ID:

dpe_986

 Coordinate:

scaffold_2:608012-608162 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.7 -17.5 -17.5

Flybase annnotation

CDS [Dper\GL11024-cds]; exon [dper_GLEANR_11145:1]; intron [Dper\GL11024-in]

No Repeatable elements found

Sense Strand Reads

------------------------##########################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGTAATGGTTCCAAGGTGCCATACAGAAGAAAGTGTGCAAAAATCGATTTTGTAGTGCAAAATGAAAGATAATGTAAAACAGTGCGCCACGACCCCTTTCCAATTGGTGGCATGTAGCTATGGTTGTAGTGGTTTGTAGTGAAGTAGCTGGTGTAACCTGCTAACAAAATTACGGTTTTGGTGTTGGTTATTTCTTAT
************************************************************************************************.........((..((((........................(((.((((((............(((((.....))))))))))).)))..))))..))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 M021
embryo
 V042
embryo
 V057
head
 V050
head
............................CATCAAGTATGAATAATAAACTC........................................................................................................................................................................................................ 23 1 1 3.00 3 0 0 3 0 0 0
...............................................................................................................................................................................GTTGTAGTGGTCTGTAGTGAAGT..................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..............................................................................................................................................................................GGTTGTAGTGGTTTGTAGTG......................................................... 20 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................................................................GTGGTTTGTAGTGAAGTAGC.................................................. 20 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................................GTAGTGGTTTGTAGTGAAGT..................................................... 20 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................GTGAAGTAGCTGGTGTAACCTG...................................... 22 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................GTTTGTAGTGGAGTAGCTGGT.............................................. 21 1 1 1.00 1 0 0 0 0 0 1
............................................................................................................................................................................................................................AATTACGGTTTTGGTGTTGGTT......... 22 0 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................ATTACGGTTTTGGTGTTGG........... 19 0 1 1.00 1 0 0 0 1 0 0
............................................................................................................................................................TTGGTGGCATGTAGCTATGG........................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
................................................................................................TCGATTTTGTAGTGCAAAATG...................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................GTGGTTTGTAGTGAGGTGGC.................................................. 20 2 2 1.00 2 2 0 0 0 0 0
.............................................................................................................................TGTAAAACAGTGCGCCGCGAC......................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................TGGTTTGTAGTGAAGTAGC.................................................. 19 0 1 1.00 1 0 1 0 0 0 0
...............AGTGTAAAAATGCCATCAA......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
....TGCAACCATTAAGTGTAAAAATGC............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................GTTTGTAGTGAAGTAGCTGGT.............................................. 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................GTGAAGTAGCTGGTGTAACCT....................................... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................TGGTTTGTAAAGAAGTATCTGG............................................... 22 3 2 0.50 1 0 0 0 0 1 0
......................................................................................................................................................................................TGGTTTGTAAGGAAGTAGGTGG............................................... 22 3 3 0.33 1 0 0 0 0 1 0
........................................................................................................................................................................................GTTTGTCGTGAAGCAGCT................................................. 18 2 6 0.33 2 0 0 2 0 0 0
............................................................................................................................................................TTGGTGGCTGGTAGTTATGGT.......................................................................... 21 3 4 0.25 1 0 0 0 0 1 0
......................................GAATAATAGGCTGTAGGTA.................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 1 0 0 0
............................................................................................................................................................................ATGGCAGTTGTGGTTTGTA............................................................ 19 3 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................................................................................................TAGCTGGTGGATCCTGCCA................................... 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TTCAACGTTGGTAATTCACATTTTTACGGTAGTTCATACTTATTATTTGACATTCATTACCAAGGTTCCACGGTATGTCTTCTTTCACACGTTTTTAGCTAAAACATCACGTTTTACTTTCTATTACATTTTGTCACGCGGTGCTGGGGAAAGGTTAACCACCGTACATCGATACCAACATCACCAAACATCACTTCATCGACCACATTGGACGATTGTTTTAATGCCAAAACCACAACCAATAAAGAATA
*********************************************************.........((..((((........................(((.((((((............(((((.....))))))))))).)))..))))..))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V111
male body		 M042
female body
 V050
head
 V057
head
 V042
embryo
.................................................................................................................................................GGGGAAAGGTTAACCACCGTA..................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................AGGTTAACCACCGTACATCGA............................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................CGGTGCTGGGGGAAGGTT............................................................................................... 18 1 1 1.00 1 0 0 1 0 0
..................................................................................................................................................GGGAAAGGTTAACCACCGTAC.................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................TTGGTCGCGTGGTGCTGGGGA..................................................................................................... 21 3 4 0.25 1 0 0 0 1 0
...........................................................................TGTCGTCTTTCACACTATTTTA.......................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:607962-608212 - dpe_986 AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------AA--GA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAAA--TGAA------A-------------G--------------------ATAATGTAAAACAGTGCG-------C-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAT--------------------GTA---------GCTATGGTTGTAGTGGT----------------------------TTGTA--GTGAAGTAGCT------------GGTGTAACCTGCTAACAAAATTACGGTT--TTGGTGTTGGT-------TA-T---------TTCTTA---------------------------T
dp5 3:421064-421315 - dps_909 AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------AA--GA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAAA--TGAA------A-------------G--------------------ATAATGTAAAACAGTGCG-------C-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAT--------------------GTA---------GCTATGGTTGTAGTGGT----------------------------TTGTA--GTGAAGTAGCT------------GGTGTAACCTGCTAACAAAATTACGGTT--TTGGTGTTGGT-------TT-T--------TTTCTTA---------------------------T
droWil2 scf2_1100000004954:3237526-3237816 + AATTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGTCCTCCCA----GGTGCCAGTGCAAGCA-------AATAAA-AATAGTGCA-AAATCGATTTTGTAGTGTGATAA-AG--------AGAAAA-AAA--GCA-------A-----AAT------AATGGAAAATAGTGT--------C-------C----------------------CCC---ATTTTCCAATTGGTGGCAAAAGAATAAGAAAAAGAAAAAGTA---------GTTATGGTTGTAATGGT----------------------------TTGTAGAGTGTAATAGTA----------TAAGTGGAAATT--------------------AAGGTGGTGGTAACAATATT-T--------TTTTTTAGCTAA-------------AAGC--ACAT
droVir3 scaffold_12875:19825721-19826028 + dvi_8025 AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA-----------AA--GA-AATAGTGCAAAAATCGATTTTGTAGTGAAT-GA-TAAA--------------AA--AGG-------A-----AAT---------GGAATATAGTGT-----------------AC-----------------GGTTCC-----AATCCAATTGGTGGCAT--------------------ATATATTATGTAGT-----TTGT--TGGTTGCCAATAAATACATAGCAAGTTC---ATTATA--GTGCAATAGTT---------TTTAGTGTAATTAGCTAACAAA--ATTCGTA--TCGGTGGTGGT-------GTAACTGTAATATGAAGCATGTACG--AGGTATAT----GCAAACAT
droMoj3 scaffold_6496:6380252-6380473 - AAGTTGCAACCATTAAGTTTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-TATGGTG-TG--------AAGCCA-TTTAAT-GAAATATAGTGATA-AAA-----A-AAATCGATTTTGTAGTGAATAA--TAAA---AAAAGAA---AAT--GAA-------AATAAAAATAAAGAAAATGGAAAATAGTGC-----------------ACGGATACCGTAAGCAATCGGATCC-----AATCCAATTGGTGGCAT--------------------A-A-GTTATG---------------TAGT----------------------------TTGT-------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:18174026-18174363 + AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGTA--CCAA----GGAGCCA-TGCTA--A-------A---AA-AAA--AGCAAAAATCGATTTTGTAGTGAAAAA--TA----------------AA--GAG--------------------GAAATGGAAAATAGTGCACGGGTACC-GTA--GC--------------CAATCGGACCA-----AATCCAATTGGTGGCAA--------------------ATTAATTATGTAG--TTTGTTGT--TGGTTGCCAATAAAATCATGGCAAATTTTCTATAATA--GTGCAATAGTT---------TTAAGTGTAATATGTTAACTAA--TTTCGGA--TCGGTGTTGGTAAT----ATAACTGAAGAATTTAGCCTGAACGCCATATATATGAAATCATATAT
droAna3 scaffold_13266:2564903-2565163 + dan_1741 AATTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TATG---G-------AG--GA-AAAAGTGCC-AGTTCGATTTTGTAGTGTGAAGAAAAAAA--------A---AAT--GAGAAAATAAAAAAGAAAAG----------AAA--AGTGCGAAGGAGTTCGTA--ACAC-----------------GACCCC-----TTTC--ATTGGTGGCAT--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGTAATAGTT----------TTAGTGTAACCTGCTAAT-----TCGGGTACTGTGGTGTTGGT-------TT-----------TTTTCACGT-------------------------
droBip1 scf7180000396759:1626679-1626925 + AATTTGAAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TA--T--A-------AAG-GA-AAAAGTGCC-AGTTCGATTTTGTAGTGTGAA-----------AAAGAA---AAT--GAG-------AAAAGAAAAA----------AGAAAAGTGCTAGGGAGTTCGTA--ACAC-----------------GACCCC------TTCCAATTGGTGGCAT--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGTAATAGTT----------TTAGTGTAACCTGCTAAT-----TCGG------TGGTGTTGGT-------T------------TTTTCACGT-------------------------
droKik1 scf7180000302367:389071-389328 + AAATTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGCT-TCCTA-CTGGTCGCCA-CACAC--A-------A-GAGA-AAAAGTGCA--AGTCGATTTTGTAGTGCGAAGAA------------------AT--GAA-------A-----AATC---------AAAAATAGTGTGT-GGAGTC-GCAGTGCTC-----------------GACCCC-----TTTCCAATTGGTGGCTG--------------------------------GTCTTGGTTGTAGTGGT----------------------------TTGTA--GTGTAA--ATT----------TAAGTGTATCCCGCTAAT---------------CGGTGTTGGT-------TT-T--------TTTTTCACCTAC---------------------AT
droFic1 scf7180000453809:456803-457068 - AAATTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTC-TCCAA-CTGGATGCCA-TACAC--A-------AAGAAA-AAAAGTGCA--AGTCGATTTTGTAGTGTGAAAA---A-------AGAAAGAAAA--GAG-------A-----AATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACCCC-----TCTCTAATTGGTGGCAA--------------------------------GGTTTGGTTGTGATGGT----------------------------TTGTA--GTGCTATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGGATA--ACGGTGTTGGT-------TTAT--------TTTTT------------------------------
droEle1 scf7180000491214:3596109-3596372 - AAGTTGCAACCATTAAAAGTGAAAATGCCTTCCAATATGAATAATAAACTGTAAGTTAATGGTT-TCCA--TTGGATGCCA-TATAC--A-------AAGAGA-AAAAGTGCA-TAGTCGATTTTGTAGTGAAAAGAAAAA-----------------------------A-----AATG----------A-AATAGTGCGAGGGAGTC-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAA--------------------GTA---------GGTTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TTAGTGTAACCTGCTAATATA--TCGTGTA--ACGGTGTTGGT-------TTAT--------TTTCTCACGT-------------------------
droRho1 scf7180000779932:500675-500949 - AAGTTGCAACCATTAAGTGTTAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGTC-TCCA-TTTGGATGCCA-TACAC--A-------AAGAAAAAAAAGTGCA-AACTCGATTTTGTAGTGCAA-GAAAGA-------AGAAAA-AAA--GAG-------A-----AATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAA--------------------ATA---------GGTTTGGTTGCAATGGT----------------------------TTGTA--GTGCAATAGTT----------TTAGTGTAACCTGCTAATAAA--TCGGGTA--ACGGTGTTGGT-------TTAT--------TTTCTCAC---------------------------
droBia1 scf7180000302292:877230-877505 - AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAAAATGAATAATAAACTGTAAGT-AATGGCA-TCCGAGCTGGAGGCCA-TACAC--G-------AAGAGAGAAAAGTGCA-AAGTCGATTTTGTAGTGCCGAGAAAG--------AGAA---AAA--GAG-------A-----AATG----------AAAATAGTGCCAGGGAGTC-------CAC-----------------GACCCC-----TTTCCCATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGGGTA--ACGGTGTTGGT-------TCGC--------TCCCCCACGT-------------------------
droTak1 scf7180000415260:180623-180909 + AAGTTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAGTTGGACGCCA-TACAC--G-------AAGAGAAAAAAGTGCA-AAGTCGATTTTGTAGTGCAAAGAAAGA-------AGAAAG-AAA--GAGA------A-----AATG----------AAAATAGTGCG-GGGAGTC-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGAGTA--ACGGTGTTGGT-------TTAT--------TTCCTCACGTAC---------------GC--ACAC
droEug1 scf7180000409462:402001-402278 + AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCCAATTGGAGACCA-TACAC--G-------AAGAGAAAAAAGTGCT-AAGTCGATTTTGTAGTGCAAAGAA----------AGAA---AATGAGAA-------A-----AAAG----------AAAATAGTGCTAGGGAGTC-------CAC-----------------GACCCC-----TTTCAAATTGGCGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TTAGTGTAACCTGGTAATAAA--TCGAGTA--ACGGTGTTGGT-------TTAT--------TTTATAACGTAC-----------------------
dm3 chr2R:8061343-8061645 - AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTG-TCCAAAGCGGTTGCCA-TACAC--G-------ACGACA-AAAAGTGCA-AAGTCGATTTTGTAGTGCGAAGAATAAAA--AAAAGCA---AAA--GAG-------AAATGAAATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACTCCTTTCCTTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTTAAGTGTAGTATAAGTGTAACCTGCTAACAAA--TCGGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC-----------------------
droSim2 2r:8766035-8766333 - dsi_29017 AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACAC--G-------ACGACA-AAAAGTGCA-AAGTCGATTTTGTAGTGCGAAGAATAAAAAAAAAAGAA---AAA--GAG-------AAATGAAATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACTCCTTTCCTTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACATGCTAACAAA--TCTGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC---------------GC----AT
droSec2 scaffold_1:5606391-5606691 - AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACAC--G-------ACGACA-AAAAGTGCA-AAGTCGATTTTGTAGTGCGAAGAATAAAA--AAAAGAA---AAA--GAG-------AAATGAAATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACTCCTTTCCTTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACATGCTAACAAA--TCTGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC---------------GCATACGC
droYak3 2R:8889774-8890071 + AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACAC--G-------AGGAAA-AAAAGTGAA-AAGTCGATTTTGTAGTGCGAAGAATGAAAAAAAAAGAA---AAA--GAG-------A-----AATG----------AAAATAGTGCTAGGGAGTC-------CAC-----------------GACCCCTTTCCATTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAACAAA--TCGGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACTTAC---------------GCAGACGC
droEre2 scaffold_4845:17732604-17732897 + AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACAC--G-------ACGAGA-TAAAGTGCA-AAGTCGATTTTGTAGTGCGATGAAAAAAA-------AAAAATAA--GAG-------A-----AATG----------AAAATAGTGCGAGGGAGTT-------CAC-----------------GACTCCATTCCATTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC---------------GCAGACGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------AA--GA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAAA--TGAA------A-------------G--------------------ATAATGTAAAACAGTGCG-------C-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAT--------------------GTA---------GCTATGGTTGTAGTGGT----------------------------TTGTA--GTGAAGTAGCT------------GGTGTAACCTGCTAACAAAATTACGGTT--TTGGTGTTGGT-------TA-T---------TTCTTA---------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................CATCAAGTATGAATAATAAACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
.............................................................................................................................................................................................................................................................................................................GGTTGTAGTGGT----------------------------TTGTA--GTG...................................................................................................................2013.003000003
....................................................................................................................................................................................................................................................................................................................GTGGT----------------------------TTGTA--GTGAAGTAGC............................................................................................................2012.002000002
.................................................................................................................................................................................................................................................................................................................GTAGTGGT----------------------------TTGTA--GTGAAGT...............................................................................................................2012.002000002
............................................................................................................................................................................................................................................................................................................................................................GTGAAGTAGCT------------GGTGTAACCTG....................................................................................2211.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATTACGGTT--TTGGTGTTGGT-------T..............................................2211.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGTT--TTGGTGTTGG.......................................................1911.001001000
..............................................................................................................................................................................................................................................................TTGGTGGCAT--------------------GTA---------GCTATGG...................................................................................................................................................................2011.001010000
.....................................................................................................................TCGATTTTGTAGTGCAAAA--TG......................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................................TGGT----------------------------TTGTA--GTGAAGTAGC............................................................................................................1911.001010000
...............AGTGTAAAAATGCCATCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....TGCAACCATTAAGTGTAAAAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
.......................................................................................................................................................................................................................................................................................................................GT----------------------------TTGTA--GTGAAGTAGCT------------GGT............................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................GTGAAGTAGCT------------GGTGTAACCT.....................................................................................2111.001010000
dp5
AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA---G-------AA--GA-AAGTGTGCAAAAATCGATTTTGTAGTGCAAAA--TGAA------A-------------G--------------------ATAATGTAAAACAGTGCG-------C-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAT--------------------GTA---------GCTATGGTTGTAGTGGT----------------------------TTGTA--GTGAAGTAGCT------------GGTGTAACCTGCTAACAAAATTACGGTT--TTGGTGTTGGT-------TT-T--------TTTCTTA---------------------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................ACAGTGCG-------C-------CAC-----------------GACCCC-----TTT........................................................................................................................................................................................................................2112.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATTACGGTT--TTGGTGTTG........................................................1911.0010100000000
.............................................................GT--TCCAA----GGTGCCA-TACA---G-------AA--.............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................TTGTAGTGGT----------------------------TTGTA--GTGAAG................................................................................................................2111.0010100000000
....TGCAACCATTAAGTGTAAAAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.........................................................................................................................................................................................AATGTAAAACAGTGCG-------C-------CAC-----------------G.....................................................................................................................................................................................................................................2111.0010100000000
.....GCAACCATTAAGTGTAAAAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
...........................................................................................................................................................................................TGTAAAACAGTGCG-------C-------CAC-----------------G.....................................................................................................................................................................................................................................1911.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATTACGGTT--TTGGTGTTGGT-------...............................................2111.0010100000000
....................................................AAGT-AATGGT--TCCAA----GGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
............................CATCAAGTATGAATAATAAACT................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................A-------------G--------------------ATAATGTAAAACAGTGCG-------C-------..........................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................GGTGGCAT--------------------GTA---------GCTATGGTTG................................................................................................................................................................2111.0010000010000
..................GTAAAAATGCCATCAAGTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................AGT-AATGGT--TCCAA----GGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............AGTGTAAAAATGCCATCAAGTATGAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................TGAAGTAGCT------------GGTGTAACCTG....................................................................................2111.0010000001000
..............................................................................................................................................................................................................................................................................................................GTTGTAGTGGT----------------------------TTGTA--GTG...................................................................................................................1911.0010000001000
...........................................................................................................................................................................................................................................................CAATTGGTGGCAT--------------------GTA---------GCTT......................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................TGGTGGCAT--------------------GTA---------GCTATGGT..................................................................................................................................................................2011.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGTT--TTGGTGTTGGT-------T..............................................2111.0010100000000
.........................TGCCATCAAGTATGAATAATAAACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
droWil2
AATTTGCAACCATTAAGTGTAAAAATGCCATCAAGTATGAATAATAAACTGTAAGT-AATGGTCCTCCCA----GGTGCCAGTGCAAGCA-------AATAAA-AATAGTGCA-AAATCGATTTTGTAGTGTGATAA-AG--------AGAAAA-AAA--GCA-------A-----AAT------AATGGAAAATAGTGT--------C-------C----------------------CCC---ATTTTCCAATTGGTGGCAAAAGAATAAGAAAAAGAAAAAGTA---------GTTATGGTTGTAATGGT----------------------------TTGTAGAGTGTAATAGTA----------TAAGTGGAAATT--------------------AAGGTGGTGGTAACAATATT-T--------TTTTTTAGCTAA-------------AAGC--ACATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................AAAATGCCATCAAGTATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
..................GTAAAAATGCCATCAAGTATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200110
........................................................................................................................................................................................................................................................................................................GTTATGGTTGTAATGGT----------------------------TTGTAGAGT....................................................................................................................2611.00100100
...........................................................................................................................................................................................................................................................................AATAAGAAAAAGAAAAAGTA---------G.........................................................................................................................................................................2111.00100100
.....................................................................................................................................................................................................................................................................CAAAAGAATAAGAAAAAGAAAAAGT....................................................................................................................................................................................2511.00100100
..TTTGCAACCATTAAGTGTAAAAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...................................................................................................................AATCGATTTTGTAGTGTGATAA-AG--------A.............................................................................................................................................................................................................................................................................................................................2511.00100100
.....................AAAATGCCATCAAGTATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
........................................................................................................................................................................................................................................................................................AAAAGTA---------GTTATGGTTGTAATGGT----------------------------.............................................................................................................................2411.00100010
.................................................................................................................................................................................................................................................................................................................GTAATGGT----------------------------TTGTAGAGTGT..................................................................................................................1911.00100100
....................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATT--------------------AAGGTGGTGGTA.....................................................2111.00101000
AATTTGCAACCATTAAGTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..............................................AACTGTAAGT-AATGGTCCT................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110000
droVir3
AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGT--TCCAA----GGTGCCA-TACA-----------AA--GA-AATAGTGCAAAAATCGATTTTGTAGTGAAT-GA-TAAA--------------AA--AGG-------A-----AAT---------GGAATATAGTGT-----------------AC-----------------GGTTCC-----AATCCAATTGGTGGCAT--------------------ATATATTATGTAGT-----TTGT--TGGTTGCCAATAAATACATAGCAAGTTC---ATTATA--GTGCAATAGTT---------TTTAGTGTAATTAGCTAACAAA--ATTCGTA--TCGGTGGTGGT-------GTAACTGTAATATGAAGCATGTACG--AGGTATAT----GCAAACATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....TGCAACCATTAAGTGTAAAAATGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................26118.0018000000000000000000000000315103111010010000000000000000000000000
AAGTTGCAACCATTAAGTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004000000000000000101000200000000000000000000000000000000000000000
.....................AAAATGCCATCAAACATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003001100000000000000000010000000000000000000000000000000000000000
...........ATTAAGTGTAAAAATGCCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000110000000000000000000000000000000000000000000
................................................................................................................AAAAATCGATTTTGTAGTGA..............................................................................................................................................................................................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
....................AAAAATGCCATCAAACATGAATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.....GCAACCATTAAGTGTAAAAATGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
AAGTTGCAACCATTAAGTGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
.....................AAAATGCCATCAAACATGAATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AATACATAGCAAGTTC---ATTATA--GTGCA.................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................AGTGT-----------------AC-----------------GGTTCC-----AATCCA.....................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
.......AACCATTAAGTGTAAAAATGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
..GTTGCAACCATTAAGTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..................................................GTAAGT-AATGGT--TCCAA----GGTGCCA-TAC.............................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................GA-AATAGTGCAAAAATCGATTTTGTAGT................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................T---------GGAATATAGTGT-----------------AC-----------------GGTTCC-----A..........................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATATATTATGTAGT-----TTGT--TGG..........................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GT--TGGTTGCCAATAAATACATAGCAAGT...................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
....TGCAACCATTAAGTGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
................GTGTAAAAATGCCATCAAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGTGAAT-GA-TAAA--------------AA--AGG-------A-----AAT---------GGA...................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
...........ATTAAGTGTAAAAATGCCATCAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................AAAATCGATTTTGTAGTGA..............................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................AAAATGCCATCAAACATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGAAGCATGTACG--AG..................1911.001000000000000000000100000000000000000000000000000000000000000000
...TTGCAACCATTAAGTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
.......................AATGCCATCAAACATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
....TGCAACCATTAAGTGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................A--ATTCGTA--TCGGTGGTGGT-------...............................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................GTAAAAATGCCATCAAACATGAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
............................................................GGT--TCCAA----GGTGCCA-TACA-----------A................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................AATGCCATCAAACATGAATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..............AAGTGTAAAAATGCCATCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...............AGTGTAAAAATGCCATCAAACATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
AAGTTGCAACCATTAAGTGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................C-----------------GGTTCC-----AATCCAATTGGTGGC............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................CAAACATGAATAATAAACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
AAGTTGCAACCATTAAGTTTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-TATGGTG-TG--------AAGCCA-TTTAAT-GAAATATAGTGATA-AAA-----A-AAATCGATTTTGTAGTGAATAA--TAAA---AAAAGAA---AAT--GAA-------AATAAAAATAAAGAAAATGGAAAATAGTGC-----------------ACGGATACCGTAAGCAATCGGATCC-----AATCCAATTGGTGGCAT--------------------A-A-GTTATG---------------TAGT----------------------------TTGT-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....GCAACCATTAAGTTTAAAAATGCCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................AAAATGCCATCAAACATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................TGCCATCAAACATGAATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................A-AAA-----A-AAATCGATTTTGTAGTGAAT............................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................TAAACTGTAAGT-TATGGTG-TG--------AAGCC..................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..................................................................................................................................................................................................TAGTGC-----------------ACGGATACCGTAA............................................................................................................................................................................................................................................1911.001000100
droGri2
AAGTTGCAACCATTAAGTGTAAAAATGCCATCAAACATGAATAATAAACTGTAAGT-AATGGTA--CCAA----GGAGCCA-TGCTA--A-------A---AA-AAA--AGCAAAAATCGATTTTGTAGTGAAAAA--TA----------------AA--GAG--------------------GAAATGGAAAATAGTGCACGGGTACC-GTA--GC--------------CAATCGGACCA-----AATCCAATTGGTGGCAA--------------------ATTAATTATGTAG--TTTGTTGT--TGGTTGCCAATAAAATCATGGCAAATTTTCTATAATA--GTGCAATAGTT---------TTAAGTGTAATATGTTAACTAA--TTTCGGA--TCGGTGTTGGTAAT----ATAACTGAAGAATTTAGCCTGAACGCCATATATATGAAATCATATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................AAAATGCCATCAAACATGAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
AAGTTGCAACCATTAAGTGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
............TTAAGTGTAAAAATGCCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droAna3
AATTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TATG---G-------AG--GA-AAAAGTGCC-AGTTCGATTTTGTAGTGTGAAGAAAAAAA--------A---AAT--GAGAAAATAAAAAAGAAAAG----------AAA--AGTGCGAAGGAGTTCGTA--ACAC-----------------GACCCC-----TTTC--ATTGGTGGCAT--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGTAATAGTT----------TTAGTGTAACCTGCTAAT-----TCGGGTACTGTGGTGTTGGT-------TT-----------TTTTCACGT-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.ATTTGCAACCATTAAGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002010010
....................GAAAATGCCATCCAATATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................GT-T---------------------TA-TATG---G-------AG--GA-AAAAGTG...................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........................................................................................................................................................................................................................................................C--ATTGGTGGCAT--------------------GTA---------GGCTTGGT..................................................................................................................................................................2311.001000010
.............................................................................................................................................................................................................AGTTCGTA--ACAC-----------------GACCCC-----TTTC--ATTGGT...............................................................................................................................................................................................................2811.001100000
....TGCAACCATTAAGTGTGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................................................................................................................................TTGTAATGGT----------------------------TTGTA--GTGTA.................................................................................................................2011.001000010
.............................................................................................................................................................................................................................................................ATTGGTGGCAT--------------------GTA---------GGCTTGGTTGT...............................................................................................................................................................2511.001001000
..........................................................................................................AAGTGCC-AGTTCGATTTTGT...................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................GAAAATGCCATCCAATATGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................AAATAAAAAAGAAAAG----------AA..................................................................................................................................................................................................................................................................................1860.171010000
droBip1
AATTTGAAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-T---------------------TA-TA--T--A-------AAG-GA-AAAAGTGCC-AGTTCGATTTTGTAGTGTGAA-----------AAAGAA---AAT--GAG-------AAAAGAAAAA----------AGAAAAGTGCTAGGGAGTTCGTA--ACAC-----------------GACCCC------TTCCAATTGGTGGCAT--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGTAATAGTT----------TTAGTGTAACCTGCTAAT-----TCGG------TGGTGTTGGT-------T------------TTTTCACGT-------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAATTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGCT-TCCTA-CTGGTCGCCA-CACAC--A-------A-GAGA-AAAAGTGCA--AGTCGATTTTGTAGTGCGAAGAA------------------AT--GAA-------A-----AATC---------AAAAATAGTGTGT-GGAGTC-GCAGTGCTC-----------------GACCCC-----TTTCCAATTGGTGGCTG--------------------------------GTCTTGGTTGTAGTGGT----------------------------TTGTA--GTGTAA--ATT----------TAAGTGTATCCCGCTAAT---------------CGGTGTTGGT-------TT-T--------TTTTTCACCTAC---------------------ATSizeHit CountTotal NormTotal
No Reads
droFic1
AAATTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTC-TCCAA-CTGGATGCCA-TACAC--A-------AAGAAA-AAAAGTGCA--AGTCGATTTTGTAGTGTGAAAA---A-------AGAAAGAAAA--GAG-------A-----AATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACCCC-----TCTCTAATTGGTGGCAA--------------------------------GGTTTGGTTGTGATGGT----------------------------TTGTA--GTGCTATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGGATA--ACGGTGTTGGT-------TTAT--------TTTTT------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGTTGCAACCATTAAAAGTGAAAATGCCTTCCAATATGAATAATAAACTGTAAGTTAATGGTT-TCCA--TTGGATGCCA-TATAC--A-------AAGAGA-AAAAGTGCA-TAGTCGATTTTGTAGTGAAAAGAAAAA-----------------------------A-----AATG----------A-AATAGTGCGAGGGAGTC-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAA--------------------GTA---------GGTTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TTAGTGTAACCTGCTAATATA--TCGTGTA--ACGGTGTTGGT-------TTAT--------TTTCTCACGT-------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAGTTGCAACCATTAAGTGTTAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AGTGGTC-TCCA-TTTGGATGCCA-TACAC--A-------AAGAAAAAAAAGTGCA-AACTCGATTTTGTAGTGCAA-GAAAGA-------AGAAAA-AAA--GAG-------A-----AATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAA--------------------ATA---------GGTTTGGTTGCAATGGT----------------------------TTGTA--GTGCAATAGTT----------TTAGTGTAACCTGCTAATAAA--TCGGGTA--ACGGTGTTGGT-------TTAT--------TTTCTCAC---------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAAAATGAATAATAAACTGTAAGT-AATGGCA-TCCGAGCTGGAGGCCA-TACAC--G-------AAGAGAGAAAAGTGCA-AAGTCGATTTTGTAGTGCCGAGAAAG--------AGAA---AAA--GAG-------A-----AATG----------AAAATAGTGCCAGGGAGTC-------CAC-----------------GACCCC-----TTTCCCATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGGGTA--ACGGTGTTGGT-------TCGC--------TCCCCCACGT-------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAGTTGCAACCATTAAAAGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAGTTGGACGCCA-TACAC--G-------AAGAGAAAAAAGTGCA-AAGTCGATTTTGTAGTGCAAAGAAAGA-------AGAAAG-AAA--GAGA------A-----AATG----------AAAATAGTGCG-GGGAGTC-------CAC-----------------GACCCC-----TTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGAGTA--ACGGTGTTGGT-------TTAT--------TTCCTCACGTAC---------------GC--ACACSizeHit CountTotal NormTotal
No Reads
droEug1
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCCAATTGGAGACCA-TACAC--G-------AAGAGAAAAAAGTGCT-AAGTCGATTTTGTAGTGCAAAGAA----------AGAA---AATGAGAA-------A-----AAAG----------AAAATAGTGCTAGGGAGTC-------CAC-----------------GACCCC-----TTTCAAATTGGCGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TTAGTGTAACCTGGTAATAAA--TCGAGTA--ACGGTGTTGGT-------TTAT--------TTTATAACGTAC-----------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTG-TCCAAAGCGGTTGCCA-TACAC--G-------ACGACA-AAAAGTGCA-AAGTCGATTTTGTAGTGCGAAGAATAAAA--AAAAGCA---AAA--GAG-------AAATGAAATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACTCCTTTCCTTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTTAAGTGTAGTATAAGTGTAACCTGCTAACAAA--TCGGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC-----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................T----------------------------TTGTA--GTGCAATAGTTAAGTG......................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................T-AATGGTG-TCCAAAGCGGTTGCCA-T...............................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
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........................................................................................................................................................................................................................................................TTCCAATTGGTGGCAA--------------------GT....................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCA---AAA--GAG-------AAATGAAATG----------AA..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................ATGCCATCCAATATGAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AC-----------------GACTCCTTTCCTTTCCAA....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AACCTGCTAACAAA--TCGGGTA--.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GGT----------------------------TTGTA--GTGCAATAGTTAA.........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................AGTCGATTTTGTAGTGCGAAGAA........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTGGTTGTAATGGT----------------------------TTGTA--GT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................AATGCCATCCAATATGAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGGT----------------------------TTGTA--GTGCAATAGTTAAGT.......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AATTGGTGGCAA--------------------GTA---------GGCTTGGTT.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTCCAATTGGTGGCAA--------------------GTA---------GG........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......CAACCATTAAGTGTGAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ATTGGTGGCAA--------------------GTA---------GGCTTGG...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................CTGTAAGT-AATGGTG-TCCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GGTGGCAA--------------------GTA---------GGCTTGGTT.................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................TGGCAA--------------------GTA---------GGCTTGGTTG................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GTAATGGT----------------------------TTGTA--GTGCAATAGT............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TA---------GGCTTGGTTGTAATGGT----------------------------T............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCAACCATTAAGTGTGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTAAGTGTGAAAATGCCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................AATAAACTGTAAGT-AATGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............TTAAGTGTGAAAATGCCATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ATAGTGCGAGGGAGTC-------CAC-----------------GA....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
droSim2
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACAC--G-------ACGACA-AAAAGTGCA-AAGTCGATTTTGTAGTGCGAAGAATAAAAAAAAAAGAA---AAA--GAG-------AAATGAAATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACTCCTTTCCTTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACATGCTAACAAA--TCTGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC---------------GC----ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................GAAAATGCCATCCAATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200000200000000000
...........................................................................................................................TTGTAGTGCGAAGAATAAAAA..................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
............................................................................................................................................................................................................................................................................................................TGGTTGTAATGGT----------------------------TTGTA--GTG...................................................................................................................2111.00100000000100000000
.........CCATTAAGTGTGAAAATGCCATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
................................................................................................................A-AAGTCGATTTTGTAGTGCGA............................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.............................................................................................................................................................................................................AGTC-------CAC-----------------GACTCCTTTCCT..........................................................................................................................................................................................................................1911.00100010000000000000
...................................................................................................GACA-AAAAGTGCA-AAGTCGATTTTG....................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTGTTGGT-------TGAT--------TTTCTCACG..........................2411.00101000000000000000
................................................................................................................................................................................................................................................................GGTGGCAA--------------------GTA---------GGCTTGGTTG................................................................................................................................................................2111.00100000000000001000
...............................................................................................................................................................................................................TC-------CAC-----------------GACTCCTTTCCTT.........................................................................................................................................................................................................................1811.00100001000000000000
...................................................................................................................................................................................................................................................................................................................AATGGT----------------------------TTGTA--GTGCAATAGT............................................................................................................2111.00100000000010000000
..........CATTAAGTGTGAAAATGCCATCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..........................................................................................................................................................................................................................................................................................................CTTGGTTGTAATGGT----------------------------TTGTA--G.....................................................................................................................2111.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGGT-------TGAT--------TA.................................1590.78700000006100000000
...........................................................................................................................................................................AATGAAATG----------AAAATAGT............................................................................................................................................................................................................................................................................1720.50100000000001000000
droSec2
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAAGCGGTTGCCA-TACAC--G-------ACGACA-AAAAGTGCA-AAGTCGATTTTGTAGTGCGAAGAATAAAA--AAAAGAA---AAA--GAG-------AAATGAAATG----------AAAATAGTGCGAGGGAGTC-------CAC-----------------GACTCCTTTCCTTTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACATGCTAACAAA--TCTGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC---------------GCATACGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
AAGTTGCAACCATTAAGTGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020
...........ATTAAGTGTGAAAATGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................TAATGGT----------------------------TTGTA--GTGCAA................................................................................................................1811.0010010
........................................................................................................................ATTTTGTAGTGCGAAGAATAAAA--AAAA.............................................................................................................................................................................................................................................................................................................................2711.0010100
AAGTTGCAACCATTAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................TG----------AAAATAGTGCGAGGGAGT..................................................................................................................................................................................................................................................................2011.0010001
............................................................................................................................................................................................................................................................................................GTA---------GGCTTGGTTGTAATGGT----------------------------T............................................................................................................................2111.0010001
..................................................................................................................................................................G-------AAATGAAATG----------AAAATAGTGCGAGGG.....................................................................................................................................................................................................................................................................2611.0010100
..................................................................................................................................................................................................................................................TTTCCTTTCCAATTGGTGGCA...........................................................................................................................................................................................................2111.0010001
droYak3
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACAC--G-------AGGAAA-AAAAGTGAA-AAGTCGATTTTGTAGTGCGAAGAATGAAAAAAAAAGAA---AAA--GAG-------A-----AATG----------AAAATAGTGCTAGGGAGTC-------CAC-----------------GACCCCTTTCCATTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAACAAA--TCGGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACTTAC---------------GCAGACGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................GAA-AAGTCGATTTTGTAGTGCGAAGA.........................................................................................................................................................................................................................................................................................................................................2613.00300010020000
.............................................................................................................................................................................................................................................................ATTGGTGGCAA--------------------GTA---------GGCTTGGT..................................................................................................................................................................2213.00301000020000
..............................................................................................................GAA-AAGTCGATTTTGTAGTGCGAAGAAT.......................................................................................................................................................................................................................................................................................................................................2812.00200000000002
................................................................................................................................................................................................................................................................................................................TGTAATGGT----------------------------TTGTA--GTGCA.................................................................................................................1912.00200000020000
.............................................................................................................................................................................................................................................................ATTGGTGGCAA--------------------GTA---------GGCTTGG...................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................ATG----------AAAATAGTGCTAGGGAGTC-------CAC-----------------......................................................................................................................................................................................................................................2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................AACCTGCTAACAAA--TCGGGTA--ACGGTGTT.........................................................2911.00100000010000
..GTTGCAACCATTAAGTGTGAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................................................................................................................................................................................................................GGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGT.........................................................................................................................2911.00100000010000
.....................................................................................................................................................GAA---AAA--GAG-------A-----AATG----------AAAATAGTGCTA........................................................................................................................................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................................................................................................GGCAA--------------------GTA---------GGCTTGGTTGTAAT............................................................................................................................................................2211.00100000010000
..........CATTAAGTGTGAAAATGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................CGATTTTGTAGTGCGAAGA.........................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................................A---------GGCTTGGTTGTAATGGT----------------------------T............................................................................................................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCTAACAAA--TCGGGTA--AC...............................................................2011.00100000010000
......................................................................................................................CGATTTTGTAGTGCGAAGAAT.......................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................................................................................................TTGTAGTGCGAAGAATGAAAAAAA...............................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................................................................................................GAA-AAGTCGATTTTGTAGTGCGAA...........................................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................AA--TCGGGTA--ACGGTGTTGGC-------...............................................2011.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................GTA--ACGGTGTTGGT-------TGAT--------T..................................1911.00100000010000
......................................................................................................................CGATTTTGTAGTGCGAAGAATGAAAAAA................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................AATGCCATCCAATATGAATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................................................................................................................TTGTAGTGCGAAGAATGAAA...................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................................................GT----------------------------TTGTA--GTGCAATAGTT----------TAAGT............................................................................................2311.00100000010000
..GTTGCAACCATTAAGTGTGAAAATGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.............................................................................................................................................................................................................................................................ATTGGTGGCAA--------------------GTA---------GGCTTGGTT.................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................GTGGCAA--------------------GTA---------GGCTTGGTTGTAATG...........................................................................................................................................................2511.00100000010000
...............................................................................................................AA-AAGTCGATTTTGTAGTGCGAA...........................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................A--TCGGGTA--ACGGTGTTGGT-------T..............................................2011.00100000010000
............................................................................................................................................................................................................................................................................................................TGGTTGTAATGGT----------------------------TTGTA--GTGCA.................................................................................................................2311.00100000010000
........................................................................................................................ATTTTGTAGTGCGAAGAATGAAAA..................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCTAACAAA--TCGGGTA--ACGGT............................................................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................A--ACGGTGTTGGT-------TGAT--------TTTC...............................2011.00100000010000
.............................................................................................................TGAA-AAGTCGATTTTGTAGTGC..............................................................................................................................................................................................................................................................................................................................................2211.00100000010000
AAGTTGCAACCATTAAGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................GATTTTGTAGTGCGAAGAATGAAAAAA................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................GGCAA--------------------GTA---------GGCTTGGTTGTAATG...........................................................................................................................................................2311.00100000010000
..................GTGAAAATGCCATCCAATATGAATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................................................................................................AGTGAA-AAGTCGATTTTGTAGTGCGA............................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
AAGTTGCAACCATTAAGTGTGAAAATGCCATCCAATATGAATAATAAACTGTAAGT-AATGGTA-TCCAAATTGGTTGCCA-TACAC--G-------ACGAGA-TAAAGTGCA-AAGTCGATTTTGTAGTGCGATGAAAAAAA-------AAAAATAA--GAG-------A-----AATG----------AAAATAGTGCGAGGGAGTT-------CAC-----------------GACTCCATTCCATTCCAATTGGTGGCAA--------------------GTA---------GGCTTGGTTGTAATGGT----------------------------TTGTA--GTGCAATAGTT----------TAAGTGTAACCTGCTAATAAA--TCGGGTA--ACGGTGTTGGT-------TGAT--------TTTCTCACGTAC---------------GCAGACGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................GGGTA--ACGGTGTTGGT-------TGAT--------T..................................2111.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................ATAAA--TCGGGTA--ACGGTGTTGG.......................................................2211.0011000000
...........ATTAAGTGTGAAAATGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
...............................................................................................................................................................................................................TT-------CAC-----------------GACTCCATTCCATTCCA.....................................................................................................................................................................................................................2211.0011000000
................................................................................A-TACAC--G-------ACGAGA-TAAAGT....................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.............................................................................................................................................................................................................................................................ATTGGTGGCAA--------------------GTA---------GGCTTG....................................................................................................................................................................2011.0010000010
AAGTTGCAACCATTAAGTGTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................................................................................................................................................................................................AGTGCGAGGGAGTT-------CAC-----------------GACTCC................................................................................................................................................................................................................................2311.0010000010
.....................................................................................................GA-TAAAGTGCA-AAGTCGAT........................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....TGCAACCATTAAGTGTGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGT-------TGAT--------TTTCTCAC...........................1811.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................A--ACGGTGTTGGT-------TGAT--------TT.................................1811.0010000010
.................................................................................................................................................................................................................................................................................................................GTAATGGT----------------------------TTGTA--GTGCAATA..............................................................................................................2111.0010000100
AAGTTGCAACCATTAAGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT--------TTTCTCACGTAC---------------GCAGAC..2211.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGCTAATAAA--TCGGGTA--ACGGT............................................................2311.0010000010
.....................................................................................................................................................................................................................................................................CAA--------------------GTA---------GGCTTGGTTGTA..............................................................................................................................................................1811.0010001000
............................................................GGTA-TCCAAATTGGTTGCC..................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
........................................................................................................................................................AAATAA--GAG-------A-----AATG----------AAAATAGT............................................................................................................................................................................................................................................................................2211.0010001000

Generated: 06/08/2015 at 03:33 PM