ID:

dpe_996

 Coordinate:

scaffold_2:1212155-1212305 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.8 -27.8

Flybase annnotation

exon [dper_GLEANR_11089:6]; CDS [Dper\GL10966-cds]; intron [Dper\GL10966-in]

Repeatable elements

NameClassFamilyStrand
BilboLINELOA-
mature
  1. dpe_996  scaffold_2:1212160-1212182 -
  2. scaffold_30:400873-400895 +
  3. scaffold_30:405055-405077 +
  4. scaffold_30:409883-409905 +
  5. scaffold_30:414086-414108 +
  6. scaffold_96:104667-104689 +
  7. scaffold_7588:405-427 -
  8. scaffold_10408:804-826 -
star
  1. scaffold_167:40124-40145 +
  2. scaffold_158:5172-5193 +
  3. scaffold_0:3317558-3317579 -
  4. dpe_996  scaffold_2:1212258-1212279 -
  5. scaffold_16:1137884-1137905 -
  6. scaffold_30:400776-400797 +
  7. scaffold_30:404958-404979 +
  8. scaffold_30:409786-409807 +
  9. scaffold_30:413989-414010 +
  10. scaffold_11221:279-300 +
  11. scaffold_571:8390-8411 -
  12. scaffold_571:14477-14498 -
  13. scaffold_7588:503-524 -
  14. scaffold_10408:902-923 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################--
TGCCGTAGTTGCAGAGACGAGGAGGAGACAGAACATCTGTTCTGCTCCTGTCCAGCTTTCAGAAGAAGAAAGGCTACAACACTTAGGCTCTGCCTTTCTAACCGACATGTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTGGCTGGAACAACTGCTGACATGAAGTCTCACTTTGCAGGAAAGGAATGATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAAT
****************************************************************************........((((...))))......((((....))))..(((((..((...(((.((((..((((.(((...........)))))))..)))).)))..))..)))))............******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 M021
embryo
 V057
head
 V042
embryo
...................................TCTGTTCTGCTCCTGTCCAG.................................................................................................................................................................................................... 20 0 4 1.75 7 3 4 0 0
...........................................................CAGAAGAAGAAAGGCAACTA............................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................TGCAGGAAAGGAATGATCCCAAG................................ 23 0 2 0.50 1 1 0 0 0
...................................TCTGTTCTGCTCCTGTCCAGC................................................................................................................................................................................................... 21 0 4 0.50 2 2 0 0 0
...................................TCTGTTCTGCTCCTGTCCAGT................................................................................................................................................................................................... 21 1 5 0.40 2 2 0 0 0
..............................................................................................................................................GCTAACTTTCTCACAGCATCT........................................................................................ 21 3 3 0.33 1 0 0 1 0
.................................CATCTGTTCTGCTCCTGTCCAGCA.................................................................................................................................................................................................. 24 1 4 0.25 1 1 0 0 0
...................................TCTGTTCTGCTCCTGTCCAGCTAAAA.............................................................................................................................................................................................. 26 3 4 0.25 1 1 0 0 0
.................................CATCTGTTCTGCTCCTGTCCAGC................................................................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0
.................................CATCTGTTCTGCTCCTGTCCAGCTAA................................................................................................................................................................................................ 26 2 4 0.25 1 1 0 0 0
...................................TCTGTTCTGCTCCTGTCCAGCTA................................................................................................................................................................................................. 23 1 4 0.25 1 1 0 0 0
...................................TCTGTTCTGCTCCTGTCCAGCT.................................................................................................................................................................................................. 22 0 4 0.25 1 0 1 0 0
...............................AACATCTGTTCTGCTCCTGTCCAGC................................................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0
.................................CATCTGTTCTGCTCCTGTCCAGCTA................................................................................................................................................................................................. 25 1 4 0.25 1 1 0 0 0
..............................GAACATCTGTTCTGCTCCTGTCCA..................................................................................................................................................................................................... 24 0 6 0.17 1 1 0 0 0
.............................................................................................................................................................................ACTGCTGACATGAAGTCTCACTT....................................................... 23 0 8 0.13 1 1 0 0 0
.............................................................................................................................................................................ACTGCTGACATGAAGTCTCACT........................................................ 22 0 8 0.13 1 1 0 0 0
...........................................................CAGAAGAAGAAAGACAACTAC........................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0
............................................................................CAACACTTAGGCTCTGCCTTTC......................................................................................................................................................... 22 0 14 0.07 1 1 0 0 0
...........................................................................ACAACACTTAGGCTCTGCCTTTC......................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0
...........................................................................ACAACACTTAGGCTCTGCCT............................................................................................................................................................ 20 0 15 0.07 1 1 0 0 0
...............................................................................................................................................................................................................................ACCCCAATGGGCGGTCACC......... 19 3 20 0.05 1 0 0 0 1
............................................................................CAACACTTAGGCTCTGCGAC........................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0
......................................GTTCTGCTCCTGTCCAGCT.................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0
.....................................TGTTCTGCTCCTGTCCAGC................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
....................................CTGTTCTGCTCCTGTCCAGCT.................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

ACGGCATCAACGTCTCTGCTCCTCCTCTGTCTTGTAGACAAGACGAGGACAGGTCGAAAGTCTTCTTCTTTCCGATGTTGTGAATCCGAGACGGAAAGATTGGCTGTACAGCCTCTACAGATGTGATACAGGGTCTTTCTAGCGATTGAAATATTCTCGTAGACCGACCTTGTTGACGACTGTACTTCAGAGTGAAACGTCCTTTCCTTACTAGGGTTCGCCATAGGGTTACCCGGCTGTGGTCTGATTTA
*******************************************************........((((...))))......((((....))))..(((((..((...(((.((((..((((.(((...........)))))))..)))).)))..))..)))))............**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M042
female body
 V042
embryo
 V057
head
 V111
male body
...........................................................................................................................................................................................................TTCCTTACTAGGGTTCGCCATAG......................... 23 0 2 0.50 1 1 0 0 0
..........................................................................................................................................................................................TCAGAGTGAAACGTCCTTTCCTTACT....................................... 26 0 2 0.50 1 1 0 0 0
................................................................................................................................CAGGGTCTTTCTAGCGATTGAAAT................................................................................................... 24 0 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................................TCCTTTCCTTACTAGGGTTCGCCAT........................... 25 0 2 0.50 1 1 0 0 0
...............................................................................................................................................................................................ATGATACGTCCTTTCGTTACT....................................... 21 3 3 0.33 1 0 1 0 0
.......AAACGTCTCTGCTCCTCCTT................................................................................................................................................................................................................................ 20 2 3 0.33 1 1 0 0 0
.................................................CAGGTCGAAAGTGTTCTTGTGT.................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0
...................................................................CTTTGGGAGGTTGTGAATC..................................................................................................................................................................... 19 3 17 0.29 5 3 0 0 2
...................................................................CTTTGGGAGGTTGTGAATCC.................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0
.....ATCGACGTCTCTGCTCCTCCT................................................................................................................................................................................................................................. 21 1 9 0.11 1 1 0 0 0
......................................................................TCCGATGTTGTGAATCCG................................................................................................................................................................... 18 0 19 0.05 1 0 1 0 0
.............................................................................................................................ATACAGGGTCTTTCTAGCGGTTGAAAT................................................................................................... 27 1 20 0.05 1 1 0 0 0
..................................................................................................................................................................................................................CTAGGGTTCGCCAAGGGGT...................... 19 2 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:1212105-1212355 - dpe_996 TGCCGTAGTTGCAGAGACGAGGAGGAGA---------CAGA-----ACATCTGTTCTGCTCCTGTCCAGCTTTCAGAAGAAGAAAGGCTACAACACTTAGGCTCTGCCTT-TCTAACCGACATGTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTGGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA-------CTT----------TGC-A-GGA---AAGGAATG----------------ATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAAT
dp5 3:1038526-1038775 - dps_929 TGCCGTAGTTGCAGAGAGGAGGAGGATA---------CAGA-----ACATCTGTTCTGCTCCTGTCCAGCTTTCAGCAGAA-GAAGGCTACAACACTTAGGCTCTGCCTT-TCTAACCGACATCTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTAGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA-------CTT----------TGC-A-GGA---AAGGAATG----------------ATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAAT
droGri2 scaffold_14983:98514-98790 + TGCAGAAGCTGCAAAGACGAGGAGGAAGTGGAATCTCCGGA-----ACATTTCTTCTGCCACTGCCCAGCACTTGCTAGGA-AAAGGCTGGAAATCCTGGGAAATTACTC-CCTAATTGATTTATCGGAGCTCCGACACATGAGACTGGCCAAAATAGCGAAATTCATAAACGCATCTGGCTGGTCAAATG-TTTAA--------ATGTTAGAAATGCTTTGGAGG---------CACGACTG--C----AGGA---GGAAACACCCCTAGAT--CCCTTTCGGTATCACAACGGGCCAAATATAGCCTAAGT
droAna3 scaffold_13260:1206876-1207129 + AG------CTGTAGGGTCAAAGAAGAAGAATAAACTGTTAA-----GCATCCTCTATGCCACTGCTCAGCCCTGCAGTCTT-TCCGCCTACTACATGTAGGTGATAGGTTTCTTTACCACCATCTCGGTGATGTCAGAAATAGATCCAAACAGCATAGAAAAATTTACTAAAGCCTCAGGGTGGAGAAACTGCTGGA--------GT-----TCTTT-------CTG----------CGA-A-TAA---AGGGAAT------------TAGATCCGGCTTATGGTATCACAAGAGACCGAAAACGGTCTAAGT
droBip1 scf7180000395048:22460-22698 - TGCCGCAGCTGTAAAGGCGATGAGGAGAAAGAAAAAAGAAGAAGAAGCATATTCTATGCCATAGTCT-------------C-TAAGAATTTAACATCTCGGAGATCCATT-CCTAACTGATATGACGGAGGTGTCAGATATTGATCCAAAAA-----------TGGATCAATATCTCAGGGTGGGGAAATGGCTTGA--------CCT-TGGTC----------------------CTAC-GGG-A-AAG-GA------------AAGTAGAT-TCACATACGTTATCACAAGAGACAGAGCACGGTAAAAGT
droEle1 scf7180000491097:26059-26320 - TGCAAAAACTGCAGGGACGAGGAGGGGAAGGAAACGGTGGA-----ATACCTGTTCTGTTCCTGCCCGGCCCTATGCTGAA-CTAAACTGTACCACTTAGGGAATCCCGT-CATAAGCAGTCTATCTGAACTGGCGAATATAAGCCTAAAGCGAATAATAAAATTCATGAGAGCTAT--GCTAGGACGGCTGCGGTA----------------CGAG-------CAGTAGACAATAATATAGG--GAAGG-------AGACACA---------GATCCACGCGGTATCACAATGAATCTTCG-AGGTCTATGT
droRho1 scf7180000769000:26725-26985 - TGCAGAAGCTGCAGGGATGAGGAAGAAGAGGAAACGGTGGA-----ACACCTACTCTGTTCATGCCCAGCCCTTTGCGGGC-TCAGACTGAAACACTTAGGATATCCTTT-CATAAATGACCTGACCGAAATATCGCAGACTAACCTGAAGAGTCTAAGCTCTTTTATTAAATCCTCCGGATGGGGGACCTGCTGATCGACCAACTTA-CAGGCTGA-------CT---------CTTAACGG--ATAGG-------GGACCCA-------------------AAATCACAATGGACCCACAGAGGTCTAAGT
droBia1 scf7180000301738:11491-11705 - TATAAAAGTTGCAAGGATAAAGAAGAAGATAAAACGGTAGA-----ACACTTTCTCTGATTTTCCCCAGCACTATGCAGAC-TTA--------------------CCCTT-CACCAACGATCTTACCGAAATATCGGAGAATAGGCTTAAAAATATAAACGCATTTATAAAATCTTCTGGTTGAAAAAAAA--------------------------------------------CATAAAAG--ATAGG-------GGACCCA-----AAAG--ATTATACGGTATCACAATGGATCCACA-----------
droTak1 scf7180000410757:2770-3047 + TGTAGAAGCTGCAGGGATGAGGAAGAAGAGGAAACGGTGGA-----AGACCTACTCTGTTCATGCCCAGCCCTATGCAGGC-TTAGACTGAAACACTTAGGATATCCTTT-CATAAATGACCTGACCGAAATATCGTAGATTAATCTGAAGAATCTAAGCTCTTTTATTAAATCCTCCGGATGGGGGACTTGCTGATCGACCAACCTA-CAGGCTGA-------CT---------CTTAACGG--ATAGG-------GGACCCAAAAATAGAG--ATAATACGGTATCACAATGGACCCACAGAGGTCTAAGT
droYak3 2L:21032098-21032358 + TGCCGTAGCTGTAGAGACGAAGAAATGGAAGAAACGGTAGA-----GCATCTACTATGCCACCGTCCAGCACTGCAAGCAA-AAAGACTTGCCCAATTAGGAAGCAGATT-TCTGATAGACACGTCCGACCTGTCTGACACCAATCCACATCGGATACAAAAATTCACCAGCGCCTCTGGCTGGGAAAACTGGTAAC--------TTC-ACACGA---------AC---------CTCGACGG--GCAAAAGGGGAA----------------AACATACATGGTATCACAATGGACCTCTAATAGTCTAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TGCCGTAGTTGCAGAGACGAGGAGGAGA---------CAGA-----ACATCTGTTCTGCTCCTGTCCAGCTTTCAGAAGAAGAAAGGCTACAACACTTAGGCTCTGCCTT-TCTAACCGACATGTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTGGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA-------CTT----------TGC-A-GGA---AAGGAATG----------------ATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................TCTGTTCTGCTCCTGTCCAG....................................................................................................................................................................................................................................................2041.757430000
.............................................................................................................................................................................................................................................TGC-A-GGA---AAGGAATG----------------ATCCCAAG................................2320.501010000
.................................................TCTGTTCTGCTCCTGTCCAGC...................................................................................................................................................................................................................................................2140.502020000
.................................................TCTGTTCTGCTCCTGTCCAGT...................................................................................................................................................................................................................................................2150.402020000
...............................................CATCTGTTCTGCTCCTGTCCAGCA..................................................................................................................................................................................................................................................2440.251010000
...............................................CATCTGTTCTGCTCCTGTCCAGC...................................................................................................................................................................................................................................................2340.251010000
...............................................CATCTGTTCTGCTCCTGTCCAGCTAA................................................................................................................................................................................................................................................2640.251010000
.................................................TCTGTTCTGCTCCTGTCCAGCTA.................................................................................................................................................................................................................................................2340.251010000
.................................................TCTGTTCTGCTCCTGTCCAGCT..................................................................................................................................................................................................................................................2240.251100000
........................................A-----ACATCTGTTCTGCTCCTGTCCAGC...................................................................................................................................................................................................................................................2540.251010000
...............................................CATCTGTTCTGCTCCTGTCCAGCTA.................................................................................................................................................................................................................................................2540.251010000
.......................................GA-----ACATCTGTTCTGCTCCTGTCCA.....................................................................................................................................................................................................................................................2460.171010000
............................................................................................................................................................................................ACTGCTGAC--------ATG-AAGTCTCA-------CTT----------............................................................................2380.131010000
............................................................................................................................................................................................ACTGCTGAC--------ATG-AAGTCTCA-------CT.......................................................................................2280.131010000
..........................................................................................CAACACTTAGGCTCTGCCTT-TC........................................................................................................................................................................................................22140.071010000
.........................................................................................ACAACACTTAGGCTCTGCCTT-TC........................................................................................................................................................................................................23140.071010000
.........................................................................................ACAACACTTAGGCTCTGCCT............................................................................................................................................................................................................20150.071010000
..........................................................................................CAACACTTAGGCTCTGCGAC-..........................................................................................................................................................................................................20200.051010000
....................................................GTTCTGCTCCTGTCCAGCT..................................................................................................................................................................................................................................................19200.051010000
...................................................TGTTCTGCTCCTGTCCAGC...................................................................................................................................................................................................................................................19200.051010000
..................................................CTGTTCTGCTCCTGTCCAGCT..................................................................................................................................................................................................................................................21200.051010000
dp5
TGCCGTAGTTGCAGAGAGGAGGAGGATA---------CAGA-----ACATCTGTTCTGCTCCTGTCCAGCTTTCAGCAGAA-GAAGGCTACAACACTTAGGCTCTGCCTT-TCTAACCGACATCTCGGAGATGTCTACACTATGTCCCAGAAAGATCGCTAACTTTATAAGAGCATCTAGCTGGAACAACTGCTGAC--------ATG-AAGTCTCA-------CTT----------TGC-A-GGA---AAGGAATG----------------ATCCCAAGCGGTATCCCAATGGGCCGACACCAGACTAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........TGCAGAGAGGAGGAGGATA---------CAGA-----ACA........................................................................................................................................................................................................................................................................2612.0020000000020
......................................................................TTTCAGCAGAA-GAAGGCTACAACG..........................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................CACTATGTCCCAGAAAGATCGCTAACTT....................................................................................................................................................2811.0010000001000
.........................................................................................................GCCTT-TCTAACCGACATCTCGGAGA......................................................................................................................................................................................2521.0020200000000
.................................................................................................................................................................................................TGAC--------ATG-AAGTCTCA-------CTT----------TGC-A-G.....................................................................2311.0010100000000
.................................................................................................................................................CCCAGAAAGATCGCTAACTTTATA................................................................................................................................................2411.0010000000100
.........................................................................................................GCCTT-TCTAACCGACATCTCG..........................................................................................................................................................................................2121.0020200000000
.........................................................................................................GCCTT-TCTAACCGACATCTCGGA........................................................................................................................................................................................2320.5010100000000
.........................................................................................................GCCTT-TCTAACCGACATCTCGG.........................................................................................................................................................................................2220.5010100000000
.........................................................................................................GCCTT-TCTAACCGACATCTCGGAGATGT...................................................................................................................................................................................2820.5010000001000
.........................................................................................................GCCTT-TCTAACCGACATCTCGGAG.......................................................................................................................................................................................2420.5010100000000
..........................................................................................................CCTT-TCTAACCGACATCTCGGA........................................................................................................................................................................................2220.5010100000000
..........................................................................................................................TCTCGGAGATGTCTACACTATGTCT......................................................................................................................................................................2530.3310100000000
...............................................................................AA-GAAGGCTACAACACTTAGGCTC.................................................................................................................................................................................................................2460.3320200000000
........................................................................TCAGCAGAA-GAAGGCTACAACACTTAGG....................................................................................................................................................................................................................2860.1710100000000
..................................................................................GAAGGCTACAACACTTAGGCT..................................................................................................................................................................................................................2170.1410100000000
.....................................................................................GGCTACAACACTTAGGCTC.................................................................................................................................................................................................................1970.1410100000000
...............................................................................AA-GAAGGCTACAACACTTAGGCT..................................................................................................................................................................................................................2370.1410100000000
.............................................................................................................................CGGAGATGTCTACACTATGTCC......................................................................................................................................................................2270.1410100000000
.........................................................................CAGCAGAA-GAAGGCTACAACACT........................................................................................................................................................................................................................23120.0810100000000
........................................A-----ACATCTGTTCTGCTCCTG.........................................................................................................................................................................................................................................................19200.0510100000000
.........................................................................CAGCAGAA-GAAGGCTACAACAC.........................................................................................................................................................................................................................22200.0510100000000
..........................................................................AGCAGAA-GAAGGCTACAACAC.........................................................................................................................................................................................................................21200.0510100000000
........................................................................TCAGCAGAA-GAAGGCTACAACAC.........................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................................................................................................................................................................GGAATG----------------ATCCCAAGCGGTATC.........................21200.0510100000000
........................................................................TCAGCAGAA-GAAGGCTACAA............................................................................................................................................................................................................................20200.0510100000000
........................................................................TCAGCAGAA-GAAGGCTACAAC...........................................................................................................................................................................................................................21200.0510000000010
droGri2
TGCAGAAGCTGCAAAGACGAGGAGGAAGTGGAATCTCCGGA-----ACATTTCTTCTGCCACTGCCCAGCACTTGCTAGGA-AAAGGCTGGAAATCCTGGGAAATTACTC-CCTAATTGATTTATCGGAGCTCCGACACATGAGACTGGCCAAAATAGCGAAATTCATAAACGCATCTGGCTGGTCAAATG-TTTAA--------ATGTTAGAAATGCTTTGGAGG---------CACGACTG--C----AGGA---GGAAACACCCCTAGAT--CCCTTTCGGTATCACAACGGGCCAAATATAGCCTAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
AG------CTGTAGGGTCAAAGAAGAAGAATAAACTGTTAA-----GCATCCTCTATGCCACTGCTCAGCCCTGCAGTCTT-TCCGCCTACTACATGTAGGTGATAGGTTTCTTTACCACCATCTCGGTGATGTCAGAAATAGATCCAAACAGCATAGAAAAATTTACTAAAGCCTCAGGGTGGAGAAACTGCTGGA--------GT-----TCTTT-------CTG----------CGA-A-TAA---AGGGAAT------------TAGATCCGGCTTATGGTATCACAAGAGACCGAAAACGGTCTAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGCCGCAGCTGTAAAGGCGATGAGGAGAAAGAAAAAAGAAGAAGAAGCATATTCTATGCCATAGTCT-------------C-TAAGAATTTAACATCTCGGAGATCCATT-CCTAACTGATATGACGGAGGTGTCAGATATTGATCCAAAAA-----------TGGATCAATATCTCAGGGTGGGGAAATGGCTTGA--------CCT-TGGTC----------------------CTAC-GGG-A-AAG-GA------------AAGTAGAT-TCACATACGTTATCACAAGAGACAGAGCACGGTAAAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
TGCAAAAACTGCAGGGACGAGGAGGGGAAGGAAACGGTGGA-----ATACCTGTTCTGTTCCTGCCCGGCCCTATGCTGAA-CTAAACTGTACCACTTAGGGAATCCCGT-CATAAGCAGTCTATCTGAACTGGCGAATATAAGCCTAAAGCGAATAATAAAATTCATGAGAGCTAT--GCTAGGACGGCTGCGGTA----------------CGAG-------CAGTAGACAATAATATAGG--GAAGG-------AGACACA---------GATCCACGCGGTATCACAATGAATCTTCG-AGGTCTATGTSizeHit CountTotal NormTotal
No Reads
droRho1
TGCAGAAGCTGCAGGGATGAGGAAGAAGAGGAAACGGTGGA-----ACACCTACTCTGTTCATGCCCAGCCCTTTGCGGGC-TCAGACTGAAACACTTAGGATATCCTTT-CATAAATGACCTGACCGAAATATCGCAGACTAACCTGAAGAGTCTAAGCTCTTTTATTAAATCCTCCGGATGGGGGACCTGCTGATCGACCAACTTA-CAGGCTGA-------CT---------CTTAACGG--ATAGG-------GGACCCA-------------------AAATCACAATGGACCCACAGAGGTCTAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
TATAAAAGTTGCAAGGATAAAGAAGAAGATAAAACGGTAGA-----ACACTTTCTCTGATTTTCCCCAGCACTATGCAGAC-TTA--------------------CCCTT-CACCAACGATCTTACCGAAATATCGGAGAATAGGCTTAAAAATATAAACGCATTTATAAAATCTTCTGGTTGAAAAAAAA--------------------------------------------CATAAAAG--ATAGG-------GGACCCA-----AAAG--ATTATACGGTATCACAATGGATCCACA-----------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTAGAAGCTGCAGGGATGAGGAAGAAGAGGAAACGGTGGA-----AGACCTACTCTGTTCATGCCCAGCCCTATGCAGGC-TTAGACTGAAACACTTAGGATATCCTTT-CATAAATGACCTGACCGAAATATCGTAGATTAATCTGAAGAATCTAAGCTCTTTTATTAAATCCTCCGGATGGGGGACTTGCTGATCGACCAACCTA-CAGGCTGA-------CT---------CTTAACGG--ATAGG-------GGACCCAAAAATAGAG--ATAATACGGTATCACAATGGACCCACAGAGGTCTAAGTSizeHit CountTotal NormTotal
No Reads
droYak3
TGCCGTAGCTGTAGAGACGAAGAAATGGAAGAAACGGTAGA-----GCATCTACTATGCCACCGTCCAGCACTGCAAGCAA-AAAGACTTGCCCAATTAGGAAGCAGATT-TCTGATAGACACGTCCGACCTGTCTGACACCAATCCACATCGGATACAAAAATTCACCAGCGCCTCTGGCTGGGAAAACTGGTAAC--------TTC-ACACGA---------AC---------CTCGACGG--GCAAAAGGGGAA----------------AACATACATGGTATCACAATGGACCTCTAATAGTCTAAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................TGCCACCGTCCAGCACTGCAAGCAA-A......................................................................................................................................................................................................................................2615.00500000000005
..............................................GCATCTACTATGCCACCGTCCAGCACT................................................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................TGGTAAC--------TTC-ACACGA---------AC---------CTCGACGG--GC..................................................................2811.00100100000000
.....................................................................................................................................................................................TGGGAAAACTGGTAAC--------TTC-A.......................................................................................................2011.00101000000000
................................................................................................................CTGATAGACACGTCCGACCTGTCTGA...............................................................................................................................................................................2630.67202000000000
...........................................................................................................ATT-TCTGATAGACACGTCCGACCTG....................................................................................................................................................................................2520.50101000000000
.............................................................................................................T-TCTGATAGACACGTCCGACCTGTC..................................................................................................................................................................................2520.50100100000000
...............................................................................................................................................................................................GGTAAC--------TTC-ACACGA---------AC---------CTCGACGG--GCAT................................................................2920.50100000010000
................................................................TCCAGCACTGCAAGCAA-AAAGACT................................................................................................................................................................................................................................2440.50201100000000
........................ATGGAAGAAACGGTAGA-----GCATCTAC...................................................................................................................................................................................................................................................................25200.501002100020005
................................................................................................................CTGATAGACACGTCCGACCTGTCTG................................................................................................................................................................................2530.33101000000000
................................................................................................................................................TCCACATCGGATACAAAAATTCACCAGC.............................................................................................................................................28200.30605100000000
........................ATGGAAGAAACGGTAGA-----GCAT.......................................................................................................................................................................................................................................................................21200.15301000010001
.................................................................................................................................................................................................TAAC--------TTC-ACACGA---------AC---------CTCGACGG--G...................................................................24200.10202000000000
........................ATGGAAGAAACGGTAGA-----GCATCT.....................................................................................................................................................................................................................................................................23200.10202000000000
.................................................................................................................................................................................................TAAC--------TTC-ACACGA---------AC---------CTCGACGG--GC..................................................................25180.06101000000000
.................................................................................................................................................................................................TAAC--------TTC-ACACGA---------AC---------CTCGACGG--GCA.................................................................26180.06101000000000
......................................................................................................................................................TCGGATACAAAAATTCACCAGCGCC..........................................................................................................................................25200.05100100000000
........................ATGGAAGAAACGGTAGA-----GCATCTA....................................................................................................................................................................................................................................................................24200.05100000010000
........................ATGGAAGAAACGGTAGA-----GCATC......................................................................................................................................................................................................................................................................22200.05101000000000
..........................................................................................................................................................ATACAAAAATTCACCAGCGCCTC........................................................................................................................................23200.05101000000000
................................................................................................................................................TCCACATCGGATACAAAAATTCACCAG..............................................................................................................................................27200.05101000000000
.................................................................................................................................................................................................TAAC--------TTC-ACACGA---------AC---------CTCGACG.......................................................................22200.05101000000000
..............................................................................................................................................................AAAAATTCACCAGCGCCTCTGGCTGG.................................................................................................................................26200.05100100000000
................................................................................................................................................TCCACATCGGATACAAAAATTCACC................................................................................................................................................25200.05100100000000
....................AGAAATGGAAGAAACGGTAGA-----GCATC......................................................................................................................................................................................................................................................................26200.05100000010000
........................................................................................................................................................GGATACAAAAATTCACCAGCGCCTC........................................................................................................................................25200.05100100000000
...........................................................................................................................................................TACAAAAATTCACCAGCGCCTCTGGC....................................................................................................................................26200.05100100000000
...............................................................................................................................................................................................................C-ACACGA---------AC---------CTCGACGG--GCAA................................................................21200.05100000010000
...................................................................................................................ATAGACACGTCCGACCTG....................................................................................................................................................................................18200.05110000000000
....................AGAAATGGAAGAAACGGTAGA-----GCA........................................................................................................................................................................................................................................................................24200.05101000000000

Generated: 06/08/2015 at 03:38 PM