ID:

dpe_983

 Coordinate:

scaffold_2:592449-592599 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.5 -4.8 -4.7

Flybase annnotation

CDS [Dper\GL11026-cds]; exon [dper_GLEANR_11147:5]; intron [Dper\GL11026-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAACGAAACACTCCCAGCTTACTACTAATTTAGCGATTAAAGGGAGTTGCAATGAATATGTTCGTGATGATTGAACAGCATAAATCGTTGCTGCTGATACTTGCATACACTGGAACAGGGCGAGAATGCTTCTAGGATTCTCCGCCAAGATTTTACTATTTCGCATTAATTAATTTCGCATGTTTATGTTTTACTTTCAGGTATCACACACCCAACGTGGTCTACATCAAGACTGAAGATCCCGATTTGC
*******************************************************************************.........(((((.(((....((.((.....)).))))))))))..***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 V042
embryo
 M042
female body
 V111
male body		 V057
head
..............................................................................................................................................................................................................................CTACATCAAGACTGAAGATCCC....... 22 0 1 5.00 5 5 0 0 0 0
...............................................................................CATAAATCGTTGCTGCTGATACT..................................................................................................................................................... 23 0 1 3.00 3 2 0 1 0 0
.................................................................................................................................................................................................................................CATCAAGACTGAAGATCCC....... 19 0 1 2.00 2 2 0 0 0 0
........................................................ATATGTTCGTGATGATTGAAC.............................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................................................GTCTACATCAAGACTGAAGATCCC....... 24 0 1 2.00 2 2 0 0 0 0
................................................................................ATAAATCGTTGCTGCTGATA....................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0
............................................................GTTCGTGATGATTGAACAGC........................................................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0
........................................................ATATGTTCGTGATGATTGAACAG............................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0
...................................................AATGAATATGTTCGTGATGATTGAACAGC........................................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0
.......................................................................................GTTGCTGCTGATACTTGCATACACTG.......................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0
..............................................................................................................................................................................................................................CTACATCAAGACTGAAGATCCCG...... 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................ATCAAGACTGAAGATCCC....... 18 0 1 1.00 1 1 0 0 0 0
...............................................................................CATAAATCGTTGCTGCTGATACTTG................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
..............CCAGCTTACTACTAATTTAGC........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
..................................................................................AAATCGTTGCTGCTGATACTTGCATACA............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................................ACACTGGAACAGGGCGAGA............................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
.................................GCGATTAAAGGGAGTTGCAATGAATA................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0
...............................................................................CATAAATCGTTGCTGCTGATACTTGC.................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.............................................................TTCGTGATGATTGAACAGC........................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
...............................................................................................TGATACTTGCATACACTG.......................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
..........................................................................................GCTGCTGATACTTGCATACACTG.......................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0
................................................................GTGATGATTGAACAGCATAAATCGT.................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0
........................................AAGGGAGTTGCATTGGATCTGT............................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 1

Anti-sense strand reads

ATTTGCTTTGTGAGGGTCGAATGATGATTAAATCGCTAATTTCCCTCAACGTTACTTATACAAGCACTACTAACTTGTCGTATTTAGCAACGACGACTATGAACGTATGTGACCTTGTCCCGCTCTTACGAAGATCCTAAGAGGCGGTTCTAAAATGATAAAGCGTAATTAATTAAAGCGTACAAATACAAAATGAAAGTCCATAGTGTGTGGGTTGCACCAGATGTAGTTCTGACTTCTAGGGCTAAACG
*****************************************************************************************************************************.........(((((.(((....((.((.....)).))))))))))..******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V050
head
 M042
female body
 V111
male body
..................................................................................................................................................................................CGGACATATTCAAAATGAAAGT................................................... 22 3 1 1.00 1 1 0 0 0
..........................................................GACTAGCACTACTGACTTGTC............................................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0
.............................................................................................................................................................................................AAACTGGGAGTCCATAGT............................................ 18 3 20 0.10 2 0 0 2 0
.....................................................................................................................................................................................................AGTCGATAGTGTGCGCGTT................................... 19 3 16 0.06 1 1 0 0 0
................................................................................................................................................................................................ATGAAAGTCCCTATTGTTTG....................................... 20 3 19 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_2:592399-592649 - dpe_983 TAAACGAAACACTCCC-AGCTTACTACTAATTTAGCGATTAA-------AGGGAGTTGCAATGA-ATATGTTCGTGATGATTGAACAGCATAAATCGTTGCTGCTGATACTTGCATACACTGG-AACAGGGCGAGAATGCTTCTAGGATTCTCCGCCAAGATTTTACTAT-T---TCGCAT------TAA----TT------AATTTCG----------C------------------ATGT--------------------------------------TTATGTT----------TTACTTTCAGGTATCACACACCCAACGTGGTCTACATCAAGACTGAAGATCCCGATTTGC
dp5 3:407960-408210 - dps_906 TAAACGAAACACTCCC-AGCTTACTACTAATTTAGCGATTAA-------AGGGAGTTGCAATGA-ATATGTTCGTGATGATTGAACAGCATAAATCGTTGCTGCTGATACTTGCATACACTGG-AAAAGGGCGAGAATGCTTCTAGGATTCTCCGCAAAGATTTTACTAT-T---TCGCAT------TAA----TT------AATTTCG----------T------------------ATGT--------------------------------------TTATGTT----------TTACTTTCAGGTATCACACACCCAACGTGGTCTACATCAAGACTGAAGATCCCGATTTGC
droWil2 scf2_1100000004954:3252121-3252365 + dwi_3725 ATAATGAAACACTCCCAAGTTTACTACCAATTTAGCGATAATGGT---GAGGGAGATGCAATGAGAAATGTTCGTTATGATTGCAAAGACTAAGTCATAACTGCTGATAGTTGCAGACAAACT-TGTA--C-------------------------------------------------------------------------------------------TTAATCCATATCGGAATA-----AGACATTCT---TACAAATCAAAGCTGATCTTTAGAA-----ACGTTTTTTA--TTTTCTAGGTATCACACTCCCAATGTGGTCTATATTAAGACCGAAGATCCTGATTTGC
droVir3 scaffold_12875:19838040-19838291 + dvi_8031 TCAAACAATAAGGCCC-GATTTACTACCAATTTAGCGATTGATTCC---TGGGTTTTGCAATGT-GAATGTTCGTTCCGATTGTGGAACTTAAATCTGGACTGCTGATAGTTGCATACACACA-TAGT--TT--TT--------AA---------------------GATTAGTT---AGTCGATAAAGC------------------------------------------------CA-----AGACTTTTTTTTTAAGAAATACGGCTAATTTATTTATATGGT----------TTCTCTCTAGGTACCATACGCCCAACGTGGTCTACATCAAGACCGAAGATCCTGACTTGC
droMoj3 scaffold_6496:6366272-6366507 - TTAAAAAACCACGCCC-AATTTACTACCAATTTAGCGATTGTCTTCGAATGGGCGGTGCAATGT-AAATGTTCGTTATGATTTTGTAGACTAAATTTTAACTGCTGATAGTTGCATACAAACA-TAAA--CAC-----------GA---------------TTT--ATAT-ATAG---TATTTATA----------------TATATAA---------C-------------------ATTTATAAT---------------------------A------------TC-TTTATTCATATTTTCAGGTATCACACTCCAAACGTTGTCTACATTAAGACCGAGGATCCTGATTTGC
droGri2 scaffold_15245:18186714-18186961 + CACAC--CAAACGCCC-AACTTACTACCAATTTAGCGATTGTTTCCTTTTGGGAAGTGCAATGT-GAATGTTCGTTACGATTTTCTAGACTAAATCGCGACTGCTGATAGTTGCATACAAGCA-TAGT--TCTTAT--------GA---------------------TCAACAGG---GAG-----TGACTATT-------AAATGTACCTTTCACTTGTATTTATT-----------CT-----CT---------------------------G------------TC-TTTCTCT--CTCTTTAGGTACCATACGCCCAATGTGGTCTACATCAAAACCGAAGATCCGGACTTAC
droBip1 scf7180000396759:1638516-1638736 + ACAACGATGAGCTCCC-AGTTTACTACCAATATTGCGATAAAA-----ACGGGAGCTGCAATGA-GAATGTCCGTAGCGATTGTGGATTTTAAATCGATACTGCTGATAGTTGCATACATTA-----------------------------------------------------------CCACATAAA----TTACATAAAATATAGTTTTAAATAC-------------------TA-----TT---------------------------T------------TA-TTATCCT--GGTTTCAGGTATCACACACCAAACGTGGTCTACATCAAGACCGAAGATCCTGATTTGC
droKik1 scf7180000302367:402978-403191 + TAAACGTCCTGCTCCCCAGCTTACTACCAATTTTGCGATTAA-------AGGGAGCTGCAATGA-TAATGTTCGTGGCGATTGAAGAGATTAGATCGTGACTGCTGATAGTTGCATACATTTTCGACG--CAC-----------------------------------CTTAAAG---GATTCACAATAA------------------------------------------------TA-----AA---------------------------A------------TA-CTTGTCC--CATTGCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGATTTGC
droFic1 scf7180000453809:444716-444933 - ATAACGTCGAGCTCCC-AGCTTACTACCAATTTTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACATA-ATAT--CCCCTT--------AA---------------------GCTATGGG---AATGAAAATAAC------------------------------------------------CA-----TT---------------------------G------------AT-TTCTCAT--AATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGATCTGC
droEle1 scf7180000491214:3582741-3582959 - AAAAGGTCGAGCTCCC-AGCTTACTACCAATATTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACTTA-AATT--CATTTC--------AA---------------------GAAACAAG---AATTTTAA----------------------------GTAAC-------------------CA-----AT---------------------------G------------GC-TTTCCTC--CATTTCAGGTATCACACACCCAACGTGGTCTATATCAAGACCGAAGATCCAGATCTGC
droRho1 scf7180000779932:487712-487930 - AAAACGTCGAGCTCCC-AGCTTACTACCAATTTTGCGATAAA-------AGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CAATTG--------AA---------------------GCTAGAAG---GATTTTGA----------------------------ATAAC-------------------CA-----AC---------------------------G------------GC-TTTCTTC--TATTTCAGGTATCACACTCCAAACGTGGTCTATATCAAGACCGAAGATCCCGATTTGC
droBia1 scf7180000302292:864382-864598 - AAAACGTCGAGCTCCC-AGCTTACTACAAATTTTGCGATAAA-------CGGGAGCTGCAATGA--TATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACTTT-GTTT--CACCTC--------AA---------------------TCAAAGAG---GATCCAAATAAC------------------------------------------------CA-----AT---------------------------G------------TC-CTTTTTC--CATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCTGATTTGC
droTak1 scf7180000415260:193392-193601 + GAAACGTCGAGCTCCC-----TACTACAAA---TGCGATAAA-------CGGGAGCTGCAATC--CTATGTTCGTGGCGATTGTTAAGAATAAATCGCGACTGCTGATAGTTGCATACACTTA-TAGT--CACCTA--------AA---------------------ATTACGAA---GATCAAAATAAC------------------------------------------------AT-----TT---------------------------G------------GT-TTTTATC--CTTTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGACTTGC
droEug1 scf7180000409462:415132-415349 + AAAACGTCGAGCTCCC-AGCTTACTACCAATTTTGCGATAAA-------CGGGAGCTGCAATAA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACTTA-AACT--CACATG--------AA---------------------CCTATGAG---GACGTATATAAC------------------------------------------------CG-----AT---------------------------A------------TA-CTTTATT--AATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCTGATTTGC
dm3 chr2R:8048522-8048744 - AAAACGACGAGCTCCC-AGGTTACTGCCAAATTTGCGATAAA------ACGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATATA-AACT--CATTTG--------TA---------------------GCTTAGAG---GATCCACATGACCACA--------------------------------------------TG-----AT---------------------------G------------TA-CTTTGTC--TATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGATCTGC
droSim2 2r:8752935-8753153 - AAAACGACGAGCTCCC-AGGTTACTGCCAAATTTGCGATAAA------ACGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATTAA-AACT--CACTTA--------AA---------------------GCTTAAAG---GATCCACATGAC------------------------------------------------CG-----AT---------------------------G------------TA-CTTTGTC--TTTTTCAGGTATCACACTCCCAACGTGGTCTATATCAAGACCGAAGATCCCGATTTGC
droSec2 scaffold_1:5593590-5593808 - AAAACGACGAGCTCCC-AGGTTACTGCCAAATTTGCGATAAA------ACGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CACTTA--------AA---------------------GCTTAAAG---GATCCACATGAC------------------------------------------------CG-----AT---------------------------G------------TA-CTTTGTC--TTTTTCAGGTATCACACTCCCAACGTGGTCTATATCAAGACCGAAGATCCCGATCTGC
droYak3 2R:8902593-8902809 + AAAACGACGAGCTTCC-AGGATACTGTCAAATTTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTCAGAATTAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CACATG--------TA---------------------TCT-AGAG---GATCCACATAAC------------------------------------------------CG-----AT---------------------------A------------TA-CTTTGTC--TACTTTAGGTATCACACTCCCAACGTGGTCTACATTAAGACCGAAGACCCCGATCTGC
droEre2 scaffold_4845:17745482-17745699 + AAAACGACGAGCTCTC-AGGTTACTGCCAAATTTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CACTTG--------AA---------------------GCTTAGAG---GATCCACATAAC------------------------------------------------CG-----AT---------------------------G------------TA-CTGTGTC--TATTACAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGACCCTGATTTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
TAAACGAAACACTCCC-AGCTTACTACTAATTTAGCGATTAA-------AGGGAGTTGCAATGA-ATATGTTCGTGATGATTGAACAGCATAAATCGTTGCTGCTGATACTTGCATACACTGG-AACAGGGCGAGAATGCTTCTAGGATTCTCCGCCAAGATTTTACTAT-T---TCGCAT------TAA----TT------AATTTCG----------C------------------ATGT--------------------------------------TTATGTT----------TTACTTTCAGGTATCACACACCCAACGTGGTCTACATCAAGACTGAAGATCCCGATTTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................CTACATCAAGACTGAAGATCCC.......2215.005500000
........................................................................................CATAAATCGTTGCTGCTGATACT......................................................................................................................................................................................................................................................2313.003210000
...........................................................................................................................................................................................................................................................................................................................................CATCAAGACTGAAGATCCC.......1912.002200000
.................................................................ATATGTTCGTGATGATTGAAC...............................................................................................................................................................................................................................................................................2112.002200000
......................................................................................................................................................................................................................................................................................................................................GTCTACATCAAGACTGAAGATCCC.......2412.002200000
.........................................................................................ATAAATCGTTGCTGCTGATA........................................................................................................................................................................................................................................................2012.002200000
.....................................................................GTTCGTGATGATTGAACAGC............................................................................................................................................................................................................................................................................2012.002101000
.................................................................ATATGTTCGTGATGATTGAACAG.............................................................................................................................................................................................................................................................................2312.002200000
...........................................................AATGA-ATATGTTCGTGATGATTGAACAGC............................................................................................................................................................................................................................................................................2912.002200000
................................................................................................GTTGCTGCTGATACTTGCATACACTG...........................................................................................................................................................................................................................................2612.002020000
........................................................................................................................................................................................................................................................................................................................................CTACATCAAGACTGAAGATCCCG......2311.001100000
............................................................................................................................................................................................................................................................................................................................................ATCAAGACTGAAGATCCC.......1811.001100000
........................................................................................CATAAATCGTTGCTGCTGATACTTG....................................................................................................................................................................................................................................................2511.001001000
..............CC-AGCTTACTACTAATTTAGC.................................................................................................................................................................................................................................................................................................................................2111.001001000
...........................................................................................AAATCGTTGCTGCTGATACTTGCATACA..............................................................................................................................................................................................................................................2811.001100000
....................................................................................................................ACACTGG-AACAGGGCGAGA.............................................................................................................................................................................................................................1911.001001000
..................................GCGATTAA-------AGGGAGTTGCAATGA-ATA.................................................................................................................................................................................................................................................................................................2611.001000001
........................................................................................CATAAATCGTTGCTGCTGATACTTGC...................................................................................................................................................................................................................................................2611.001100000
......................................................................TTCGTGATGATTGAACAGC............................................................................................................................................................................................................................................................................1911.001001000
........................................................................................................TGATACTTGCATACACTG...........................................................................................................................................................................................................................................1811.001100000
...................................................................................................GCTGCTGATACTTGCATACACTG...........................................................................................................................................................................................................................................2311.001010000
.........................................................................GTGATGATTGAACAGCATAAATCGT...................................................................................................................................................................................................................................................................2511.001000001
dp5
TAAACGAAACACTCCC-AGCTTACTACTAATTTAGCGATTAA-------AGGGAGTTGCAATGA-ATATGTTCGTGATGATTGAACAGCATAAATCGTTGCTGCTGATACTTGCATACACTGG-AAAAGGGCGAGAATGCTTCTAGGATTCTCCGCAAAGATTTTACTAT-T---TCGCAT------TAA----TT------AATTTCG----------T------------------ATGT--------------------------------------TTATGTT----------TTACTTTCAGGTATCACACACCCAACGTGGTCTACATCAAGACTGAAGATCCCGATTTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................TGCATACACTGG-AAAAGGG..................................................................................................................................................................................................................................1913.0030100200000
..................................................................................................TGCTGCTGATACTTGCATACACTG...........................................................................................................................................................................................................................................2413.0030300000000
........................................................................................................................................................................................................................................................................................................................................CTACATCAAGACTGAAGATCCC.......2212.0020020000000
..............................................................................................................TTGCATACACTGG-AAAAGGG..................................................................................................................................................................................................................................2012.0020100001000
................................................................................................GTTGCTGCTGATACTTGCATACACTGG-.........................................................................................................................................................................................................................................2711.0010000000001
.........................................A-------AGGGAGTTGCAATGA-ATT.................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................ATTAA-------AGGGAGTTGCAATGA-AT..................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................AA-------AGGGAGTTGCAATGA-A...................................................................................................................................................................................................................................................................................................1811.0010100000000
........................................AA-------AGGGAGTTGCAATGA-AT..................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................AATCGTTGCTGCTGATACTTGC...................................................................................................................................................................................................................................................2211.0010010000000
.....................................................................GTTCGTGATGATTGAACAGCAT..........................................................................................................................................................................................................................................................................2211.0010000000010
.....................................................................GTTCGTGATGATTGAACAGCATA.........................................................................................................................................................................................................................................................................2311.0010010000000
...................................................................................................GCTGCTGATACTTGCATACACTG...........................................................................................................................................................................................................................................2311.0010001000000
.............................................................................................................CTTGCATACACTGG-AAAAGGA..................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................ACGTGGTCTACATCAAGACTGAAGAT..........2611.0010100000000
...............................................................................................CGTTGCTGCTGATACTTGCATACACTGG-.........................................................................................................................................................................................................................................2811.0010010000000
.....................................................................GTTCGTGATGATTGAACAGC............................................................................................................................................................................................................................................................................2011.0010010000000
...................................................................................................GCTGCTGATACTTGCATACACTGG-.........................................................................................................................................................................................................................................2411.0010000000001
...............................................................................................................TGCATACACTGG-AAAAGGC..................................................................................................................................................................................................................................1920.5010010000000
droWil2
ATAATGAAACACTCCCAAGTTTACTACCAATTTAGCGATAATGGT---GAGGGAGATGCAATGAGAAATGTTCGTTATGATTGCAAAGACTAAGTCATAACTGCTGATAGTTGCAGACAAACT-TGTA--C-------------------------------------------------------------------------------------------TTAATCCATATCGGAATA-----AGACATTCT---TACAAATCAAAGCTGATCTTTAGAA-----ACGTTTTTTA--TTTTCTAGGTATCACACTCCCAATGTGGTCTATATTAAGACCGAAGATCCTGATTTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................TGATAGTTGCAGACAAAC...........................................................................................................................................................................................................................................1814.00400031
.......................................AATGGT---GAGGGAGATGCAATGAGAAAT................................................................................................................................................................................................................................................................................................2713.00300210
.......................................................ATGCAATGAGAAATGTTCGTTATGATT...................................................................................................................................................................................................................................................................................2712.00220000
........................................................................................................................................................................................................................................................................................................................................CTATATTAAGACCGAAGATCCT.......2211.00100100
....................................GATAATGGT---GAGGGAGATGCAATGAGA...................................................................................................................................................................................................................................................................................................2711.00100100
..............................................................................GATTGCAAAGACTAAGTCATAACTGC.............................................................................................................................................................................................................................................................2611.00100010
.......................................................ATGCAATGAGAAATGTTCGTTATGAT....................................................................................................................................................................................................................................................................................2611.00110000
...........................................................AATGAGAAATGTTCGTTATGAT....................................................................................................................................................................................................................................................................................2211.00100010
.....................................................AGATGCAATGAGAAATGTTCGTT.........................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................ACTGCTGATAGTTGCAGACAAAC...........................................................................................................................................................................................................................................2311.00100010
..........................................GGT---GAGGGAGATGCAATGAGAAAT................................................................................................................................................................................................................................................................................................2411.00100100
...................................................................ATGTTCGTTATGATTGCAAAGACTA.........................................................................................................................................................................................................................................................................2511.00100010
..........................................GGT---GAGGGAGATGCAATG......................................................................................................................................................................................................................................................................................................1811.00100010
.......................................AATGGT---GAGGGAGATGCAATGAG....................................................................................................................................................................................................................................................................................................2311.00100100
....................................GATAATGGT---GAGGGAGATGCAATGAG....................................................................................................................................................................................................................................................................................................2611.00100100
............................................T---GAGGGAGATGCAATGAGAA..................................................................................................................................................................................................................................................................................................2011.00100010
............................................T---GAGGGAGATGCAATGAGA...................................................................................................................................................................................................................................................................................................1911.00100001
.......................................................................TCGTTATGATTGCAAAGACTAAGT......................................................................................................................................................................................................................................................................2411.00100010
....................................................................................AAAGACTAAGTCATAACTGCTGAT.........................................................................................................................................................................................................................................................2411.00101000
...................................................................................................................................................................................................................................................................................................................................................CCGAAGATCCTGATTTGC1811.00100010
..............................................................GAGAAATGTTCGTTATGATTG..................................................................................................................................................................................................................................................................................2111.00100100
..........................................GGT---GAGGGAGATGCAATGAGAAA.................................................................................................................................................................................................................................................................................................2311.00100100
.....................................................................GTTCGTTATGATTGCAAAGACTAAGTCAT...................................................................................................................................................................................................................................................................2911.00110000
.......................................................ATGCAATGAGAAATGTTCGT..........................................................................................................................................................................................................................................................................................2011.00100100
.........................ACCAATTTAGCGATAATGGT---GAGGGA...............................................................................................................................................................................................................................................................................................................2611.00100100
...........................................................................TATGATTGCAAAGACTAAGT......................................................................................................................................................................................................................................................................2011.00100100
...................................CGATAATGGT---GAGGGAGATGCAATGAG....................................................................................................................................................................................................................................................................................................2711.00100100
.................................AGCGATAATGGT---GAGGGAGATGC..........................................................................................................................................................................................................................................................................................................2311.00100100
..............................................................................GATTGCAAAGACTAAGTCAT...................................................................................................................................................................................................................................................................2011.00100100
.........................................TGGT---GAGGGAGATGCAATGAGAAA.................................................................................................................................................................................................................................................................................................2411.00100001
......................................................GATGCAATGAGAAATGTTCGTTATGAT....................................................................................................................................................................................................................................................................................2711.00100100
.......................................AATGGT---GAGGGAGATGCAATGAGA...................................................................................................................................................................................................................................................................................................2411.00100010
...........................................................AATGAGAAATGTTCGTTATGATTG..................................................................................................................................................................................................................................................................................2411.00100010
droVir3
TCAAACAATAAGGCCC-GATTTACTACCAATTTAGCGATTGATTCC---TGGGTTTTGCAATGT-GAATGTTCGTTCCGATTGTGGAACTTAAATCTGGACTGCTGATAGTTGCATACACACA-TAGT--TT--TT--------AA---------------------GATTAGTT---AGTCGATAAAGC------------------------------------------------CA-----AGACTTTTTTTTTAAGAAATACGGCTAATTTATTTATATGGT----------TTCTCTCTAGGTACCATACGCCCAACGTGGTCTACATCAAGACCGAAGATCCTGACTTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................CTGGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................27124.00240010000000000000000000000000000000000000000000000000000000000023
................................................................................................TGGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................2619.009000000000000000000000000000000000000000000000000000000000000009
..............................................................................................TCTGGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................2814.004001000000000000000000000000000000000000000000000000000010000002
....................................................................TGTTCGTTCCGATTGTGGAAC............................................................................................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000003
..................................................................................................GACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................2413.003003000000000000000000000000000000000000000000000000000000000000
.......................................................TTGCAATGT-GAATGTTCGTTCC.......................................................................................................................................................................................................................................................................................2212.002000000000000000000000000100000000000000000000000000000000000010
.................................................................................TGTGGAACTTAAATCTGGACTGCTGATAGTTGCATACACACA-.........................................................................................................................................................................................................................................4212.002000000000000000000000000000000000000000000000000000000011000000
.....................TACTACCAATTTAGCGATTG............................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................CTTAAATCTGGACTGCTGATAGTTGCATACACACA-.........................................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000010000000
.....................................................................GTTCGTTCCGATTGTGGC..............................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000001
................................................................................TTGTGGAACTTAAATCTGGACT...............................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................GTTTTGCAATGT-GAATGTTCGTTCC.......................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................AATCTGGACTGCTGATAGTTGCATACACACA-.........................................................................................................................................................................................................................................3111.001000000000000000000000000000000000000000000000000000000010000000
.......................................................................................ACTTAAATCTGGACTGCTGATAGT......................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.CAAACAATAAGGCCC-GAT.................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................CTGATAGTTGCATACACACA-.........................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000010000000000
.................GATTTACTACCAATTTAGCGATT.............................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CCGAAGATCCTGACTTGC1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................GTTCGTTCCGATTGTGGA..............................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000001
.........................................ATTCC---TGGGTTTTGCAATGT-GAAT................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
......AATAAGGCCC-GATTTACTACCAATT.....................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................TTGATTCC---TGGGTTTTGC..........................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................CGATTGTGGAACTTAAATCTGGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................4511.001000000000000000000000000000000000000000000000000000000010000000
........................................GATTCC---TGGGTTTTGCAATGT-GAAT................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ATACGCCCAACGTGGTCTACATCA.....................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................TACTACCAATTTAGCGAT..............................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................GTTCGTTCCGATTGTGGAAC............................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................................................ACATCAAGACCGAAGATCCTGA.....2211.001000000000000010000000000000000000000000000000000000000000000000
..............................................................GT-GAATGTTCGTTCCGATTGTGGAAC............................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................................AACGTGGTCTACATCAAGAC.................2011.001000100000000000000000000000000000000000000000000000000000000000
....................................................................TGTTCGTTCCGATTGTGG...............................................................................................................................................................................................................................................................................1811.001000000000001000000000000000000000000000000000000000000000000000
......................................................TTTGCAATGT-GAATGTTCGTTCC.......................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
..................ATTTACTACCAATTTAGCGATT.............................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................CTTAAATCTGGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000000000000010000000
.................................................................................................GGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
.....................................ATTGATTCC---TGGGTTTTGCAATGT-GAAT................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................TTAAATCTGGACTGCTGATAGTTGCATACACA............................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000000000010000000
...............................................................................................CTGGACTGCTGATAGTTGCATACACACA-.........................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................TGTGGAACTTAAATCTGGACTGCTGATAGTTGCATACACAC...........................................................................................................................................................................................................................................4111.001000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................TACATCAAGACCGAAGATCCTGACT...2511.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................AACTTAAATCTGGACTGCTGATAGTTGCATACACA............................................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000010000000
...............................................................................................CTGGACTGCTGATAGTTGCA..................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.......................................TGATTCC---TGGGTTTTGCAATGT-GAAT................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................ACTTAAATCTGGACTGCTGATAGTTGCATACACACA-.........................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................TGCATACACACA-TAGT--TT--TT--------.....................................................................................................................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................TAGTTGCATACACAC...........................................................................................................................................................................................................................................1550.201000000000000000000000000000000000000000000000000000000000100000
droMoj3
TTAAAAAACCACGCCC-AATTTACTACCAATTTAGCGATTGTCTTCGAATGGGCGGTGCAATGT-AAATGTTCGTTATGATTTTGTAGACTAAATTTTAACTGCTGATAGTTGCATACAAACA-TAAA--CAC-----------GA---------------TTT--ATAT-ATAG---TATTTATA----------------TATATAA---------C-------------------ATTTATAAT---------------------------A------------TC-TTTATTCATATTTTCAGGTATCACACTCCAAACGTTGTCTACATTAAGACCGAGGATCCTGATTTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................AACTGCTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................24118.00181400040
...................................................................................................ACTGCTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................2313.003300000
..............................................................................................TTTTAACTGCTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................2812.002200000
.......................................................................................................CTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................1912.002200000
....................................................................................................CTGCTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................2212.002200000
.......................................................GTGCAATGT-AAATGTTCGTTATGATT...................................................................................................................................................................................................................................................................................2612.002000002
......................................................................................................GCTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................2012.002200000
........................................................TGCAATGT-AAATGTTCGTTATGA.....................................................................................................................................................................................................................................................................................2311.001100000
...........................................TTCGAATGGGCGGTGCAATGT-....................................................................................................................................................................................................................................................................................................2111.001100000
..........................................................CAATGT-AAATGTTCGTTATGA.....................................................................................................................................................................................................................................................................................2111.001100000
...AAAAACCACGCCC-AATTTACTACC.........................................................................................................................................................................................................................................................................................................................................2411.001100000
...........................................................AATGT-AAATGTTCGTTATGA.....................................................................................................................................................................................................................................................................................2011.001100000
.......ACCACGCCC-AATTTACTACC.........................................................................................................................................................................................................................................................................................................................................2011.001100000
TTAAAAAACCACGCCC-AATTTACTACC.........................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................TAGACTAAATTTTAACTGC.............................................................................................................................................................................................................................................................1911.001100000
.......................................................GTGCAATGT-AAATGTTCGTT.........................................................................................................................................................................................................................................................................................2011.001000001
..................................................................................................AACTGCTGATAGTTGCATACA..............................................................................................................................................................................................................................................2111.001100000
.................................................................................................TAACTGCTGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................TACATTAAGACCGAGGATCC........2011.001000010
....................................................................................GTAGACTAAATTTTAACTGCTG...........................................................................................................................................................................................................................................................2211.001100000
........................................................................................ACTAAATTTTAACTGCTGATAGTTG....................................................................................................................................................................................................................................................2511.001100000
........................................................TGCAATGT-AAATGTTCGTT.........................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................GTAGACTAAATTTTAACTGC.............................................................................................................................................................................................................................................................2011.001100000
.................................................................................................TAACTGCTGATAGTTGCATACA..............................................................................................................................................................................................................................................2211.001100000
.........................................................................................CTAAATTTTAACTGCTGATAGTTG....................................................................................................................................................................................................................................................2411.001100000
.......................................................GTGCAATGT-AAATGTTCGTTATGA.....................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................TGATAGTTGCATACAAAC...........................................................................................................................................................................................................................................1811.001001000
.................................................................................................TAACTGCTGATAGTTGCATACAAACA-TAA......................................................................................................................................................................................................................................2911.001100000
.........................................................GCAATGT-AAATGTTCGTTATGA.....................................................................................................................................................................................................................................................................................2211.001100000
..............................TTTAGCGATTGTCTTCGAATGGGC...............................................................................................................................................................................................................................................................................................................2411.001100000
.......................................TGTCTTCGAATGGGCGGTGCAAT.......................................................................................................................................................................................................................................................................................................2311.001001000
...............................................................................................TTTAACTGCTGATAGTTGC...................................................................................................................................................................................................................................................1911.001100000
....AAAACCACGCCC-AATTTACTACC.........................................................................................................................................................................................................................................................................................................................................2311.001000010
................................................................................TTTTGTAGACTAAATTTTAACTGC.............................................................................................................................................................................................................................................................2411.001100000
................................................................................................TTAACTGCTGATAGTTGC...................................................................................................................................................................................................................................................1820.501100000
droGri2
CACAC--CAAACGCCC-AACTTACTACCAATTTAGCGATTGTTTCCTTTTGGGAAGTGCAATGT-GAATGTTCGTTACGATTTTCTAGACTAAATCGCGACTGCTGATAGTTGCATACAAGCA-TAGT--TCTTAT--------GA---------------------TCAACAGG---GAG-----TGACTATT-------AAATGTACCTTTCACTTGTATTTATT-----------CT-----CT---------------------------G------------TC-TTTCTCT--CTCTTTAGGTACCATACGCCCAATGTGGTCTACATCAAAACCGAAGATCCGGACTTACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................ACCATACGCCCAATGTGGTC............................2011.00110
.....................................................................GTTCGTTACGATTTTCTAGA............................................................................................................................................................................................................................................................................2011.00110
droBip1
ACAACGATGAGCTCCC-AGTTTACTACCAATATTGCGATAAAA-----ACGGGAGCTGCAATGA-GAATGTCCGTAGCGATTGTGGATTTTAAATCGATACTGCTGATAGTTGCATACATTA-----------------------------------------------------------CCACATAAA----TTACATAAAATATAGTTTTAAATAC-------------------TA-----TT---------------------------T------------TA-TTATCCT--GGTTTCAGGTATCACACACCAAACGTGGTCTACATCAAGACCGAAGATCCTGATTTGCSizeHit CountTotal NormTotal
No Reads
droKik1
TAAACGTCCTGCTCCCCAGCTTACTACCAATTTTGCGATTAA-------AGGGAGCTGCAATGA-TAATGTTCGTGGCGATTGAAGAGATTAGATCGTGACTGCTGATAGTTGCATACATTTTCGACG--CAC-----------------------------------CTTAAAG---GATTCACAATAA------------------------------------------------TA-----AA---------------------------A------------TA-CTTGTCC--CATTGCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGATTTGCSizeHit CountTotal NormTotal
No Reads
droFic1
ATAACGTCGAGCTCCC-AGCTTACTACCAATTTTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACATA-ATAT--CCCCTT--------AA---------------------GCTATGGG---AATGAAAATAAC------------------------------------------------CA-----TT---------------------------G------------AT-TTCTCAT--AATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGATCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
AAAAGGTCGAGCTCCC-AGCTTACTACCAATATTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACTTA-AATT--CATTTC--------AA---------------------GAAACAAG---AATTTTAA----------------------------GTAAC-------------------CA-----AT---------------------------G------------GC-TTTCCTC--CATTTCAGGTATCACACACCCAACGTGGTCTATATCAAGACCGAAGATCCAGATCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
AAAACGTCGAGCTCCC-AGCTTACTACCAATTTTGCGATAAA-------AGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CAATTG--------AA---------------------GCTAGAAG---GATTTTGA----------------------------ATAAC-------------------CA-----AC---------------------------G------------GC-TTTCTTC--TATTTCAGGTATCACACTCCAAACGTGGTCTATATCAAGACCGAAGATCCCGATTTGCSizeHit CountTotal NormTotal
No Reads
droBia1
AAAACGTCGAGCTCCC-AGCTTACTACAAATTTTGCGATAAA-------CGGGAGCTGCAATGA--TATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACTTT-GTTT--CACCTC--------AA---------------------TCAAAGAG---GATCCAAATAAC------------------------------------------------CA-----AT---------------------------G------------TC-CTTTTTC--CATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCTGATTTGCSizeHit CountTotal NormTotal
No Reads
droTak1
GAAACGTCGAGCTCCC-----TACTACAAA---TGCGATAAA-------CGGGAGCTGCAATC--CTATGTTCGTGGCGATTGTTAAGAATAAATCGCGACTGCTGATAGTTGCATACACTTA-TAGT--CACCTA--------AA---------------------ATTACGAA---GATCAAAATAAC------------------------------------------------AT-----TT---------------------------G------------GT-TTTTATC--CTTTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGACTTGCSizeHit CountTotal NormTotal
No Reads
droEug1
AAAACGTCGAGCTCCC-AGCTTACTACCAATTTTGCGATAAA-------CGGGAGCTGCAATAA-ATATGTTCGTGGCGATTGTTAAGAATAAATCGTGACTGCTGATAGTTGCATACACTTA-AACT--CACATG--------AA---------------------CCTATGAG---GACGTATATAAC------------------------------------------------CG-----AT---------------------------A------------TA-CTTTATT--AATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCTGATTTGCSizeHit CountTotal NormTotal
No Reads
dm3
AAAACGACGAGCTCCC-AGGTTACTGCCAAATTTGCGATAAA------ACGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATATA-AACT--CATTTG--------TA---------------------GCTTAGAG---GATCCACATGACCACA--------------------------------------------TG-----AT---------------------------G------------TA-CTTTGTC--TATTTCAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGATCCCGATCTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................GTGACTGCTGATAGTTGCATACATAT...........................................................................................................................................................................................................................................26124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008050107100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AAA------ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................21123.00230000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000000000001003000402000000000000000000000000000000000000100000000000000000000000000000000040000000000000000010000000000000
........................................AA------ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................20119.00190000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000001001000302000000000000000000000000000000000000100000000000000000000000100000000010010000000000000000000000001000
.........................................A------ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................19118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200002000102000000000000000000000000000000000000000000000000000010000000300200000000000001000000000000000000000000
...............................................................................................CGTGACTGCTGATAGTTGCATACATAT...........................................................................................................................................................................................................................................27117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120101011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................18116.00160000000000000000000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000302100000000000000000000000000000000000010000000000000000000000200010000000000000000000000000000000000000
.........................................A------ACGGGAGCTGCAATGA-A...................................................................................................................................................................................................................................................................................................18116.00160000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000103000000000000000000000100000000000000000000000000000000000000200110100000000000000000000000000000000000
........................................AA------ACGGGAGCTGCAATGA-A...................................................................................................................................................................................................................................................................................................19116.00160000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000002000501000000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000001000000
.......................................AAA------ACGGGAGCTGCAATGA-A...................................................................................................................................................................................................................................................................................................20114.00140000000000000000000000010000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000010000000000000000000000000000000000000000000000060000001000000000000000000000000
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...................................................................................................ACTGCTGATAGTTGCATACATAT...........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AATGA-ATATGTTCGTGGC.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GTGGCGATTGTTAAGAATTAA.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CTCCCAACGTGGTCTACATC......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CAAATTTGCGATAAA------ACGG.................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................GATAAA------ACGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GCATACATATA-AACT--CATTTG--------TA---------------------G.............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AATTTGCGATAAA------ACGGGAGCTGCA.........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACACTCCCAACGTGGTCTACATCAA....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CTACATCAAGACCGAAGA...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................GGCGATTGTTAAGAATTAAT......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GCTGATAGTTGCATACATAT...........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TAATCGTGACTGCTGATA........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AA------ACGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AATTAATCGTGACTGCTGATAGTT.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................A------ACGGGAGCTGCAATGA-ATAC................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGCATACATATA-AACT--CATTTG--------.....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCTGCAATGA-ATATGTTCGT..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATTTGCGATAAA------ACGGGAG..............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................TGCGATAAA------ACGGGAGCTGCA.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................AAGAATTAATCGTGACTGCTGATAGT......................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................ATTAATCGTGACTGCTGATAGTTGCAT.................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCTCCC-AGGTTACTGCCA........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCGATAAA------ACGGGAGCTGCAATG......................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CGTGGCGATTGTTAAGAATTAATCG....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
AAAACGACGAGCTCCC-AGGTTACTGCCAAATTTGCGATAAA------ACGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATTAA-AACT--CACTTA--------AA---------------------GCTTAAAG---GATCCACATGAC------------------------------------------------CG-----AT---------------------------G------------TA-CTTTGTC--TTTTTCAGGTATCACACTCCCAACGTGGTCTATATCAAGACCGAAGATCCCGATTTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................CGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................1913.00300120000000000000
.....................................................................GTTCGTGGCGATTGTTAAGA............................................................................................................................................................................................................................................................................2012.00200100000000100000
..................................................................................................GACTGCTGATAGTTGCAT.................................................................................................................................................................................................................................................1812.00200002000000000000
..................................................................................................GACTGCTGATAGTTGCATAC...............................................................................................................................................................................................................................................2012.00200002000000000000
......................................................................................AGAATTAATCGTGACTGC.............................................................................................................................................................................................................................................................1812.00200200000000000000
....................................................................................TAAGAATTAATCGTGACT...............................................................................................................................................................................................................................................................1812.00200200000000000000
......................................................................................AGAATTAATCGTGACTGCTG...........................................................................................................................................................................................................................................................2011.00101000000000000000
..............................................................................GATTGTTAAGAATTAATCGTGACTGCC............................................................................................................................................................................................................................................................2711.00100100000000000000
........................TGCCAAATTTGCGATAAA------ACGGGAGC.............................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................CGTGACTGCTGATAGTTG....................................................................................................................................................................................................................................................1811.00110000000000000000
..........................................................................................TTAATCGTGACTGCTGATAGT......................................................................................................................................................................................................................................................2111.00100100000000000000
.....................................................................................AAGAATTAATCGTGACTGC.............................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................GTTAAGAATTAATCGTGACTGCT............................................................................................................................................................................................................................................................2311.00100010000000000000
.............................AATTTGCGATAAA------ACGG.................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
....................................GATAAA------ACGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..............................................................GA-ATATGTTCGTGGCGATT...................................................................................................................................................................................................................................................................................1911.00100000010000000000
............................................................................................AATCGTGACTGCTGATA........................................................................................................................................................................................................................................................1711.00100000001000000000
.................................................................................TGTTAAGAATTAATCGTGACTGCTGAT.........................................................................................................................................................................................................................................................2711.00101000000000000000
.........................................................................................................................................................................TTAAAG---GATCCACATGAC------------------------------------------------.......................................................................................................................1811.00100000000001000000
....................................GATAAA------ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................2411.00100000000000001000
..........................................................................................TTAATCGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................2411.00100100000000000000
.....................................................................................AAGAATTAATCGTGACTGCTGAT.........................................................................................................................................................................................................................................................2311.00100100000000000000
................................................ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..............................ATTTGCGATAAA------ACGGGG...............................................................................................................................................................................................................................................................................................................1811.00100100000000000000
........................................AA------ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................2011.00100000000000100000
......................................................................TTCGTGGCGATTGTTAAG.............................................................................................................................................................................................................................................................................1811.00100000010000000000
........................................AA------ACGGGAGCTGCAATGA-A...................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.......................................AAA------ACGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2311.00100010000000000000
......................................................................................................GCTGATAGTTGCATACATTT...........................................................................................................................................................................................................................................2011.00100000000001000000
........................................................................................AATTAATCGTGACTGCTGA..........................................................................................................................................................................................................................................................1911.00100000000001000000
...............................................................................................CGTGACTGCTGATAGTTGCATACATTT...........................................................................................................................................................................................................................................2711.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................GTCTATATCAAGACCGAAGATCCCGAT....2711.00101000000000000000
.........................................................................................ATTAATCGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................2511.00100010000000000000
................................................ACGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2011.00100100000000000000
droSec2
AAAACGACGAGCTCCC-AGGTTACTGCCAAATTTGCGATAAA------ACGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CACTTA--------AA---------------------GCTTAAAG---GATCCACATGAC------------------------------------------------CG-----AT---------------------------G------------TA-CTTTGTC--TTTTTCAGGTATCACACTCCCAACGTGGTCTATATCAAGACCGAAGATCCCGATCTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................TGTTAAGAATTAATCGTGAC................................................................................................................................................................................................................................................................2012.0022000
....CGACGAGCTCCC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2312.0020020
................................................................................TTGTTAAGAATTAATCGTGACTGCT............................................................................................................................................................................................................................................................2511.0011000
AAAACGACGAGCTCCC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2611.0010100
.......CGAGCTCCC-AGGTTACTGCCAAA......................................................................................................................................................................................................................................................................................................................................2311.0010100
.........................................A------ACGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................1911.0010010
...........................CAAATTTGCGATAAA------ACGGGAGC.............................................................................................................................................................................................................................................................................................................2311.0010010
.................................................................ATATGTTCGTGGCGATTGTTAAGA............................................................................................................................................................................................................................................................................2411.0010010
...........................................................AATGA-ATATGTTCGTGGCG......................................................................................................................................................................................................................................................................................1911.0010010
.......................................................CTGCAATGA-ATATGTTCGTGGC.......................................................................................................................................................................................................................................................................................2211.0010010
...ACGACGAGCTCCC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................TGCAATGA-ATATGTTCGTG.........................................................................................................................................................................................................................................................................................1911.0010010
...............................................................A-ATATGTTCGTGGCGATTGTTAAG.............................................................................................................................................................................................................................................................................2411.0011000
.........................................................................................ATTAATCGTGACTGCTGATAGT......................................................................................................................................................................................................................................................2211.0011000
..........................................................................................................................................................................................................................................................................................................................................ATATCAAGACCGAAGATCCCGAT....2311.0010010
...............................TTTGCGATAAA------ACGGGAGCTGC..........................................................................................................................................................................................................................................................................................................2211.0010010
............................................................ATGA-ATATGTTCGTGGCGAT....................................................................................................................................................................................................................................................................................2011.0011000
..AACGACGAGCTCCC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2411.0010100
.....GACGAGCTCCC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2211.0010010
........................................................................................AATTAATCGTGACTGCTGATAGT......................................................................................................................................................................................................................................................2311.0011000
....................................................................................TAAGAATTAATCGTGACTGCTGATAGTT.....................................................................................................................................................................................................................................................2811.0010100
.AAACGACGAGCTCCC-AGGTTACT............................................................................................................................................................................................................................................................................................................................................2311.0011000
.....................................................................GTTCGTGGCGATTGTTAA..............................................................................................................................................................................................................................................................................1811.0010010
....................................................................................TAAGAATTAATCGTGACTGCTGATAGT......................................................................................................................................................................................................................................................2711.0010100
droYak3
AAAACGACGAGCTTCC-AGGATACTGTCAAATTTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTCAGAATTAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CACATG--------TA---------------------TCT-AGAG---GATCCACATAAC------------------------------------------------CG-----AT---------------------------A------------TA-CTTTGTC--TACTTTAGGTATCACACTCCCAACGTGGTCTACATTAAGACCGAAGACCCCGATCTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................GTTCGTGGCGATTGTTCAGA............................................................................................................................................................................................................................................................................2013.00300000030000
.......................................AAA-------CGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2212.00200100010000
............TTCC-AGGATACTGTCAAATTTGC.................................................................................................................................................................................................................................................................................................................................2312.00200000020000
....................................GATAAA-------CGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................................AATGA-ATATGTTCGTGGCGATT...................................................................................................................................................................................................................................................................................2211.00100000010000
......................................TAAA-------CGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2311.00100100000000
..AACGACGAGCTTCC-AGGAT...............................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.................................................................................TGTTCAGAATTAATCGTGACTGCTGATA........................................................................................................................................................................................................................................................2811.00100000010000
.........................................................................................ATTAATCGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................2511.00100000010000
...............................................................................................CGTGACTGCTGATAGTTGCATACATTT...........................................................................................................................................................................................................................................2711.00101000000000
......................................................................................AGAATTAATCGTGACTGCTGA..........................................................................................................................................................................................................................................................2111.00100100000000
........................................AA-------CGGGAGCTGCAATGA-ATTC................................................................................................................................................................................................................................................................................................2111.00100100000000
............................AAATTTGCGATAAA-------CGGGAGCTGCAATG......................................................................................................................................................................................................................................................................................................2811.00100000010000
..............................................................................GATTGTTCAGAATTAATCGT...................................................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................TAATCGTGACTGCTGATAGTT.....................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................GTTCAGAATTAATCGTGACT...............................................................................................................................................................................................................................................................2011.00100000010000
....................................GATAAA-------CGGGAGCTGCAATGA-ATATGTT.............................................................................................................................................................................................................................................................................................2811.00100000010000
.........................................................................................ATTAATCGTGACTGCTGATA........................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................GTTCAGAATTAATCGTGACTGCTGATA........................................................................................................................................................................................................................................................2711.00100000010000
..................................................................................................GACTGCTGATAGTTGCATACATTTA-.........................................................................................................................................................................................................................................2511.00101000000000
droEre2
AAAACGACGAGCTCTC-AGGTTACTGCCAAATTTGCGATAAA-------CGGGAGCTGCAATGA-ATATGTTCGTGGCGATTGTTAAGAATTAATCGTGACTGCTGATAGTTGCATACATTTA-AACT--CACTTG--------AA---------------------GCTTAGAG---GATCCACATAAC------------------------------------------------CG-----AT---------------------------G------------TA-CTGTGTC--TATTACAGGTATCACACTCCCAACGTGGTCTACATCAAGACCGAAGACCCTGATTTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....CGACGAGCTCTC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2316.0060105000
..AACGACGAGCTCTC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2514.0040301000
.....GACGAGCTCTC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2214.0041201000
.....................................................................................................TGCTGATAGTTGCATACATTT...........................................................................................................................................................................................................................................2113.0032000010
..AACGACGAGCTCTC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2413.0030101100
..............................ATTTGCGATAAA-------CGGGAGC.............................................................................................................................................................................................................................................................................................................1913.0030102000
.AAACGACGAGCTCTC-AGGTTACT............................................................................................................................................................................................................................................................................................................................................2313.0031200000
......................................................GCTGCAATGA-ATATGTTCGT..........................................................................................................................................................................................................................................................................................2012.0020200000
.......................................AAA-------CGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2212.0021100000
..AACGACGAGCTCTC-AGGTTACTGCCA........................................................................................................................................................................................................................................................................................................................................2612.0020101000
....CGACGAGCTCTC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2212.0020200000
.AAACGACGAGCTCTC-AGGT................................................................................................................................................................................................................................................................................................................................................1912.0020002000
.AAACGACGAGCTCTC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2612.0020200000
.....................................................AGCTGCAATGA-ATATGTTCGTGGC.......................................................................................................................................................................................................................................................................................2412.0021000010
........................................................................................AATTAATCGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................2612.0021001000
.....GACGAGCTCTC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2112.0020200000
.....GACGAGCTCTC-AGGTTACTGCCA........................................................................................................................................................................................................................................................................................................................................2312.0020200000
............................................................................................AATCGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................2212.0020002000
...............................TTTGCGATAAA-------CGGGAGC.............................................................................................................................................................................................................................................................................................................1812.0020200000
...ACGACGAGCTCTC-AGGTTACTGCC.........................................................................................................................................................................................................................................................................................................................................2412.0020101000
....................................GATAAA-------CGGGAGCTGCAATGA-ATAT................................................................................................................................................................................................................................................................................................2512.0020000110
......................ACTGCCAAATTTGCGATAAA-------CG..................................................................................................................................................................................................................................................................................................................2211.0011000000
................................................................................TTGTTAAGAATTAATCGTGACTGCTGA..........................................................................................................................................................................................................................................................2711.0010100000
...............................TTTGCGATAAA-------CGGGAGCTGCAAT.......................................................................................................................................................................................................................................................................................................2411.0010100000
....CGACGAGCTCTC-AGGTTACT............................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................................................................................................................................................................................................................................................................................................................ATCACACTCCCAACGTGGT.............................1911.0010100000
........................................AA-------CGGGAGCTGCAATGA-ATATG...............................................................................................................................................................................................................................................................................................2211.0011000000
............................AAATTTGCGATAAA-------CGGGA...............................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................TGATAGTTGCATACATTT...........................................................................................................................................................................................................................................1811.0010000010
.......................................................CTGCAATGA-ATATGTTCGTGGCGATT...................................................................................................................................................................................................................................................................................2611.0011000000
..AACGACGAGCTCTC-AGGT................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.....................................ATAAA-------CGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................2211.0010000010
................................TTGCGATAAA-------CGGGAGCTGCAATG......................................................................................................................................................................................................................................................................................................2411.0010001000
................................................................................TTGTTAAGAATTAATCGTGA.................................................................................................................................................................................................................................................................2011.0010001000
................................................................................................GTGACTGCTGATAGTTGCATACATTT...........................................................................................................................................................................................................................................2611.0011000000
..................................................................................GTTAAGAATTAATCGTGAC................................................................................................................................................................................................................................................................1911.0011000000
....................................GATAAA-------CGGGAGCTGCAATGA-ATATG...............................................................................................................................................................................................................................................................................................2611.0010100000
....................TTACTGCCAAATTTGCGAT..............................................................................................................................................................................................................................................................................................................................1911.0010100000
...................................................GGAGCTGCAATGA-ATATGTTCGTGGC.......................................................................................................................................................................................................................................................................................2611.0010100000
....................................GATAAA-------CGGGAGCTGCAATGA-AT..................................................................................................................................................................................................................................................................................................2311.0010000010
...ACGACGAGCTCTC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2311.0010000100
................................................................................TTGTTAAGAATTAATCGC...................................................................................................................................................................................................................................................................1811.0010100000
..AACGACGAGCTCTC-AGGTTACT............................................................................................................................................................................................................................................................................................................................................2211.0010100000
.....................................................................GTTCGTGGCGATTGTTAAGA............................................................................................................................................................................................................................................................................2011.0010100000
...............................................................................................CGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................1911.0010001000
...............................................................................................CGTGACTGCTGATAGTTGCATACATTT...........................................................................................................................................................................................................................................2711.0011000000
AAAACGACGAGCTCTC-AGGTTACTGC..........................................................................................................................................................................................................................................................................................................................................2611.0010100000
.............................AATTTGCGATAAA-------CGGGAGC.............................................................................................................................................................................................................................................................................................................2011.0010000100
....................................GATAAA-------CGGGAGCTGCAATG......................................................................................................................................................................................................................................................................................................2011.0010100000
...............................................................................................CGTGACTGCTGATAGTTGCATACATTTA-.........................................................................................................................................................................................................................................2811.0011000000
.......................................................CTGCAATGA-ATATGTTCGTGGCG......................................................................................................................................................................................................................................................................................2311.0010001000
..........................................................................................TTAATCGTGACTGCTGATAGTTGC...................................................................................................................................................................................................................................................2411.0010100000
....................................................................................................................................................................................................................................................................................................................TATCACACTCCCAACGTGGT.............................2011.0010001000
........................................AA-------CGGGAGCTGCAATGA-ATATGTTCGTG.........................................................................................................................................................................................................................................................................................2811.0010100000
........................................................................................AATTAATCGTGACTGCTGATAGT......................................................................................................................................................................................................................................................2311.0010000010
.............................................................................................................GTTGCATACATTTA-AACT--CACTTG--------A....................................................................................................................................................................................................................2511.0011000000
...................................CGATAAA-------CGGGAGCTGCAATGA-ATA.................................................................................................................................................................................................................................................................................................2511.0011000000
..AACGACGAGCTCTC-AGGTTAC.............................................................................................................................................................................................................................................................................................................................................2111.0010100000
.........................................................................................ATTAATCGTGACTGCTGATAGTT.....................................................................................................................................................................................................................................................2311.0010000100

Generated: 06/08/2015 at 03:32 PM