ID:

dse-mir-1

 Coordinate:

scaffold_18:365668-365755 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.9 -33.7

Flybase annnotation

utr5 [utr5_plus_2646]; pre_miRNA [Dsec\mir-1-RM]; miRNA [Dsec\miR-1-RA]

No Repeatable elements found

Sense Strand Reads

CAAAAGTTAGCCGCGTTGTGGAAAATCCAAAACAAGGACCATCCCATCTTCAGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTTATACTCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGTTGAAACTGAAATTTAATTGAATCAGAAGTTGAACCTCAA

**************************************************..(((.......((((((((((((.((((((((.((((((.......))).))).)))))))).)))))))))))).......)))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total V113

male body		 M054

female body

 V114

embryo

 V115

head
.......................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................... 22 0 1 3611928.00 3611928 1491441 721459 763386 635642
.......................................................................................................TGGAATGTAAAGAAGTATGGAGA.............................................................. 23 1 1 257456.00 257456 170753 57163 2423 27117
.......................................................................................................TGGAATGTAAAGAAGTATGGA................................................................ 21 0 1 205205.00 205205 94285 89655 5825 15440
.......................................................................................................TGGAATGTAAAGAAGTATGGAGT.............................................................. 23 1 1 124089.00 124089 82416 18529 9160 13984
........................................................................................................GGAATGTAAAGAAGTATGGAG............................................................... 21 0 1 81158.00 81158 956 79179 546 477
.......................................................................................................TGGAATGTAAAGAAGTATGG................................................................. 20 0 1 60510.00 60510 34251 18302 693 7264
.......................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................... 22 1 1 15035.00 15035 9061 4516 320 1138
.......................................................................................................TGGAATGTAAAGAAGTATCGAG............................................................... 22 1 1 14240.00 14240 11896 1233 534 577
.......................................................................................................TGGAATGTAAAGAAGTATAGAG............................................................... 22 1 1 12131.00 12131 10561 299 364 907
.......................................................................................................TGGAATGTAAAGAAGTATTGAG............................................................... 22 1 1 11805.00 11805 7511 3153 362 779
........................................................................................................GGAATGTAAAGAAGTATGGA................................................................ 20 0 1 9669.00 9669 57 9600 4 8
.......................................................................................................TGAAATGTAAAGAAGTATGGAG............................................................... 22 1 1 8536.00 8536 2024 4419 1207 886
.......................................................................................................TGGAATGTAAGGAAGTATGGAG............................................................... 22 1 1 7426.00 7426 3741 758 1596 1331
.......................................................................................................TTGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 7339.00 7339 1322 4346 715 956
........................................................................................................GGAATGTAAAGAAGTATGGAGA.............................................................. 22 1 1 6931.00 6931 314 6591 1 25
.......................................................................................................TGTAATGTAAAGAAGTATGGAG............................................................... 22 1 1 6556.00 6556 1384 3243 878 1051
........................................................................................................TGAATGTAAAGAAGTATGGAG............................................................... 21 1 1 6505.00 6505 2077 1894 1448 1086
.......................................................................................................TGGAATGTAAAGAAGTATGGAGC.............................................................. 23 0 1 6377.00 6377 2862 766 1649 1100
.......................................................................................................TGGAATGTAAAGAAGTATGGGG............................................................... 22 1 1 6327.00 6327 1096 3948 827 456
......................................................................................................CTGGAATGTAAAGAAGTATGGAG............................................................... 23 1 1 6265.00 6265 2644 593 1625 1403
.........................................................................................................GAATGTAAAGAAGTATGGAGA.............................................................. 21 1 1 6177.00 6177 4395 935 19 828
.......................................................................................................TGGAATGTAAAGAAGTATGGAGAA............................................................. 24 2 1 5944.00 5944 3697 1839 19 389
.......................................................................................................TGGCATGTAAAGAAGTATGGAG............................................................... 22 1 1 5800.00 5800 1508 3733 260 299
.......................................................................................................TGGAATGTAAAGAAGCATGGAG............................................................... 22 1 1 5421.00 5421 2245 1662 972 542
.......................................................................................................TGGAATGCAAAGAAGTATGGAG............................................................... 22 1 1 5188.00 5188 1322 2764 520 582
.........................................................................................................GAATGTAAAGAAGTATGGAG............................................................... 20 0 1 5145.00 5145 1002 2968 468 707
.......................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................... 22 1 1 5001.00 5001 2762 1345 260 634
.......................................................................................................TGGAATGTAAAGAAGAATGGAG............................................................... 22 1 1 4921.00 4921 288 3764 740 129
.......................................................................................................TGGAATGTAAAGAGGTATGGAG............................................................... 22 1 1 4365.00 4365 1670 510 1486 699
.......................................................................................................TGGAGTGTAAAGAAGTATGGAG............................................................... 22 1 1 4330.00 4330 1710 345 1530 745
.......................................................................................................TGGAATTTAAAGAAGTATGGAG............................................................... 22 1 1 4080.00 4080 1060 1427 843 750
.......................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................... 22 1 1 4007.00 4007 2300 672 364 671
.......................................................................................................TGGAATGTAAAGAATTATGGAG............................................................... 22 1 1 3860.00 3860 624 2121 545 570
.......................................................................................................TGGAATGTCAAGAAGTATGGAG............................................................... 22 1 1 3626.00 3626 591 2681 185 169
.......................................................................................................TGGAATGTAAAGAAGTATGGCG............................................................... 22 1 1 3563.00 3563 2381 24 580 578
.......................................................................................................TCGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 3556.00 3556 1190 1206 584 576
.......................................................................................................TGGGATGTAAAGAAGTATGGAG............................................................... 22 1 1 3469.00 3469 1262 542 1214 451
.......................................................................................................CGGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 3389.00 3389 1304 737 787 561
.......................................................................................................TGGAATGTAAAGAAGTATGTAG............................................................... 22 1 1 3315.00 3315 866 1460 282 707
.......................................................................................................TGGAATGTAAAGAAGTATG.................................................................. 19 0 1 3274.00 3274 1608 1194 51 421
.......................................................................................................TGGAATGTAGAGAAGTATGGAG............................................................... 22 1 1 3174.00 3174 1357 295 976 546
.......................................................................................................TGGAATGTAACGAAGTATGGAG............................................................... 22 1 1 2987.00 2987 1045 1223 349 370
........................................................................................................GGAATGTAAAGAAGTATGGAGT.............................................................. 22 1 1 2926.00 2926 582 2106 126 112
.......................................................................................................TGGAATGTAAAGAAGGATGGAG............................................................... 22 1 1 2920.00 2920 220 2461 171 68
.......................................................................................................TGGAATGTAAAGAAGTATGCAG............................................................... 22 1 1 2919.00 2919 1577 372 404 566
.......................................................................................................TGGAATGTAAAGAAGTATGGAGTT............................................................. 24 2 1 2914.00 2914 2060 376 43 435
.......................................................................................................TGCAATGTAAAGAAGTATGGAG............................................................... 22 1 1 2798.00 2798 1028 528 584 658
.......................................................................................................TGGAATGTAAAGAACTATGGAG............................................................... 22 1 1 2790.00 2790 894 658 849 389
.......................................................................................................TGGAATATAAAGAAGTATGGAG............................................................... 22 1 1 2763.00 2763 754 629 516 864
.......................................................................................................TGGAATGTAAAGAAGTATGGAGAT............................................................. 24 2 1 2756.00 2756 1928 614 5 209
.......................................................................................................TGGAATGTAAAGAAGTACGGAG............................................................... 22 1 1 2695.00 2695 1248 389 632 426
.......................................................................................................TGGAATCTAAAGAAGTATGGAG............................................................... 22 1 1 2606.00 2606 881 466 783 476
.......................................................................................................TGGAATGTAAAGGAGTATGGAG............................................................... 22 1 1 2494.00 2494 986 313 797 398
.......................................................................................................TGGAATGTAAAGAAGTATGGT................................................................ 21 1 1 2441.00 2441 1887 231 8 315
.......................................................................................................TGGAATGTAAATAAGTATGGAG............................................................... 22 1 1 2424.00 2424 507 875 383 659
.......................................................................................................TGGAATGTAAAGAAGTATGAG................................................................ 21 2 1 2421.00 2421 743 902 449 327
.......................................................................................................TGGAATGTAAAGAAGTATGAAG............................................................... 22 1 1 2384.00 2384 790 500 319 775
.......................................................................................................TGGAACGTAAAGAAGTATGGAG............................................................... 22 1 1 2327.00 2327 1090 288 546 403
.......................................................................................................TGGACTGTAAAGAAGTATGGAG............................................................... 22 1 1 2314.00 2314 1289 348 359 318
.......................................................................................................TGGAATGTAAAGAAGTGTGGAG............................................................... 22 1 1 2284.00 2284 836 280 742 426
.......................................................................................................TGGAATGTGAAGAAGTATGGAG............................................................... 22 1 1 2266.00 2266 837 176 808 445
........................................................................................................GGAATGTAAAGAAGTATGG................................................................. 19 0 1 1975.00 1975 23 1942 2 8
.......................................................................................................TAGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 1704.00 1704 552 321 302 529
.......................................................................................................TGGAATGTAAACAAGTATGGAG............................................................... 22 1 1 1678.00 1678 688 170 523 297
.......................................................................................................TGGAATGAAAAGAAGTATGGAG............................................................... 22 1 1 1671.00 1671 237 347 280 807
.......................................................................................................TGGAATGTAAAGAAGTCTGGAG............................................................... 22 1 1 1539.00 1539 816 11 458 254
.......................................................................................................TGGAATGTAAAAAAGTATGGAG............................................................... 22 1 1 1539.00 1539 491 249 581 218
......................................................................................................CTGGAATGTAAAGAAGTATGGAGA.............................................................. 24 2 1 1451.00 1451 1017 54 28 352
.......................................................................................................TGGAATGTAAAGAAGTATGGAAA.............................................................. 23 2 1 1435.00 1435 991 364 1 79
.......................................................................................................TGGAATGTAAAGAAGTATCGAGA.............................................................. 23 2 1 1382.00 1382 1304 54 2 22
.......................................................................................................AGGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 1291.00 1291 135 639 108 409
.........................................................................................................TAATGTAAAGAAGTATGGAG............................................................... 20 1 1 1279.00 1279 438 205 359 277
.......................................................................................................TGGAATGTAAAGACGTATGGAG............................................................... 22 1 1 1237.00 1237 631 28 371 207
.......................................................................................................TGGAATGTAAAGAAGTATGGAGTA............................................................. 24 2 1 1220.00 1220 875 215 8 122
.......................................................................................................TGGAATGTAAAGAAGTATAGAGA.............................................................. 23 2 1 1192.00 1192 1141 26 0 25
.......................................................................................................TGGAATGTAAAGCAGTATGGAG............................................................... 22 1 1 1157.00 1157 678 22 288 169
.......................................................................................................TGGAATGTAAAGATGTATGGAG............................................................... 22 1 1 1157.00 1157 165 397 538 57
.......................................................................................................TGGAATGTAAAGAAATATGGAG............................................................... 22 1 1 1138.00 1138 304 159 545 130
.......................................................................................................TGGAATGTAAAGAAGTATTGAGA.............................................................. 23 2 1 1097.00 1097 870 184 3 40
.......................................................................................................GGGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 1025.00 1025 110 577 108 230
.......................................................................................................TGGAATGTACAGAAGTATGGAG............................................................... 22 1 1 1016.00 1016 577 32 254 153
.......................................................................................................TGGAATGTAATGAAGTATGGAG............................................................... 22 1 1 934.00 934 194 80 540 120
.......................................................................................................TGGAATGTAAAGAAGTATCGA................................................................ 21 1 1 921.00 921 738 166 3 14
........................................................................................................GGAATGTAAAGAAGTATGGAT............................................................... 21 1 1 859.00 859 2 857 0 0
.......................................................................................................TGGAATGTAAAGAAGTATTGA................................................................ 21 1 1 849.00 849 496 335 3 15
.......................................................................................................TGGAATGTAAAGAAGTAAGGAG............................................................... 22 1 1 811.00 811 178 143 167 323
.......................................................................................................TGGAATGTAAAGAAGTATGGAGTTT............................................................ 25 3 1 773.00 773 576 76 3 118
.......................................................................................................TGAAATGTAAAGAAGTATGGA................................................................ 21 1 1 765.00 765 137 587 9 32
.......................................................................................................TGGAATGTAAGGAAGTATGGAGA.............................................................. 23 2 1 762.00 762 583 93 3 83
.......................................................................................................TGGAATGTAAAGAAGTATGGAGG.............................................................. 23 1 1 755.00 755 221 468 25 41
.......................................................................................................TGGAATGTAAAGAAGTATGGG................................................................ 21 1 1 753.00 753 85 620 28 20
.......................................................................................................TGGAATGTAAAGAAGTATAGA................................................................ 21 1 1 741.00 741 672 40 6 23
.......................................................................................................TGGAAAGTAAAGAAGTATGGAG............................................................... 22 1 1 733.00 733 51 155 48 479
.......................................................................................................TTGAATGTAAAGAAGTATGGA................................................................ 21 1 1 724.00 724 105 579 9 31
......................................................................................................CTGGAATGTAAAGAAGTATGGA................................................................ 22 1 1 684.00 684 369 69 74 172
.......................................................................................................TGGAATGTAGGGAAGTATGGAG............................................................... 22 2 1 680.00 680 545 54 2 79
..........................................................................................................AATGTAAAGAAGTATGGAG............................................................... 19 0 1 657.00 657 84 311 168 94
.........................................................................................................GAATGTAAAGAAGTATGGAGAA............................................................. 22 2 1 653.00 653 406 127 2 118
.......................................................................................................TGGAATGTAAAGAAGTATCGAGT.............................................................. 23 2 1 630.00 630 604 16 3 7
.......................................................................................................TGAAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 618.00 618 247 315 0 56
.......................................................................................................TGGAATGTAAAGAAGTATAGAGT.............................................................. 23 2 1 604.00 604 565 12 4 23
.......................................................................................................TGGAATGTAAAGAAGTATGGAGAAA............................................................ 25 2 1 596.00 596 423 132 2 39
.......................................................................................................TGGCATGTAAAGAAGTATGGA................................................................ 21 1 1 588.00 588 83 499 1 5
.......................................................................................................TTGAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 554.00 554 181 320 7 46
.......................................................................................................TGTAATGTAAAGAAGTATGGA................................................................ 21 1 1 550.00 550 112 388 11 39
........................................................................................................CGAATGTAAAGAAGTATGGAG............................................................... 21 1 1 541.00 541 170 123 123 125
.......................................................................................................TGGTATGTAAAGAAGTATGGAG............................................................... 22 1 1 529.00 529 127 117 238 47
.......................................................................................................TGGAATGTAAAGAAGTTTGGAG............................................................... 22 1 1 516.00 516 145 85 202 84
........................................................................................................GGAATGTAAAGAAGTATGGAA............................................................... 21 1 1 515.00 515 5 509 0 1
...........................................................................................................ATGTAAAGAAGTATGGAG............................................................... 18 0 1 508.00 508 128 166 189 25
.......................................................................................................TGGAATGTAAAGAAGAATGGA................................................................ 21 1 1 502.00 502 36 454 8 4
.......................................................................................................TGTAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 501.00 501 177 248 4 72
.........................................................................................................GAATGTAAAGAAGTATGGAGT.............................................................. 21 1 1 495.00 495 278 114 38 65
.......................................................................................................TGGAATGTAAAGAAGTATGA................................................................. 20 1 1 483.00 483 184 263 4 32
.......................................................................................................TGGCATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 475.00 475 176 288 0 11
.........................................................................................................AAATGTAAAGAAGTATGGAG............................................................... 20 1 1 473.00 473 173 149 96 55
........................................................................................................TGAATGTAAAGAAGTATGGAGA.............................................................. 22 2 1 471.00 471 249 156 6 60
........................................................................................................TGAATGTAAAGAAGTATGGA................................................................ 20 1 1 469.00 469 140 269 16 44
.......................................................................................................TGGAATGTATAGAAGTATGGAG............................................................... 22 1 1 464.00 464 134 143 120 67
.......................................................................................................TGGAATGTAAAGAAGTATTGAGT.............................................................. 23 2 1 454.00 454 369 64 3 18
.......................................................................................................TGTAATGTAAAGAAGTATTGAG............................................................... 22 2 1 445.00 445 6 434 0 5
.....................................................................................................TCTGGAATGTAAAGAAGTATGGAG............................................................... 24 1 1 445.00 445 183 5 147 110
.......................................................................................................TGGAATGCAAAGAAGTATGGA................................................................ 21 1 1 422.00 422 85 318 2 17
.........................................................................................................GAATGTAAAGAAGTATGGA................................................................ 19 0 1 418.00 418 38 355 9 16
.......................................................................................................TGGAATGTCAAGAAGTATGGA................................................................ 21 1 1 400.00 400 45 352 1 2
.......................................................................................................TGGAATGTAAAGAAGTATGGGGA.............................................................. 23 2 1 398.00 398 118 253 3 24
........................................................................................................GGACTGTAAAGAAGTATGGAG............................................................... 21 1 1 394.00 394 0 394 0 0
........................................................................................................GTAATGTAAAGAAGTATGGAG............................................................... 21 1 1 389.00 389 6 376 3 4
.......................................................................................................TGGAATGCAAAGAAGTATGGAGA.............................................................. 23 2 1 388.00 388 142 219 1 26
.......................................................................................................TGGAAGGTAAAGAAGTATGGAG............................................................... 22 1 1 388.00 388 78 233 53 24
.......................................................................................................TGGAATGTAAAGAAGCATGGAGA.............................................................. 23 2 1 387.00 387 263 94 3 27
......................................................................................................TTGGAATGTAAAGAAGTATGGAG............................................................... 23 1 1 380.00 380 8 360 6 6
.......................................................................................................TGGAATGTAAGGAAGTATGGA................................................................ 21 1 1 378.00 378 256 84 13 25
.......................................................................................................TGGATTGTAAAGAAGTATGGAG............................................................... 22 1 1 372.00 372 131 34 116 91
.......................................................................................................TGGAATGTAAAGAATTATGGA................................................................ 21 1 1 368.00 368 45 286 10 27
.......................................................................................................TGGAATGTAAAGAAGCATGGA................................................................ 21 1 1 367.00 367 159 181 6 21
.......................................................................................................TGGAATGTAAAGTAGTATGGAG............................................................... 22 1 1 360.00 360 90 100 130 40
.......................................................................................................TGGAATGTTAAGAAGTATGGAG............................................................... 22 1 1 353.00 353 83 31 195 44
.......................................................................................................TGGAATGTAAAGAAGAATGGAGA.............................................................. 23 2 1 346.00 346 50 284 4 8
.......................................................................................................TGGAATGTAAAGAAGTATAG................................................................. 20 1 1 340.00 340 255 70 0 15
........................................................................................................GGAATGTACAGAAGTATGGAG............................................................... 21 1 1 336.00 336 2 333 1 0
.......................................................................................................TGGAATGTGTAGAAGTATGGAG............................................................... 22 2 1 328.00 328 52 24 226 26
.......................................................................................................TGGAATGTCAAGAAGTATGTAG............................................................... 22 2 1 322.00 322 1 321 0 0
........................................................................................................GAAATGTAAAGAAGTATGGAG............................................................... 21 1 1 321.00 321 6 309 4 2
.......................................................................................................TGGAATGTAAAGAAGTATGGTG............................................................... 22 1 1 319.00 319 165 41 42 71
.........................................................................................................GAATGTAAAGAAGTATGGAGTT............................................................. 22 2 1 307.00 307 187 24 17 79
.......................................................................................................TGGAATGTAAAGAAGTATGGAGTTA............................................................ 25 2 1 305.00 305 236 46 1 22
.......................................................................................................TGGAATGTAAAGAAGTATGGAGAAT............................................................ 25 3 1 301.00 301 228 57 1 15
.......................................................................................................TGGAATGTCAAGAAGTATGGAGA.............................................................. 23 2 1 291.00 291 82 202 0 7
.......................................................................................................TGGAATGTAAAGAAGGATGGA................................................................ 21 1 1 290.00 290 24 262 2 2
........................................................................................................GGAATGTAAAGAAGTATGTAG............................................................... 21 1 1 289.00 289 8 281 0 0
.......................................................................................................TGGAATGTAAAGAAGTATCG................................................................. 20 1 1 281.00 281 259 17 0 5
.......................................................................................................TGGAATGTAACGAAGTATGGA................................................................ 21 1 1 279.00 279 127 134 6 12
.......................................................................................................TGGAATGTAAAGAAGTATGGAGTAA............................................................ 25 2 1 279.00 279 192 77 0 10
......................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................... 23 0 1 274.00 274 18 224 21 11
.......................................................................................................TCGAATGTAAAGAAGTATGGA................................................................ 21 1 1 272.00 272 75 166 12 19
.......................................................................................................TCGAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 271.00 271 145 78 4 44
.......................................................................................................TGGAATTTAAAGAAGTATGGAGA.............................................................. 23 2 1 271.00 271 123 108 5 35
.......................................................................................................TGGAATTTAAAGAAGTATGGA................................................................ 21 1 1 269.00 269 78 166 7 18
.......................................................................................................TGGAGTGTAAAGAAGTATGGAGA.............................................................. 23 2 1 261.00 261 194 33 5 29
.......................................................................................................TGGAATGTAAAGAATTATGGAGA.............................................................. 23 2 1 256.00 256 42 181 2 31
.......................................................................................................TGGAATGTAAAGAGGTATGGAGA.............................................................. 23 2 1 252.00 252 173 38 8 33
.......................................................................................................TGGAATGTAAAGAAGTATTG................................................................. 20 1 1 250.00 250 175 70 0 5
.......................................................................................................TGGAATGTAAGTAAGTATGGAG............................................................... 22 2 1 250.00 250 59 16 142 33
.......................................................................................................TGAAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 248.00 248 105 108 14 21
.......................................................................................................TGGAATGTAAGGAAGTATGGAGT.............................................................. 23 2 1 241.00 241 179 24 18 20
.......................................................................................................TGGAATGTAACGAAGTATGGAGA.............................................................. 23 2 1 238.00 238 125 90 1 22
........................................................................................................GGAATGTAAAGTAGTATGGAG............................................................... 21 1 1 237.00 237 0 236 1 0
..........................................................................................................AATGTAAAGAAGTATGGAGA.............................................................. 20 1 1 232.00 232 108 86 2 36
.......................................................................................................TGGAATGTAGAGAAGTATGGAGA.............................................................. 23 2 1 229.00 229 166 37 2 24
.......................................................................................................TGGAATGTAAAGAAGTATGGATA.............................................................. 23 2 1 225.00 225 137 50 3 35
.......................................................................................................TGGAATGTAAAGAGGTATGGA................................................................ 21 1 1 224.00 224 124 70 13 17
.......................................................................................................TGGAATGTAAAGAAGTATGTAGA.............................................................. 23 2 1 224.00 224 112 75 1 36
........................................................................................................GGAATGTAAAGAAGTATTGAG............................................................... 21 1 1 224.00 224 0 222 0 2
......................................................................................................GTGGAATGTAAAGAAGTATGGAG............................................................... 23 1 1 221.00 221 1 218 1 1
.......................................................................................................CGGAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 218.00 218 145 45 3 25
.......................................................................................................TGGAATGTAAAGAAGTATGT................................................................. 20 1 1 216.00 216 104 99 0 13
.......................................................................................................TGGGATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 215.00 215 148 44 6 17
.......................................................................................................TGGAATGTAAAGAAGTATGGAGTAT............................................................ 25 3 1 208.00 208 147 44 2 15
......................................................................................................CTGGAATGTAAAGAAGTATGGAGT.............................................................. 24 2 1 208.00 208 128 16 33 31
.......................................................................................................TGGAATGTAAAGAAGCATGGAGT.............................................................. 23 2 1 206.00 206 140 34 8 24
.......................................................................................................TGGAATGTAAAGAAGTAGGGAG............................................................... 22 1 1 206.00 206 85 34 45 42
.......................................................................................................TGGAATGTAAAGAAGTAT................................................................... 18 0 1 206.00 206 2 171 5 28
........................................................................................................GGAATGTAAAGAAGTATGGAGAA............................................................. 23 2 1 206.00 206 6 200 0 0
.......................................................................................................TGGCATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 204.00 204 93 108 1 2
.......................................................................................................TGGAATGGAAAGAAGTATGGAG............................................................... 22 1 1 203.00 203 52 110 20 21
.......................................................................................................TGGACTGTAAAGAAGTATGGAGA.............................................................. 23 2 1 202.00 202 152 38 0 12
.......................................................................................................TGGAATGTAAAGAACTATGGA................................................................ 21 1 1 202.00 202 64 118 10 10
.......................................................................................................CGGAATGTAAAGAAGTATGGA................................................................ 21 1 1 201.00 201 73 105 10 13
........................................................................................................TGAATGTAAAGAAGTATGGAGT.............................................................. 22 2 1 200.00 200 89 55 23 33
........................................................................................................GGAATGAAAAGAAGTATGGAG............................................................... 21 1 1 200.00 200 0 200 0 0
.......................................................................................................TGGAGTGTAAAGAAGTATGGA................................................................ 21 1 1 196.00 196 130 41 11 14
.......................................................................................................TGGAATGCAACGAAGTATGGAG............................................................... 22 2 1 193.00 193 1 191 1 0
........................................................................................................TAAATGTAAAGAAGTATGGAG............................................................... 21 2 1 193.00 193 66 82 23 22
.......................................................................................................TGTAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 192.00 192 72 81 11 28
.......................................................................................................TGGAATGTAAAGAAGTACGGAGA.............................................................. 23 2 1 192.00 192 146 29 0 17
.......................................................................................................TGCAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 192.00 192 115 36 1 40
.......................................................................................................TGGAATGTAAATAAGTATGGA................................................................ 21 1 1 189.00 189 29 137 4 19
.......................................................................................................TGGAATGTAAATAAGTATGGAGA.............................................................. 23 2 1 186.00 186 71 65 4 46
.......................................................................................................TGGAATGTAAAGAAGGATGGAGA.............................................................. 23 2 1 185.00 185 36 145 2 2
.......................................................................................................TGGAATGTAAAGAAGTATGGGGT.............................................................. 23 2 1 184.00 184 75 87 14 8
.......................................................................................................TGGAATGTAAAGAAGTATGAA................................................................ 21 1 1 181.00 181 29 133 2 17
.......................................................................................................TTGAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 178.00 178 50 97 12 19
.......................................................................................................TGCAATGTAAAGAAGTATGGA................................................................ 21 1 1 176.00 176 75 78 6 17
.......................................................................................................TGGAATGTAAAGAAGTATGTA................................................................ 21 1 1 172.00 172 35 120 2 15
.......................................................................................................TGGAATGTAAAGAAGTATGGAAT.............................................................. 23 2 1 171.00 171 109 42 2 18
.......................................................................................................TGGAATCTAAAGAAGTATGGAGA.............................................................. 23 2 1 170.00 170 110 39 3 18
.......................................................................................................TGGAATGTAAAGAAGTATGGAGATT............................................................ 25 3 1 170.00 170 134 22 0 14
........................................................................................................TGGATGTAAAGAAGTATGGAG............................................................... 21 2 2 170.00 340 112 36 160 32
........................................................................................................GGGATGTAAAGAAGTATGGAG............................................................... 21 1 1 167.00 167 2 164 1 0
.......................................................................................................TGGAACGTAAAGAAGTATGGAGA.............................................................. 23 2 1 167.00 167 126 20 3 18
........................................................................................................GGAATGTAAAGAAGTATCGAG............................................................... 21 1 1 167.00 167 1 165 1 0
.......................................................................................................TGGAATGTAAAGAAGTATGGATT.............................................................. 23 2 1 163.00 163 77 65 4 17
........................................................................................................GGAATGTAAAGAATTATGGAG............................................................... 21 1 1 161.00 161 0 161 0 0
.......................................................................................................TGGGATGTAAAGAAGTATGGA................................................................ 21 1 1 158.00 158 72 60 15 11
......................................................................................................CTGGAATGTAAAGAAGTATGG................................................................. 21 1 1 157.00 157 105 15 2 35
.......................................................................................................TTGAATGTAAAGAAGTATGG................................................................. 20 1 1 156.00 156 34 109 0 13
.......................................................................................................TGGAGTGTAAAGAAGTATGGAGT.............................................................. 23 2 1 155.00 155 106 13 21 15
.......................................................................................................TGGAATGTAAAGAACTATGGAGA.............................................................. 23 2 1 154.00 154 87 51 4 12
.......................................................................................................TGGAATATAAAGAAGTATGGAGA.............................................................. 23 2 1 154.00 154 76 45 3 30
.......................................................................................................TGGAATGTAGAGAAGTATGGA................................................................ 21 1 1 153.00 153 87 35 10 21
.......................................................................................................TGGAATGCAAAGAAGTATGGAGT.............................................................. 23 2 1 150.00 150 64 70 3 13
.......................................................................................................TGGAATATAAAGAAGTATGGA................................................................ 21 1 1 150.00 150 48 77 7 18
.......................................................................................................TGGAATGTGAAGAAGTATGGAGA.............................................................. 23 2 1 146.00 146 111 18 4 13
.......................................................................................................TGGAATGTAAAGAAGTATGGC................................................................ 21 1 1 145.00 145 88 30 5 22
.......................................................................................................TGGCATGTAAAGAAGTATTGAG............................................................... 22 2 1 145.00 145 6 138 0 1
.......................................................................................................TGGAATGTAAAGAAGTACGGA................................................................ 21 1 1 145.00 145 77 59 3 6
.......................................................................................................TGGAATGTCACGAAGTATGGAG............................................................... 22 2 1 145.00 145 0 136 2 7
.......................................................................................................TGGAATCTAAAGAAGTATGGA................................................................ 21 1 1 144.00 144 54 58 15 17
.......................................................................................................TGGAATGTAAAGAAGTGTGGAGA.............................................................. 23 2 1 143.00 143 103 17 1 22
........................................................................................................GGAATGTAAAGAAGTTTGGAG............................................................... 21 1 1 142.00 142 1 141 0 0
.......................................................................................................TGGAATGTAAAGAAGAATGGAGT.............................................................. 23 2 1 141.00 141 17 114 9 1
.......................................................................................................TGGAATGTAAAGAAGTATGGCGA.............................................................. 23 2 1 141.00 141 127 0 1 13
.......................................................................................................TGGAATGTAAAGAAGTATGCAGA.............................................................. 23 2 1 141.00 141 105 10 0 26
.......................................................................................................TGGACTGTAAAGAAGTATGGA................................................................ 21 1 1 141.00 141 74 54 3 10
........................................................................................................GGAATGTAAAGAAGAATGGAG............................................................... 21 1 1 140.00 140 0 139 1 0
.......................................................................................................TGGAATGTAAAGGAGTATGGAGA.............................................................. 23 2 1 140.00 140 106 19 3 12
.........................................................................................................GAATGTAAAGAAGTATGGAGAAA............................................................ 23 2 1 139.00 139 81 20 1 37
.......................................................................................................TGGAATGTAAAGAAGTATGGACA.............................................................. 23 2 1 139.00 139 109 15 2 13
.......................................................................................................TGGCATGTAAAGAAGTATGG................................................................. 20 1 1 136.00 136 40 94 0 2
.......................................................................................................TGGAATGTAAACAAGTATGGAGA.............................................................. 23 2 1 135.00 135 90 22 1 22
.......................................................................................................TGGAATGTAAAGGAGTATGGA................................................................ 21 1 1 135.00 135 77 41 8 9
........................................................................................................GGAATGTAAAGAAGTATGGAGC.............................................................. 22 0 1 134.00 134 17 95 7 15
.......................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................... 22 2 1 134.00 134 96 9 7 22
.......................................................................................................TGAAATGTAAAGAAGTATGG................................................................. 20 1 1 132.00 132 39 85 3 5
.......................................................................................................TGGAACGTAAAGAAGTATGGA................................................................ 21 1 1 131.00 131 70 39 5 17
........................................................................................................GGAATGTAAAGAAGTATG.................................................................. 18 0 1 131.00 131 1 130 0 0
.........................................................................................................GAATGTAAAGAAGTATGGAGTA............................................................. 22 2 1 130.00 130 99 18 2 11
.......................................................................................................TGGAATGCAAAGAAGTATGG................................................................. 20 1 1 129.00 129 31 93 0 5
.......................................................................................................TGTAATGTAAAGAAGTATGG................................................................. 20 1 1 129.00 129 40 74 2 13
.......................................................................................................TGGAATGTAAAGAAGTATGGAGAC............................................................. 24 2 1 129.00 129 75 44 1 9
.......................................................................................................TGGAATTTAAAGAAGTATGGAGT.............................................................. 23 2 1 128.00 128 69 34 15 10
........................................................................................................GGAATTTAAAGAAGTATGGAG............................................................... 21 1 1 126.00 126 2 123 0 1
.......................................................................................................TGGGATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 125.00 125 85 9 22 9
........................................................................................................GGAATGTAAAGAAGGATGGAG............................................................... 21 1 1 121.00 121 0 121 0 0
.........................................................................................................TAATGTAAAGAAGTATGGAGA.............................................................. 21 2 1 121.00 121 61 29 3 28
.......................................................................................................TGGAATGTAAAGAAGTATGGTA............................................................... 22 2 1 120.00 120 82 14 0 24
.......................................................................................................TAGAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 119.00 119 60 28 0 31
.......................................................................................................CGGAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 117.00 117 75 17 12 13
.......................................................................................................TGGAATGTAAAGAAGTAGAG................................................................. 20 2 1 116.00 116 16 82 12 6
.......................................................................................................TGGAATGTAAGGAAGTATGG................................................................. 20 1 1 114.00 114 91 11 0 12
....................................................................................................ATCTGGAATGTAAAGAAGTATGGAG............................................................... 25 1 1 110.00 110 50 0 34 26
........................................................................................................TCAATGTAAAGAAGTATGGAG............................................................... 21 2 1 108.00 108 41 5 19 43
.......................................................................................................TGGAATGTAAAGCAGTATGGAGA.............................................................. 23 2 1 108.00 108 94 4 3 7
.......................................................................................................TGGAATGTCAAGAAGTATGGAGT.............................................................. 23 2 1 107.00 107 31 69 0 7
.......................................................................................................TGGAATGTAAAGCAGTATGGA................................................................ 21 1 1 107.00 107 98 4 2 3
.......................................................................................................TGGAATGTAAAGAAGTACGGAGT.............................................................. 23 2 1 106.00 106 82 11 4 9
.......................................................................................................TGGAATGTAAAGAGGTATGGAGT.............................................................. 23 2 1 105.00 105 69 10 12 14
.......................................................................................................TGGAATGTAAAGAATTATGGAGT.............................................................. 23 2 1 104.00 104 33 55 6 10
.......................................................................................................AGGAATGTAAAGAAGTATGGA................................................................ 21 1 1 103.00 103 14 81 0 8
.......................................................................................................TGGAATGTAAAGAATTATGG................................................................. 20 1 1 103.00 103 16 78 0 9
.......................................................................................................TGGAATGTAAAGAAGTGTGGA................................................................ 21 1 1 102.00 102 57 28 3 14
.......................................................................................................TGGAATGTAGAGAAGTATGGAGT.............................................................. 23 2 1 102.00 102 70 11 7 14
.......................................................................................................TGGAATGTAAAGAAGTATGAGA............................................................... 22 3 1 102.00 102 62 29 2 9
.....................................................................................................AATGGAATGTAAAGAAGTATGGAG............................................................... 24 1 1 101.00 101 28 12 29 32
.......................................................................................................TGGAATGTAAAGAAGTATGTAGT.............................................................. 23 2 1 101.00 101 50 27 7 17
.......................................................................................................TGGAATGTGAAGAAGTATGGA................................................................ 21 1 1 99.00 99 58 23 4 14
.......................................................................................................TCGAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 98.00 98 58 23 7 10
.......................................................................................................TGGAATGTAACGAAGTATGGAGT.............................................................. 23 2 1 98.00 98 54 31 2 11
.......................................................................................................TGGAATGTAGGGAAGTATGGAGA.............................................................. 23 3 1 98.00 98 74 15 0 9
........................................................................................................GGAATGTAAAGAAGTATGAG................................................................ 20 2 1 98.00 98 0 97 1 0
.......................................................................................................TGGAATGAAAAGAAGTATGGAGA.............................................................. 23 2 1 97.00 97 35 31 1 30
.......................................................................................................TGGAATGTAAAGAAGTATGGACT.............................................................. 23 2 1 96.00 96 74 15 0 7
.......................................................................................................TGGAATGTAAAGACGTATGGAGA.............................................................. 23 2 1 95.00 95 83 2 1 9
.......................................................................................................TGGAATGTAAACAAGTATGGA................................................................ 21 1 1 95.00 95 49 29 6 11
.......................................................................................................TGGACTGTAAAGAAGTATGGAGT.............................................................. 23 2 1 93.00 93 72 10 5 6
.......................................................................................................TGGAATGTAAAGAAGTATGAAGA.............................................................. 23 2 1 93.00 93 44 31 0 18
.......................................................................................................TAGAATGTAAAGAAGTATGGA................................................................ 21 1 1 93.00 93 38 44 1 10
.........................................................................................................GAATGTAAAGAAGTATGG................................................................. 18 0 1 92.00 92 7 77 0 8
.......................................................................................................TGCAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 92.00 92 53 14 5 20
........................................................................................................GGAATGCAAAGAAGTATGGAG............................................................... 21 1 1 91.00 91 0 91 0 0
.................................................................CCATGCTTCCTTGCATTCAATA..................................................................................................... 22 0 1 89.00 89 2 66 18 3
.......................................................................................................TGGAATGTAAAGAACTATGGAGT.............................................................. 23 2 1 89.00 89 56 21 7 5
.......................................................................................................TGGAATGTAAAGAAGCATGG................................................................. 20 1 1 88.00 88 44 35 1 8
.......................................................................................................TGGAATGTAAAGGAGTATGGAGT.............................................................. 23 2 1 87.00 87 56 9 15 7
........................................................................................................GGAACGTAAAGAAGTATGGAG............................................................... 21 1 1 87.00 87 2 85 0 0
.......................................................................................................TGGAATGTACAGAAGTATGGAGA.............................................................. 23 2 1 86.00 86 75 2 2 7
.......................................................................................................TGGAATGTAACGAAGTATGG................................................................. 20 1 1 86.00 86 42 35 1 8
.......................................................................................................TGGAATGTAAAGAAGTATGGAGATA............................................................ 25 2 1 85.00 85 67 10 0 8
.......................................................................................................TGGAATGTAAAAAAGTATGGAGA.............................................................. 23 2 1 85.00 85 57 18 1 9
.......................................................................................................TGGAATGTAAAAAAGTATGGA................................................................ 21 1 1 84.00 84 25 49 4 6

Anti-sense strand reads

GTTTTCAATCGGCGCAACACCTTTTAGGTTTTGTTCCTGGTAGGGTAGAAGTCGGAAACTCTCAAGGTACGAAGGAACGTAAGTTATCAATATGAGTTCGTATACCTTACATTTCTTCATACCTCGCTTTAGACCGCTCTGTAGCCTCAACTTTGACTTTAAATTAACTTAGTCTTCAACTTGGAGTT

************************************************..(((.......((((((((((((.((((((((.((((((.......))).))).)))))))).)))))))))))).......)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054

female body

 V113

male body		 V114

embryo
...............................................................GAGGTACGAAGCAACGTAAGGT....................................................................................................... 22 3 2 1.50 3 3 0 0
...............................................................GAGGTACGAAGCAATGTAAGTT....................................................................................................... 22 3 2 1.00 2 2 0 0
................................................................AGGTACGAAGCAACGTAAGGT....................................................................................................... 21 2 1 1.00 1 1 0 0
................................................................AGGTATGAAGGAACGTAAGGT....................................................................................................... 21 2 2 0.50 1 1 0 0
................................................................AGGTACGAAGAAACGTAAGGT....................................................................................................... 21 2 2 0.50 1 1 0 0
................................................................AGGTATGAAGGAATGTAAGT........................................................................................................ 20 2 2 0.50 1 0 1 0
.................................................................GGTACGAAGAAATGTAAGTT....................................................................................................... 20 2 3 0.33 1 1 0 0
...............................................................GAGGTAGGAAGGAACGTAAGGT....................................................................................................... 22 3 3 0.33 1 1 0 0
.................................................................GGTACGAAGGAATGTAAGGT....................................................................................................... 20 2 3 0.33 1 0 1 0
................................................................AGGTAAGAAGCAACGTAAGGT....................................................................................................... 21 3 6 0.33 2 2 0 0
...............................................................TAGGTACGAAGAAACGTAAGGT....................................................................................................... 22 3 3 0.33 1 0 0 1
........................TAGGTCTTGTACCTGCTAG................................................................................................................................................. 19 3 20 0.05 1 1 0 0
.................................................AGTCGGAAACCATCAAGGG........................................................................................................................ 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_18:365618-365805 + dse-mir-1 Known_mirbase C-AAAAGT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AGGACCATCCCATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGT----------------------------------TGAAACTG------AAA--------------TTTAATTGAATCAGAAGTTGAACCTC---------------------------------------------------AA
droSim2 2l:19943999-19944186 + dsi-mir-1 Known_mirbase C-AAAAGT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AAGACCATCCCATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGT----------------------------------TGAAACTG------AAA--------------TTTGATTGAAACAGAAGTTGAACCTT---------------------------------------------------AA
dm3 chr2L:20487393-20487586 + dme-mir-1 Known_mirbase C-AAAAGT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AAGACCATCCCATATTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGT----------------------------------TGAAACTAAAACTGAAA--------------TTTGATTGAAACAGAAGTAGAACCGT---------------------------------------------------AA
droEre2 scaffold_4845:3954251-3954397 - der-mir-1 Known_mirbase C-AAAACA--CCGAAACC----TAGC-------CG-----------------------------AAACA----AGGACC--------TCCAGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGA--------------------------------------AAATTA------AAA--------------TGT----------------------------AA--------------------------------------------AG
droYak3 2R:6842676-6842914 + dya-mir-1 Known_mirbase C-AAAACT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AAGAACATCCCACCATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCGGAGT----------------------------------TGAAAGTA------AAA--GA-AAAGAGCA-TTTGATTGAATCGCCAATTGAACAAT----TAATAAGCCCCTATATTTCTGGGCATACATATGTACATAA-------AA
droEug1 scf7180000409767:814638-814801 - T-AAAAGT--------------TAAC-------CGC-TCGCGGGTGAAGGAAA-AAAATATGAAAAACA----AAGAACT-----TTATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAG-AAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAAGT----------------------------------TGAAAATA------------------------------------------------------------------------------------------------------
droBia1 scf7180000302422:7601713-7601904 - C-AAAAGTTAAC-------------C-------CGCGAGA---------TAT------------AAACA----GGGAGCA-----GAATCGGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTAT-TCAAGCCTATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTTACATCAGTGT----------------------------------TCCAAAAA----------------GATACATATTGC----T-T-ACCAGTGATT----ATTTT------------------------------ATTCATAAAAAACATAC
droTak1 scf7180000415115:70127-70307 - T-AAAAGT--------------TAAC-------CGG-CGGAGAATTTGGTGGA-GAAATACACAAAACA----AGAAACA-----TAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAAACATCGAAGA----------------------------------TAT----------CAAA--AA----------------------------TGATTT-TAATTTTA--------------------------------------------AT
droEle1 scf7180000491186:467187-467366 + T-AAAAGT--------------TAAC-------CGGGGGG---------TGAA--AA--AAGGAAACGA----AATAACA-----TAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTGACATCGAAGT----------------------------------AGA--GTG------AAAACATAA-AGA-------------A-C-GAAAGTGAATGTC---------------------------------------------------AA
droRho1 scf7180000761038:637-811 - T-AAAAGT--------------TAAA-------CGGGTGG--------GTGAAAAAA--ATG-AAAACA---AAAGAACA-----TTATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATCGCAGC----------------------------------TAA--GTGT----AAAA--TA-A-GGA-------------A-T-GGAAGTGA----------------------------------------------------------
droFic1 scf7180000448593:10031-10194 + A---AAGT--------------TGAA-------CGGGTCG--------CTGGA--AA--AT--AAAACA---AAGAAACG-----TAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAACTCATCGAAT------------------------------------AAAAGTG---------------------------ATTTAACCAGTAA------------------------------------------------------------TA
droKik1 scf7180000302408:678951-679129 + T-AAAAGT--------------TAGC-------TGG-CAG---------CGGA--AA--AT--AAACCAGTGAAATAA---CCCATTCGGGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTAAATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATCGAAGT----------------------------------TAA--CTAT------AGGAAATA-AGT-------------G-T-GGCGGTGAA-------------------------------------------------------AA
droAna3 scaffold_12916:6985789-6985950 + dan-mir-1 Known_mirbase A---AAGTTTTCCAAAAA----GTGACGAAAAA------------------------AT------ATCA-----------------AGAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATA-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACTTCAAGTT----------------------------------TAA-A-TTT----CAAA--AA-ATGGT-----------------------AAGTTTT---------------------------------------------------AA
droBip1 scf7180000396566:165984-166116 + A-AACAGT--------------GAAA-----AA------------------------AT------ATC-----------------AATAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATA-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAG-T----------------------------------TTACATTC------------------------------------------------------AA--------------------------------------------AA
dp5 4_group3:7845317-7845450 - dps-mir-1 Known_mirbase C-AGGAGGGGGCTAATAAAAGTCAAA-------AG--------------------------------------AGGAAA-----TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACA-TAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACAGCG----------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:9292016-9292134 - dpe-mir-1 Known_mirbase T-AAAAGT--------------CAAA-----GACGG-----------------------------------------AA-----TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACA-TAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCG----------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004521:1845937-1846035 + dwi-mir-1 Known_mirbase C---------------------------------------------------------------------------------------TTGGCCTCTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATTAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGTCCGACATC-----------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:13613423-13613559 - dvi-mir-1 Known_mirbase T-AAGAGT--------------GTGT--------GAGTTG---------TAAT--GG--TTTTTAAAT------TGTGC-----TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTACATTCAATAGTATTCAA-ATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:24555189-24555343 + dmo-mir-1 Known_mirbase -------------------------------------------------------------------------------------------GCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATTTAT-ATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAGCATCATACCAAACTGTAAAAAAAAACACATTATGAAATTGTGTTTAAAAAAAAAATAAAA--------------ATTGA-------------------------------------------------------------------------T
droGri2 scaffold_15126:6250369-6250508 + dgr-mir-1 Known_mirbase CTTAAAGT--------------TAAG-------AGTGTGG---------T-----TT--TT--ATGGTTTTTAAATTGT-----TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAA-ATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
C-AAAAGT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AGGACCATCCCATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGT----------------------------------TGAAACTG------AAA--------------TTTAATTGAATCAGAAGTTGAACCTC---------------------------------------------------AASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2213611928.0036119287214591491441763386635642
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................231257456.0025745657163170753242327117
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211205205.002052058965594285582515440
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................231124089.001240891852982416916013984
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................21181158.008115879179956546477
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20160510.006051018302342516937264
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................22115035.0015035451690613201138
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2019669.00966996005748
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2216931.0069316591314125
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2316377.006377766286216491100
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2116177.006177935439519828
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................2415944.0059441839369719389
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2015145.00514529681002468707
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2215001.00500113452762260634
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2214007.0040076722300364671
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1913274.0032741194160851421
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2212926.0029262106582126112
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2412914.002914376206043435
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................2412756.00275661419285209
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................2112441.00244123118878315
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................2112421.002421902743449327
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1911975.00197519422328
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................2311435.001435364991179
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................2411220.0012202158758122
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................211859.00859857200
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251773.00773765763118
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231755.007554682212541
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211753.00753620852820
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191657.006573118416894
...................................................................................................................................................GAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................221653.006531274062118
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211515.00515509501
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181508.0050816612818925
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211495.004951142783865
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201483.00483263184432
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191418.0041835538916
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................221307.00307241871779
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAAT.....................................................................................................................................................................251301.0030157228115
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231274.00274224182111
....................................................................................................................................................AATGTAAAGAAGTATGGAGA.......................................................................................................................................................................201232.0023286108236
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATA.......................................................................................................................................................................231225.0022550137335
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................201216.0021699104013
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.....................................................................................................................................................................251208.0020844147215
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181206.002061712528
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................231206.00206200600
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT.......................................................................................................................................................................231171.0017142109218
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATT.....................................................................................................................................................................251170.0017022134014
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................231163.001636577417
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211145.001453088522
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACA.......................................................................................................................................................................231139.0013915109213
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................221134.001349517715
.................................................................................................................................................TGGAATGTAAAGAAGTATGGTT........................................................................................................................................................................221134.00134996722
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181131.00131130100
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................221130.001301899211
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC......................................................................................................................................................................241129.00129447519
.................................................................................................................................................TGGAATGTAAAGAAGTATGGTA........................................................................................................................................................................221120.001201482024
.................................................................................................................................................TGGAATGTAAAGAAGTATGAGA........................................................................................................................................................................221102.00102296229
..................................................................................................................................................GGAATGTAAAGAAGTATGAG.........................................................................................................................................................................20198.009897010
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACT.......................................................................................................................................................................23196.0096157407
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................18192.009277708
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................22189.0089662183
droSim2
C-AAAAGT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AAGACCATCCCATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGT----------------------------------TGAAACTG------AAA--------------TTTGATTGAAACAGAAGTTGAACCTT---------------------------------------------------AASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2211577512.00157751230973234527231410948239106153866381375289216244332383333592033791839696544324
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211131368.0013136813118437426195979747449648180144985132923705008477545636392
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCG......................................................................................................................................................................24141757.0041757000076653409100001000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23139235.0039235114301891300143716381498791309911222311329221397
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................21128968.002896806327954191291210128026330273350151
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20128533.0028533520675117296708128398113175885171665207795254142
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................23127703.00277038421654410014371386307415314942680163497732716144
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................19115832.00158320002472479120632241812398725412139105
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................1819211.009211000331523749029681763312000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2214382.004382010169500234235218901101472231421215
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2013737.00373700036376471011101272013
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2312424.002424134179165586119831741006548456403011
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2012344.0023441392522121367171156611478119016011
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2212167.002167010212900436101412006
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2211844.001844022261007277366572940667496315
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................2411239.00123925064300148461356112382021
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191869.00869102372117100120000166900000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................241808.0080800078001721481541079525227
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181747.0074786302112281200012011301000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211681.00681143006170046222201001
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................191680.00680000617124000002001206
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................221658.00658123585003025625416204
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................221514.005141327149300342164253593976118
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................221512.00512034810738501100201000
.........................................................................................................CCATGCTTCCTTGCATTCA...................................................................................................................................................................................................................191477.004770101620725300000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251361.0036100090042830124309001
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................211334.003340001230081352122830561002
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241329.00329000730035430125215000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211325.003252250217004782910436001
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241323.0032320049001717101640190000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................211296.002960002960000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................211274.00274000320054103113214010
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231252.002521471450052101817547000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231231.0023103012800757241965000
.......................................................................................................................................................GTAAAGAAGTATGGAG........................................................................................................................................................................161221.002210000000001219000100
.........................................................................................................CCATGCTTCCTTGCATTCAA..................................................................................................................................................................................................................201216.0021600054316800000000000
.................................................................................................................................................TGGAATGTAAAGAAGT..............................................................................................................................................................................161193.0019300000078813157000000
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191175.0017527113612003004001000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211172.001720001700000000001001
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.....................................................................................................................................................................251170.0017000040001600020139000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGCG......................................................................................................................................................................231133.001330000409300000000000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231123.001231001000000214519000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................221116.0011621618013619820441203
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................211114.001140004337500000200000
.................................................................................................................................................TGGAATGTAAAGAAGTA.............................................................................................................................................................................171110.00110000000111322748001305
.........................................................................................................CCATGCTTCCTTGCATTC....................................................................................................................................................................................................................181109.001090004456000000000000
........................................................................................................................................................TAAAGAAGTATGGAG........................................................................................................................................................................151108.001080000000001107000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211100.00100121814530000001101000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................22199.0099430890000101100000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................23197.00970008002060112020012
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................18193.00930001577100000000000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................23173.0073000720000000001000
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................20170.0070000550010211109000
......................................................................................................................................................TGTAAAGAAGTATGGAG........................................................................................................................................................................17159.0059000000000059000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCGAA....................................................................................................................................................................26158.00580000263200000000000
.................................................................................................................................................TGGAATGTAAAGAAG...............................................................................................................................................................................15151.00510000001711428000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGTT........................................................................................................................................................................22150.0050000100103017631000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................21144.00441410832700000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC......................................................................................................................................................................24142.00420001000101001425000
....................................................................................................................................................AATGTAAAGAAGTATGGA.........................................................................................................................................................................18139.0039213180112119000000
................................................................................................................................................ATGGAATGTAAAGAAGTATGG..........................................................................................................................................................................21139.0039100501322300418000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAAT.....................................................................................................................................................................25139.0039000700000010427000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................21138.00380001000212117113000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATT.....................................................................................................................................................................25137.0037000000000010333000
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................18137.00370102111210010000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................22134.0034201700011053112001
....................................................................................................................................................AATGTAAAGAAGTATGGAGA.......................................................................................................................................................................20133.0033150240010002000000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................22133.0033030201500010102000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT.......................................................................................................................................................................23132.0032010600032120017000
dm3
C-AAAAGT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AAGACCATCCCATATTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAGT----------------------------------TGAAACTAAAACTGAAA--------------TTTGATTGAAACAGAAGTAGAACCGT---------------------------------------------------AASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................22117533792.00175337920000179815113436810111230916487450753130173132014621670655918915105218610542128375645328824123894693925843325428046494446661603151493432224983141593020686964326611206431032390004355622040118800000000000000000030228723324411968925505281711452870622521433173103560611172465556615776254167283519041544261383959234915103252211610064192669567378285158051559669029585308916038436872112469421120042218951229701669146461581135291274024026312364622434147326369154391816519315696888469908747782741885535916629410444100011016135919336092034051549023052068419205139336182323464077911873995165067774633228945949321312126175655327476686617829421357839144767221293301382878480463605249270563221433550233578596493155327416744793310055428202230889581063986444138701724891829006445237425521476881128783490128562151729068102087294197970336138712132681296786325933954121925515819426273198973337082094143914032687620540152254329312219182103341893192017382939972550299852934899293250656551289687376822995621440685588706336339125491154373402756221363634106784183429770116305672857600128674172479818122345634168462048187092955974054114761586
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATC.....................................................................................................................................................................2515974282.005974282000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036013252372950000000000000000000001000000000000000000000000000000000000000000100000000000000000003010100000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2111148252.0011482520000131157241436553620230012130708731134016318981253084446132281036100181148165116138145507111118511818914321915048215210300027327837350000000000000000063425239161316222228050011066353334828500361994310086028841226032772441102618213120334676735314311738237309515391489186792125564831816413391281285130000162324983024968157991723629726840534813415123248223140000002119015639485041040704422109450951413282106553347738128211111200277441857713063830001109192908132248792612301738312860190006494946270435324165485984742504241426789289766612000480430001824110726831554215002983303253071775341000136650002141710052012030122308037692330833072774014971131806422271311313734172932182831822535938750253424139933341010241156646815219029823831026391353792752610999611510272131815655173267448740210423308654090447343111003
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAATC......................................................................................................................................................................241797614.007976140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443910353704000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................231611558.006115580000593802148170270300040618370009000000005919321043152617109231451846164421951117000000000000000000000007837278136552101280778582135510871737138816625753347121872271066142139510329197032447542552873456314176327619784684000000000020204413018074654410190168937584228000003000413110116070127410246114674310715318371520341870220087013036210873002110651275161027011701700000010671863350810931288125232761039152876112370001683744678700237113034602392742019746530086297600012327200000023000000002571895478293230324641711296012036880954279269892591960717941461913136911092321562821961837225314472968413567517823074254004310640715183955247901162891620636241293181200000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................231603940.00603940000011557151419381230110032012287940024200000004628552643342844200391774483358552200533100000000000000000000000101177632339486290190135026413504432023117501383320851177961061921392121854714727834817258151541437253944816200225732819333054965334365010013114095811851452919321917427621442307010111188000004250054667810690110811430712782596832119414185729450120006593716573819330455241637404184231792251118000000381331721111788206018692271617814501966143918880000222914910091649221838216973301875142160524831000128260001104400311030546399095759378456835346270401209274416051891982335228218842024813131111031215184628153350262999426497844763211510116361965644104310152252250527883411840577142142117335338271443902200
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC......................................................................................................................................................................241365031.00365031000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000200031300001000000010000005000010302011000000000000000000002000000000000000030100110101023000003000000000000000000000000000000144283024000021886214578300000000000540200000000000000000000017211112000007210713230180112110191700300000000000007121411171217000000
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.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................2215480.00548000008812019342030000000000000022980174101200000000100000110000010748460000000000000000001011426314342838182001040374210057108436361688911422410420532326018096216712116014113391125161001000000010757000000600000000000000062630876424885183241156837000003101100000000000000000000000080014017995338471121331620000000078000000030030000000000000000000000000000000002000018800000000000000000000000000000001000000000
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.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCATC....................................................................................................................................................................2614496.004496000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024572039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................1814481.004481000000000000000001002314000210000001120120100012310020001000000000000000000030010400100030840014842631100000002000040710001030302200000000001510120058617106190140000000600007100161214122612011000000819114000603000000000000000001510142118001100000000000025301140000201040000029000000000000000221273223316170000161568317611448232421504983119109119036900522360000000000090251213510988520000018
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.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................2313264.003264000030000010100000000010000000000000100000001000001000000000000000000000000000000000000000621000310001222900200030000801102021703063000000000000000111112000000000000000092101000490603402100000044100000003000000040000000001527151513461016233000040180000019520002418090000030000000000000006297534302700001231137351427220259355384010712800151020000000000008733631955442112107000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCTC.....................................................................................................................................................................2513225.003225000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019191306000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCG......................................................................................................................................................................2412728.00272800000000000000000000000000000000000000000010000000000000127339310440000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200140010000000000000000000101000000000000000000000000000000000000000200000000001000000000000000001100000000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2112636.00263600000000000000000000005000000000000000010120110001010000000000000000000000000000000010000001008170002020000100000000000200130513500000000000000001100170030000000000001023010820122042122052300000100241001050000000001000000019172110000020000000002011700002223060000014000000000000000221624526150000088669910528463920163013085401029300512150010001000022841022261100132136000000
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.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................2112310.00231000002207001000000000011000000000004000010010010121011000000000000000000000000000020500004453105411006402000001000001400203021140000000000000004120113011680020000002000008607001413290801711300004006300011100000010000000000341616441761463110000000096043000046602000000380000000000000002531051024000023036244940161814809612241220115143005240000000001011479190616512376000000
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.................................................................................................................................................TGGAATGTAAAGAAGTATGGCT........................................................................................................................................................................2212196.002196000000000000000000000000000000000001000012000000100010000000000000000000000000000100300020100010100100000000000000013202010803512827000000000021200010026600010000000000010200190002010102300000100000000000000000000000000001360000000100000000115054101000294410570000030000000100000000024122039190000113919833216525314001711317111250106141001000000000000013263246000000
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.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.....................................................................................................................................................................2511712.00171200000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010200240025000000000000000100000000101100000000000000000000000000000000000003000004020002000000200000000010000000000000000001004731172530000789479000002000004803000000000000000000000053602040000080159122501721419086001122000000000007649261183321000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAC.....................................................................................................................................................................2511561.0015610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000970549000000000000100000001000000000000000000100010000010100000020010302300110000000000007451102000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................2211512.00151200000000000000000000010000000000000000000000000000000000000000000000000000000100000010001152007570014020000100000113121010101107140000000000000000020019000000000000000612019231611229648228800000200220001070000002100000000026830001000000000000110111000011100400000500000000000000003250201000015347865910213110603139509657001206000000000107010217153607260000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2211441.001441000000000000000000000000000000000000000000000000000000000000000000000000000001000001400000220010300000000000000000300101000200020000000000000000111021500000000000000044071790824053103700000001311200103000000020000000000682000200000000000033020000040010000030000000000000000021011002000001933383318281790610046033260046150010010003012527623136658767000000
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2011439.00143900000000010000000000000000010132530180000001101000000000002451700000000000000000000001010000020222055800280200000110010001250601032302422015000000000100000013101700000000000000045590380115691350560136400000350000000010700000000000000000223813916320000120001040000092040000020000000000000002324100120600000811131941729250220101150526000575000000000003623305183425000000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2211427.001427000000000000000000001010000000000010000100000000000000000000000000000000000000000005000051210044400112210000000000020340204512013276000000000000000000001000000000000000172701710102631904804640000021001100000100000000000000000003012102311000019710300000110000540200000300000000000000001022404000001710242031418903225041704056001951200000000000127757623285049000000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2211395.0013950000030000000000000000000100000000101000000000000011000011100000000000000000020023050000121204401012351014292220000337230031001020002000000000000000001000122122000000000000000150500050005010000000003000010700000040000000000277433532012300002100100210000252050000000000001000000003212183362900001152514262914269460613176201121050033120010000001029135117303623000000
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................2111354.0013540000050673102000000000000002122831110100000010010000000000017190000000000000000043132794516110713008821201019621098317126114001217391573203405100010003060000000000078110100001400000000000000011220133231230313512142200000500100000000000000000000000003003169234736000000000200000001102000000000000000000000000000000000000004300000000000000000000000000000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................2511247.0012470000000000000000000000100000000000000000010000000000000000000000000000000000000002000000104010136000011000010100000000000001901010000000000000000000013000000000000000110700030305070000002100000000500000001000000000071112106155144500008700200450000162403000008000000000000000210510114312000001452153517100251629270497200238100000000000015422410126336335000000
droEre2
C-AAAACA--CCGAAACC----TAGC-------CG-----------------------------AAACA----AGGACC--------TCCAGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGA--------------------------------------AAATTA------AAA--------------TGT----------------------------AA--------------------------------------------AGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2214204467.00420446714518867024510558119238212790021105055316
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211258677.0025867713324226215003148792077242470
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................211158970.0015897015716626921327168353
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................231124373.0012437335519361020571735622021922822
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23158023.0058023246055677603482509866405
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20152952.0052952242594724631192062770120
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................20114046.00140461396105262160
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2219945.009945470965166148378910680
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2219199.0091991747162351519105146256
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2018743.008743661217458711088740
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2214747.0047479022170691986597481
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2214722.00472239323916126121110
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2313292.0032927205101002247649731
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................2113228.0032281593712219306650
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2212806.00280627501024940
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1912663.00266310976361512252840
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1912416.00241623801013040
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2111942.001942527324211482380
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................2411749.001749751102108371300
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2111670.0016701660001450
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2411589.001589484261297942640
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2111274.00127428691287821770
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................2111129.001129911887864510
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................2311096.0010967941958851823
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................1911093.00109354946242112990
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181803.0080323367222982352
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................221790.007909611314332460
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191678.00678534001114290
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241646.006462254122316861
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231601.00601305260252360
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231591.0059151232034382
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211568.00568567000100
...................................................................................................................................................GAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................221471.0047198060304630
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................221427.00427430452471280
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................211408.004081203224195640
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251361.0036194110205600
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241231.0023180111124240
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201207.002071615003380
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................231207.0020710607545440
..................................................................................................................................................GGAATGTAAAGAAGTATGAG.........................................................................................................................................................................201206.00206206000000
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................181200.002009000086240
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................221163.001635914573210
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181157.0015711103022210
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................221150.00150895604010
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................201145.0014571024223511
..................................................................................................................................................GGAATGTAAAGAAGTATGGAC........................................................................................................................................................................211127.00127126100000
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181102.00102101000100
droYak3
C-AAAACT--------------TAGC-------CGCGTTG---------TGGA--AA--ATCCAAAACA----AAGAACATCCCACCATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAC-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCGGAGT----------------------------------TGAAAGTA------AAA--GA-AAAGAGCA-TTTGATTGAATCGCCAATTGAACAAT----TAATAAGCCCCTATATTTCTGGGCATACATATGTACATAA-------AASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2212707444.0027074441091091127504930305630287101305746366171204116835770
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211197551.00197551310897423469177314607456532261101310634
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................211127313.001273130126500195208107531130110
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................231105095.0010509542389439743334457025863462245523250
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23135158.00351580142415218638236109413648160670
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20129045.002904501464132387312465495275247320
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................22121762.002176247142027178151675110020
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................20112064.00120640120225005310010
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2319627.00962704898251386201253540020
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2216647.006647240365121005220817280081
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2014732.004732324283143978371320000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2213462.0034620276653923271230020
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2212963.00296301491255174653396277050
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2211651.0016510161524000120000
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1911544.00154401534300160000
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1911531.00153108013981568555001332
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2411250.0012500345266306405561042
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211898.008980677685311391040
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231725.00725041219911111910000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231692.006920594352402351010
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241654.0065403302823262630020
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................211634.0063407595312104180030
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181490.004901636240529560000
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................221458.004580273173110010000
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191457.004572236616704420000
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191405.0040513822104150000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211366.003660364000020000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................211346.003460892543461751012
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231344.003440205803151130000
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................201336.00336014300313000303
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241311.0031101273332131330000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................221280.00280811370918671030
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211221.00221510959321420000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................221169.0016905610640210000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211160.0016009423425320000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241125.0012504613003590013
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211120.00120025191147260010
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181118.0011808621314100011
.................................................................................................................................................TGGAATGTAAAGAAGTATC...........................................................................................................................................................................191114.001140411000000000
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................211110.001100693630020000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................221110.0011001820103680000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................23198.0098040253010200000
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................18187.0087087000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................25282.0016404024108910000
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................20179.007902023012310011
droEug1
T-AAAAGT--------------TAAC-------CGC-TCGCGGGTGAAGGAAA-AAAATATGAAAAACA----AAGAACT-----TTATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAG-AAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAAGT----------------------------------TGAAAATA------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
C-AAAAGTTAAC-------------C-------CGCGAGA---------TAT------------AAACA----GGGAGCA-----GAATCGGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTAT-TCAAGCCTATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTTACATCAGTGT----------------------------------TCCAAAAA----------------GATACATATTGC----T-T-ACCAGTGATT----ATTTT------------------------------ATTCATAAAAAACATACSizeHit CountTotal NormTotal
No Reads
droTak1
T-AAAAGT--------------TAAC-------CGG-CGGAGAATTTGGTGGA-GAAATACACAAAACA----AGAAACA-----TAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAAACATCGAAGA----------------------------------TAT----------CAAA--AA----------------------------TGATTT-TAATTTTA--------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEle1
T-AAAAGT--------------TAAC-------CGGGGGG---------TGAA--AA--AAGGAAACGA----AATAACA-----TAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTGACATCGAAGT----------------------------------AGA--GTG------AAAACATAA-AGA-------------A-C-GAAAGTGAATGTC---------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droRho1
T-AAAAGT--------------TAAA-------CGGGTGG--------GTGAAAAAA--ATG-AAAACA---AAAGAACA-----TTATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATCGCAGC----------------------------------TAA--GTGT----AAAA--TA-A-GGA-------------A-T-GGAAGTGA----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A---AAGT--------------TGAA-------CGGGTCG--------CTGGA--AA--AT--AAAACA---AAGAAACG-----TAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAACTCATCGAAT------------------------------------AAAAGTG---------------------------ATTTAACCAGTAA------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droKik1
T-AAAAGT--------------TAGC-------TGG-CAG---------CGGA--AA--AT--AAACCAGTGAAATAA---CCCATTCGGGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTAAATAT-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATCGAAGT----------------------------------TAA--CTAT------AGGAAATA-AGT-------------G-T-GGCGGTGAA-------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droAna3
A---AAGTTTTCCAAAAA----GTGACGAAAAA------------------------AT------ATCA-----------------AGAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATA-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACTTCAAGTT----------------------------------TAA-A-TTT----CAAA--AA-ATGGT-----------------------AAGTTTT---------------------------------------------------AASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2211706439.0017064393059483460518607162577556127628575
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211148875.00148875307482346368114137967724323
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................23151950.00519506762154619136122895410885
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20143071.00430718483456381807264825805
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................21136245.003624535241101596342541
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23118418.00184183638335541135102972959
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................22117948.001794856519193375672810068
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2214369.004369113547273522144664
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2013523.00352334411175320
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2213124.003124273156425324567371
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2012259.0022591582171552218375
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1911591.00159134482117995125
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................2111173.001173522090880149
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2411092.00109221920379552219
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................231979.0097910828411159203214
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................221956.00956782100511742
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................191953.00953916102331
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211509.0050914234139752
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211469.00469194912631460
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................221444.00444433000101
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................212443.008861795318342339
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241425.0042596502424852
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191324.003241585121427108
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181310.00310145810216165
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251269.0026960203113343
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191241.002411632345019
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................221228.00228197272002
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231207.00207118102142637
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231198.0019848201411519
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................202177.003541520626368
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241174.001744630138230
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231149.0014911921999
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................231135.00135222076935
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241121.00121250067713
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211119.00119402025124
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201113.001132690115512
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211111.00111361024428
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................221100.00100145126711
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................21195.00958800034
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................18194.009447512786
.................................................................................................................................................TGGAATGTAAAGAAGTATGGTT........................................................................................................................................................................22184.0084500204613
.................................................................................................................................................TGGAATGTAAAGAAGTATGGCT........................................................................................................................................................................22277.50155005695526
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT.......................................................................................................................................................................23175.007520004492
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATA.......................................................................................................................................................................23168.006812017417
droBip1
A-AACAGT--------------GAAA-----AA------------------------AT------ATC-----------------AATAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATA-TCAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAG-T----------------------------------TTACATTC------------------------------------------------------AA--------------------------------------------AASizeHit CountTotal NormTotal
No Reads
dp5
C-AGGAGGGGGCTAATAAAAGTCAAA-------AG--------------------------------------AGGAAA-----TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACA-TAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACAGCG----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2213337846.00333784623171829879002725102462183888995579129765175452101881
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211426786.0042678602628073506678221751767366063140492573327998
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................211168799.0016879901674302257145266375183107214
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................201119464.001194640828566291168196258023264185440192898
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................231105684.00105684146082381945662008476135847273931322729
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23132261.003226111911079382746110838369601565451
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................20125785.0025785025574150861235360
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................22116851.001685113682690730792048191191167161640
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................19112156.0012156093272514273071960124229143
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2219115.0091150599794132121361202310722951
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1918311.00831108280100117183
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2016881.006881176319283894141240112
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2214384.00438404289954550679
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2413623.003623120228197211061159465634
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2313115.0031150528829637349262309496785
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2212138.00213808272436287283482637264
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2211862.0018620185021116100
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................2111817.0018170755916795839274425
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191994.009940939124738120
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181938.00938093600000200
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251806.0080604778123162691245
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191760.007601565266201546000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241747.00747045892131520812174
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231706.0070606543312149461
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231704.0070405982313181318696
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181700.0070076077891051100
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211611.006110148246981326613124
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................211593.00593012461419543501565
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211543.00543054200001000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231514.00514035416012131271
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211431.0043112771139139000
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................201427.004270319131787504
..................................................................................................................................................GGAATGTAAAGAAGTATGGAC........................................................................................................................................................................211415.00415040723000300
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241415.00415021645261479188
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................181332.00332032700212000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211326.003264229934473000
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181321.00321024941123951316
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................221308.003080128150131601000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211217.002170867245553235
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................231206.00206020600000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201174.001740117630733341
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................221173.001730122555721233
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241158.00158083520360212
.................................................................................................................................................TGGAATGTAAAGAAGTATGGTT........................................................................................................................................................................221152.00152079309251323
...................................................................................................................................................GAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................221144.00144064150173000
....................................................................................................................................................AATGTAAAGAAGTATGGA.........................................................................................................................................................................181111.00111010900011000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACT.......................................................................................................................................................................23185.0085052540218022
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................21179.007907700001001
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................21179.0079049232410000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGCT........................................................................................................................................................................22177.0077000026483000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................23175.0075042141221031
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................22171.007106234200000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACA.......................................................................................................................................................................23166.006605004019011
..................................................................................................................................................GGAATGTAAAGAAGTATGGT.........................................................................................................................................................................20162.006205800002020
droPer2
T-AAAAGT--------------CAAA-----GACGG-----------------------------------------AA-----TCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACA-TAAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCG----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2212788939.00278893953517316416811302722339961865621
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211331653.00331653074607611951219511227412
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................23186832.00868320100543251731535769365
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................21163101.0063101061507361161611281
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20146834.004683401144144846186532638
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23131022.003102204112109534163024637
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2219040.009040016856343612615595
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2018865.00886508587057266
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2217740.00774001648261624095495
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1914344.00434401092101192392884
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2213929.0039290835291003702595
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2013230.0032301920022365681053
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2412175.00217502793381421713
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2312053.002053017660932091515
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2211388.00138801118186255
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1911383.0013830131003268
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................2111269.001269031631131908
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................2111163.001163075321112952
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241613.006130660634507
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191604.006040283039309
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................221531.00531049400037
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211474.004740451315410
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211379.00379440144326
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251369.003690450419301
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231339.003390481114275
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181334.003341914081110146
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191292.002921116011201674
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231278.00278020430863
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241263.002630400720196
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211256.0025602511243175
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231208.00208016801930
...................................................................................................................................................GAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................221203.0020306003194
..................................................................................................................................................GGAATGTAAAGAAGTATGGAC........................................................................................................................................................................211181.0018101741105
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................201170.001700350312120
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211166.001660120258643
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181161.001610850103729
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241159.00159018007134
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201140.0014005206280
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181137.0013701330004
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211137.0013701360001
.................................................................................................................................................TGGAATGTAAAGAAGTATGGCT........................................................................................................................................................................221135.00135002138931
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................22190.00900401184
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................22187.008712603651
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACT.......................................................................................................................................................................23176.007601511752
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................23174.007401801946
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................18174.007405001221
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................22165.00650101162
droWil2
C---------------------------------------------------------------------------------------TTGGCCTCTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATTAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGTCCGACATC-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2213227179.0032271793285977923853151316126927618
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211153590.001535902190066400861033113086
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................21171727.0071727169819169854884
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................23150379.00503797121721885294189930
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20135884.0035884120699935913744451
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23121234.002123438155794323302803
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2019845.009845098082584
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2217528.0075280271817815642465
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2217329.007329171195109513063716
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2213816.00381613982322437748
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2013748.003748169256872312627
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1912544.00254401400772122250
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1912487.00248702476704
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2311853.0018530194155705799
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................2111796.0017960359254756427
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2211530.00153001432293237
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191988.009889537127121374
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................221980.009800976301
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181860.008605540960126210
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................241511.00511016716943132
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191440.0044034109711
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231391.003911294373227
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................211357.003570104164584
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231339.00339023696232
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241337.0033701801241122
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211307.003070302005
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231293.00293017488427
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241207.00207096641334
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181160.001600160000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211159.00159257343531
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................221147.0014721230184
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181144.001440129564
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................221143.00143270203516
..................................................................................................................................................GGAATGTAAAGAAGTATGGAC........................................................................................................................................................................211130.001300127021
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211124.00124583131310
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201119.0011908127110
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211113.0011303442928
...............................................................................................................................GTATATTAAATAAGCATA..............................................................................................................................................................................................181107.001070001052
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................18186.0086083111
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................21186.008605751014
....................................................................................................................................................AATGTAAAGAAGTATGGA.........................................................................................................................................................................18168.0068256226
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................25161.006102623210
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACT.......................................................................................................................................................................23160.006012124410
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................20157.00570371343
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACA.......................................................................................................................................................................23153.005302412017
..................................................................................................................................................GGAATGTAAAGAAGTATGAG.........................................................................................................................................................................20150.0050050000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT.......................................................................................................................................................................23149.00490811624
................................................................................................................................................ATGGAATGTAAAGAAGTATGG..........................................................................................................................................................................21145.00450231228
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................24144.004401912310
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................22143.0043043000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................21143.0043039130
...............................................................................................................................................TATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................24129.00291111124
.................................................................................................................................................TGGAATGTAAAGAAGTAG............................................................................................................................................................................18128.0028013582
....................................................................................................................................................AATGTAAAGAAGTATGGAGT.......................................................................................................................................................................20127.0027212526
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................22127.00270412011
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................23126.0026026000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................23125.0025025000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................22124.0024117123
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................21124.0024019050
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................23123.002308762
.....................................................................................................................................................ATGTAAAGAAGTATGGAGT.......................................................................................................................................................................19123.0023214106
droVir3
T-AAGAGT--------------GTGT--------GAGTTG---------TAAT--GG--TTTTTAAAT------TGTGC-----TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTACATTCAATAGTATTCAA-ATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2214790478.0047904781151381101385431853685211856375505511944467208166010810252560822939810848937146619862914174312155150111259490389540584449855256793735442513146354044252111301112132952181104154631223252418134114111225198408481292449347912672153527251543043252947443520200214738407871483112321151379208719836073128603
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211347794.0034779435959811716313143952513545793809604000337031764991372304519905116369321427120890482416435903596516653341579411527835461175117625223341281020916136254323199840201384433409913657664122702020542548706932
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................211125188.001251882012204916311326635110105031931093982891608184285256463951144905000014000000000000000000010421737800100100100002312
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................231113985.0011398512130091632735259889438923532860011457557402589104784986513630538748005899614824813712481191532131513532017325252497617121728649512791112862772074446408723300250211592532423600302038388346324375
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23166931.0066931301425036327149152878473077000601627611181437619872352811885378519494579474355091734670112120111195010101352312155811121066523112457206292981814110000005161183157205
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20148394.004839400180242648635297585143104110700014285401251047627980104917948498661811968248491025020002133700000000011330174303639376417649013481189000000111797163159
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................22117196.00171960038964515532275282092600015096994351077669502465951049132315421823929274218042000044001000000000001011123998804141010311100000021391928
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................20110473.001047300102260030200100036211430281631121010029607010001120000000000000000000081900001000000000111
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2218847.008847004661652445220749000326795520813275658913983775464416331190000060000000000000201224869509540400000200000008326
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1916532.00653200128432381272918528000635372200472313241431792692814612117610125690560000475000000000010000115144281314243127000000014396
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2015466.005466443041831241456423400018264531287947125288201717298260130010213000000000000000200053101125002000610947300000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2214480.0044802112551317272285248000297104351088742256122514342108817080000070010001002120103443136546104200210200000012171
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2413762.00376200324575914021851500052317695350146256912435613713114947215401000112190113223247111431115221521421957644021020000000017235
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2313143.0031430041727517343523100003791706128310715578926400343244782506000108000100210114231422913120932902001100000014301
.................................................................................................................................................TGGAATGTAAAGAAGTA.............................................................................................................................................................................1712264.002264000000000000000000000000000000000000000048101533826306051130846576458281676557010000679000000557423858
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................1811995.00199500176007562000013492071342971621541112917824321301917251160010090000000000000001010029900211000000001020
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1911989.00198900197100000000000000000002000000011000000000000000000000000000031100000000000000000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2211619.00161900157200000000000521313039000000010000000000000000000000000000011700000000000000010
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................2511592.001592001249220411730002367435160811433751600313285818020000130201022026410594178203131226400000000200000212
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................1811578.00157832185234142869100015391101152779586167223125114503000001000000000000000130012236800000062205301000
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2211543.00154300140830002210000228101616111812000001304000000000000000000000000000041100000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................2411528.001528103018320308000018496331044898042128001217831001000000000000001010000213004935900000000000005546
.........................................................................................................CCATGCTTCCTTACATTCAATA................................................................................................................................................................................................................2211421.00142123424310100110000001344940429130416085032566225123083511131009000631354319271688920516119063110111105321100
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................1911226.001226383846733903541000966070854331142848310218275905000005000000000000000220020243800010084415401000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................2311102.00110200239003011112000884219692642332710002023280802000006000000000000000000103334600000000000000031
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241959.0095900184620611810009740216732440375500012644300000003000000000010000112022030200000100000000013
.........................................................................................................CCATGCTTCCTTACATTCAAT.................................................................................................................................................................................................................211918.00918411273300100000001173629569632318778122132013625020511200000003100312120000202001510000000001000
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................211883.0088300764020858300039221145162702019001114525010000010000000000000000100284648200000000000000000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231822.0082200688201001300002112783110227000000203020000000000000000110000000761300000000000001000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................211689.006890080337218619200025497922410816010215813000000030000000000000000000210326801000000000001000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231516.0051601325100202181000852411131000121042302000002000000001000000004112197200000000000002210
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211437.00437004290000000000010001200100000001000000000000000000000000000001100000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................241410.0041000830020206000034167191015191801011560300010000000000000001100001121214900000000000000012
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191402.00402203281100101000085664202900000061103000002000000000000000010004700000000100000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................211393.00393001920454013000214251513115221522001310204000014000000000000000000021463800000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211287.002872258520241309100091623543282000012350100000000000000000002000420313900000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................231259.00259001200000062000232018453240000012100300000000000000000000000122815600000000010000100
.................................................................................................................................................TGGAATGTAAAGAAGTATGGCT........................................................................................................................................................................221256.00256001001020100000203102300000000000010000000000000000000000000281811200000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATA.......................................................................................................................................................................231198.001980014000000100003123120250000000020100000100000000000000000004415200000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGT..........................................................................................................................................................................201153.001530018101000100001203121321000022000000000000000000000000000002721820000000000000000
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181151.00151001490000000000000000000000000000000000000000000000000000000001100000000000000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211143.0014310602010101000011216101147000002122020000010000000000000000010151600000000000000100
.................................................................................................................................................TGGAATGTAAAGAAGTATGGCC........................................................................................................................................................................221133.00133000000000000001100014310000000000000000000000000000000000000380300000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................201130.001300029202001100007514310200000002010000000100000000000000000201164900000000000000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211109.00109006510001000000531201043000000001000000000000000000000000000071500000000000000000
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................221106.0010600101100007000016558430516001003104000000000000000000000001000001500000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATT...........................................................................................................................................................................191106.00106002700601170000631422215011102112000000100000000000000000010062100000000000000000
.........................................................................................................CCATGCTTCCTTACATTCAA..................................................................................................................................................................................................................201103.00103101510000000000122221160191100001454400000000000000000010000000000000200000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT.......................................................................................................................................................................231101.0010100710000220000610545012000002213000000010000010000100000001134800000000000000100
....................................................................................................................................................AATGTAAAGAAGTATGGA.........................................................................................................................................................................181101.001010037002020200001105933041000000140003000002000000000000000000003000000000000000000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.....................................................................................................................................................................25197.00970026000000200007448104012000000011000000000000000000000000000012600000000000000000
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................22191.009100451000000000054341003510010100100000000000000000000000000115900000000000000000
droMoj3
-------------------------------------------------------------------------------------------GCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATTTAT-ATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAGCATCATACCAAACTGTAAAAAAAAACACATTATGAAATTGTGTTTAAAAAAAAAATAAAA--------------ATTGA-------------------------------------------------------------------------TSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2213195614.003195614174696725355552587139201205106798198
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................211247608.0024760818066337431789100489649397
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................211197023.001970231961151763180144477
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................23176793.007679325860272873021241316832183
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................20135553.003555321219303761121146711340
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................23135444.0035444171285473481122236813931
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................20119795.001979519750023733
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2219758.009758567140481858266552
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2016719.0067196204691336108289
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................2216510.0065103810811123251572025
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................1914908.0049082980270194531609
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................2313648.003648462291231022494276
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2213001.003001281561754118
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................1912175.0021752162001012
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2212120.002120791179144159100747
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2211995.0019951977000513
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................2211535.001535501141110171
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................2411203.00120328354526402433
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231809.00809773754137
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231788.007886658156841
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................211758.007581651472344505
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................191605.00605569001134
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191591.005915077261950
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181591.0059143092730113
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................211575.00575783101443139
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241538.005383050122018183
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................211405.0040540500000
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................231305.0030516705151117
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241300.00300101211315168
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................181296.0029629500001
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................211266.002661135001480
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................211265.0026563273221140
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................181260.002602100825413
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................251195.001955623617111
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................211155.001551021012130
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................211136.0013667322656
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................221105.001059200247
..........................................................................................................CATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................21198.009844200520
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................24194.0094431231035
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................21185.008544091967
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................18182.00827500016
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................20178.0078330081819
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................21176.00767500001
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................22170.007053000161
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................22169.00696900000
.................................................................................................................................................TGGAATGTAAAGAAGTATC...........................................................................................................................................................................19167.00673000640
...................................................................................................................................................GAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................22166.00668000850
....................................................................................................................................................AATGTAAAGAAGTATGGA.........................................................................................................................................................................18164.00645600215
droGri2
CTTAAAGT--------------TAAG-------AGTGTGG---------T-----TT--TT--ATGGTTTTTAAATTGT-----TTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAA-ATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................2211015272.001015272645154370118
..................................................................................................................................................GGAATGTAAAGAAGTATGGAG........................................................................................................................................................................21172469.007246972314155
.................................................................................................................................................TGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................21142096.00420962451617580
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................23118497.0018497800910488
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................2315980.00598030492931
.................................................................................................................................................TGGAATGTAAAGAAGTATGG..........................................................................................................................................................................2013777.00377718481929
..................................................................................................................................................GGAATGTAAAGAAGTATGGA.........................................................................................................................................................................2012789.00278927845
...................................................................................................................................................GAATGTAAAGAAGTATGGAG........................................................................................................................................................................2012129.002129208346
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAC........................................................................................................................................................................2211437.001437597840
.........................................................................................................CCATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................2211381.00138113765
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAT........................................................................................................................................................................2211049.001049384665
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................221955.0095594510
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAA........................................................................................................................................................................221909.00909409500
.................................................................................................................................................TGGAATGTAAAGAAGTATG...........................................................................................................................................................................191737.00737615122
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................241547.00547223324
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................231470.00470289181
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................231435.0043537857
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................221347.003473452
................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................231346.003463415
.........................................................................................................CCATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................211332.003323293
.................................................................................................................................................TGGAATGTAAAGAAGTATGAG.........................................................................................................................................................................211302.0030226276
.....................................................................................................................................................ATGTAAAGAAGTATGGAG........................................................................................................................................................................181222.0022217448
..................................................................................................................................................GGAATGTAAAGAAGTATGG..........................................................................................................................................................................191192.001921911
....................................................................................................................................................AATGTAAAGAAGTATGGAG........................................................................................................................................................................191180.001801728
..........................................................................................................CATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................211165.001651650
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA......................................................................................................................................................................241103.001034360
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA......................................................................................................................................................................241101.001017922
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.....................................................................................................................................................................25193.00932865
.................................................................................................................................................TGGAATGTAAAGAAGTAT............................................................................................................................................................................18183.0083794
...................................................................................................................................................GAATGTAAAGAAGTATGGA.........................................................................................................................................................................19181.0081774
..................................................................................................................................................GGAATGTAAAGAAGTATG...........................................................................................................................................................................18180.0080791
.........................................................................................................CCATGCTTCCTTGCATTCA...................................................................................................................................................................................................................19157.0057570
..................................................................................................................................................GGAATGTAAAGAAGTATGGAA........................................................................................................................................................................21157.0057561
.........................................................................................................CCATGCTTCCTTGCATTCAA..................................................................................................................................................................................................................20156.0056560
..................................................................................................................................................GGAATGTAAAGAAGTATGGAC........................................................................................................................................................................21154.0054540
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA.......................................................................................................................................................................23152.00522329
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGG.......................................................................................................................................................................22150.0050500
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT......................................................................................................................................................................24148.00482325
..................................................................................................................................................GGAATGTAAAGAAGTATGGAT........................................................................................................................................................................21142.0042411
.................................................................................................................................................TGGAATGTAAAGAAGTATGGC.........................................................................................................................................................................21136.00361224
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGGC......................................................................................................................................................................24136.0036360
..........................................................................................................CATGCTTCCTTGCATTCAAT.................................................................................................................................................................................................................20135.0035350
...................................................................................................................................................GAATGTAAAGAAGTATGGAGT.......................................................................................................................................................................21133.0033303
.................................................................................................................................................TGGAATGTAAAGAAGTATGGG.........................................................................................................................................................................21131.00311417
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTC......................................................................................................................................................................24126.0026224
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGC.......................................................................................................................................................................22125.0025250
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACT.......................................................................................................................................................................23124.0024717
...................................................................................................................................................GAATGTAAAGAAGTATGGAGA.......................................................................................................................................................................21123.0023194
...........................................................................................................ATGCTTCCTTGCATTCAATA................................................................................................................................................................................................................20123.0023230
..................................................................................................................................................GGAATGTAAAGAAGTATGGAGTT......................................................................................................................................................................23120.0020191
.................................................................................................................................................TGGAATGTAAAGAAGTATGGATT.......................................................................................................................................................................23120.0020713
................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.........................................................................................................................................................................22119.0019154
.................................................................................................................................................TGGAATGTAAAGAAGTATGGT.........................................................................................................................................................................21119.0019613
.................................................................................................................................................TGGAATGTAAAGAAGTATGGTT........................................................................................................................................................................22117.0017116
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCA......................................................................................................................................................................24116.0016160
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC......................................................................................................................................................................24114.0014140
.................................................................................................................................................TGGAATGTAAAGAAGTATGGACA.......................................................................................................................................................................23114.001468
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCT......................................................................................................................................................................24112.001275
....................................................................................................................................................AATGTAAAGAAGTATGGA.........................................................................................................................................................................18112.0012120
.................................................................................................................................................TGGAATGTAAAGAAGTATGA..........................................................................................................................................................................20112.001239
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT.......................................................................................................................................................................23112.001248
...............................................................................................................................................TATGGAATGTAAAGAAGTATGGAG........................................................................................................................................................................24112.0012120
.....................................................................................................................................................ATGTAAAGAAGTATGGAGT.......................................................................................................................................................................19110.001091
...................................................................................................................................................GAATGTAAAGAAGTATGG..........................................................................................................................................................................18110.0010100
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGGT......................................................................................................................................................................24110.0010100
.........................................................................................................CCATGCTTCCTTGCATTCAATT................................................................................................................................................................................................................22110.0010100
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTG.....................................................................................................................................................................2519.00990
....................................................................................................................................................AATGTAAAGAAGTATGGAGT.......................................................................................................................................................................2019.00981
.........................................................................................................CCATGCTTCCTTGCATTCAATAA...............................................................................................................................................................................................................2319.00990
.................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATG.....................................................................................................................................................................2518.00880

Generated: 10/20/2015 at 07:37 PM