ID:

dpe_950

 Coordinate:

scaffold_19:927990-928140 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dper\GL27195-cds]; exon [dper_GLEANR_9811:1]; intron [Dper\GL27195-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCACCCACAGTATTGAGGTGCTGCCACCTCTGACGGCACAACAGCACAAGTGAGTAGACCCTAGACTCTAGACTCTAGTCTGTAGATTGTAGATGATTGATCCCCCCCACTACACGACCCACTATATTATATGTGTGAATGAATGGTTTGGTTTGCCTGCCGGTTGTACCCGTTTGGAATCTGTTTTGTGTGTGTTTTTTTTTCGATTGTTTTGCATAAACACTCTCTATCAATAATTTATAAGCGGCGA
**************************************************..((.((((..((((...))))..)))).))..((((((.((((((....((..((..((...((.((((.(((((.((((........)))))))))..))))))..))..))..))...)))))).)))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M021
embryo
 M042
female body
 V050
head
 V057
head
................AGGTGCTGCCACCTCTGACGGCAC................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.CCACACACAGTTTTGATGTGCT.................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0
......................TGCCACCTCTGACGGCACAACAG.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0
............ATTGAGGTGCTGCCACCTCTGACGGC..................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
....................................................................................................................................................TTGGAATGCCTGCCGGTTG.................................................................................... 19 2 2 0.50 1 0 1 0 0
....................................................................................................................................................................TTGTATCCTTTTGCAATCTGTTT................................................................ 23 3 2 0.50 1 0 0 0 1
............................................................................................GATGTTGGATCCCCCCCA............................................................................................................................................. 18 2 6 0.17 1 1 0 0 0
.............................................................................................................................................................................TTTGGGATCTGTCTTGTGT........................................................... 19 2 11 0.09 1 0 0 0 1
..............................................................................................................................................................................TTGGGATCTGTTTGGTGT........................................................... 18 2 20 0.05 1 0 0 0 1

Anti-sense strand reads

TGGTGGGTGTCATAACTCCACGACGGTGGAGACTGCCGTGTTGTCGTGTTCACTCATCTGGGATCTGAGATCTGAGATCAGACATCTAACATCTACTAACTAGGGGGGGTGATGTGCTGGGTGATATAATATACACACTTACTTACCAAACCAAACGGACGGCCAACATGGGCAAACCTTAGACAAAACACACACAAAAAAAAAGCTAACAAAACGTATTTGTGAGAGATAGTTATTAAATATTCGCCGCT
**************************************************..((.((((..((((...))))..)))).))..((((((.((((((....((..((..((...((.((((.(((((.((((........)))))))))..))))))..))..))..))...)))))).)))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V111
male body
.......................................................................................................CGGGCGTGATGTGCTGGG.................................................................................................................................. 18 2 4 0.25 1 1 0 0
.....................................................................................................AGGGGGGGTGATGGGCTGGGAA................................................................................................................................ 22 3 4 0.25 1 0 0 1
.......................................................................................................CGGGGGTGATGTGCTGGGAGT............................................................................................................................... 21 3 4 0.25 1 1 0 0
......................................................................................................GGGGGAGTGATGGGCTGG................................................................................................................................... 18 2 9 0.22 2 1 1 0
......................................................................................................CGGGGGGTGATGGGCTGGG.................................................................................................................................. 19 2 6 0.17 1 1 0 0
.......................................................................................................GGGGAGTGATGGGCTGGGT................................................................................................................................. 19 2 7 0.14 1 1 0 0
.....................................................................................................AGGGGGAGTGATGGGCTG.................................................................................................................................... 18 2 7 0.14 1 0 1 0
.......................................................................................................GGGGCGTGATGGGCTGGG.................................................................................................................................. 18 2 14 0.07 1 1 0 0
.......................................................................................................................................................................................................................GTAATTGTCAGAGATAGTA................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_19:927940-928190 - dpe_950 ACCACCCACAGTATTGAGGTGCTGC---CACCTCTGACGGCACAACAGCACAAGTGAGTAGACCCT--A-----------------------------------------------------------------------------------GACTCTA------------------------------------------GACTCTAGTCTGTAGA-------TTGTAGATGATTGATCCCCCCCAC--TACACGACC-----------------------------------------------------------------------------------------------------------------------------------------------------------CACTAT------ATTATATGTGTGA-ATGAATGGTTTGGTTTGCCTGCCGGTTGTACCCGTTTGGA-AT--------------C----------------TGTTTTGTGTGTGTTTTTTTTTCGATTG------------------------------TTTTGCATAAACACT--------------------------------------------CTCTATCAATAATTTATAAGCGGCGA
dp5 2:5217962-5218208 - ACCACCCACAGTATTGAGGTGCTGC---CACCTCTGACGGCACAACATCACAAGTGAGTAGACCCT--A-----------------------------------------------------------------------------------GACTCTAC-----------AC------------------------TCTAGACTCTAGTCTGTAGATTGTAGATTGTAGATGATTGATCCCTCCCAC--TACACGACC-----------------------------------------------------------------------------------------------------------------------------------------------------------CACTAT------ATTATATGTGTGA-ATGA-----------------ATGGTTGTACCCGTTTGGA-AT--------------C----------------TGTTTTGTGTGTGTT-TTTTTTCGATT------------------------------GTTTTGCATAAACACT--------------------------------------------CTCTATCAATAATTTATAAGCGGCGA
droWil2 scf2_1100000004943:16312288-16312335 - ACCACACACAGTATTGAGGTGCCAT---------TGACGCCAC---AGCACAAGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:10764634-10765022 - ACCACACACAGTATTGAGGTGCCATTGACGCCACTGACGCCGC---CGAACAAGTGAGTAAACCA--------------------------------GATTAGAT--TTG----AATGCCC-------------------------------G---TTCA-----------ACATACCCTCGCACCAATAAACAAACTCTAGATTTTC--------------------------------------------------------------------------------------------------------------------------CTTATCAAGTGACAGTGAGGCAGATAATAATCAATGCATATATACTTAGAATAAACGCATTTTCACATAAATTAATTTATTGCCAATTATAAAACAATTATGTATGTTACATAGAT--------CGTTTGGATAGTT-TATAGGGTGTTC-TTTCGCCGAGCTGT--T--TA-TATTTGTCGTTTGTTTTG---------GTTTTTCGAATTGGCG------------------ATCGAGCACTTTGCATAAATATGCAACC-CTGGC------GTCGAT--GGAGT---------CTAGGCTATATCAATAATTCATAAGCGGCGA
droMoj3 scaffold_6540:31028476-31028673 + ACCACACACAGTATTGAGGTGCCAT---TGACGCAGACGCCGC---CGAACAAGTGAGTAGCAC----------------------------------------------------------------------------------------GACTTTGC-----------ACATACCCTCT----------------------TCTAGTAC------AATAGGCAATGG----GGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-TGTCCC----------------------------CC----------------CTTCGCCCA----------------------CCCATGTGCTGTGCATAAAAATGCAACT-GTGGC------GTTCGTTTCGAGT---------CTATGCTATATCAATAATTCATAAGCGGCGA
droGri2 scaffold_14624:541286-541342 - ACCACACACAGTATTGAGGTGCCATTGACGCCGCTGACGCCGC---CAAATAAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:6316104-6316313 + ACCACACACAGTATTGAGGTGCCAT---CGCCGCTGACGCCGC---AGCACAAGTGAGTAGATG-----------------------------------------------------------------------------------------------T-----------AGATACTTTTT----------------------ATAAGA--------TATAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TCTGAT-----CCC----------------CTTCGACATTC-GTCGTTGGCTGTTTGTTGGCAT--CTTGTTCGCATAAATATGCAACGAGCGGA--GACTGTCTGC--GGAGACTGCTGGGACTGGGCCATATCAATAATTTATAAGTGGCGA
droBip1 scf7180000396708:2527662-2527895 - ACCACACACAGTATTGAGGTGCCAT---CGCCGCTGACGCCGC---AACACAAGTGAGTAGATACC-------------ATATAGCATAGTA----------------------------------------------------------------------------------------------------------------------------------GATAGTAG----TCTATCCTACCCACATAATACTGCCCTCGA-------------------------------------------------------------------------------------------------------------------------------------------------------ACTA---------------------------------------TGGCCGGTTGTACTCG--------------------------------------TTTATTTTG----------ATATTCGATATTC-G------------------CTT--CTTGTTCGCATAAATATGCAACGATTGGTGAGACTGTCTGC--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droKik1 scf7180000302706:1990379-1990464 + ACCACACACAGTATTGAGGTGCCAC---CGCCGCTGACGCCGC---AGCACAAGTGAGTACCACTC--A-----------------------------------------------------------------------------------GATTCTAC-----------ATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAGATGA
droFic1 scf7180000454104:1085865-1085998 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGGTCGTACCCGGTTTTT-AT--------------TCGCA-TTTTATTCGTTCGTCTTG---------TGTTTTCGACTTTG-G------------------CT---GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droEle1 scf7180000490967:982161-982296 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGGTCGTACCCGGTTTTT-AT------------ATTCGCA-TTTTATTCGTTCGTTTTG---------TGTTTTCGACTTTG-A------------------CT---GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droRho1 scf7180000779916:74757-74810 - ACCACACACAGTATTGAGGTGCCAT---CGCAGCTCACGGCGC---AGCACAAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:3247251-3247384 + GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTCGTACCCGGTTTTC-AT--------------TCGCA-TTTCATTCGTTCGTTTTG---------CTTTTTCCACTTTG-G------------------CTT--GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GTAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droTak1 scf7180000415245:366600-366990 - ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACTACTT--A------------------------------ATAACT--ATG----GATAAATATTATCAAGAAATA-------CAAAATTCTGGAGCCTATAGTAAAATCCAAGGTTCCCAAGTACTAAGATACCA--------------------------------------------------AACGTAACTCGACCGGCTA--ACT--AGAA--TT--TTGTGT-ATCTC-----TTTAACTTTA----------CATGAATATCAGTTTAG------------AC-----------------------------GTATAA---------------------------ACCAAGTAAGAAACCATTATGTC----CCCCACTT--------TGTTTTGCCGGTCGTACCCGGTTTTT-AT--------------TCGCA-TTTTATTCGTTCGTTTTGTGTG-------TTTTCGACTTTG-G------------------CTT--GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droEug1 scf7180000409470:76350-76499 + TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGCCGGTCTTACCCGGTTTTTCTT--------------TCGCA-TTTTATTCGTTCGTTTTGGTTGTTTG-TTTCTTTGACTTTG-G------------------CTT--GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
dm3 chr3R:5756221-5756599 + ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGACGCTAAGTTTCTCAAATATAGTATAGTAAACCAGCATAGGAAACAGAAATCATGCCA--------------GATTAATCACAATTCA----------------------------------------------------------------------TG-------ATGGTTGGCCCCA-------------------GGAA--TAGAGAAACCTAATGGCGAAACCTCTTGGTTTAAGCTTAAGGTAAACACTC-AGAATATCTGTTTACC-TGAGTAAGA-AC-----------------------------G--------------------------------GCCAA-----------------------------T--------CATTTTGCCGGTCCTACCCGGTTTTT-AA--------------TCGCAGTTTTATTCGTTCGTTTTGTGTG--------CTTCGACTTTG-G------------------CTTACGGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droSim2 3r:15291356-15291706 - dsi_478 ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGACCATCATTTGCTATAATATAGAATAGTA-ACCAGCTAAGGAAACAGAAATCATGCCA--------------GATTAATCACAATTCA----------------------------------------------------------------------TG---------------------------------------------------------ATGGCGAAACCTCTTGGTTTTAGCTTAAGGTAAACACTC-AGAATATCTGTTTAGCAAGAGCAAGAGAC-----------------------------G--------------------------------GCCAA-----------------------------T--------CATTTTGCCGGTCCTACCCGGTTTTT-AA--------------TCGCAGCTTTATTCGTTCGTTTTGTGTG--------CCTCGACTTTG-G------------------CTTACGGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droSec2 scaffold_0:16160701-16161046 - ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGACCATAATTTGCTATAATATAGAATAGTA-ACCAGCTTAGGAAACAGAAATCA--------------------------------------------------------------------------------------------------------------------------ACCAT-------------------GGAA--TAGAGAA--CTCATGGCGAAACCTCTTGGTTTTAGCTTAAGGGAAACACTC-AGAATATCTGTTTACC-TGAGCAAGAGAC-----------------------------G--------------------------------ACCAA-----------------------------T--------CATTTTGCCGGTCCTACCCGGTTTTT-AA--------------TCGCAGCTTTATTCGTTTGTTTTGTGTG--------CCTCGACTTTG-G------------------CTTACGGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGA
droYak3 3R:9802833-9802916 + ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGCCCTTAATTATTGACAATATGCTATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:15847457-15847553 - ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGCCCCTAGTTATCCAAAGTGTAGTACGGTA---------------------------------------------------------------------------------------------------------------------------GA-------GTTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
ACCACCCACAGTATTGAGGTGCTGC---CACCTCTGACGGCACAACAGCACAAGTGAGTAGACCCT--A-----------------------------------------------------------------------------------GACTCTA------------------------------------------GACTCTAGTCTGTAGA-------TTGTAGATGATTGATCCCCCCCAC--TACACGACC-----------------------------------------------------------------------------------------------------------------------------------------------------------CACTAT------ATTATATGTGTGA-ATGAATGGTTTGGTTTGCCTGCCGGTTGTACCCGTTTGGA-AT--------------C----------------TGTTTTGTGTGTGTTTTTTTTTCGATTG------------------------------TTTTGCATAAACACT--------------------------------------------CTCTATCAATAATTTATAAGCGGCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................AGGTGCTGC---CACCTCTGACGGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................TGC---CACCTCTGACGGCACAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
............ATTGAGGTGCTGC---CACCTCTGACGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
dp5
ACCACCCACAGTATTGAGGTGCTGC---CACCTCTGACGGCACAACATCACAAGTGAGTAGACCCT--A-----------------------------------------------------------------------------------GACTCTAC-----------AC------------------------TCTAGACTCTAGTCTGTAGATTGTAGATTGTAGATGATTGATCCCTCCCAC--TACACGACC-----------------------------------------------------------------------------------------------------------------------------------------------------------CACTAT------ATTATATGTGTGA-ATGA-----------------ATGGTTGTACCCGTTTGGA-AT--------------C----------------TGTTTTGTGTGTGTT-TTTTTTCGATT------------------------------GTTTTGCATAAACACT--------------------------------------------CTCTATCAATAATTTATAAGCGGCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................CTAGTCTGTAGATTGTAGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................AGATGATTGATCCCTCCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................AGTCTGTAGATTGTAGATTGTAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................AGGTGCTGC---CACCTCTGACGGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............ATTGAGGTGCTGC---CACCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................GGTGCTGC---CACCTCTGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................TGC---CACCTCTGACGGCACAACATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................GC---CACCTCTGACGGCACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
droWil2
ACCACACACAGTATTGAGGTGCCAT---------TGACGCCAC---AGCACAAGTAAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACCACACACAGTATTGAGGTGCCATTGACGCCACTGACGCCGC---CGAACAAGTGAGTAAACCA--------------------------------GATTAGAT--TTG----AATGCCC-------------------------------G---TTCA-----------ACATACCCTCGCACCAATAAACAAACTCTAGATTTTC--------------------------------------------------------------------------------------------------------------------------CTTATCAAGTGACAGTGAGGCAGATAATAATCAATGCATATATACTTAGAATAAACGCATTTTCACATAAATTAATTTATTGCCAATTATAAAACAATTATGTATGTTACATAGAT--------CGTTTGGATAGTT-TATAGGGTGTTC-TTTCGCCGAGCTGT--T--TA-TATTTGTCGTTTGTTTTG---------GTTTTTCGAATTGGCG------------------ATCGAGCACTTTGCATAAATATGCAACC-CTGGC------GTCGAT--GGAGT---------CTAGGCTATATCAATAATTCATAAGCGGCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................ATTGACGCCACTGACGCCGC---CGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000000000000000000000000000000000100000000000000000000000000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTC-TTTCGCCGAGCTG...................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.........................TGACGCCACTGACGCCGC---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGCAACC-CTGGC------GTCGAT--GGAGT---------...............................2711.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--T--TA-TATTTGTCGTTTGTTTTG---------GT.............................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
........CAGTATTGAGGTGCCATTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
........................TTGACGCCACTGACGCCGC---CGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................ATTGACGCCACTGACGCCGC---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..CACACACAGTATTGAGGTGCCATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACCACACACAGTATTGAGGTGCCAT---TGACGCAGACGCCGC---CGAACAAGTGAGTAGCAC----------------------------------------------------------------------------------------GACTTTGC-----------ACATACCCTCT----------------------TCTAGTAC------AATAGGCAATGG----GGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-TGTCCC----------------------------CC----------------CTTCGCCCA----------------------CCCATGTGCTGTGCATAAAAATGCAACT-GTGGC------GTTCGTTTCGAGT---------CTATGCTATATCAATAATTCATAAGCGGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAACT-GTGGC------GTTCGT...............................................2011.001100000
.................GGTGCCAT---TGACGCAGACGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droGri2
ACCACACACAGTATTGAGGTGCCATTGACGCCGCTGACGCCGC---CAAATAAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................ATTGACGCCGCTGACGCCGC---CAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
droAna3
ACCACACACAGTATTGAGGTGCCAT---CGCCGCTGACGCCGC---AGCACAAGTGAGTAGATG-----------------------------------------------------------------------------------------------T-----------AGATACTTTTT----------------------ATAAGA--------TATAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TCTGAT-----CCC----------------CTTCGACATTC-GTCGTTGGCTGTTTGTTGGCAT--CTTGTTCGCATAAATATGCAACGAGCGGA--GACTGTCTGC--GGAGACTGCTGGGACTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........GTATTGAGGTGCCAT---CGCCGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-----CCC----------------CTTCGACATTC-GTCGTTGGC.......................................................................................................2611.001010000
....................GCCAT---CGCCGCTGACGCCGC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................GCCAT---CGCCGCTGACGCCGC---AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............GAGGTGCCAT---CGCCGCTGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................GCCGCTGACGCCGC---AGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
ACCACACACAGTATTGAGGTGCCAT---CGCCGCTGACGCCGC---AACACAAGTGAGTAGATACC-------------ATATAGCATAGTA----------------------------------------------------------------------------------------------------------------------------------GATAGTAG----TCTATCCTACCCACATAATACTGCCCTCGA-------------------------------------------------------------------------------------------------------------------------------------------------------ACTA---------------------------------------TGGCCGGTTGTACTCG--------------------------------------TTTATTTTG----------ATATTCGATATTC-G------------------CTT--CTTGTTCGCATAAATATGCAACGATTGGTGAGACTGTCTGC--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotal
No Reads
droKik1
ACCACACACAGTATTGAGGTGCCAC---CGCCGCTGACGCCGC---AGCACAAGTGAGTACCACTC--A-----------------------------------------------------------------------------------GATTCTAC-----------ATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAGATGASizeHit CountTotal NormTotal
No Reads
droFic1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGGTCGTACCCGGTTTTT-AT--------------TCGCA-TTTTATTCGTTCGTCTTG---------TGTTTTCGACTTTG-G------------------CT---GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotal
No Reads
droEle1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGGTCGTACCCGGTTTTT-AT------------ATTCGCA-TTTTATTCGTTCGTTTTG---------TGTTTTCGACTTTG-A------------------CT---GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotal
No Reads
droRho1
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTCACGGCGC---AGCACAAGTGAGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTCGTACCCGGTTTTC-AT--------------TCGCA-TTTCATTCGTTCGTTTTG---------CTTTTTCCACTTTG-G------------------CTT--GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GTAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotal
No Reads
droTak1
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACTACTT--A------------------------------ATAACT--ATG----GATAAATATTATCAAGAAATA-------CAAAATTCTGGAGCCTATAGTAAAATCCAAGGTTCCCAAGTACTAAGATACCA--------------------------------------------------AACGTAACTCGACCGGCTA--ACT--AGAA--TT--TTGTGT-ATCTC-----TTTAACTTTA----------CATGAATATCAGTTTAG------------AC-----------------------------GTATAA---------------------------ACCAAGTAAGAAACCATTATGTC----CCCCACTT--------TGTTTTGCCGGTCGTACCCGGTTTTT-AT--------------TCGCA-TTTTATTCGTTCGTTTTGTGTG-------TTTTCGACTTTG-G------------------CTT--GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotal
No Reads
droEug1
TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGCCGGTCTTACCCGGTTTTTCTT--------------TCGCA-TTTTATTCGTTCGTTTTGGTTGTTTG-TTTCTTTGACTTTG-G------------------CTT--GGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotal
No Reads
dm3
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGACGCTAAGTTTCTCAAATATAGTATAGTAAACCAGCATAGGAAACAGAAATCATGCCA--------------GATTAATCACAATTCA----------------------------------------------------------------------TG-------ATGGTTGGCCCCA-------------------GGAA--TAGAGAAACCTAATGGCGAAACCTCTTGGTTTAAGCTTAAGGTAAACACTC-AGAATATCTGTTTACC-TGAGTAAGA-AC-----------------------------G--------------------------------GCCAA-----------------------------T--------CATTTTGCCGGTCCTACCCGGTTTTT-AA--------------TCGCAGTTTTATTCGTTCGTTTTGTGTG--------CTTCGACTTTG-G------------------CTTACGGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................CAGCTGACGGCGC---AGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................ATCTGTTTACC-TGAGTAAGA-AC-----------------------------G--------------------------------GC....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CCACACACAGTATTGAGGTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AAACACTC-AGAATATCTGT......................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................CGCAGCTGACGGCGC---AGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGTTCGTTTTGTGTG--------C...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTCGTTTTGTGTG--------CTT.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGCTGACGGCGC---AGCACAAGTGAGTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAATATGCAACGATTGGC------.....................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAATTTATAAGTGG...1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGCAGCTGACGGCGC---AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGC------GTCTGT--GGAGA---------CTGGGC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................AGAAACCTAATGGCGAAACCTCTT..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGCAGCTGACGGCGC---AGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................ATAGTAAACCAGCATAGGAAACAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGT--GGAGA---------CTGGGCCATATC...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CACAGTATTGAGGTGCCAT---CGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AATATCTGTTTACC-TGAGTA..........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AATGGCGAAACCTCTTGGTTTA....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGC------GTCTGT--GGAGA---------CTGGGCC........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................AGCATAGGAAACAGAAATCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................AT---CGCAGCTGACGGCGC---AGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AACCTCTTGGTTTAAGCTTAAGGT..........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TTTACC-TGAGTAAGA-AC-----------------------------G--------------------------------GCC...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TGGTTGGCCCCA-------------------GGAA--TAGA.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CGGCGC---AGCACAAGTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........GTATTGAGGTGCCAT---CGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GGAGA---------CTGGGCCATAT....................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTGGCCCCA-------------------GGAA--TAGAGAAACCT..........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCAGCTGACGGCGC---AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGACCATCATTTGCTATAATATAGAATAGTA-ACCAGCTAAGGAAACAGAAATCATGCCA--------------GATTAATCACAATTCA----------------------------------------------------------------------TG---------------------------------------------------------ATGGCGAAACCTCTTGGTTTTAGCTTAAGGTAAACACTC-AGAATATCTGTTTAGCAAGAGCAAGAGAC-----------------------------G--------------------------------GCCAA-----------------------------T--------CATTTTGCCGGTCCTACCCGGTTTTT-AA--------------TCGCAGCTTTATTCGTTCGTTTTGTGTG--------CCTCGACTTTG-G------------------CTTACGGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................TAAGGAAACAGAAATCATGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTCGTTTTGTGTG--------CCT.........................................................................................................................2111.00110000000000000000
......................CAT---CGCAGCTGACGGCGC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTCGTTTTGTGTG--------CCC.........................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................GTTTAGCAAGAGCAAGAGAC-----------------------------.......................................................................................................................................................................................................................................................................................2011.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGC------GTCTGT--GGAGA---------CT.............................1911.00110000000000000000
..................GTGCCAT---CGCAGCTGACGGCGC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.....................................................................................AATAGTA-ACCAGCTAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.11100000000001000000
droSec2
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGACCATAATTTGCTATAATATAGAATAGTA-ACCAGCTTAGGAAACAGAAATCA--------------------------------------------------------------------------------------------------------------------------ACCAT-------------------GGAA--TAGAGAA--CTCATGGCGAAACCTCTTGGTTTTAGCTTAAGGGAAACACTC-AGAATATCTGTTTACC-TGAGCAAGAGAC-----------------------------G--------------------------------ACCAA-----------------------------T--------CATTTTGCCGGTCCTACCCGGTTTTT-AA--------------TCGCAGCTTTATTCGTTTGTTTTGTGTG--------CCTCGACTTTG-G------------------CTTACGGCTTTTGCATAAATATGCAACGATTGGC------GTCTGT--GGAGA---------CTGGGCCATATCAATAATTTATAAGTGGCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGC------GTCTGT--GGAGA---------C..............................1911.0010010
...................TGCCAT---CGCAGCTGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................GCCAT---CGCAGCTGACGGCGC---AGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
droYak3
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGCCCTTAATTATTGACAATATGCTATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........GTATTGAGGTGCCAT---CGCAGCTGACGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00201100000000
...............GAGGTGCCAT---CGCAGCTGACGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000
........CAGTATTGAGGTGCCAT---CGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
........CAGTATTGAGGTGCCAT---CGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............ATTGAGGTGCCAT---CGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
droEre2
ACCACACACAGTATTGAGGTGCCAT---CGCAGCTGACGGCGC---AGCACAAGTGAGTACAGCCCCTAGTTATCCAAAGTGTAGTACGGTA---------------------------------------------------------------------------------------------------------------------------GA-------GTTGAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................CCAT---CGCAGCTGACGGCGC---AGCACAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000007
............ATTGAGGTGCCAT---CGCAGCTGACGGCGC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2916.0060000006
.............TTGAGGTGCCAT---CGCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.CCACACACAGTATTGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.................GGTGCCAT---CGCAGCTGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..................GTGCCAT---CGCAGCTGACGGCGC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010

Generated: 06/08/2015 at 03:29 PM