................................2412.0020001000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................CTGGGTGAAGTTTGTCGTA.............................................................................................................1912.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CC-AG-AATCTCATAGCTCTGCTTTTG.2512.0020000000000000000000000000000000000000100000000000000000000000000000100000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA............................................................................................................2311.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC.............................................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGA---------AGC-------------------------------------CCAAT---ATAACAA-AT.....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................A----------------GGCTCTTT-TTGTGC-GCA...................................................................................................................................1811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCT...............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTGC............................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
TGT----GTAAGGATCG--GAGTGGCACAG-TGCATATATATAT-----------------------------------ATATACA-AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG----------------GGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAGCAAGGAA-----AAAG---------------------TCC----AGTC--AATT------CAAC-GGAACTCTCGCAGCTCTACTTTTGGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA.............................................................................................................22116785.00167855234933144214
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT..............................................................................................................2113875.00387572912235685
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC.............................................................................................................221620.00620240105770
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC..............................................................................................................211584.0058400005840
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA............................................................................................................231540.005400162003771
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT............................................................................................................231347.00347020003270
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCG...............................................................................................................201153.00153128111220
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC............................................................................................................23177.00770100760
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT.............................................................................................................22164.00640500590
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA.............................................................................................................20148.004803000180
.........................................................................................................GTAAACTTTGTTCAGTTTTGCC.......................................................................................................................................................................22134.00340000340
....................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA.............................................................................................................21123.00230000230
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT..............................................................................................................22121.00210100200
..................................................................................................................................................................................................................................................................................TCTCGCAGCTCTACTTTTG.19113.0013070060
.................................................................................................................................................................................................................................................................................CTCTCGCAGCTCTACTTTTG.20111.0011050060
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG..............................................................................................................21111.00110000110
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT...........................................................................................................24111.00110000110
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCG...............................................................................................................21110.0010020080
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCGT..............................................................................................................19110.0010040060
.........................................................................................................GTAAACTTTGTTCAGTTTTGC........................................................................................................................................................................2119.009000090
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC...........................................................................................................2419.009000090
...................................................................................................................................................................TCACTGGGTGAAGTTTGTC................................................................................................................1919.009010080
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGC..............................................................................................................2219.009000090
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG.............................................................................................................2218.008040040
.............................................................................................................................CCG----------------GGTTCTATGTTGTGC-GCA...................................................................................................................................2118.008050030
......................................................................................................................................................................CTGGGTGAAGTTTGTCGTA.............................................................................................................1917.007000070
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGA..............................................................................................................2117.007000070
.......................................................................................................................................................................TGGGTGAAGTTTGTCGTA.............................................................................................................1817.007020050
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA...........................................................................................................2416.006010050
................................................................................................................................................................................................................................................................................ACTCTCGCAGCTCTACTTTTG.2115.005000050
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC.............................................................................................................2215.005000050
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG............................................................................................................2315.005030020
.............................................................................................................................CCG----------------GGTTCTATGTTGTGC-GC....................................................................................................................................2015.005000050
.......................................................................................................AGGTAAACTTTGTTCAGTTTTG.........................................................................................................................................................................2215.005030020
.......................................................................................................AGGTAAACTTTGTTCAGTTTT..........................................................................................................................................................................2114.004020020
....................................................................................................................................................................CACTGGGTGAAGTTTGTCGT..............................................................................................................2014.004000040
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTC..............................................................................................................2113.003010020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT...........................................................................................................2413.003010020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA............................................................................................................2313.003030000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGGC.............................................................................................................2213.003010020
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTC.............................................................................................................2313.003000030
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA.............................................................................................................2313.003010020
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCGTC.............................................................................................................2012.002020000
......................................................................................................AAGGTAAACTTTGTTCAGTTTT..........................................................................................................................................................................2212.002020000
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA..............................................................................................................2112.002000020
..................................................................................................................................................................ATCACTGGGTGAAGTTTGTCT...............................................................................................................2112.002000020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCAC..............................................................................................................2112.002000020
...................................................................................................................................................................................................................................................................................CTCGCAGCTCTACTTTTG.1812.002010010
....................................................................................................................................................................CACTGGGTGAAGTTTGTCGTC.............................................................................................................2112.002100010
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA............................................................................................................2312.002020000
...................................................................................................................................................................TCACTGGGTGAAGTTTGT.................................................................................................................1812.002000020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCC...............................................................................................................2012.002000020
...................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG...........................................................................................................2412.002000020
.......................................................................................................AGGTAAACTTTGTTCAGTTTTGC........................................................................................................................................................................2311.001000010
.....................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA............................................................................................................2111.001010000
droGri2
AGT----GCAAGGATCGCTTAGAGTAACAG-------A-AATAA----------------------GTCTAA--------AAAATATATAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGACA----------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G--GAT-CAGCT-----A---A------A-----------A-GTTGTACATAAAA--ATGCTT---GCC-AA-ATTTTCATAGCTCTGCTTTTGGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:33 PM