ID:

dse-mir-308

 Coordinate:

scaffold_1:7611703-7611765 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.6 -30.6 -30.4

Flybase annnotation

intron [Dsec\GM20223-in]; pre_miRNA [Dsec\mir-308-RM]; utr3 [utr3_minus_3068]; miRNA [Dsec\miR-308-RA]

No Repeatable elements found

Sense Strand Reads

CCCTAACATAGAAGTGGTGGGGGATGGTGGGGGGAATCACGTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGTTTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCAGCAGCAAAAAGCGAATGATATTATATCAATTATAT

*************************************((((.((...((.(((((((((((.(((((((.((((....((...))....)))).))))))).))))))))))).))...))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V115

head

 V113

male body		 V114

embryo

 M054

female body
....................................................CGCAGTATATTTTTGTGTTTTG......................................................................................... 22 0 1 36133.00 36133 19580 11915 2995 1643
...........................................................................................AATCACAGGATTATACTGTGA................................................... 21 0 1 638.00 638 206 25 135 272
...........................................................................................AATCACAGGATTATACTGT..................................................... 19 0 1 530.00 530 182 18 187 143
....................................................CGCAGTATATTTTTGTGTTTT.......................................................................................... 21 0 1 375.00 375 168 71 51 85
.....................................................GCAGTATATTTTTGTGTTTTG......................................................................................... 21 0 1 334.00 334 103 78 19 134
....................................................CGCAGTATATTTTTGTGTTT........................................................................................... 20 0 1 150.00 150 91 40 10 9
....................................................CGCAGTATATTTTTGTGTCTTG......................................................................................... 22 1 1 108.00 108 20 86 2 0
....................................................CGCAGTATATTTTTGTGTATTG......................................................................................... 22 1 1 88.00 88 24 64 0 0
....................................................CGCAGTATCTTTTTGTGTTTTG......................................................................................... 22 1 1 74.00 74 29 36 5 4
....................................................CGCAGTATATTTTTGTGTT............................................................................................ 19 0 1 71.00 71 30 3 32 6
...........................................................................................AATCACAGGATTATACTGTGAG.................................................. 22 0 1 63.00 63 6 1 10 46
....................................................CGCAGTATATTTTTGTGCTTTG......................................................................................... 22 1 1 58.00 58 33 16 6 3
....................................................CGCAGTATATTTTTGCGTTTTG......................................................................................... 22 1 1 57.00 57 28 25 2 2
....................................................CGCAGTATATTTTTGTGTTTTGT........................................................................................ 23 0 1 56.00 56 15 29 4 8
....................................................CTCAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 50.00 50 16 19 5 10
....................................................CGCAGTATATTTTTGTGTTTG.......................................................................................... 21 1 1 44.00 44 23 8 11 2
....................................................CGCAGTATATTTTTGTGTTTTGA........................................................................................ 23 1 1 43.00 43 13 17 8 5
....................................................CGCAGTATATTTTTGTGTGTTG......................................................................................... 22 1 1 43.00 43 0 43 0 0
...........................................................................................AATCACAGGATTATACTGTG.................................................... 20 0 1 42.00 42 14 0 1 27
....................................................CGCAGTATATTTTTGTGTTCTG......................................................................................... 22 1 1 39.00 39 26 13 0 0
....................................................AGCAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 37.00 37 30 4 3 0
....................................................CGCAGTATATTTTTGTGTTTCG......................................................................................... 22 1 1 36.00 36 19 15 2 0
....................................................CGCAGAATATTTTTGTGTTTTG......................................................................................... 22 1 1 34.00 34 24 9 0 1
....................................................CGCAGTATACTTTTGTGTTTTG......................................................................................... 22 1 1 32.00 32 19 10 3 0
....................................................TGCAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 32.00 32 15 5 6 6
....................................................CGCAGTATATTTTTTTGTTTTG......................................................................................... 22 1 1 29.00 29 15 6 0 8
....................................................CACAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 29.00 29 19 5 2 3
....................................................CGCAGTATATTTTTGTGT............................................................................................. 18 0 1 29.00 29 23 0 5 1
....................................................CGCAGCATATTTTTGTGTTTTG......................................................................................... 22 1 1 29.00 29 19 6 2 2
....................................................CGCAGTATATCTTTGTGTTTTG......................................................................................... 22 1 1 28.00 28 19 6 2 1
....................................................CGCGGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 28.00 28 12 12 3 1
....................................................CGCAGTACATTTTTGTGTTTTG......................................................................................... 22 1 1 28.00 28 13 10 4 1
....................................................CGCAGTATATTTTCGTGTTTTG......................................................................................... 22 1 1 28.00 28 15 8 2 3
....................................................CGCAGTATGTTTTTGTGTTTTG......................................................................................... 22 1 1 27.00 27 11 9 7 0
....................................................CGCCGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 27.00 27 4 7 3 13
....................................................CGCAGTAAATTTTTGTGTTTTG......................................................................................... 22 1 1 27.00 27 25 2 0 0
....................................................CCCAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 26.00 26 8 11 4 3
....................................................CGCAGTCTATTTTTGTGTTTTG......................................................................................... 22 1 1 26.00 26 10 8 1 7
....................................................CGCAGTATAATTTTGTGTTTTG......................................................................................... 22 1 1 26.00 26 21 2 3 0
...........................................................................................AATCACAGGATTATACTG...................................................... 18 0 1 25.00 25 8 0 14 3
....................................................CGCAGTATATTTTTGTTTTTTG......................................................................................... 22 1 1 23.00 23 16 5 0 2
....................................................CGCAATATATTTTTGTGTTTTG......................................................................................... 22 1 1 23.00 23 12 8 1 2
....................................................CGCAGTATATTTTTGTTTTG........................................................................................... 20 2 2 22.50 45 23 16 3 3
.......................................................AGTATATTTTTGTGTTTTG......................................................................................... 19 0 1 22.00 22 3 5 3 11
....................................................CGAAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 22.00 22 17 4 1 0
......................................................CAGTATATTTTTGTGTTTTG......................................................................................... 20 0 1 22.00 22 5 5 1 11
....................................................CGCATTATATTTTTGTGTTTTG......................................................................................... 22 1 1 22.00 22 15 3 2 2
....................................................CGCAGTATATTTTTGTGTTTTT......................................................................................... 22 1 1 21.00 21 10 4 2 5
....................................................CGCAGTATATTTTTGTGTTG........................................................................................... 20 1 1 21.00 21 12 4 3 2
............................................................................................ATCACAGGATTATACTGTGA................................................... 20 0 1 20.00 20 0 0 0 20
....................................................CGCAGTATATTTCTGTGTTTTG......................................................................................... 22 1 1 20.00 20 15 5 0 0
....................................................CGCAGTATATTCTTGTGTTTTG......................................................................................... 22 1 1 19.00 19 11 5 1 2
....................................................CGCAGTGTATTTTTGTGTTTTG......................................................................................... 22 1 1 18.00 18 12 3 3 0
....................................................CGCAGTATATTTTTGTGTTTTA......................................................................................... 22 1 1 17.00 17 11 5 1 0
....................................................CGCAGTATATTTTTGGGTTTTG......................................................................................... 22 1 1 15.00 15 4 6 1 4
....................................................CGCACTATATTTTTGTGTTTTG......................................................................................... 22 1 1 15.00 15 7 6 1 1
....................................................CGCAGTATATTTTTGTCTTTTG......................................................................................... 22 1 1 15.00 15 8 4 3 0
....................................................CGCAGTATATTTTTGTGATTTG......................................................................................... 22 1 1 15.00 15 13 2 0 0
.....................................................CCAGTATATTTTTGTGTTTTG......................................................................................... 21 1 1 14.00 14 7 4 1 2
....................................................CGCAGGATATTTTTGTGTTTTG......................................................................................... 22 1 1 14.00 14 7 5 0 2
....................................................CGCAGTATATTTTTGTGTTTTTG........................................................................................ 23 2 1 14.00 14 6 3 2 3
....................................................CGCAGTATATTTTTATGTTTTG......................................................................................... 22 1 1 14.00 14 5 7 2 0
....................................................CGCAGTATATTTTTCTGTTTTG......................................................................................... 22 1 1 13.00 13 7 3 1 2
....................................................CGCAGTATTTTTTTGTGTTTTG......................................................................................... 22 1 1 13.00 13 3 9 1 0
....................................................CGCAGTATATTTTTGTGTTATG......................................................................................... 22 1 1 13.00 13 12 1 0 0
............................................................................................ATCACAGGATTATACTGT..................................................... 18 0 1 12.00 12 0 0 0 12
....................................................CGCAGTATATTTTTGAGTTTTG......................................................................................... 22 1 1 12.00 12 3 2 4 3
...........................................................................................AATCACAGGATTATACTGTGAGT................................................. 23 1 1 11.00 11 7 1 3 0
....................................................GGCAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 11.00 11 10 1 0 0
........................................................GTATATTTTTGTGTTTTG......................................................................................... 18 0 1 11.00 11 5 2 2 2
....................................................CGTAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 10.00 10 6 1 3 0
....................................................CGCAGTATATTTTTGTGTTTTC......................................................................................... 22 1 1 10.00 10 6 4 0 0
.....................................................GCAGTATATTTTTGTGTTTT.......................................................................................... 20 0 1 10.00 10 2 1 0 7
...........................................................................................AATCACAGGATTATACTGA..................................................... 19 1 1 9.00 9 3 1 1 4
....................................................CGCAGTATATTTTTGTGTTTAG......................................................................................... 22 1 1 9.00 9 8 1 0 0
....................................................CGCAGTATATATTTGTGTTTTG......................................................................................... 22 1 1 9.00 9 5 1 3 0
....................................................CGCAGTTTATTTTTGTGTTTTG......................................................................................... 22 1 1 8.00 8 5 1 2 0
....................................................CGCAGTATATTATTGTGTTTTG......................................................................................... 22 1 1 8.00 8 4 1 1 2
....................................................CGCAGTATATTTTTGTATTTTG......................................................................................... 22 1 1 8.00 8 7 1 0 0
....................................................CGCAGTATATTTTTGTGGTTTG......................................................................................... 22 1 1 7.00 7 3 4 0 0
...........................................................................................AATCATAGGATTATACTGTGA................................................... 21 1 1 7.00 7 0 0 7 0
....................................................CGCAGTATATTTTTGTGTTTGG......................................................................................... 22 1 1 7.00 7 2 1 0 4
............................................................................................ATCACAGGATTATACTGTGAGT................................................. 22 1 1 6.00 6 1 0 2 3
...........................................................................................AATCACAGGATTATACTGTGAA.................................................. 22 1 1 6.00 6 0 0 0 6
................................GGAATCACGTCTCGACGCCT............................................................................................................... 20 0 1 6.00 6 0 0 0 6
...................................................CCGCAGTATATTTTTGTGTTTTG......................................................................................... 23 1 1 6.00 6 4 0 0 2
....................................................CGCTGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 6.00 6 3 1 2 0
...........................................................................................AATCACAGGATTATACTGAG.................................................... 20 1 1 5.00 5 2 0 1 2
...................................................TCGCAGTATATTTTTGTGTTTTG......................................................................................... 23 0 1 5.00 5 3 0 1 1
....................................................CGGAGTATATTTTTGTGTTTTG......................................................................................... 22 1 1 5.00 5 1 2 1 1
....................................................CGCAGTATATTTTTGTGTTTTTTG....................................................................................... 24 2 1 5.00 5 4 0 1 0
............................................................................................ATCACAGGATTATACTGTGAGA................................................. 22 0 1 5.00 5 0 0 0 5
................................................................................................CAGGATTATACTGTGAGA................................................. 18 0 1 5.00 5 0 0 2 3
....................................................CGCAGTATATTTTTGCGTTTT.......................................................................................... 21 1 1 4.00 4 3 1 0 0
...........................................................................................AATCACAGGATTATACTGTGT................................................... 21 1 1 4.00 4 3 1 0 0
....................................................CGCAGTATATTTTTGTTTTTG.......................................................................................... 21 2 2 4.00 8 3 3 2 0
...........................................................................................AATTACAGGATTATACTGTGA................................................... 21 1 1 4.00 4 1 0 2 1
...............................................................................................ACAGGATTATACTGTGAG.................................................. 18 0 1 4.00 4 0 0 2 2
..............................................................................................CACAGGATTATACTGTGAG.................................................. 19 0 1 4.00 4 0 0 1 3
....................................................CGCAGAATATTTTTGTGTTTTA......................................................................................... 22 2 1 3.00 3 3 0 0 0
...........................................................................................AATCACCGGATTATACTGTGA................................................... 21 1 1 3.00 3 0 0 0 3
....................................................CGCAGTATCTTTTTGTGTTGTG......................................................................................... 22 2 1 3.00 3 0 0 0 3
...........................................................................................AATCACAGGATTATACTGTT.................................................... 20 1 1 3.00 3 2 0 0 1
....................................................CGCAGTATAACTTTGTGTTTTG......................................................................................... 22 2 1 3.00 3 3 0 0 0
...........................................................................................AATCACAGGATTATATTGT..................................................... 19 1 1 3.00 3 0 0 2 1
....................................................CGCAGTATATTTTTGTGTTGTG......................................................................................... 22 1 1 3.00 3 3 0 0 0
....................................................CGCAGTATATTTTGGTGTTTTG......................................................................................... 22 1 1 3.00 3 0 0 1 2
....................................................CGCAGTATATCTTTGTGTTTT.......................................................................................... 21 1 1 3.00 3 1 0 2 0
...........................................................................................AATCACAGGATTATACTGTGG................................................... 21 1 1 3.00 3 0 0 1 2
....................................................CGCAGTATATTTTAGTGTTTTG......................................................................................... 22 1 1 2.00 2 1 1 0 0
.....................................................GCAGTATATTTTTGTGTTTTGA........................................................................................ 22 1 1 2.00 2 1 0 0 1
...........................................................................................AATCACAGGACTATACTGTGA................................................... 21 1 1 2.00 2 1 0 1 0
...........................................................................................AATCACAGAATTATACTGTGA................................................... 21 1 1 2.00 2 1 0 1 0
...................................................TCGCAGTATATTTTTGTGTTTT.......................................................................................... 22 0 1 2.00 2 1 0 0 1
....................................................CGCAGTATATTTTTGTGTTTC.......................................................................................... 21 1 1 2.00 2 1 0 0 1
...........................................................................................AATCACAGGATTATACTGTTAG.................................................. 22 1 1 2.00 2 0 0 0 2
.....................................................GCAGTATATTTTTGTGTTTTT......................................................................................... 21 1 1 2.00 2 0 0 0 2
...........................................................................................AATCACAGGATTATACTTTGAG.................................................. 22 1 1 2.00 2 0 0 2 0
...........................................................................................AATCACAGGATTATACTTTGA................................................... 21 1 1 2.00 2 0 0 0 2
....................................................TGCAGTATATTTTTGTGTTTT.......................................................................................... 21 1 1 2.00 2 0 0 1 1
...........................................................................................AATCACAGGATTATACTGTGAT.................................................. 22 1 1 2.00 2 0 0 0 2
.....................................................GCAGTATATTTTTGTGTCTTG......................................................................................... 21 1 1 2.00 2 1 1 0 0
...........................................................................................AATCACAGGATTATACTGGGA................................................... 21 1 1 2.00 2 1 0 0 1
..........................................................................TTTCGTTTTGCAACTCAAA...................................................................... 19 0 1 2.00 2 0 0 2 0
...........................................................................................AATCACAGGATTATACTT...................................................... 18 1 1 2.00 2 2 0 0 0
.............................................................................................TCACAGGATTATACTGTGAGA................................................. 21 0 1 2.00 2 0 0 0 2
............................................................................................ATCACAGGATTATACTGTGAG.................................................. 21 0 1 2.00 2 0 0 0 2
....................................................CGCAGTATATTTATGTGTTTTG......................................................................................... 22 1 1 2.00 2 2 0 0 0
....................................................CGCAGAATATTTTTGTGTTTTT......................................................................................... 22 2 1 2.00 2 2 0 0 0
............................GGGGGGAATCACGTCTCGACGCCT............................................................................................................... 24 0 1 2.00 2 0 0 0 2
...........................................................................................AATCACAGGATTATATTGTGA................................................... 21 1 1 2.00 2 0 0 1 1
...........................................................................................AATCGCAGGATTATACTGT..................................................... 19 1 1 2.00 2 2 0 0 0
....................................................CGCAGTATATTTTTGTGTATTC......................................................................................... 22 2 1 2.00 2 0 2 0 0
...........................................................................................GATCACAGGATTATACTGT..................................................... 19 1 1 2.00 2 1 0 1 0
.....................................................GCAGTATATTTTTGTGTTT........................................................................................... 19 0 1 2.00 2 1 0 0 1
...........................................................................................AATAACAGGATTATACTGTGA................................................... 21 1 1 2.00 2 0 0 0 2
....................................................CGCAGTATATTTTTGTGTACTG......................................................................................... 22 2 1 2.00 2 2 0 0 0
...........................TGGGGGGAATCACGTCTCGACGCCT............................................................................................................... 25 0 1 2.00 2 0 0 0 2
..........................................................................................AAATCACAGGATTATACTGTGA................................................... 22 0 1 2.00 2 0 0 1 1
.....................................................GCAGTATATTTTTGTTTTTTG......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGCGTTTTT......................................................................................... 22 2 1 1.00 1 0 0 1 0
...........................................................................................AATCAGAGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 1 0 0 0
............................................................................................ATCACAGGATTATACTTTGA................................................... 20 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGACTATACTG...................................................... 18 1 1 1.00 1 0 0 1 0
.....................................................GCAGCATATTTTTGTGTTTTG......................................................................................... 21 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATCTTTTTGTGTTTT.......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................AGCAGAATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...................................................TCGCAGTATATTTTTGTGTTTTGTTTC..................................................................................... 27 0 1 1.00 1 0 1 0 0
....................................................CGCAGTATATTTTTGTGC............................................................................................. 18 1 1 1.00 1 1 0 0 0
...........................................................................................AATCATAGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 0 0 1 0
...........................................................................................TATCACAGGATTATACTGTGA................................................... 21 1 1 1.00 1 0 0 1 0
....................................................CGCAGTATATTTTTGTGTCTTGA........................................................................................ 23 2 1 1.00 1 0 1 0 0
....................................................CGCATTATATTTTTGTGTTT........................................................................................... 20 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACCGGATTATACTGTG.................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................ATCACAGGATTATACTGTGAGG................................................. 22 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATCCTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATCACAGGATTATACTGTTAGT................................................. 23 2 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTCATG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATCACAGGATTATACTGCGAG.................................................. 22 1 1 1.00 1 0 0 1 0
....................................................CGCAGTATATTTTTGTTTT............................................................................................ 19 1 1 1.00 1 0 0 0 1
....................................................CGCAGAATATTTTTGTGTTTTC......................................................................................... 22 2 1 1.00 1 1 0 0 0
.........................................................................................ACAATCACAGGATTATACTGT..................................................... 21 2 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTCCGTTTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
....................................................CGCAGTATATTTTTGTTTTTT.......................................................................................... 21 1 1 1.00 1 1 0 0 0
....................................................CGCAGCATATTTTTGTGTTTG.......................................................................................... 21 2 1 1.00 1 0 0 1 0
....................................................TGCAGTATATTTTTGTGTTTTT......................................................................................... 22 2 1 1.00 1 0 0 0 1
............................................................................................ATCACAGGATTACACTGTGAGA................................................. 22 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTATACTGG..................................................... 19 1 1 1.00 1 0 0 0 1
.....................................................GCAGTTTATTTTTGTGTTTTG......................................................................................... 21 1 1 1.00 1 0 0 0 1
.................................................................................................................ATGACCAGCGTGCCAGCAGCAA............................ 22 0 1 1.00 1 0 0 0 1
...........................................................................................AATCACCGGATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 1
.....................................................GCAGTATATTTTTGTGTT............................................................................................ 18 0 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTATACTGTTA................................................... 21 1 1 1.00 1 0 0 0 1
............................................................................................ATCACAGGATTATACTGAG.................................................... 19 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATACTTTTGTGCTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATAACAGGATTATACTGT..................................................... 19 1 1 1.00 1 1 0 0 0
....................................................CGCCGTACATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...................................................ACGCAGTATATTTTTGTGTTTTG......................................................................................... 23 1 1 1.00 1 0 0 0 1
....................................................CGAAGCATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................TGCCGTATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATCACAGGATTATACTGTCA................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGAGTTTT.......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGTT....................................................................................... 24 0 1 1.00 1 0 1 0 0
............................................................................................ATCACAGGATTATACTTTGAG.................................................. 21 1 1 1.00 1 0 0 0 1
......................................................CGGTATATTTTTGTGTTTTG......................................................................................... 20 1 1 1.00 1 0 1 0 0
...........................................................................................GATCACAGGATTATACTGTGAGT................................................. 23 2 1 1.00 1 0 0 1 0
....................................................CGCAGTATCATTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CTCAGTATATTTTTGTGTTTT.......................................................................................... 21 1 1 1.00 1 0 0 0 1
................................................................................TTTGCAACTCAAATCACAGGAT............................................................. 22 0 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTG............................................................................................ 19 1 1 1.00 1 0 1 0 0
.............................................................................................TCACAGGATTATACTGTGA................................................... 19 0 1 1.00 1 0 0 0 1
....................................................CCAAGTATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGAAGTATATTTTTGTGTTTTGT........................................................................................ 23 1 1 1.00 1 1 0 0 0
....................................................TGCAGTATATTTTTGTGTT............................................................................................ 19 1 1 1.00 1 0 0 1 0
.....................................................GCAGTATAATTTTGTGTTTTG......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCATTATATTCTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
.....................................................GCAGTATATTTTTGTGTTTTTG........................................................................................ 22 2 2 1.00 2 0 0 0 2
...........................................................................................AATCACAGGATTATACTGTAGA.................................................. 22 3 1 1.00 1 0 0 1 0
....................................................CGCAGCATATTTTTGTGTTTT.......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGG........................................................................................ 23 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTATACTGTGTT.................................................. 22 2 1 1.00 1 1 0 0 0
....................................................AGCAGTATATTTTTGTGTTT........................................................................................... 20 1 1 1.00 1 1 0 0 0
....................................................AGCAGTATATTTTTGTGTCTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
......................................................CAGTCTATTTTTGTGTTTTG......................................................................................... 20 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTGTCTCG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................TGCAGTATATTTTTGTGTCTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCGGCATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTGTTTTTGA....................................................................................... 24 3 1 1.00 1 0 0 0 1
............................................................................................ATCGCAGGATTATACTGTGAG.................................................. 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGAATATTTTTGTGCTTTG......................................................................................... 22 2 1 1.00 1 0 0 1 0
..............................GGGGAATCACGTCTCGACGCCT............................................................................................................... 22 0 1 1.00 1 0 0 0 1
....................................................CGCAGCATATTTTTGTGTTTTA......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATCACAGGATTATACTGTGAGC................................................. 23 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGC........................................................................................ 23 1 1 1.00 1 0 0 0 1
............................................................................................ATCACAGGATTATACTGTTAGT................................................. 22 2 1 1.00 1 0 0 0 1
....................................................AGCAGTATAATTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTCAGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTGGATTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATCACTGGATTATACTGTGA................................................... 21 1 1 1.00 1 0 0 1 0
...........................................................................................AATCACCGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTATACTGTA.................................................... 20 1 1 1.00 1 1 0 0 0
..........................................................................TTTCGTTTTGCAACTCAAAA..................................................................... 20 1 1 1.00 1 0 0 0 1
....................................................CGCAGTCTCTTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTCTGT............................................................................................. 18 1 1 1.00 1 0 1 0 0
...........................................................................................AATCACAGGATTATACTGC..................................................... 19 1 1 1.00 1 0 0 1 0
.....................................................GCAGTATATTTTTGTGTTG........................................................................................... 19 1 1 1.00 1 0 0 1 0
....................................................CGCAGTATATTTTTGTGGTTTT......................................................................................... 22 2 1 1.00 1 0 0 0 1
...........................................................................................AACCACAGGATTATACTGT..................................................... 19 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATAAATTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
...........................................................................................AATCACAGGATTATACAGTG.................................................... 20 1 1 1.00 1 0 0 0 1
....................................................CTCAGTATACTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CTCAGTATATTTTTGTTTTTTG......................................................................................... 22 2 1 1.00 1 0 0 0 1
....................................................CGCAGGATATTTTTGTGTTTTC......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTCTATTTTTGTGCTTTG......................................................................................... 22 2 1 1.00 1 0 0 1 0
...........................................................................................GATCACAGGATTATACTGTGAG.................................................. 22 1 1 1.00 1 0 0 1 0
....................................................CGCAGTATATTTTTGTGTTA........................................................................................... 20 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTGCTTT.......................................................................................... 21 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTATACCGTGA................................................... 21 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATCACTTTGTGTTTTG......................................................................................... 22 3 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTGTGT........................................................................................... 20 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGCCTTTTG......................................................................................... 22 2 1 1.00 1 0 0 1 0
....................................................CTCAGTATATTTTTGTGTATTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
...........................................................................................AATCACAGGATGATACTGT..................................................... 19 1 1 1.00 1 0 0 1 0
...............................GGGAATCACGTCTCGACGCCT............................................................................................................... 21 0 1 1.00 1 0 0 0 1
....................................................CGAAGTATATTTTTGTGTTTT.......................................................................................... 21 1 1 1.00 1 1 0 0 0
....................................................CGCCGGATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGTTTATACTGTGA................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CTCAGTATATTTTTGCGTTTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
....................................................GGCAGTATATTTTTGTGGTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
.........................................................................................ACAATCACAGGATTATACTGTGA................................................... 23 2 1 1.00 1 0 0 0 1
...............................................................................................ACAGGATTATACTGTGAGT................................................. 19 1 1 1.00 1 1 0 0 0
....................................................CGCAGTAAATCTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTGTC............................................................................................ 19 1 1 1.00 1 0 1 0 0
....................................................CGCATTATATTTTTGCGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCAGTATACTTTTGTGTTTT.......................................................................................... 21 1 1 1.00 1 0 0 1 0
.................................................ATCCGCAGTATATTTTTGTGTTTTG......................................................................................... 25 3 1 1.00 1 0 0 1 0
....................................................CGCAGTATATTCTTGTGTT............................................................................................ 19 1 1 1.00 1 1 0 0 0
....................................................CGCACTATATTTTTGTGTCTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
......................................................CAGTATATTTTTGTGTTT........................................................................................... 18 0 1 1.00 1 0 0 0 1
....................................................CGCAGTATATGTTTGTGTTTTG......................................................................................... 22 1 1 1.00 1 0 0 1 0
....................................................CGCAGTATAATTTTGTGTTT........................................................................................... 20 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATCTTTTTGAGTTTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
.........................................................................................CAAATCACAGGATTATACTGTG.................................................... 22 0 1 1.00 1 0 0 0 1
......................................................CAGTATATTTTTGTGTTTTGTTTC..................................................................................... 24 0 1 1.00 1 0 0 1 0
...........................................................................................AATCACAGGATTATACTTT..................................................... 19 1 1 1.00 1 1 0 0 0
....................................................CGCACTATATTTCTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGCCGTATATTTTTGTGTTTTGT........................................................................................ 23 1 1 1.00 1 0 0 0 1
....................................................CGCAGCATATTTTTGTGTTTTGT........................................................................................ 23 1 1 1.00 1 1 0 0 0
.......................................................AGTATATTTATGTGTTTTG......................................................................................... 19 1 1 1.00 1 1 0 0 0
...........................................................................................AATCACAGGATTATACTGTGAGG................................................. 23 1 1 1.00 1 0 0 1 0
...........................................................................................AATCACACGATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATCTTTTTGCGTCTTG......................................................................................... 22 3 1 1.00 1 0 0 1 0
...............................................................................................ACAGGATTATACTGTGAGC................................................. 19 1 1 1.00 1 0 0 0 1
....................................................CTCAGTATATTTTTGTGTTT........................................................................................... 20 1 1 1.00 1 0 0 1 0
...........................................................................................AATCACAGGATTACACTGTGA................................................... 21 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATATTTTTGTTTTT........................................................................................... 20 1 1 1.00 1 1 0 0 0
....................................................CGCAGTATATCATTGTGTTTTG......................................................................................... 22 2 1 1.00 1 0 0 1 0
.....................................................CCAGCATATTTTTGTGTTTTG......................................................................................... 21 2 1 1.00 1 0 0 1 0
.....................................................GCAGTATATTTATGTGTTTTG......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGCATATTTTTGTGTTTCG......................................................................................... 22 2 1 1.00 1 0 1 0 0
...........................................................................................AGTCACAGGATTATACTGTGA................................................... 21 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTTTACTGTGA................................................... 21 1 1 1.00 1 1 0 0 0
....................................................AGCAGTATATTTTTGTATTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
..............................................................................................CACAGGACTATACTGTGAGA................................................. 20 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTCTGTGTTTT.......................................................................................... 21 1 1 1.00 1 1 0 0 0
.................................................................................TTGCAACTCAAATCACAGGATTATACTGT..................................................... 29 0 1 1.00 1 0 1 0 0
...........................................................................................AATCACAGGATTATAATGTGA................................................... 21 1 1 1.00 1 1 0 0 0
....................................................CGGAGTATATTTTTGTGTTTT.......................................................................................... 21 1 1 1.00 1 0 0 0 1
....................................................CGCAGGGTATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
....................................................CGCAGTATCTTTTTGTGTGTTG......................................................................................... 22 2 1 1.00 1 0 1 0 0
....................................................CGCAGTAACTTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 0 0 1 0
...........................................................................................AATCACAGGATTATATTGTGAA.................................................. 22 2 1 1.00 1 0 0 1 0
....................................................AGCGGTATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
....................................................CGTATTATATTTTTGTGTTTTG......................................................................................... 22 2 1 1.00 1 1 0 0 0
.................................................................................................AGGATTATACTGTGAGTT................................................ 18 1 1 1.00 1 0 0 0 1
..........................................................................................TAATCACAGGATTATACTGTGA................................................... 22 1 1 1.00 1 0 0 0 1
....................................................CGCAGTATATTTTTGTGTTTTGTTTC..................................................................................... 26 0 1 1.00 1 0 0 1 0
..................................................TCCGCAGTATATTTTTGTGTTTTG......................................................................................... 24 2 1 1.00 1 1 0 0 0
............................................................................................ATCACAGGATTATACTGTGAGC................................................. 22 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGCATTATACTGT..................................................... 19 1 1 1.00 1 0 0 0 1
...........................................................................................AATCACAGGATTATACTCT..................................................... 19 1 1 1.00 1 0 0 0 1

Anti-sense strand reads

GGGATTGTATCTTCACCACCCCCTACCACCCCCCTTAGTGCAGAGCTGCGGAGCGTCATATAAAAACACAAAACAAAGCAAAACGTTGAGTTTAGTGTCCTAATATGACACTCTACTGGTCGCACGGTCGTCGTTTTTCGCTTACTATAATATAGTTAATATA

************************************((((.((...((.(((((((((((.(((((((.((((....((...))....)))).))))))).))))))))))).))...))))))..************************************* 		Read size # Mismatch Hit Count Total Norm Total V114

embryo
.....................................................................................................................GGTCGCTCGGTCGTCGAT............................ 18 2 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_1:7611653-7611815 - dse-mir-308 Known_mirbase CCCTA--------ACATAGAA--GTG---GTGG------------------------GG--------G------A---TG-----------GTG------GGGGGA--ATC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCAA---------AA----AGCGAATGAT--------A---------------------T-TATATC-----AAT--TATAT
droSim2 2r:10806875-10807037 - dsi-mir-308 Known_mirbase CCCTA--------ACATAGAA--GTG---GTGG----------------------------------G------A---TG-----------GTG------GGGGGAATCAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCAG---------AA----AGCGAATGAT--------A---------------------T-GATATC-----AAT--AATAT
dm3 chr2R:10103257-10103436 - dme-mir-308 Known_mirbase CCCCA--------CCATTGAA--GTG---CTAT----------------------------------GCCCGCCA---TCCGGATGAGATGGCG------GGGTTAATAAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCGA---------AA----AGCGACTGAT--------A---------------------T-GATATC-----AAT--TATAT
droEre2 scaffold_4845:15739181-15739365 + der-mir-308 Known_mirbase CCCTTCCTCC---CCACCAAA--GTG---CTTT----------------------------------GCCCGCCG---TCCGGATGATA---TG------GGGGGAATCAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAAATCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCGCCAGCAGCAG---------AA----AGTGACTGAC--------C---------------------A-GATTTG-----TAT--TATAT
droYak3 2R:10041097-10041279 - dya-mir-308 Known_mirbase CCCTC--TTTTCACTATGGAA--GTG---CTTT----------------------------------GCCCGCCA---TCCGGATGAGA---TG------GGGGGAATCAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCCT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCAG---------AA----AGTGACTGAC--------A---------------------A-GATCTG-----TAT--TATAA
droEug1 scf7180000409462:2740188-2740331 + CTCCA--------ACCCAGAA--GTG--------------------------------------------------------------------------------ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TTTGTAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAGCGA---------AT----AATGAATAAA--------A---------------------A-G-TGTA-----AAT--TATTC
droBia1 scf7180000301506:3161407-3161574 + CTGGC---------CTCAGAGTTGTG---TTAT----------------------------------GCCCCCCA---TCCAGA---------G------AAGAG-AACCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTAG-GC-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGCC---AGCAGCAG---------AA----AGGGATTGAA--------G---------------------C-G-TATT-----TAT--TA-AT
droTak1 scf7180000414111:5696-5856 - CCTAA--------CTGCAGAA--GTG---CTTC-----------------------------------------------------------CGAAGTCAT--CG-ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-GT-TCTGAAACTCAAATCACAGGATTATACTGTGAGCTGACCAGCGTGCC---AGCAGCAA---------GA----AGTTTATAGG--------A---------------------TGGATTTG-----AAT--TATAT
droEle1 scf7180000491349:772073-772232 + TCCTC---------CGCAAAA--GTG---TTTGCC---------------------------------------A---TC-----------CCG------GAGAG-ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAGCCA---------AG----AGTGAATGGA--------A---------------------CTGGTTTG-----AG---CA-AC
droRho1 scf7180000777200:420712-420869 - CTTTA-----------TAGAA--GTG---TGTTCC---------------------------------------G---TT-----------CTG------GAGAG-ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTC-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAGCGA---------AG----AGTTTATGAA--------A---------------------TTGGTTCT------AG--TA-AT
droFic1 scf7180000453948:328408-328568 + TCCCA------------AGAA--GTG---TTATCC-------------------------------------ACA---TC-----------CCG------AAGAG-AACCC---AC------GTCTCGACGACTCGCAGTATATTTTTGTGTTTTGTTG-GT-TTTGGAACTCAAATCACAGGATTATACTGTGAGCTGACAAGCGTGCC---AGCAACCA---------AA----GAAATCTAAA--------A---------------------CGGTTTGG-----AAT--TAAAT
droKik1 scf7180000302385:233907-234065 - CCCCC--------CC-GCAAA--GTG---CTTCCT---------------------------------------C---TCC------------G------A--AG-AACCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TGTTTGAAAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAACAG---------CA----GCAGCATAAT--------T---------------------A-GCCTTT-----AAT--TATAG
droAna3 scaffold_13266:5819946-5820100 + dan-mir-308 Known_mirbase CTCTA--------CC--------------------------------------------------------------------------------------------ATCC---AT------GTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GG-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTC---AGCAGCTG---------AA----ACAGTGCATAATTAAAGAATCCTATTTGCCC---------A-ACTATG-----CTA--GATAT
droBip1 scf7180000396372:434902-435065 + ACTAA--------AC---AAG--GTG---ATATCACTCCT--------------------------------AC---------------------------------ATCC---AT------GTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTC---AGCAGCCG---------AATATCAGCAATTCA-------ATAT----------------CTAAT-ATATCT-----AAT--TATAC
dp5 3:16336961-16337116 - dps-mir-308 Known_mirbase CTCCA--------------AA--GTG---TTTTCC----------------------------------TAGGTG---TG-----------CCG-------AAAG-AAGCG---GC------GTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCT---ATCAAGAG---------AG----TGTGAACG----------------------------------GAACCC-----AAG--TGTAT
droPer2 scaffold_4:426221-426375 + dpe-mir-308 Known_mirbase CTCCA--------------AT--GTG---TTTTCC----------------------------------TAGGTG---TG-----------CCG-------AAAG-AATCG---GC------GTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCT---ATCAGAGA------------------GTGTGAA--------A---------------------G-GAACCC-----AAG--TGTAT
droWil2 scf2_1100000004513:1860885-1861058 + dwi-mir-308 Known_mirbase CAACA-----------CCAAC--ATG---CTGG------------------------AT--------A------CTGATTAAGGCTC----------TCGT--CG-AC--C---ACAGACTATTCTTG-CGTCTCGCAGTATATTTTTGTGTTTTGTTC-AATTTGTCAACTCAAATCACAGGATTATACTGTGAGCTGCGAAATGGAA----ATCCACGC---------AA----CC-ATTTTA-------AAAT----------------CAAAT-----TG-----ACTTAAATGT
droVir3 scaffold_12875:17605259-17605412 + dvi-mir-308 Known_mirbase CTTTA--------TT---TAT--TTATTGTTATTT-------------------------------------TAA---TTT------------G------T-----AGCCA-ACGC-------ATTCGATGTCTCGCAGTATACTTTTGTGTTTTGTTT-AT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGTAGC---AACAACAA---------AA----ATCCA---------------------------------------TTTT--AGACAC--AAAGC
droMoj3 scaffold_6496:11229018-11229187 + dmo-mir-308 Known_mirbase TTTAT---------TCTAAAT--TTG---TTAA----------------------------------GATTTTAA---TTTGAATTATT--------------TG-AA--C---AC------A-TTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAAAC---AACAACAA---------AT----T--GAATTAA-------AA---------------------T-CATCTGCTAGCTAT--CATAT
droGri2 scaffold_15245:14076189-14076384 - dgr-mir-308 Known_mirbase CATTA---------TTTAGAA--GTG---TTTTCAATTTGATATACATATATAGATAGATCTGTTAAG----------------------------------------CCCACCAC-------TGTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATC------GCC---AGCAGCAAGGACAACCAAA----TTTTA------------------ATTTACCCAAATACAA-T-T-ACAC-----AAA--TATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CCCTA--------ACATAGAA--GTG---GTGG------------------------GG--------G------A---TG-----------GTG------GGGGGA--ATC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCAA---------AA----AGCGAATGAT--------A---------------------T-TATATC-----AAT--TATATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................22136133.0036133164311915299519580
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................211638.0063827225135206
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191530.0053014318187182
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................211375.00375857151168
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................211334.003341347819103
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................201150.001509401091
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19171.0071633230
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................22163.0063461106
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................23156.0056829415
......................................................................................................................................CGCAGTATATTTTTGTGTTTG................................................................................................................................................21144.0044281123
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................23143.0043517813
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20142.0042270114
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................18129.002910523
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................18125.002530148
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................19122.002211533
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................20122.002211515
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22121.002154210
......................................................................................................................................CGCAGTATATTTTTGTGTTG.................................................................................................................................................20121.002124312
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................20120.002020000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................22117.001705111
......................................................................................................................................CGCAGTATATTTTTGTGTTTTTG..............................................................................................................................................23114.00143326
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18112.001212000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................23111.00110137
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................18111.00112225
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................22110.00100406
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................20110.00107102
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1919.0094113
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2216.0063021
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................2216.0066000
.......................................................................................................GGA--ATC---AC------GTCTCGACGCCT.....................................................................................................................................................................2016.0066000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2315.0051013
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2215.0055000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1815.0053020
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2114.0040103
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1814.0042020
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................1914.0043010
..............................................................................................................................................................................AATCACAGGATTATACTGTT.........................................................................................................2013.0031002
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2113.0032010
.......................................................................................................................................GCAGTATATTTTTGTGTTTTGA..............................................................................................................................................2212.0021001
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTT................................................................................................................................................2212.0021001
......................................................................................................................................CGCAGTATATTTTTGTGTTTC................................................................................................................................................2112.0021001
.......................................................................................................................................GCAGTATATTTTTGTGTTTTT...............................................................................................................................................2112.0022000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2212.0022000
............................................................................................................................................................TTTCGT-TTTGCAACTCAAA...........................................................................................................................1912.0020020
..............................................................................................................................................................................AATCACAGGATTATACTT...........................................................................................................1812.0020002
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................2112.0022000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2112.0022000
.............................................................................................G------GGGGGA--ATC---AC------GTCTCGACGCCT.....................................................................................................................................................................2412.0022000
.......................................................................................................................................GCAGTATATTTTTGTGTTT.................................................................................................................................................1912.0021001
............................................................................................TG------GGGGGA--ATC---AC------GTCTCGACGCCT.....................................................................................................................................................................2512.0022000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2212.0021010
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTGTTTC...........................................................................................................................................2711.0010100
......................................................................................................................................CGCAGTATATTTTTGTGC...................................................................................................................................................1811.0010001
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGG......................................................................................................2211.0011000
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................1911.0011000
....................................................................................................................................................................................................ATGACCAGCGTGCC---AGCAGCAA---------.....................................................................2211.0011000
.......................................................................................................................................GCAGTATATTTTTGTGTT..................................................................................................................................................1811.0011000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2411.0010100
...................................................................................................................................................................TTTGCAACTCAAATCACAGGAT..................................................................................................................2211.0011000
......................................................................................................................................CGCAGTATATTTTTGTGTG..................................................................................................................................................1911.0010100
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................1911.0011000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTTG..............................................................................................................................................2221.0022000
..............................................................................................................................................................................AATCACAGGATTATACTGTAGA.......................................................................................................2211.0010010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGG..............................................................................................................................................2311.0011000
..............................................................................................................................................................................AATCACAGGATTATACTGTGTT.......................................................................................................2211.0010001
......................................................................................................................................CGCAGTATATTTTTGTGTTTTTGA.............................................................................................................................................2411.0011000
.....................................................................................................GGGGA--ATC---AC------GTCTCGACGCCT.....................................................................................................................................................................2211.0011000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................2311.0011000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2311.0011000
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................2011.0010001
............................................................................................................................................................TTTCGT-TTTGCAACTCAAAA..........................................................................................................................2011.0011000
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................1911.0010010
.......................................................................................................................................GCAGTATATTTTTGTGTTG.................................................................................................................................................1911.0010010
......................................................................................................................................CGCAGTATATTTTTGTGTTA.................................................................................................................................................2011.0010001
......................................................................................................GGGA--ATC---AC------GTCTCGACGCCT.....................................................................................................................................................................2111.0011000
..................................................................................................................................................................................ACAGGATTATACTGTGAGT......................................................................................................1911.0010001
......................................................................................................................................CGCAGTATATTTTTGTGTC..................................................................................................................................................1911.0010100
........................................................................................................................................CAGTATATTTTTGTGTTT.................................................................................................................................................1811.0011000
............................................................................................................................................................................CAAATCACAGGATTATACTGTG.........................................................................................................2211.0011000
........................................................................................................................................CAGTATATTTTTGTGTTTTGTTTC...........................................................................................................................................2411.0010010
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGG......................................................................................................2311.0010010
..................................................................................................................................................................................ACAGGATTATACTGTGAGC......................................................................................................1911.0011000
....................................................................................................................................................................TTGCAACTCAAATCACAGGATTATACTGT..........................................................................................................2911.0010100
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTTC...........................................................................................................................................2611.0010010
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGC......................................................................................................2211.0011000
droSim2
CCCTA--------ACATAGAA--GTG---GTGG----------------------------------G------A---TG-----------GTG------GGGGGAATCAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCAG---------AA----AGCGAATGAT--------A---------------------T-GATATC-----AAT--AATATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2219252.009252514191202396127486214610558937038157321045001
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2116064.00606483536253215765822451122374510700000
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1812799.0027991005010015712706000000
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................1912483.0024831003341207244501318761800000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................2211611.0016111011923138392204955922000
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................1811024.00102451411318519112123182100000
...................................................................................................................................................................................CAGGATTATACTGTGAG.......................................................................................................171733.00733000000331627684000000
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................201703.007034112316274002890500000
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................191614.0061400002762291002105100000
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................181558.005580000275217101062200000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................231558.0055800020044252832004000000
....................................................................................................................................................................................AGGATTATACTGTGAG.......................................................................................................161530.00530000000514417695164000000
..............................................................................................................................................................................AATCACAGGATTATACT............................................................................................................171529.0052900000015956103346000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................211503.00503100245250242150431934050000
..................................................................................................................................................................................ACAGGATTATACTGTGA........................................................................................................171448.00448000000121246387000000
..................................................................................................................................................................................ACAGGATTATACTGT..........................................................................................................151392.003920000000000392000000
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................182325.006500000200010646100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................231314.003140001001465294210000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................231271.002710002002932118755307000
............................................................................................................................................................TTTCGT-TTTGCAACTCAAA...........................................................................................................................191245.00245003100514387573000000
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................191203.002030002000021198000000
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................191198.00198136292700000005100000
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................191191.00191104434300000001000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................221146.00146000300394432253000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................211113.0011300017010001831100000
............................................................................................................................................................TTTCGT-TTTGCAACT...............................................................................................................................153100.00300000000864991560000000
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20189.0089141016320110535200000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................22183.008310040020402015100000
......................................................................................................................................CGCAGTATATTTTTGT.....................................................................................................................................................16177.0077000000000077000000
.....................................................................................................................................................................................GGATTATACTGTGAG.......................................................................................................15177.00770000000372443000000
...................................................................................................................................................................................CAGGATTATACTGTGA........................................................................................................16171.0071000000017360000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................22162.0062010000000061000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................23157.00570013191710624013000
............................................................................................................................................................TTTCGT-TTTGCAACTCAAAA..........................................................................................................................20155.005500100014323112100000
.................................................................................................................................................................................CACAGGATTATACTGT..........................................................................................................16147.0047000000000047000000
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................19245.5091000200000089000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22141.0041000100001043500000
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................21139.00392021030000202000000
....................................................................................................................................................................................AGGATTATACTGTGA........................................................................................................15137.0037000000261946000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGT......................................................................................................19136.0036000000000234000000
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................21134.003410000099951000000
..............................................................................................................................................................................AATCACAGGATTATA..............................................................................................................15131.0031000000100030000000
............................................................................................................................................................TTTCGT-TTTGCAACTCAA............................................................................................................................18228.505700000019127181000000
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18127.0027000200000025000000
............................................................................................................................................................TTTCGT-TTTGCAACTCAAAAA.........................................................................................................................21426.001040000007952342000000
............................................................................................................................................................TTTCGT-TTTGCAACTCA.............................................................................................................................17225.00500000002223221000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGA......................................................................................................19121.0021000000003711000000
..................................................................................................................................................................................ACAGGATTATACTGTGAA.......................................................................................................18120.0020000000000119000000
.................................................................................................................................................................................CACAGGATTATACTGTGA........................................................................................................18120.0020000100002314000000
......................................................................................................................................CGCAGTATATTTTTGTG....................................................................................................................................................17119.0019000000010018000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................20119.0019000170001100000000
..........................................................................................................................................GTATATTTTTGTGTTTT................................................................................................................................................17217.0034000000000034000000
.........................................................................................................AATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................20113.001342000000007000000
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................20113.001300041000106100000
....................................................................................................................................................................................AGGATTATACTGTGAGA......................................................................................................17112.001200000012900000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGC......................................................................................................19112.0012000000000012000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................21111.001100010000505000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................22111.001100000001208000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGAA.............................................................................................................................................24111.001100000012430001000
...........................................................................................................................................TATATTTTTGTGTTTTG...............................................................................................................................................17510.2051000000000051000000
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................19110.001010000002511000000
............................................................................................................................................ATATTTTTGTGTTTTG...............................................................................................................................................1689.3875000000000174000000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1819.00901100000124000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2419.00900006110010000000
..................................................................................................................................................................................ACAGGATTATACTGTGAT.......................................................................................................1819.00900000000108000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGAAA............................................................................................................................................2519.00900000000710001000
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2018.00800020000006000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2318.00800011310002000000
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................2018.00821300000110000000
..................................................................................................................................................................................ACAGGATTATACTGTG.........................................................................................................1617.00700000000016000000
.............................................................................................................................................TATTTTTGTGTTTTG...............................................................................................................................................1586.7554000000000054000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTT.................................................................................................................................................2116.00600004200000000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGGG.....................................................................................................2016.00600000000006000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................2316.00600000000114000000
..............................................................................................................................................................................AATCACAGGATTATACTTGA.........................................................................................................2095.67510000001062861000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTAA..............................................................................................................................................2325.501100000000550100000
..........................................................................................................ATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................1915.00521000000002000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGAA.....................................................................................................2415.00500000001220000000
..............................................................................................................................................................................AATCACAGGATTATACTA...........................................................................................................1815.00500000002021000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2215.00500000001202000000
...........................................................................................................TCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................1815.00510400000000000000
............................................................................................................................................................TTTCGT-TTTGCAACTC..............................................................................................................................1624.50900000023220000000
...................................................................................................................................................................................CAGGATTATACTGTGAGGG.....................................................................................................1914.00400000000004000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTTG..............................................................................................................................................2314.00400000000004000000
.................................................................................................................................................................................CACAGGATTATACTG...........................................................................................................1514.00400000000004000000
......................................................................................................................................CGCAGTATATTTTTGTGTTAA................................................................................................................................................2114.00400000000310000000
.................................................................................................................................................................................CACAGGATTATACTGTGAGA......................................................................................................2014.00400000000400000000
........................................................................................................................................CAGTATATTTTTGTGTTTT................................................................................................................................................1914.00400000000004000000
...................................................................................................................................................................................CAGGATTATACTGTGAGT......................................................................................................1814.00401000010002000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTC.....................................................................................................2414.00400000000004000000
.....................................................................................................................................TCGCAGTATATTTTTGTG....................................................................................................................................................1814.00400001300000000000
.....................................................................................................................................TCGCAGTATATTTTTGTGT...................................................................................................................................................1914.00400002000002000000
...................................................................................................................................................................................CAGGATTATACTGTGAGC......................................................................................................1814.00400000000004000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTT................................................................................................................................................2214.00400000000102100000
......................................................................................................................................CGCAGTATATTTTTGTGTTG.................................................................................................................................................2013.00320000000001000000
........................................................................................................GAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2113.00300100010001000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTG................................................................................................................................................2113.00300000000003000000
..............................................................................................................................................................................AATCACAGGATTATACTT...........................................................................................................1813.00310000000002000000
................................................................................................................................................................................TCACAGGATTATACTGT..........................................................................................................1713.00300000000003000000
.......................................................................................................................................GCAGTATATTTTTGTGTT..................................................................................................................................................1813.00300002000001000000
.........................................................................................................................................AGTATATTTTTGTGTTTT................................................................................................................................................1822.50500000000005000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2212.00210000000001000000
.......................................................................................................................................GCAGTATATTTTTGTG....................................................................................................................................................1612.00200000000002000000
...............................................................................................................................................................................ATCACAGGATTATACTG...........................................................................................................1712.00200000000002000000
...............................................................................................................................................................................ATCACAGGATTATACT............................................................................................................1612.00200000000002000000
...................................................................................................................................................................................CAGGATTATACTGTG.........................................................................................................1512.00200000000011000000
....................................................................................................................................................................................AGGATTATACTGTGAGT......................................................................................................1722.00400000000121000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTT..................................................................................................................................................2012.00200001000001000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTT............................................................................................................................................2512.00200001100000000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGGA.....................................................................................................2012.00200000000002000000
.....................................................................................................................................................................................GGATTATACTGTGAGA......................................................................................................1612.00200000000110000000
...................................................................................................................................................................................CAGGATTATACTGTGAT.......................................................................................................1712.00200000000002000000
..............................................................................................................................................................................AATCACAGGATTATACTAC..........................................................................................................1912.00220000000000000000
..............................................................................................................................................................................AATCACAGGATTATAC.............................................................................................................1612.00200000000002000000
....................A--GTG---GTGG----------------------------------G------A---TG-----------GTG------GGGG...................................................................................................................................................................................................1912.00200000000002000000
......................................................................................................................................................................................GATTATACTGTGAGA......................................................................................................1512.00200000001001000000
..............................................................................................................................................................TCGT-TTTGCAACTCAAATCACAGGATT.................................................................................................................2712.00220000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2112.00200000000002000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGG..............................................................................................................................................2312.00200020000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGGA.........................................................................................................2012.00200000011000000000
dm3
CCCCA--------CCATTGAA--GTG---CTAT----------------------------------GCCCGCCA---TCCGGATGAGATGGCG------GGGTTAATAAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAATCCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCGA---------AA----AGCGACTGAT--------A---------------------T-GATATC-----AAT--TATATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................221669373.00669373000012868526431751211200177200178217691823313093013583918555574124268047422764145282676299781742980910581185280035694116148273415001925424000000000000000001892191692051128035142104215334528572720092134912422520917786193271325064736985171742715561822410120121081140204115131452365450531015316216931251881168887641622589239922351892269334424402399600000419418337155550105188406153403145648988397310333812104609213568189786631756621263901388261382211130879327223205000004741575813461110442834452141165138828276482475995414462458813313635742552957000052426415321527314837922295188575615334241887148126023634315251747272240048661487325132212941264139330723195119532724237430011292149971162771189182710544129171723187107464563459511246983074731140817790199898623032322261348523511867161237631068425824749814518542604996501440572211519843164232027062136839213187334766374176158701852132132832724326565911076699101203726547864
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................221454236.004542360000541562914013519108500000014220100230211261410122141418102573736113357192169373770000000000000000000000092945103274691701101371092706250713968762532511581817110625179224248204376916812241862354128318710679587156499679503172632913670500001100301001011771172590494733112231273558542717323350000117916816813921041357607610200175114041431236120622320065307000001046300000244700000000079297371210361276561019196684401431000011521024141385157529353421108122142046191814114118526119362391910467233243407235401331237415001099771723532301101101121012228131027355
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................211245631.00245631000062101915118816947200000303213041704468331303976910557741205284581391515446129301038122011913052000000000000000000000002616128543194632874717940612010929938253858444221351622614368218421011257649620784827051847396839263857884125106621443309111817120235240274815426902825525300658353268272415460640533743539166475335000001882202564750625182185802034101456990494598353954687881049217808324213025825335201006121363000006613600210010171428027222711862547519237545680002678000053326132242681122684815018311814358798983614766537513655212486354148478243272196147163113114577720814476852685346299405497994992252352624333213769252326531881581834449210460633422051857066610109111424691591172201911
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22120240.002024000000001000000000000164510091572450000000033414935369358914024622934316225136201092622341390000000000000000000000043251262250510295010460201300221281213106400000412510000000401150010000000494265201118187753660503454401362441121001008161021111025230131440580016021173802014364417911217200000933300220003530101001201000101100000672270764183299215186771547712919712621203794209495718463319512012713922202155623116199776333300081656021870321216419011311538130919122572300801120100112520300253551
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................21118844.0018844000000000011100000006420318334611620412334335293334198130291139234682140219552700092000000000000000000334125570800117181221722215811106351101716235951813170210102000011100000000004389612527510836137286416018423131100000295732604556410421407244421913196117518119239152211958514100019051400000135800200015799856711914412104677751905814400001791882501562361203014552650501634441167568285231959552175316712557610849110438227790518263130591158702622861221331652071035171413239313693245517634109812103656571116662866932717312113910256127144328324121315414140637
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................1919015.009015000000000000000000009192002840259445098110811565191456131113131416512000000000000000000000001249223305153560011002523421431531522282200403201100000000715610346470039742627372894243739292940751510000004608114961540224014661352314015130710150722250200040550000092600000055342837617120016140009222580000133371952429616910542211281242816373732361623927128411286266392111873086480957535745385322592317989719814765216208816178152644392015829033657615311213191215211132121483524244379113325739
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................2317230.007230000010000000010000003500001000000011500401218415182181655000000000000000000000008479486089800294529961101152120011160555215589161810307180500000000010000000031101561200111210760004400000111500591280130018615070140054005029000000005000001511000000000141001212463481812363296001420000101111068532744021012110201049131101096308403349523914275135100040721130100018380012200003300310111286813980
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................2116341.006341000000000000000000002210066214300000061315412733271972027658464125170000000000000000000000022230000021000000000000010000000001000002000000000060000000000022539351216383032232030225257000004091100177010411711144031777370500423103416309012000000300200050442511381064215123232713210000341361928131683298820526165321341125213019219206730171881493181592136827642831845938811001883331627133929722162223277254431111023191174282180729151011919426544731200
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1815223.00522300000000000000000000518000000000000002020300011309430530000000000000000000000015061468124254900000000100000000410020003110000001000000000000000000000000003350013444100000000000004020010021120401000020029050000010000000047000000000150210075000100000000030000000000000000000000000041004201046001802013000000000000000000000070010000000000000000000010013
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2214862.004862000000000000020000000120000020000000100000000202010110000010000000000000000059861244854801000222100100000000280653314434001030280101020201020140000202041003002834321040000006686004132032006143356339112130010002370000000000000000110000000000000401011176001974450247500000020010000000003000100000013270010061216010240200014000111112120010714801000000000000000000000012
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................2014573.0045730000000000000000000031601778101000001613620421812553913115400030126000000000000000001710816000001760010033650003100168225000000000000000010100000000000151520802128961316231938000005011400102190723140133503624125161433031932300402300000060010003244289251220233000105510000217111669371691243112292116113241131533261641247924171283531805733105037753620010749296163118332612143863732164902876885535106478124324311115717112719213213842611435
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................2013559.0035590000110000000000010000000010086157215226631201035103111610000000000000000000000000731016265202012210010003230002319111724230120020230110100082380000000000104300410524211002000002221412918131125042101352497175811701722019004860000000000900000200000000002010002100035000310000411004134113413695220003023411326723111756735512134262862304911184000114131003308340425000011000006011002117116179
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................2312958.002958000000012000010000000000002020000000000000000100000000000000000000000000000032737023734611213861000000001100011013987419761000350291000201031360000231090100000410001020000005700110141111040002366237239010750280082000000000060000000000000000000051233840012914600920000000000000000000000000000000000110023000112000000000000000010000000100000000000000000000100000245
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................2212917.0029170000303661010400000001000000000000000101020000001200000000000000000000000000545567363639848108134711132215103451033440213988489202171324030000000000100000000010041000020100000000005010002617090019605025033100000410100000000100000010000000001000002301082003100000100200011000000000000000010000001412030100203000001000100000000011100000000000000000000000023
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2212858.00285800000000000001000000517000300000000663192311307205744400000000000000000000000336367225380000050200001001100001100261642520210101100000000001013000001005015400217216751210000000001838112050012170170306100000471200000000000000450000001006210003655300258600760000011221464120200020112145000372627754351037462835241101021200001011193201116352236300020000020001020114601099
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2112468.0024680000002030010200000000000010000000000001000001010001000000100000000000000000208220148234118251612101100010101400320100155702848641801608240000000000000000000000000000001000000000000000002120000023010000000000400000000000000000100000000000000164000880050000000001000000000000000000000001000000010105120000000000000010000000810000000000000000000000100801
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................2312223.00222300000000000000000000013101410000000010001411031113712320004210000000000000000013230400010100210010010006030700000001000001000000050000000000005401131271235993170000010020062606101061430135241107022311020003000000001100000020843101021153211315551800000524415119403443483117163512780412445132514216447493175532263710538281441246313227185311347273516524343119111411314411250763523571291337131013460
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAG.......................................................................................................2311694.0016940000100100010000000000000000000000000000002000001020000000000000000000000000321392231369010031131001100210000910171537402310100700000000000000000000000020000120100002000000000000310200580103020000001600000000010000000000000000000001038000820010000000000000000000200000000000001000010000212111010000100010020000000001000000000000000000000000125
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................1911439.0014390000000000000000000012200241100000002001002320122652100002100000000000000000088111100000001300000011000000331300000000000000000000100022000000105021350042352000002003304790222027002400013011901111100300000000010000005678103410420001213000005342618462011669315130081086811926111369573700210473663941161217354311964302620252143157218396133600170132411711131328351318470
..............................................................................................................................................................................AATCACAGGATTATACTGTGATG......................................................................................................2311275.00127500000000000000000000000000000000000000000000000000000000000000000000000000003383532293540000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2211141.001141000000000000000000000000010000000000000109000000013220000000000000000000000001000000000000010000000000000000000000000000000000000000000000112903467866731215000001082004103350010017020100000000200001000000010000000001012000000010000000000211223105110021430117320032429352161715210370176112384745300025274723400604012110000112110022001213086120
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2211049.00104900000001000000000000000000100000000000000000000000000000000000000000000000002302661803080110110000020000000000122641000000100000000001000000000000001000010000000000000000000100300110000010000002000000000000000001000000000000000300001100000000010010001000000110000000010011000030000000010000010000000100000002000000000000000000000000006
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................2311022.00102200000000000001000000000000000000000002011412020105322000000000000000000000002211030001110000000000000000010100000000000000000202000010001000446150222015266000002000004601320030121350000101010000000000000037000000170011061811532260301010000003652101205272100503103110920213533336945826111811191396121672009321365944001151438851153410019115104013321114583415
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................181901.0090100000000000000110000010000002002000011030102010120001000201000000000000000001813111400000110001000000000100012001000001000000000003000014000001122003531350000000004209000120010020022310060136006422002000000000000000019211727850010000000000000125011000000020230027362770341435186100101242391116281149192412613241278221551163541211040060101342431024142234
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................181893.0089300000000000000000000030005010140300001003210010122003000000000000000000000000000000000000000000000000000000000000000000000000001000000000000281040118613109300100000000500110241051500020400013071810150030200000003002000481823241315000110014000000000500010000012002001100001057171823321010717510441654593015324512051022011063303002400100010110122250
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................181888.008880000000000000000010038000000155112224000311000102012001200000000000000000000000352515035323001000100010191713231523002018040000000001000117220000102444001104434000000010000000718061002261118142490402051000000000000000030000002001303200100000107110000201422010022031156151230013136151910133125231262973301462114712811200226002000073000000000000000000000012134
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................221775.00775000000010000020000000010001000000000120100000100020000000000000000000000000084105671950323523050102000100000110141820111100000700000000002001001100000010000113030000200000234213321010030020102002000000000000001000002100000000000000002000040020000006000000010000001000100000011000000111100020000000100010130100005512000000000000001000000000023
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................221639.006390000100000001000000000000000000000010010024100110503100000000000000000000000414670000011100020010100000181171625000026030000000010100000000000100300130313210210000067030015160130033160120170150000009401000000000000001400000000030000181000010700032000000200020110001000100010000153201121204270302407010001001031110000071000000000000000000100010015
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................211598.005980000000000000000000000000000000000000000085000006410000000000000000000000000212412311010311000000060100011159301000000101010000000035416350000000000200010110001002000000010100663601800200301801100100031000000000000000000000000000000000000000100100000000060311100011010001000010010000220303020020100002000002100010018000000000000000000000000004
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................201559.00559000000000000000000000000021340000000120000000002112210000000000000000000000000000000000000000000000000000000000100500000000000000000000000001301050111100300000404104000112303210523001440010031120000000000003000000124512000001000110000000000000000000010110020111100222021031200040511502125139400111200301002552102410003000301112100232350
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................221519.0051900000000100020000000001001000000000101020221101103413000000000000000000000002001020000100001000010100004100000001000000000000000000000000000061106511121310000000000022028240671012100010000100300100000000020000003011421001000040000000011111131202121032003212751012805310500130013107867111000121162121101403144142022140021063120025210100
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................211494.0049400000000000012000000000000100000000200000011001060100000000000000000000000001921947110012010100600200000115358390000000208010000001407500000000001210000003000000000000002081470230011002030600110052000000000000000000000000000000000000000200000000000030101301020000000000002030200101220000200200000000010000000012000100000000000000010002111
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................211440.00440000011010002010000000000000000000000000010100000200000000000000000000000000013791521000112000100110000151525130300000105000000003023000000000001000001000000000000000000653301400760702804000010074000000000000000010000000000100000000000900600000000040300000001010000100001010100121101000210100003000200001000001000000100000000000000000101
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................191410.004100000000000000000000001000701200000000000010000011120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111700413200200000001001002101510070200000200101600300000000000000000007104001010530001000000000000000000001100000030110004171120360103081272022102210000141002001901112601001200000100010042000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................201394.0039400002100000111000000000000000000000000000000000000000000000000000000000000001016615224035720000021110021534239134330260020100000000000000000000000100000000000000000000006010026000041117010220000013000000000000000000000000000000001103000111000000000000000000000000000000000000000000000010000000000010000001000000010000000000000000000000000035
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................211341.003410000000000000000000000000000000000000001000000000000000000000000000000000000116000000000000000000000400106381202000030000010101000000000000000000000000010200000010000703100001301000020020011000000000000000000000000000100000100000970110700000000010000000000100000000000010000000000000110000000000000000000014100000000000000000000000001
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................201335.00335000000000000000000000000000000000000000000000000000000000000000000000000000011774060203120010032110018205820761613001069000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000079
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................231310.003100000001000000000000000000000000000000000000000000010000000000000000000000000296134321700021000000000000002037172120000000700000000100000000000000000000000000000000000000032010012000100000100400000000000000001000000000000000061900010110013000000000000000000000000000000000100000201000200100000010000000000000100000000000000000000000000015
......................................................................................................................................CGCAGTATATTTTTGTGTTTG................................................................................................................................................211290.00290000000100000000000000000000000000000000000100000000000000000000000000000000000010000001000000001000000001101000000000000000000000000000000001101132301006100000107100240224806334113000100000120000000000000002000000414210000210003000000000000001100000010000000000000010100000010000222317711000111011002002701004000203213035200303226150
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................191254.002540000000000000000000036000000000000200000010000010100000000000000000000000000241050500102100000000021108201837810100000410000000000000000000010000000000001000000000000010042050002000004000000150100000000000000010000003000000000000000000000020000000000000000000000000010000004140200010100000000000000000000001000000000000000000000000006
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................201175.001750000000000000000000000000200000000100200010111001120100000000000000000000000101000000000000000000000000000000000000000000000000000000000000000040301020071000000001000120000025103300000000000100000000000000000000020120000201001001000000000040100000000000000020200260010070104210011050103010011313000100122500010210000100000000020040
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................191170.0017000000000000000000000000000000000000000000000000000000000000000000000000000008219200000010000100020000000021110000100100000000001000000000000000000000012000000000000015214070001301301050010003000000000000000001000000000000000510001000000000000000000000000000000000001000000141303001200001110000010200010000000000100000000000000000000
........................................................................................................TAATAAC---AC------GTCTCGACGCCT.....................................................................................................................................................................211160.001600000000000000000000000100000000000000110001000011001100000000000000000000000000001000010000000000000000000000000000000000000000200000001000000002001000001000000000000000000000000000000000000000100000000000000000204011126131943131001000001100011100001040002101002110103120000000000401000000000081410100010200100202000101000000200230
.......................................................................................................................................GCAGTATATTTTTGTGTTTTT...............................................................................................................................................211157.0015700000000000000000000001008000000000311124201044000107000000000000000000000000100000000000000000000000000000000000000000000000000000000000001030018248000100000010000000000000000000000000000002000000000000200000000000000000000000000000001302121030020243012373013011502400000000001000001300000010000000110000000000000000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGAA.....................................................................................................241157.0015700000000000001000000000000000000000000000000000000000000000000000000000000002927203100000000000000000000000603000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTT................................................................................................................................................221146.00146000001000000000000000001000000000002000000000100011200000000000000000000000011020000000000000100000300000001100001000000000000010000000000000000051000101100000000000100030022100100000000010000000000000000000000001160001140003000000000000000100000000010001100000343212016001141150000210010000002303000001200000010200000000000011020
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGG......................................................................................................231138.0013800000000000000000000000000000000000000000000000000000000000000000000000000002020526000000000000000000000001010000000000000000000000000000000500000000000000000000000000022020010000103000000500000000000000000000000000000000042000131100300000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000008
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................241136.0013600000000000000000000001000000000000010000000100010100000611000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010010000000600001020000000000000010000000000000000000000000030110001012100100000000003000300000000000001009002047010000000300301142021100000001131200221003211030501110000000010010
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................231114.0011400000000000000000000000000100000000010000130110221211000000000000000000000000000000001000000000000000000000000000000000000000001000000000000010002020300100000000000000000001010000000000000000000000000000000000000202001011100100000000000001001101000000000020010301122011014011241120010000100004100000031011200000101000000000000050
.........................................................................................................AATAAC---AC------GTCTCGACGCCT.....................................................................................................................................................................201100.00100000000000000000000000000000000000000000000100000000010000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000130000000000000000000000000000001000000000000000000000000000000000000100011324195140001000010200000000001011000002100003211000000000000001000000000011001000000102010300001000000000000120
..................................................................................................................................................................................ACAGGATTATACTGTGA........................................................................................................17199.0099000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000480000000000000000000000000000000000000000000000030100027401015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................19185.00850000000000000000000000000010000000000000000000000000000000000000000000000000404202001140000000011000110151870200102000000000000000000000000000000000000000000000000000100000330400000000008000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
................................................................................................................................................................................TCACAGGATTATACTGTGAGT......................................................................................................21184.008400000000000000000000000000100000000000000000010000100000000000000000000000006440000000000000000000000008413000000010000000000000000000000000001000000000000000003000000000000001000000000000000000000000000000000000400000000000006001400000000000000000000000000000000010011010000000030000000000001000000001000000200000000000000000010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................23182.00820000000000000000000000100000000000000000000000000010100000000000000000000000000100000110000100000000100001000000000000000000000000000000000000000101000031000000001001000110000002000000000000000000000000000000000000000000010030010000000000201000002021001101201000120100001000000022302000000043000000160000000100001000000000011010
droEre2
CCCTTCCTCC---CCACCAAA--GTG---CTTT----------------------------------GCCCGCCG---TCCGGATGATA---TG------GGGGGAATCAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCGT-TTTGCAAATCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCCGCCAGCAGCAG---------AA----AGTGACTGAC--------C---------------------A-GATTTG-----TAT--TATATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2218615.0086159407586156185450639
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2111217.0012176906246484030130
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191506.005061351521261501590
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................211399.003998741715672090
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................211143.001439103024250
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................221120.001204053490140
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................221115.001158210141413
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................241105.0010540013691
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20183.0083540402221
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................20167.00671213214350
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................23154.005420208537
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................23142.004230012531
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................20135.003535000000
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19127.002720239110
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................19122.00229011650
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................23121.00212020278
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................18119.001952000120
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTT............................................................................................................................................25114.001400000113
............................................................................................................................................................................CAAATCACAGGATTATACTGTGA........................................................................................................23113.00137301020
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................20112.00125000250
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................18111.00110000290
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................23111.001110000010
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................22111.001110000010
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................20110.00108010010
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1919.0097000020
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2118.0088000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................2218.0083000230
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2217.0073001030
......................................................................................................................................CGCAGTATATTTTTGTGTTG.................................................................................................................................................2017.0070000250
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2117.0070000160
......................................................................................................................................CGCAGTATATTTTTGTGTTTTTG..............................................................................................................................................2316.0060000150
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2216.0065000010
......................................................................................................................................CGCAGTATATTTTTGTGTTTG................................................................................................................................................2116.0061000320
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................1916.0060510000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................1916.0065000010
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2316.0061010040
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1815.0051000220
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2214.0043100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2214.0044000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2214.0042002000
............................................................................................................................................................................CAAATCACAGGATTATACTGTG.........................................................................................................2214.0044000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGG..............................................................................................................................................2313.0032000010
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................1913.0033000000
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................2113.0033000000
.........................................................................................................AATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2013.0030100110
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................1813.0033000000
..............................................................................................................................................................................AATCACAGGATTATACTGTT.........................................................................................................2013.0031000020
........................................................................................................................................CAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2213.0032000100
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................2313.0030000003
...................................................................................................................................................................................CAGGATTATACTGTGAG.......................................................................................................1712.0020000002
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1812.0021000010
.......................................................................................................................................GCAGTATATTTTTGTGTTT.................................................................................................................................................1912.0021000010
........................................................................................................GAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2112.0021100000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTT...............................................................................................................................................2112.0020001010
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2112.0021000010
......................................................................................................GGGAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2311.0011000000
..............................................................................................................................................................................AATCACAGGATTATACTTGA.........................................................................................................20101.00108000020
.......................................................................................................................................GCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2211.0011000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2211.0011000000
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................2011.0011000000
....................................................................................................................................................................................................ATGACCAGCGTGCCGCCAGCAGC................................................................................2311.0010000010
..........................................................................................................ATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................1911.0010000100
.............................................................................................................................................................................AAATCACAGGATTATACTGTG.........................................................................................................2111.0011000000
.............................................................................................................................................................................AAATCACAGGATTATACTGT..........................................................................................................2011.0010100000
............................................................................................................................................................................CAAATCACAGGATTATACTGT..........................................................................................................2111.0010000100
................................................................................................................................................................................TCACAGGATTATACTGTGAGT......................................................................................................2111.0011000000
..........................................................................................................................................GTATATTTTTGTGTTTTGT..............................................................................................................................................1911.0010000100
...........................................................................................................................................................................TCAAATCACAGGATTATACTG...........................................................................................................2111.0010010000
..............................................................................................................................................................................AATCACAGGATTATACTT...........................................................................................................1811.0010000010
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................2011.0010000100
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................1911.0010000010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTTC...........................................................................................................................................2611.0010001000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAA.......................................................................................................2111.0011000000
..............................................................................................................................................................................AATCACAGGATTATACTGTTG........................................................................................................2111.0011000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2311.0011000000
.........................................................................................................................................AGTATATTTTTGTGTTTT................................................................................................................................................1811.0010000010
...............................................................................................................................................................................ATCACAGGATTATACTGTGTT.......................................................................................................2111.0011000000
droYak3
CCCTC--TTTTCACTATGGAA--GTG---CTTT----------------------------------GCCCGCCA---TCCGGATGAGA---TG------GGGGGAATCAC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTTCCT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACCAGCGTGCC---AGCAGCAG---------AA----AGTGACTGAC--------A---------------------A-GATCTG-----TAT--TATAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2112843.00284381699921952547600042
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2211564.00156434348475151111953140000
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191398.003981517536102950470000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................221158.00158010323801000023
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................201111.001111107200100000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................20191.0091091000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................21187.00870292337970000
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................18179.00796301111201000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22160.006001113331200000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................21148.0048036053220000
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................19146.00462801411200000
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................19114.0014140000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................23111.001105420000000
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19111.001104150010000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2218.00805300000000
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................1916.00606000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2216.00606000000000
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1916.00605000010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2116.00621300000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................2316.00602201010000
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................1916.00606000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2215.00504100000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................2215.00504100000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2115.00505000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................2315.00501121000000
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................2014.00401210000000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................1914.00404000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2214.00401300000000
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................2013.00301002000000
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1813.00301101000000
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................1813.00303000000000
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1912.00201100000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2012.00202000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................2012.00220000000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2312.00202000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................2212.00201010000000
............................................................................................................................................................TTTCCT-TTTGCAACTCAAA...........................................................................................................................1912.00201100000000
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................2012.00202000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................2312.00200200000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................2312.00202000000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTT................................................................................................................................................2212.00201010000000
..............................................................................................................................................................................AATCACAGGATTATACTGTTT........................................................................................................2111.00100000100000
..............................................................................................................................................................................................................TGCC---AGCAGCAG---------AA----AGTGACT........................................................2111.00110000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGAA.............................................................................................................................................2411.00100010000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGATT......................................................................................................2311.00101000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTTCCT-........................................................................................................................................2811.00101000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGG......................................................................................................2211.00101000000000
.....................................................................................................................................................................TGCAACTCAAATCACAGGATTATACTG...........................................................................................................2711.00101000000000
.............................................................................................................................................................................AAATCACAGGATTATACTG...........................................................................................................1911.00101000000000
....................................................................................................................................................................TTGCAACTCAAATCACAGGATTATAC.............................................................................................................2611.00101000000000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1811.00101000000000
.......................................................................................................GGAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAT.......................................................................................................2111.00101000000000
.................................................................................................................................................................................CACAGGATTATACTGTGA........................................................................................................1811.00101000000000
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1811.00101000000000
........................................................................................A---TG------GGGGGAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2811.00100100000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTC...............................................................................................................................................2111.00100000010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2111.00100001000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAA.......................................................................................................2111.00101000000000
.......................................................................................................................................GCAGTATATTTTTGTGTT..................................................................................................................................................1811.00101000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2211.00101000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGAT.....................................................................................................2411.00100100000000
....................................................................................................GGGGGAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2511.00100100000000
........................................................................................................GAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2111.00101000000000
.............................................................................................G------GGGGGAATCAC---AC------GTCTCGACGCCT.....................................................................................................................................................................2611.00100100000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTAA..............................................................................................................................................2311.00100010000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2311.00100100000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2211.00101000000000
..............................................................................................................................................................................AATCACAGGATTATACTTGA.........................................................................................................2060.50300300000000
............................................................................................................................................................TTTCCT-TTTGCAACTCAAG...........................................................................................................................1920.50100100000000
droEug1
CTCCA--------ACCCAGAA--GTG--------------------------------------------------------------------------------ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TTTGTAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAGCGA---------AT----AATGAATAAA--------A---------------------A-G-TGTA-----AAT--TATTCSizeHit CountTotal NormTotal
No Reads
droBia1
CTGGC---------CTCAGAGTTGTG---TTAT----------------------------------GCCCCCCA---TCCAGA---------G------AAGAG-AACCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTAG-GC-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGCC---AGCAGCAG---------AA----AGGGATTGAA--------G---------------------C-G-TATT-----TAT--TA-ATSizeHit CountTotal NormTotal
No Reads
droTak1
CCTAA--------CTGCAGAA--GTG---CTTC-----------------------------------------------------------CGAAGTCAT--CG-ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-GT-TCTGAAACTCAAATCACAGGATTATACTGTGAGCTGACCAGCGTGCC---AGCAGCAA---------GA----AGTTTATAGG--------A---------------------TGGATTTG-----AAT--TATATSizeHit CountTotal NormTotal
No Reads
droEle1
TCCTC---------CGCAAAA--GTG---TTTGCC---------------------------------------A---TC-----------CCG------GAGAG-ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAGCCA---------AG----AGTGAATGGA--------A---------------------CTGGTTTG-----AG---CA-ACSizeHit CountTotal NormTotal
No Reads
droRho1
CTTTA-----------TAGAA--GTG---TGTTCC---------------------------------------G---TT-----------CTG------GAGAG-ATCCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTC-GT-TTTGCAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAGCGA---------AG----AGTTTATGAA--------A---------------------TTGGTTCT------AG--TA-ATSizeHit CountTotal NormTotal
No Reads
droFic1
TCCCA------------AGAA--GTG---TTATCC-------------------------------------ACA---TC-----------CCG------AAGAG-AACCC---AC------GTCTCGACGACTCGCAGTATATTTTTGTGTTTTGTTG-GT-TTTGGAACTCAAATCACAGGATTATACTGTGAGCTGACAAGCGTGCC---AGCAACCA---------AA----GAAATCTAAA--------A---------------------CGGTTTGG-----AAT--TAAATSizeHit CountTotal NormTotal
No Reads
droKik1
CCCCC--------CC-GCAAA--GTG---CTTCCT---------------------------------------C---TCC------------G------A--AG-AACCC---AC------GTCTCGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TGTTTGAAAACTCAAATCACAGGATTATACTGTGAGATGACAAGCGTGCC---AGCAACAG---------CA----GCAGCATAAT--------T---------------------A-GCCTTT-----AAT--TATAGSizeHit CountTotal NormTotal
No Reads
droAna3
CTCTA--------CC--------------------------------------------------------------------------------------------ATCC---AT------GTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GG-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTC---AGCAGCTG---------AA----ACAGTGCATAATTAAAGAATCCTATTTGCCC---------A-ACTATG-----CTA--GATATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2218324.008324232457492524294619
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2111480.00148010191278568325
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191280.002803643146819100
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................211134.0013451810171569
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................221110.001102021321243
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................21159.0059190111325
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................20158.005833071530
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20138.003810024121
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................22135.003510255013
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19125.00251005811
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................18118.00182120202
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................23116.0016220093
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................19114.00140140000
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................19110.0010311005
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................22110.0010370000
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................18110.0010000127
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................2319.009120105
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................2017.007100015
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................2317.007011104
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1817.007200140
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2115.005031001
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2115.005000203
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................2215.005000122
......................................................................................................................................CGCAGTATATTTTTGTGTTTG................................................................................................................................................2115.005000014
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................1815.005500000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2315.005041000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................2015.005410000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2214.004020101
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2014.004200002
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1914.004000121
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2313.003010101
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2213.003010101
......................................................................................................................................CGCAGTATATTTTTGTGTTG.................................................................................................................................................2013.003000012
....A--------CC--------------------------------------------------------------------------------------------ATCC---AT------GTCTCGTCGCCT.....................................................................................................................................................................2113.003020001
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1812.002000002
...........................................................................................................................................................................TCAAATCACAGGATTATACTGT..........................................................................................................2212.002000011
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2212.002001010
......................................................................................................................................CGCAGTATATTTTTGTGTTC.................................................................................................................................................2012.002020000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................2212.002101000
..............................................................................................................................................................................AATCACAGGATTATACTGTT.........................................................................................................2012.002100001
..............C--------------------------------------------------------------------------------------------ATCC---AT------GTCTCGTCGCCT.....................................................................................................................................................................1911.001100000
.........................................................................................................................................AGTATATTTTTGTGTTTTGTT.............................................................................................................................................2111.001100000
...........................................................................................................................................................................TCAAATCACAGGATTATACTGG..........................................................................................................2211.001000100
..CTA--------CC--------------------------------------------------------------------------------------------ATCC---AT------GTCTCGTCGCCT.....................................................................................................................................................................2311.001100000
..............................................................................................................................................................................AATCACAGGATTATACTGGA.........................................................................................................2011.001000001
......................................................................................................................................CGCAGTATATTTTTGTGTTTAT...............................................................................................................................................2211.001000001
.............................................................................................................................................................................AAATCACAGGATTATACTGTG.........................................................................................................2111.001100000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTC...............................................................................................................................................2111.001000001
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTT................................................................................................................................................2211.001000001
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................2111.001000001
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTT-G..........................................................................................................................................2611.001001000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAT.......................................................................................................2311.001010000
.........................................................................................................................................AGTATATTTTTGTGTTTT................................................................................................................................................1811.001010000
...............................................................................................................................................................................ATCACAGGATTATACTGA..........................................................................................................1811.001100000
...................................................................................................................................................................................CAGGATTATACTGTGAGT......................................................................................................1811.001100000
..............................................................................................................................................................................AATCACAGGATTATACT............................................................................................................1711.001000100
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2411.001000010
....................................................................................................................................................................TTGAAACTCAAATCACAGGATT.................................................................................................................2211.001010000
....................................................................................................................................................................TTGAAACTCAAATCACAGGATTATACT............................................................................................................2711.001010000
droBip1
ACTAA--------AC---AAG--GTG---ATATCACTCCT--------------------------------AC---------------------------------ATCC---AT------GTCTCGTCGCCTCGCAGTATATTTTTGTGTTTTGTTT-GT-TTTGAAACTCAAATCACAGGATTATACTGTGAGATGCCAAGCGTGTC---AGCAGCCG---------AATATCAGCAATTCA-------ATAT----------------CTAAT-ATATCT-----AAT--TATACSizeHit CountTotal NormTotal
No Reads
dp5
CTCCA--------------AA--GTG---TTTTCC----------------------------------TAGGTG---TG-----------CCG-------AAAG-AAGCG---GC------GTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCT---ATCAAGAG---------AG----TGTGAACG----------------------------------GAACCC-----AAG--TGTATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2112481.00248112034113192655913400
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2212302.002302359333546047266531319
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191391.00391927417138448000
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................201264.002640248040111000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................221162.001620102114504540
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................201110.00110011000000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................21189.008901831202420012
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................21166.006605200635000
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................20146.0046018104518000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22135.0035010022120000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................22130.003002063100000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................23128.002801520224030
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19124.00240900726000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................23124.002403101201430
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18122.002202200000000
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................19119.001901900000000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................19118.001801800000000
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................18118.00188143110000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................21114.001401400000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................23112.00120110611200
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................22110.001001000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................2319.0090100000710
.............................................................................................................................................................................AAATCACAGGATTATACTGTG.........................................................................................................2118.0080800000000
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................1918.0081052000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2218.0080800000000
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................2017.0070400102000
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1917.0070700000000
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1816.0060600000000
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................2016.0060600000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2015.0050400010000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2214.0040211000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2114.0040211000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTG-...........................................................................................................................................2514.0040100110010
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................2114.0040400000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2113.0030200010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2213.0030300000000
.............................................................................................................................................................................AAATCACAGGATTATACTGT..........................................................................................................2013.0030200100000
.............................................................................................................................................................................AAATCACAGGATTATACTG...........................................................................................................1912.0021000010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGTT.......................................................................................................2212.0020200000000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2312.0020100010000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2412.0020000002000
.......................................................................................................................................GCAGTATATTTTTGTGTTT.................................................................................................................................................1912.0020200000000
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................1912.0020200000000
.......................................................................................................................................GCAGTATATTTTTGTGTT..................................................................................................................................................1812.0020100010000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAA.......................................................................................................2111.0010100000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2211.0010000010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGAA.....................................................................................................2411.0010000000100
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................2111.0010100000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................2211.0010000010000
................................................................................................................................................................................TCACAGGATTATACTGTGAGT......................................................................................................2111.0010100000000
....A--------------AA--GTG---TTTTCC----------------------------------TAGGTG---TG-----------................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1811.0010010000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2211.0010100000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGATT......................................................................................................2311.0010100000000
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1911.0010100000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTGTTG-...........................................................................................................................................2411.0010100000000
................................................................................................................................................................................TCACAGGATTATACTGTG.........................................................................................................1811.0010100000000
..............................................................................................................................................................................AATCACAGGATTATACTGTT.........................................................................................................2011.0010000001000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGC......................................................................................................2211.0010100000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGACC......................................................................................................2311.0010100000000
.......................................................................................................................................................................AAACGCAAATCACAGGATTATACTGTGA........................................................................................................2811.0010100000000
......................................................................................................AAG-AAGCG---GC------GTCTTGACGCCT.....................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1811.0010100000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAG.......................................................................................................2311.0010100000000
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................2011.0010100000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTGT..............................................................................................................................................2211.0010100000000
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................1811.0010000010000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAGT......................................................................................................2411.0010100000000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTT...............................................................................................................................................2111.0010100000000
.................................................................................................................................................................................CACAGGATTATACTGTGA........................................................................................................1811.0010100000000
......................................................................................................................................CGCAGTATATTTTTGT.....................................................................................................................................................1611.0010000000010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2311.0010010000000
....................................................................................................................................................................................................ATGCTGGGCGTGCT---ATCAAGAG---------A....................................................................2311.0010000100000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGG........................................................................................................2211.0010100000000
..........................................................................................................................................GTATATTTTTGTGTTTTGT..............................................................................................................................................1911.0010100000000
......................................................................................................................................CGCAGTATATTTTTGTGTTTA................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................ATCACAGGATTATACTGTA.........................................................................................................1911.0010100000000
.................................................................................................................................................................................CACAGGATTATACTGTGAGA......................................................................................................2011.0010100000000
......................................................................................................................................CGCAGTATATTTTTGTGTAA.................................................................................................................................................2020.5010000100000
............................................................................................................................................................TTG-TG-TCTGAAACGCAAAG..........................................................................................................................1920.5010100000000
....................................................................................................................................................................................AGGATTATACTGTGAGAA.....................................................................................................1830.3310100000000
............................................................................................................................................................TTG-TG-TCTGAAACGCAAAAA.........................................................................................................................2060.1710100000000
droPer2
CTCCA--------------AT--GTG---TTTTCC----------------------------------TAGGTG---TG-----------CCG-------AAAG-AATCG---GC------GTCTTGACGCCTCGCAGTATATTTTTGTGTTTTGTTG-TG-TCTGAAACGCAAATCACAGGATTATACTGTGAGATGCTGGGCGTGCT---ATCAGAGA------------------GTGTGAA--------A---------------------G-GAACCC-----AAG--TGTATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................1911558.001558126846100341064
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2211235.00123540150195263148439
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................211410.00410818735561204
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................181236.0023622500470
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................191176.0017617501000
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................191117.0011711600100
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................21149.00490947722
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................20130.00300447213
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................22129.00290192350
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20127.00270160830
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19125.00250213019
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22125.00250112381
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................21118.0018073116
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18111.0011830000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................20110.00100100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................2317.007012121
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................2316.006021003
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................1913.003030000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................2213.003030000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2113.003030000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2213.003030000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................2312.002010010
...................................................................................................................................................................................CAGGATTATACTGTGAGT......................................................................................................1812.002110000
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................1812.002002000
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2112.002200000
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2112.002000110
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2212.002000011
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................2312.002020000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1812.002110000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2211.001010000
...............................................................................................................................................................................ATCACAGGATTATACTGC..........................................................................................................1811.001100000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2211.001010000
..............................................................................................................................................................................AATCACAGGATTATACTAC..........................................................................................................1911.001100000
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2011.001010000
......................................................................................................................................CGCAGTATATTTTTGTGTTTA................................................................................................................................................2111.001010000
..............................................................................................................................................................................AATCACAGGATTATACTGGA.........................................................................................................2011.001010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2211.001000010
................................................................................................................................................................................TCACAGGATTATACTGTGAGT......................................................................................................2111.001000100
........................................................................................................................................................................AACGCAAATCACAGGATTATAC.............................................................................................................2211.001010000
..................................................................................................................................................................................ACAGGATTATACTGTGAGT......................................................................................................1911.001010000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAGA......................................................................................................2411.001010000
....................................................................................................................................................................................................ATGCTGGGCGTGCT---ATCAGAGA------------------GTGTGA......................................................2811.001000001
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................2011.001010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................2111.001000010
.................................................................................................................................................................................CACAGGATTATACTGTGA........................................................................................................1811.001010000
...........................................................................................................................................................GTTG-TG-TCTGAAACGCAAA...........................................................................................................................1911.001000001
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1911.001001000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTG-...........................................................................................................................................2511.001000100
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGG..............................................................................................................................................2311.001010000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................1911.001010000
.............................................................................................................................................................................AAATCACAGGATTATACTGTG.........................................................................................................2111.001010000
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1811.001000001
...............................................................................................................................................................................ATCACAGGATTATACTGG..........................................................................................................1811.001100000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2211.001010000
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................2111.001010000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTTA..............................................................................................................................................2311.001001000
......................................................................................................................................CGCAGTATATTTTTGTGC...................................................................................................................................................1820.501100000
..............................................................................................................................................................................AATCACAGGATTATACTGCCT........................................................................................................2120.501000010
droWil2
CAACA-----------CCAAC--ATG---CTGG------------------------AT--------A------CTGATTAAGGCTC----------TCGT--CG-AC--C---ACAGACTATTCTTG-CGTCTCGCAGTATATTTTTGTGTTTTGTTC-AATTTGTCAACTCAAATCACAGGATTATACTGTGAGCTGCGAAATGGAA----ATCCACGC---------AA----CC-ATTTTA-------AAAT----------------CAAAT-----TG-----ACTTAAATGTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2215015.00501546158623999750
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................211981.00981495224264142
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191782.007823171774817862
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................181202.0020218060142
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................211201.0020108015142
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................221162.0016201230345
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20166.00663440415
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................21145.00450160227
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................19136.0036360000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................20131.0031031000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................23128.0028000280
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................19219.0038380000
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................19119.0019000154
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18116.0016016000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................23114.001424071
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................21112.0012101001
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................21111.0011011000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................23111.001101091
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22111.0011000101
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................20110.001000091
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1819.00906021
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2218.00802033
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................1917.00704012
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................2217.00706010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................2217.00700061
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2216.00603030
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1915.00503020
......................................................................................................................................CGCAGTATATTTTTGTGTTTTTG..............................................................................................................................................2315.00501031
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1815.00502030
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1814.00404000
..............................................................................................................C---ACAGACTATTCTTG-CGTCT.....................................................................................................................................................................2014.00400040
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................1814.00400040
..............................................................................................................................................................................AATCACAGGATTATACTGTGAAA......................................................................................................2314.00402020
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2014.00401012
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................2014.00401021
...................................................................................................................................................................................CAGGATTATACTGTGAGT......................................................................................................1814.00413000
......................................................................................................................................CGCAGTATATTTTTGTGTTTG................................................................................................................................................2114.00400031
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2213.00303000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2413.00300030
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2213.00303000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2213.00300021
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................2312.00202000
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1912.00201010
..........................................................................................................AC--C---ACAGACTATTCTTG-CGTCT.....................................................................................................................................................................2212.00200020
......................................................................................................................................CGCAGTATATTTTTGTGTTG.................................................................................................................................................2012.00200020
....................................................................................................T--CG-AC--C---ACAGACTATTCTTG-CGT.......................................................................................................................................................................2312.00200002
.................................................................................................................................................................................CACAGGATTATACTGTGAGA......................................................................................................2011.00101000
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................2011.00101000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTAA..............................................................................................................................................2311.00100010
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2211.00101000
....................................................................................................................................................................TGTCAACTCAAATCACAGGATT.................................................................................................................2211.00101000
.............................................................................................................................................................................AAATCACAGGATTATACTGTG.........................................................................................................2111.00101000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGAA.............................................................................................................................................2411.00100010
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................2111.00100010
.............................................................................................................................................................................AAATCACAGGATTATACTGT..........................................................................................................2011.00101000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGAAA-...........................................................................................................................................2511.00100010
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2111.00100010
...................................................................................................................................................................................CAGGATTATACTGTGAGG......................................................................................................1811.00100010
............................................................................................................................................................TTC-AATTTGTCAACTCAAATCACAGGATT.................................................................................................................2911.00110000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTTC-AATT.......................................................................................................................................2911.00101000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................1911.00101000
....................................................................................................................................................................TGTCAACTCAAATCACAGGATTATACT............................................................................................................2711.00101000
..............................................................................................................................................................................AATCACAGGATTATACTGGA.........................................................................................................2030.67200002
..............................................................................................................................................................................AATCACAGGATTATACTGAC.........................................................................................................2020.50101000
droVir3
CTTTA--------TT---TAT--TTATTGTTATTT-------------------------------------TAA---TTT------------G------T-----AGCCA-ACGC-------ATTCGATGTCTCGCAGTATACTTTTGTGTTTTGTTT-AT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGTAGC---AACAACAA---------AA----ATCCA---------------------------------------TTTT--AGACAC--AAAGCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................................................................CGCAGTATACTTTTGTGTTTTG...............................................................................................................................................22134514.0034514446910936736211327129168428020961971197746994533343511723272658513331179446360142393187221962663242142029711010223242632201311301122251025428956544574514297524554551411040252
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2118519.00851963132521418654511340103391661101717883221634613704723613879359416726914311351287000000000000000000102999651623113097715167551210000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................2215754.0057540019703120801102088533650261914690510851252204411414213364410142371011000000000000000000003113901173155700002010000000
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................1911620.001620493261354496103139130023315314592615132332141427593131653737010000000021000441093311621223013176658964808110000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................2311157.0011570070303110400032281516613024276402093785338160114423148700000000000000000000308829221200000000300000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................231890.0089000600010000010011110001000200000000131100000000000000000000000649436900000000000000
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................181599.0059947140151000000000100011302131231614131411210151012012001105101110100121320239523944535350013
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................201498.0049806287001001000002188125120171817310265124024522400000000000000000000101201725111000020000
......................................................................................................................................CGCAGTATACTTTTGTGTTTT................................................................................................................................................211497.0049700630735041313107561155110121243158411422724213818221130000000000000000000034903130030000000010
..............................................................................................................................................................................AATCACAGGATTATACTGTGAAA......................................................................................................231365.003650028000001000000000000000511000000203171000000000000000000000000019910700000000000000
.......................................................................................................................................GCAGTATACTTTTGTGTTTTG...............................................................................................................................................211250.002500010000430200113110010000042873102100200210000000000000000000301065000171371682400000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................221220.002200012230200010006302121247910342410109072617861000100000000000000001212100006031100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................221202.0020200290000000000042322001003072100160239200000000000000000000000015387000000000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................201201.002010018900000100000000000000000010000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................AATCACAGGATTATACT............................................................................................................171175.00175000000000000000000000000000000000000000000010000000000022010002033261945000000350036
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................181174.0017400001010100000614314344119016910013042204100000000000000000000100264100410020210000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTT...............................................................................................................................................221142.00142001000053241435138133271000002000030000210000000000000000000591300000032000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................211120.001200013000000000000001000000000000000100100000000000000000000000001040000000000000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................22199.00990041600000000002110120030234100001002110000000000000000000000000121310000000100000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGA..............................................................................................................................................23194.0094005100001000012201100010326923034021213140000000000000000000030204600000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGT..............................................................................................................................................23193.009301139330000000110401001361108332341222152000001000000000000000100100020002000000
..........................................................................................................................................GTATACTTTTGTGTTTTG...............................................................................................................................................18185.0085004012121737011100000100112210000000000200000000000000000000000001000757311100000
.....................................................................................................................................TCGCAGTATACTTTTGTGTTTT................................................................................................................................................22173.007300800000000002141200012121611130810241200000000000000000000000005400000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGG......................................................................................................23168.0068005000000000000000000000000000000001000000000000000000000000000352700000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................19167.0067105500000000000000000000000000000000000000000000000000000000001000000001000000000
...........................................................................................................GCCA-ACGC-------ATTCGATGTCT.....................................................................................................................................................................19154.005400600040200000001000000271134111300101001000000000000000000003000000001001000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAAAA.....................................................................................................24153.0053005000000000000000000000000000000010000000000000000000000000000182900000000000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAG.......................................................................................................23153.0053006000000000001110000000004100004021110000000000000000000000004161000000000000000
.....................................................................................................................................TCGCAGTATACTTTTGTGTTTTG...............................................................................................................................................23149.00490021011000000000000000100133031010002011000000000000000000001103000038226100000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTC...............................................................................................................................................22144.00440022101000000012020212000000742900000001000000000000000000013000000000001000000
......................................................................................................................................CGCAGTATACTTTTGTGTTT.................................................................................................................................................20143.00430040021000000011000210000023330000121002000000000000000000001200000024300200000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGAA.....................................................................................................24137.0037001000000000000000000000000000000000000000000000000000000000000191700000000000000
......................................................................................................................................CGCAGTATACTTTTGTGT...................................................................................................................................................18136.00360010429000100000000000091100100001000041000000000000000000010000000000000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................22134.003400150000000000100000000000021000000000000000000000000000000000033900000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTT.....................................................................................................24133.003300100000000000000000000000000000000000000000000000000000000000720500000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................19228.005673909000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................................................................................CAGGATTATACTGTGAG.......................................................................................................17127.00270000000000000000000000000000000000000000000000000000000000000010057400000090001
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................23125.00250060000000000014000001201020200000000000000000000000000000000042000000000000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGT......................................................................................................19125.002500000000000000000000001001010000100101000000000000000000000000014400001000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTG................................................................................................................................................21125.00250010000000100000000000021141110100110000000000000000000000000001000002104100000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................19124.002400240000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CAGTATACTTTTGTGTTTTG...............................................................................................................................................20121.00210090000010000000000000000021000100003000000000000000000000000000300000100000000
..............................................................................................................................................................................AATCACAGGATTATACTC...........................................................................................................18220.00406800000000000000000000000000000000000000011000000011000000000000000042443500000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGAA.............................................................................................................................................24120.00200010100000000000000000000120000000162220000000000000000000000000001000000000001
.........................................................................................................................................AGTATACTTTTGTGTTTTG...............................................................................................................................................19118.00180071001100000000000000002000000000001000000000000000000000001002200000000000000
....................................................................................................................................................................................................TTATCGGCTGTAGC---AACAAC................................................................................20117.00170000000000000000000000000000000000000000000000000000000000000000010063006100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................21117.00174220000000000000000000000000000000001000000000000001000000000010100010001300000
......................................................................................................................................CGCAGTATACTTTTGTGTT..................................................................................................................................................19116.00160051000000000010010000110010010000100100000000000000000000020000000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTTT....................................................................................................25116.001600000000000000000000000000000000000000000000000000000000000000412000000000000000
.......................................................................................................................................GCAGTATACTTTTGTGTTTT................................................................................................................................................20116.00160090010000000000010000000001000101002000000000000000000000000000000000000000000
..................................................................................................................................................................................ACAGGATTATACTGTGA........................................................................................................17114.001400000000000000000000000000000000000000000000000000000000000010001201000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGAAA-...........................................................................................................................................25114.00140000000000002200000000000010000010001000000000000000000000020001001100000000011
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................19114.00140050000000000000300000004101000000000000000000000000000000000000000000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTA...............................................................................................................................................22114.00140000100000000010000000011012010000100000000000000000000000010001000001020000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................21114.00140000000000000011010100000110100000000001000000000000000000003030000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTC.....................................................................................................24114.00140000000000000010000100100000000000000001000000000000000000000142300000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGTC.............................................................................................................................................24113.00130000000000000000000000000000010200000020000000000000000000000040000011000200000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTAA..............................................................................................................................................23111.00110000000000000000000000000020010020201000000000000000000000000003000000000000000
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18111.001100110000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................19111.001100100000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTCC........................................................................................................21111.00110040000000000000000010010001100100000010000000000000000000000000000000000000001
..........................................................................................................AGCCA-ACGC-------ATTCGATGTCT.....................................................................................................................................................................20110.00100000000000000000000000001032000000000000000000000000000000000000000000103000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTA.....................................................................................................24110.00100010000000000000000000000010000000000000000000000000000000000006200000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................20110.00100110000000000000000000000001000010001100000000000000000000000000000000000400000
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................2019.0090050000000000000000000000000000000000000000000000000000000000040000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................2119.0090000000000000000010002110000000000000001000000000000000000000030000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1919.0090020001000000000000000000010000010001001000000000000000000000000001000000010000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2219.0090060000000000000000000000021000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACAGGATTATACTGTGAGA......................................................................................................1919.0090010000000000000000000001000000000000000000000000000000000000003100100000020000
...........................................................................................................................................................................TCAAATCACAGGATTATACTGT..........................................................................................................2219.0090000000000000000000100000001000000000000000000000000000000000000000020010400000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1818.0081001000000000000001000000000000000010000000000000000000000000000012100000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGC..............................................................................................................................................2317.0070030100000000000000000010000000000000000000000000000000000000002000000000000000
...............................................................................TT------------G------T-----AGCCA-ACGC-------ATTCGATGTCT.....................................................................................................................................................................2417.0070000001000000000000000000000000000000000000000100000000000000000100000202000000
...........................................................................................................................................................................TCAAATCACAGGATTATACTG...........................................................................................................2117.0070100000000000000000000000000001000000000000000000000000000000000002012000000000
.................................................................................................................................................................................CACAGGATTATACTGTGA........................................................................................................1817.0070120000000000000000000000000000000000000000000000000000000000000000003000100000
.....................................................................................................................................TCGCAGTATACTTTTGTGTTT.................................................................................................................................................2117.0070000020000000000000000000010012100000000000000000000000000000000000000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTCC..............................................................................................................................................2315.0050000000000000000000100000000011000000000000000000000000000001100000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTT.........................................................................................................2015.0050010000000000010101000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTG.........................................................................................................2115.0050050000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAAG......................................................................................................2314.0040000000000000000000000000010000000000000000000000000000000000003000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTTA....................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000003100000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTGTT.............................................................................................................................................2414.0040000000000000000000000001001001000000000000000000000000000000010000000000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAA.......................................................................................................2114.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACAGGATTATACTGTGAA.......................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000400000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTCCA...................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000040000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTCT....................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000004000000000000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAGT......................................................................................................2414.0040000000000000000000000001001000010000000000000000000000000000010000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTTAAA..................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000004000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGCA.....................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000400000000000000
..................................................................................................................................................................................ACAGGATTATACTGTGAAA......................................................................................................1923.5070000000000000001000000000000000000000000000000000000000000000004200000000000000
.....................................................................................................................................TCGCAGTATACTTTTGTGTTTTC...............................................................................................................................................2313.0030000000000000000000000000010000000000000000000000000000000000000200000000000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAA.......................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000003000000000000000
....................................................................................................................................................................................AGGATTATACTGTGAG.......................................................................................................1613.0030000000000000000000000000000000000000000000000000000000030000000000000000000000
.....................................................................................................................................TCGCAGTATACTTTTGTGTTTTT...............................................................................................................................................2313.0030000000000000000000001000001000000000010000000000000000000000000000000000000000
......................................................................................................................................CGCAGTATACTTTTGTGTTTTTG..............................................................................................................................................2313.0030000000000000000000000000000001000000000000000000000000000000000000001100000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGGA.....................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000001200000000000000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGC......................................................................................................2213.0030001000000000000000000000000000000020000000000000000000000000000000000000000000
................................................................................................................................................................................TCACAGGATTATACT............................................................................................................1513.0030000000000000000000000000000000000000000000000000000000111000000000000000000000
.......................................................................................................................................GCAGTATACTTTTGTGTTTTC...............................................................................................................................................2113.0030020000000000000000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTTAA...................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000002100000000000000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2213.0030020000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AGGATTATACTGTGAGA......................................................................................................1722.5050000000000000000000000000000000000000000000000000000000000000000000100000030001
................................................................................T------------G------T-----AGCCA-ACGC-------ATTCGATGT.......................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAGA......................................................................................................2412.0020010000000000000000000000000000000000000000000000000000000000001000000000000000
.....................................................................................................................................TCGCAGTATACTTTTGTGTTTTAA..............................................................................................................................................2412.0020000000000000000000000000000000000001000000000000000000000010000000000000000000
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
TTTAT---------TCTAAAT--TTG---TTAA----------------------------------GATTTTAA---TTTGAATTATT--------------TG-AA--C---AC------A-TTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTT-AT-TATAAAAATCAAATCACAGGATTATACTGTGAGTTATCGGCTGAAAC---AACAACAA---------AT----T--GAATTAA-------AA---------------------T-CATCTGCTAGCTAT--CATATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................2115405.005405260416381116241526
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2211392.00139225338811916753412
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................191950.00950667484942081
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................201201.0020118237090
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................221179.00179136213352
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................201127.0012712500020
......................................................................................................................................CGCAGTATATTTTTGTGTTTTT...............................................................................................................................................22151.005102123700
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................18140.00404000000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................22137.00378000290
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................21132.00322420015
..............................................................................................................................................................................AATCACAGGATTATACTGTGAA.......................................................................................................22127.00272200050
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGC......................................................................................................23126.00262400020
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................21120.0020485111
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................22118.00181210050
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................18116.00161014100
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGA......................................................................................................23113.0013700060
......................................................................................................................................CGCAGTATATTTTTGTGTTT.................................................................................................................................................20111.0011312014
..............................................................................................................................................................................AATCACAGGATTATACTGC..........................................................................................................19110.0010001180
.................................................................................................................................................................................CACAGGATTATACTGTGAG.......................................................................................................1919.009900000
................................................................................................................................................................................TCACAGGATTATACTGTGA........................................................................................................1919.009900000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGT......................................................................................................2318.008600110
......................................................................................................................................CGCAGTATATTTTTGTGTT..................................................................................................................................................1918.008100205
..............................................................................................................................................................................AATCACAGGATTATACTGTGAAA......................................................................................................2317.007700000
................................................................................................................................................................................TCACAGGATTATACTGTGAG.......................................................................................................2017.007700000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGA......................................................................................................2217.007700000
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................1917.007700000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGT..............................................................................................................................................2315.005120002
..............................................................................................................................................................................AATCACAGGATTATACTGTGT........................................................................................................2115.005101210
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1815.005500000
........................................................................................................................................CAGTATATTTTTGTGTTTTG...............................................................................................................................................2014.004300010
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2214.004400000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2114.004400000
..............................................................................................................................................................................AATCACAGGATTATACTGTGC........................................................................................................2114.004120100
..............................................................................................................................................................................AATCACAGGATTATACTGTGAC.......................................................................................................2214.004000040
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGC..............................................................................................................................................2314.004300001
..............................................................................................................................................................................AATCACAGGATTATACTGA..........................................................................................................1914.004400000
..............................................................................................................................................................................AATCACAGGATTATACTGTGG........................................................................................................2113.003100020
......................................................................................................................................CGCAGTATATTTTTGTGT...................................................................................................................................................1813.003001101
.................................................................................................................................................................................CACAGGATTATACTGTGA........................................................................................................1813.003300000
......................................................................................................................................CGCAGTATATTTTTGTGTTTC................................................................................................................................................2113.003110001
......................................................................................................................................CGCAGTATATTTTTGTGTTTCC...............................................................................................................................................2213.003000012
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGA..............................................................................................................................................2312.002100001
..............................................................................................................................................................................AATCACAGGATTATACTCC..........................................................................................................1912.002200000
..........................................................................................................................................................................ATCAAATCACAGGATTATACTGTGA........................................................................................................2512.002000020
..............................................................................................................................................................................AATCACAGGATTATACTGG..........................................................................................................1912.002001100
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGC......................................................................................................2212.002200000
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTT................................................................................................................................................2212.002101000
..................................................................................................................................................................................ACAGGATTATACTGTGAGA......................................................................................................1912.002200000
..............................................................................................................................................................................AATCACAGGATTATACTGTA.........................................................................................................2012.002100010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTC.............................................................................................................................................2412.002000002
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1812.002100001
................................................................................................................................................................................TCACAGGATTATACTGTGAGA......................................................................................................2112.002100010
............................................................................................................................................................................CAAATCACAGGATTATACTGTGA........................................................................................................2311.001000010
.......................................................................................................................................GCAGTATATTTTTGTGTTTTC...............................................................................................................................................2111.001100000
.......................................................................................................................................GCAGTATATTTTTGTGTTT.................................................................................................................................................1911.001100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGTC.....................................................................................................2411.001100000
..........................................................................................................................................................................ATCAAATCACAGGATTATACTGTGG........................................................................................................2511.001000010
....................................................................................................................................................................................AGGATTATACTGTGAGTT.....................................................................................................1811.001100000
........................................................................................T--------------TG-AA--C---AC------A-TTCGATGTCT.....................................................................................................................................................................1911.001000010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTA...............................................................................................................................................2211.001010000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTC...............................................................................................................................................2211.001100000
................................................................................................................................................................................TCACAGGATTATACTGTG.........................................................................................................1811.001100000
.......................................................................................TT--------------TG-AA--C---AC------A-TTCGATGTCT.....................................................................................................................................................................2011.001000010
..............................................................................................................................................................................AATCACAGGATTATACTAC..........................................................................................................1921.002000020
................................................................................................................................................................................TCACAGGATTATACTGTGAGT......................................................................................................2111.001100000
..............................................................................................................................................................................AATCACAGGATTATACTA...........................................................................................................1811.001100000
..............................................................................................................................................................................AATCACAGGATTATACTGTGTA.......................................................................................................2211.001001000
..............................................................................................................................................................................AATCACAGGATTATACTGTGAGCC.....................................................................................................2411.001100000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGG..............................................................................................................................................2311.001100000
.............................................................................................................................................................................AAATCACAGGATTATACTGTGAG.......................................................................................................2311.001100000
.......................................................................................................................................GCAGTATATTTTTGTGTTTTGTTT-...........................................................................................................................................2411.001100000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGCC.............................................................................................................................................2411.001010000
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGAA.....................................................................................................2311.001100000
..............................................................................................................................................................................AATCACAGGATTATACTGTT.........................................................................................................2011.001000100
..............................................................................................................................................................................AATCACAGGATTATACTGTGAAAA.....................................................................................................2411.001100000
.......................................................................................................TG-AA--C---AC------A-TTCGATGTCT.....................................................................................................................................................................1811.001000010
.....................................................................................................................................TCGCAGTATATTTTTGTGTTTTG...............................................................................................................................................2311.001100000
......................................................................................................................................CGCAGTATATTTTTGTGTC..................................................................................................................................................1911.001000001
......................................................................................................................................CGCAGTATATTTTTGTGTTC.................................................................................................................................................2011.001000001
..............................................................................................................................................................................AATCACAGGATTATACTTC..........................................................................................................1921.002100010
.....................................................................................................................................TCGCAGTATATTTTTGTGTTT.................................................................................................................................................2111.001010000
...................................................................................................................................................................................CAGGATTATACTGTGAGA......................................................................................................1811.001100000
...................................................................................................................................................................................CAGGATTATACTGTGAGT......................................................................................................1811.001100000
..................................................................................AATTATT--------------TG-AA--C---AC------A-TTCGATGTCT.....................................................................................................................................................................2511.001000010
...................................................................................................................................................................................CAGGATTATACTGTGAGC......................................................................................................1811.001100000
.............................................................................................................................................................................AAATCACAGGATTATACTGT..........................................................................................................2011.001100000
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1911.001100000
......................................................................................................................................CGCAGTATATTTTTGTGTTTTCC..............................................................................................................................................2311.001100000
.................................................................................................................................................................................CACAGGATTATACTGTGAGA......................................................................................................2011.001100000
.................................................................................................................................................................................CACAGGATTATACTGTGAC.......................................................................................................1911.001000010
......................................................................................................................................CGCAGTATATTTTTGTGTTTTGTT.............................................................................................................................................2411.001100000
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2011.001100000
droGri2
CATTA---------TTTAGAA--GTG---TTTTCAATTTGATATACATATATAGATAGATCTGTTAAG----------------------------------------CCCACCAC-------TGTCGATGTCTCGCAGTATATTTTTGTGTTTTGTTTATT-TTTGAAAATCAAATCACAGGATTATACTGTGAGTTATC------GCC---AGCAGCAAGGACAACCAAA----TTTTA------------------ATTTACCCAAATACAA-T-T-ACAC-----AAA--TATATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................................................................................AATCACAGGATTATACTGTGA........................................................................................................211155.001551532
......................................................................................................................................CGCAGTATATTTTTGTGTTTTG...............................................................................................................................................221142.001426181
..............................................................................................................................................................................AATCACAGGATTATACTGTG.........................................................................................................20120.0020200
..............................................................................................................................................................................AATCACAGGATTATACTGT..........................................................................................................19119.0019145
.......................................................................................................................................GCAGTATATTTTTGTGTTTTG...............................................................................................................................................2119.00981
...............................................................................................................................................................................ATCACAGGATTATACTGTGA........................................................................................................2017.00770
......................................................................................................................................CGCAGTATATTTTTGTGTTTT................................................................................................................................................2117.00743
..............................................................................................................................................................................AATCACAGGATTATACTGTGAG.......................................................................................................2213.00330
.......................................................................................................................................GCAGTATATTTTTGTGTTTT................................................................................................................................................2013.00330
..............................................................................................................................................................................AATCACAGGATTATACTG...........................................................................................................1813.00330
..............................................................................................................................................................................AATCACAGGATTATACTGTGAT.......................................................................................................2221.50330
...............................................................................................................................................................................ATCACAGGATTATACTGTG.........................................................................................................1911.00110
............................................................................................................CCCACCAC-------TGTCGATGTCT.....................................................................................................................................................................1911.00110
.........................................................................................................................................AGTATATTTTTGTGTTTTG...............................................................................................................................................1911.00110
...............................................................................................................................................................................ATCACAGGATTATACTGTGAG.......................................................................................................2111.00110
.............................................................................................................................................................................AAATCACAGGATTATACTGTGA........................................................................................................2211.00110
...............................................................................................................................................................................ATCACAGGATTATACTGT..........................................................................................................1811.00110
..................................................................................................................................................................................ACAGGATTATACTGTGAG.......................................................................................................1811.00110
...............................................................................................................................................................................ATCACAGGATTATACTGTGAGT......................................................................................................2211.00110
..............................................................................................................................................................................AATCACAGGATTATACTGTGATA......................................................................................................2320.50110
..........................................................................................................................................GTATATTTTTGTGTTTTG...............................................................................................................................................1820.50110

Generated: 10/20/2015 at 11:20 PM