ID:

dpe_922

 Coordinate:

scaffold_18:1688146-1688296 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.3 -32.3 -32.0 -32.0

Flybase annnotation

CDS [Dper\GL19764-cds]; exon [dper_GLEANR_22055:1]; intron [Dper\GL19764-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGGCGGGGTTGGTGGGGTCTCTGGCAGCAGCAGTGGAAGCAGCAGCATAGTGGCCAATGCCATTAGCAGCCTCAATGGCAACAACAGTGCCACCAGCAGCAGCAGTTGCATTCAACCAGCCAACAACAACAACAACAATCACAACAACAACATCAGCAGCAGCCGTGGCAGCAGCTTTGAGGCAGGAAAATGTCGCCCACCCCTCTACCCAAAACGTGAGTAAATCCCTTCAAGGGCGCCACCACCAGGG
**************************************************((((....((.(((.....(((((((.(((........((((((..((.((.((.((((.......................................))))....)).)).)).))))))...))))))))))......))).)))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 V042
embryo
 M042
female body
...GCGGGGTTCGTGGGTTCTC..................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0
....................................................GGCCAATGCCATTAGCAGCCTCAATG............................................................................................................................................................................. 26 0 1 1.00 1 0 0 1
................................................................................AACAACAGTGCCACCAGCAGCAGCAGT................................................................................................................................................ 27 0 1 1.00 1 0 1 0
..GCCGGGGTTTGTGGGGTCT...................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0
...GTGGGGTTTGTGGGGTCTCTG................................................................................................................................................................................................................................... 21 2 3 0.33 1 1 0 0
..GGCGGGGATCGTGGGGTC....................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0
...GCGGGGATCGTGGGTTCTCTG................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0
...GCGGGGGTCGTGGGGTCT...................................................................................................................................................................................................................................... 18 2 11 0.09 1 1 0 0
........................GCAGCGGCAATGGAACCAGCAGCA........................................................................................................................................................................................................... 24 3 15 0.07 1 0 1 0
...GCGGGGATCGTGGGTTCTC..................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0

Anti-sense strand reads

CGCCGCCCCAACCACCCCAGAGACCGTCGTCGTCACCTTCGTCGTCGTATCACCGGTTACGGTAATCGTCGGAGTTACCGTTGTTGTCACGGTGGTCGTCGTCGTCAACGTAAGTTGGTCGGTTGTTGTTGTTGTTGTTAGTGTTGTTGTTGTAGTCGTCGTCGGCACCGTCGTCGAAACTCCGTCCTTTTACAGCGGGTGGGGAGATGGGTTTTGCACTCATTTAGGGAAGTTCCCGCGGTGGTGGTCCC
**************************************************((((....((.(((.....(((((((.(((........((((((..((.((.((.((((.......................................))))....)).)).)).))))))...))))))))))......))).)))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V057
head
 M042
female body
 V042
embryo
.............................TCGTCACCTTCGTCGTCGTA.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0
..................................................................................................................................................................................................GCCGGCGGGGAGATGGGTTTT.................................... 21 2 1 1.00 1 1 0 0
...................................................................................................................................................................................................CGGGTGGGGTGATGGGTTTG.................................... 20 2 2 0.50 1 1 0 0
.....................................................................................................................................................................................................GGCGGGGATATGGGTTTT.................................... 18 2 4 0.50 2 2 0 0
.................................................................................................................GTTGGTCGATTGTTGTTACTGT.................................................................................................................... 22 3 3 0.33 1 1 0 0
..................................................................................................................TTGGTCGATTGTTGTGGCTGT.................................................................................................................... 21 3 7 0.29 2 2 0 0
.....................................................................................................................................................................................................AGCGGGGATATGGGTTTT.................................... 18 3 20 0.20 4 4 0 0
...................................................................................................................................................................................................AGGGCGGGGAGATGGGTTT..................................... 19 2 5 0.20 1 1 0 0
.............................................................................................................................................................................................TCACAGCGGGCGGGGAGAAGG......................................... 21 3 6 0.17 1 0 1 0
..................................................................................................................TTGGTCGATTGGTGTTGCTGT.................................................................................................................... 21 3 6 0.17 1 1 0 0
....................................................................................................................................................................................................AGGTGGGGATATGGGTTT..................................... 18 2 9 0.11 1 0 0 1
..................................................................................................................TTGGTCGATTGTTGTTACTGT.................................................................................................................... 21 3 10 0.10 1 1 0 0
...................................................................................................................TGGTCGATTGTTGTTACTGT.................................................................................................................... 20 3 20 0.05 1 1 0 0
....................................................................................................................................................................................................TAGTGGGGATATGGGTTT..................................... 18 3 20 0.05 1 0 1 0
....................................................................................................................................................................................................AGGCGGGGATATGGGTTTT.................................... 19 3 20 0.05 1 1 0 0
..................................................................................................................TTGGTCGGTTGGTGTTGGGGT.................................................................................................................... 21 3 20 0.05 1 1 0 0
....................................................................................................................................................................................................GAGCGGGGATATGGGTTTT.................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droPer2 scaffold_18:1688096-1688346 - dpe_922 GCGGCGGGGTTG---GTGGGG---TCT--CTGG-------------------------------------------C------------------------------------------------------------------AGCAGCAGTGG------------------------------------------AAGCAGCA---------------GCA---------TA-----GTGGCCAATGCC--AT------TAG------------CAGCCTCAATGGCA------ACAACAGTGCC--------------ACC---AG------------CAGCA---GCAGTTG------------------------CATTCAAC--------------CAGCCAACAACAACAAC---------------------AACAATCACAA---CAA------------------CAA------------------CATC------A------GCAGC---AGCCGTGGCAGC---AGCTT--TGA-GGCAGGAAA---------------------------ATG------TCGCCCA--------------CCCCTCTACC--------------------------------------------------------------------------------CAAAA-----CGTG--A----GTAAATC------CCTT------CAA-GGGC---GC---CACCACCAGGG
dp5 XL_group1e:2790949-2791226 - dps_2646 GCGGCGGGGTTG---GTGGGG---TCT--CTGG-------------------------------------------C------------------------------------------------------------------AGCGCCATCAGCAGCAGCAGT------------------------------GGAAGCAGCA---------------GCA---------TA-----GTGGCCAATGCC--AT------TAG------------CAGCCTCAATGGCA------ACAACAGTGCC--------------ACC---AG------------CAGCA---GCAGTTG------------------------CATTCAAC--------------CAGCCAACAACAACAAC---------------------AACAATCACAA---CAA------------------CAA------------------CATC------AGCAACATCAGCAGCAGCCGTGGCAGC---AGCTT--TGA-GGCAGGAAA---------------------------ATG------TCGTCCA--------------CCCCTCTACC--------------------------------------------------------------------------------CAAAA-----CGTG--A----GTAAATCGGGCGCCCTT------CAA-GGGC---GC---CACCACCAGGG
droWil2 scf2_1100000004511:10725348-10725527 - GCAGCAACAGCA---A------------------------------------------------------------------CAGCAA------------------------------------------------------------------------CAGC---------------------------------------------------------------A---ATACCAA-------------CAG------CAG---------------------CAGCA------ACAACCAGCCC--------------AAC---AG------------CAGCAGCAGCCAATGCAGCAGCAACAACAA-----------------------------------------------------------------------CCACCGCAG---CAG---------------CAGCAG---CAGCAA---------------------C---AGCAGC---AGCAG---CCGGCGCCACAAC--------A--------------------------------GCA------GCAGCAG--------------CCACT----------------------------------------------CTACC----------------------------------AACAA-----TCTC--A----ACAAATT------TCA--------------------------------TC
droVir3 scaffold_13042:2021910-2022132 - GCAGCAACAGCA---G------------------------------------------------------------------CTGCAG------------------------------------------------------------------------CAGC---------------------------------------------------------A---------ACAGTTG-CAGCTGCA-G--CGA------CAG------------CAG-----------------------------------------CAACA---ACGCG------AACAGCT---GCAGCTGCAGCAGCAACAGTTGCAGTT-----------------------------CCAATTGCAGCAGC---------------------AGCAGCTGCAA---CAA------------------CAA------------------------------C---TGCAGC---AGCAG---CTGGAGCCGCCGC--------A-------------------------------GC-CGCAGCAGCGCCATTATCGAGAGCGCACCGTCTCCAGCCGCATCATTAGCAACAGCAACA-------------------AGGGC----------------------------------GGC----------------------------------------------------------G-------GC
droMoj3 scaffold_6473:13696664-13696881 + GCAGCGACGCG-------------CCT--CTGGCAGCCAGC-------------------------------CCCAC---------AGC------------------------------------------------------AGCCAC---------------------------------------------ACAAATCTCAATAATCATCACAGCAGCAG---CAACAA-------------------CAA------CA---------------------------------ACAACAA-----T---A------ACAATA---A------------CATCA---GCAGCCACAACAA--------------------------------------------------------------------------------------------------CAACAACAACAATAGTAA---CAACAA---CAACAACAAC---------------AA------------CAAT---------G-----------TGCC-GCACCACCTGCTGCACCACCACGCCAC------GCACCAC--------------CATCCCCA------------------------------------------------------------------------------------CAA-----TGTT--G----GCATACC-----------------------------------------CC
droGri2 scaffold_15252:12931366-12931596 - GGGCTATGGGAG---TCTAGC---------------------------------------------------GCCAC---------AGC------------------------------------------------------AGCAACAACAG------CAGC---------------------------------------AACA------------ACA---------ACAACA-GCCGCCAACGCC--A-------CAA---------------------------------C-----------------------------AG---C------AGCAGCA---GCAGGTGCAGCAGCAACAACAG-----------------------------------------------------------------------------------------CAGGTGCAACAGCAGCAG---CAGCAACAACAA---------------C---AACAGC---AGCAG---CAGAGTCAGCAGC--------A---GG----------------CTCG---AC-TGCC------GCAACAT--------------TA------------------TCCCCAGGCACC-------------------CGGCC----------------------------------AACAT-----CCTC--T----GTA------------TC------CGG-GTGC---AC---CAGCGC-AAGG
droAna3 scaffold_12911:2565709-2565937 - GCAGTGACGTCACCTC-----GGG------------ACAGCACTTCCAGCA---------------------------CC-----------ACACGAAGATCGAGCACGCGGACTCCACCACGA---------CGGCGGCGCA-------------------------------------------------------GC---------------A---GCAACAGCA---A-------------------CAT---CAGCA---------------------------G-----------------C---AGCAGCAACAA---------C------AGCACCA---GCAACAG--------------------------------------------------------------------------------------------------------CAGCAGCAACACCAGCAC---CAACAA---CTGCAACAGC---------------AG---------CA---AT---TGCAAC-----------ATG-------------CTGCGGCCCTTC-ACCC------GCACCAT--------------CATCACCA------------------CGGA--------------------------------------------------------------------------------------------------------CAT----G------GACACCACCAGCA
droBip1 scf7180000395751:160814-161030 + C-AGCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCAACAACAG------CAGCA------------------------------------------------------------------GATGCAG-------------CTG------GCGCAGCAGCAACAGCAGGCTCTCCAGCA------ACACCACCA--GC------------------------------------------ACCT------------------CCAACA-----------------------------GC---------AGCA------------------------C---CAGCAGCAACAGCAACAACAACAGCAG---CAGCAA---------CAA------CAAC---AGCAGC---AGCAG---CAGAAGCTGAAGC--------A---GT-----------------------------CGCAG-------------------------------------------------GCGGCAAGTGCGGCGGCCAACAACAAGGCCACCAA-------------T---------------CTCACCAAGG----A------------------------------------------------CTCGCCCA
droKik1 scf7180000302639:1435887-1436122 + TCGTCCTCGTCG---ACGCCG---CCGGGCCTG-------------------------------------------C------------------------------------------------------------------AGCACGCCCTG------C------------------------------------------------------AGCAGCAG---CAACAG-------------------CATCTGCTCCAG---------------------------------CA--------------------GCAGCA---ACACC------TGCAGCA---GCATCTG--------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCAG---CAACAA---CAACAGCAGC---------------------AGCAGCATCATC---ATCAGC-----------TCG----------------CTCA---------------------------------------------------------TCCCCA----------------------------CC---AGCCGCCCACGCCGCGCCCCAGCTCTCCGCCCACAA-----CGGC--G--CAGCAGATT-----CACATCACG-------GCC--ACC---CAGCACCAGGC
droFic1 scf7180000454106:1687586-1687822 - C-AGCGACGTGTCCTC-----CGG------------CCAGCACTTCCAGCA---------------------------CC-----------ACACGAAGATCGAGCACGCGGACTCCACCACGA---------CGGCGGCCCA-------------------------------------------------------GC---------------AGCAGCAG---CAGCAA-------------------CAACAG---CA---------------------------G-----------------C---AGCA---GCAGCA---A---C------AGCA------GCAGCAG---------CAGCAG-----------------------------------------------------------------------CAACACCAG---CAG------------------CAGCAACAC------CAG---C---------------AGC------AGCAGCAACAGC---TGCAGC-----------ACG-------------CTGCTGCACTGC-ACCC------GCACCAC--------------CACCACCAC--------------------------------------------------------------------------------------------------------------------CAC------CAC-GGAC---AC---CACCACCAGCA
droEle1 scf7180000491043:338066-338316 + GCAGCAGCAGTT---G------------------------------------------------------------------CAACAG------------------------------------------------------------------------CAGC---------------------------------------------------------------A---ACAACAG-------------TTG------CAGCAGCAGCAACAGTTG---------------------------C--------------AAC---AG---C---------AGCATCAGCAGCAACAGTTGCA---------GCA--------------------------------ACA---GC---A------------------------------------GCAGCAACAGCAACTGCAGCAA---CAA------CTGCAACAGCAACATCAAC---TGC------AGCAGCAACTAC---AGCAGCA-----------ATTG-GTGCCAC---CGGCTCCGCCGCAACCT------GCGCCAC--------------CGCCTCCGCC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACATTTACG-GAAATTCCTGGCACCACGGGTG
droRho1 scf7180000779911:443990-444212 + TTCG----------------------------G---------------CAACAGCCACTACGAGCATGATGCACCAC---------AGC------------------------------------------------------AACAGC---------------------------------------------AACAACAACAACAGCCACAACAGCAATA---------C-------------------AAC------CAA---------------------------------CA-----------------------------A---C------AACAGCA---ATACAA------------------CCAACA-----------------------------ACA---ACA---------------------------------------ACAGCAACACTATCACCAGCAA---CACCATCAGCAA---CAA------CA---------AC---AGCT------AC---AACAGCA-----------ATCG-AG--------------------------------CACCAC----------------------------------------------------------------------------------------TCGCCATGTC------AGC-G-----CCCC--C----GTGAACT------CCCC------CAA-GCCC---CC---GAGCACCGGCG
droBia1 scf7180000301760:5134587-5134809 - GCAAAAGCGACG---GCAGGC---GCA--CCAG-------------------------------------------C------------------------------------------------------------------AGCAGCTGCAG------------------------------------------GCGCAGC------------A---GCA---------ACAGTA-CCAGGAGAAGCAATTG------CAGCAGCAGCAACTGCA------------GCAGCAGC-----------------------AACT---------------------GCAGCAGCA------------------GCAACTGCAG--------------------------------------CA------------------------A---CTGCAACAACAGCAACAACTGCAGCAG---CAGCAA---CTG---CAA---------C---AGCAGC---AGCAG---CAGC---AACA----------------------------------------------------------A--------------CAACT----------------------------------------------AAACC----------------------------------AGC-----------AAACTCAAC----------------TCATCTAC---------C---TGCAGCGAAAG
droTak1 scf7180000414393:29076-29318 - TCGCCGTGGCCG---TGGAGC-----------------TGGCCGTCAAGAACGAGATTGTCAAGCATGTGGTGCAGC------------------------------------------------------------------AGCATCAGC------------------------------------------AGATGCAGGAGCAAATGCAGGAGCAGCA---------GCAGCAG-------------CAG------CA---------------------------------ACAGCAA-----C---------------AGCA---------------------------------------------GCAACA-----------------------------GC---------AGCAGCAACAGCAGCAGCAGCAGCAACCCCAG---CAG------------------CAA------------------CAGC------AACAGCAGCAGC---AG------CAAC---AGGT-------------------------------GCACA---------------------------------------------------------AATTCA----------------------------TC----------------------------------GATGA-----GCTG--A----CCAAATC-----CACTT--------C-AGTG---GT---CACCAGCAATG
droEug1 scf7180000409759:863743-863982 - GCAGCAACAGCA---G------------------------------------------------------------------CAGCAG------------------------------------------------------------------------CAGCACAGTCAGACGCAGCAGCAGCACAGCCAAACGCAGC---------------A---GCAG---CAT------CAC-------------CAC------CAG---------------------------------CA--------GC------------AACA---------------------GCAACACAT------------------GT-----------ACCACGCTGCAGTGGCT------GCACACCAGC---------------------AACAGTTGCTG---CAACAG------------CAGCAG---CAA------------CAA------CA------GCAGC---AGCAGCAGCAGC---AGCAT--CACCGCCAGCAAC---------------------------A--------------A--------------CA------------------ACTCCA----------------------------TC---AGCC--------------------CGCC---AACAA-----CAAC--A----GCAACTC----------------------GC---GC---CACAGCCACGC
dm3 chr2R:5359692-5359890 + GCAGCAGGATGG---GA------------------------ACTACCAG---------------------------CAGCAGCAGTAT-CGGGGTGGAAGTCAAATGCTCG-------CTGCGAGGAGTAATCTGGTGATGCA-------------------------------------------------------GC---------------A---GCAG---CAGCAA-------------------CAC------CAG---------------------------------CA--------GCAGCA------GCAATA---TCACC------AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAACAGCAGCAG---CAGCACCAACAA---------------C---AGCAGC---AGCATTTGAGTC---TACAGCG-----------ATTT-GT--------------------------------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droSim2 x:1004071-1004273 - TCTCCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCA------------------------------------------------------------------------GCAG---CAACAA-------------------CAG------CT---------------------------G-----------------C---AGCAGCAACAACA---ACAGCAGCAACTGCAGCA---GCAGCTTCAGCAGCAACAGCTG-----------------------------------------------------------------------CAACTCCAA---CAA------------------CAG------------------CAGC---------------------A---------------ACAGCA-----------GATG-GTGCCAC---CCGCTCCGCCACAACCG------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACGTTTACG-GAAATTCCCGGCACCACGGGCG
droSec2 scaffold_1:6996477-6996677 - TCGGCTCGGGGG---GCTT--TCA------------TCCGCACTATCAG---------------------------CAGCACCACCAT------------------------------------------------------------------------CAGCGCAGCCACTCGGCGACGCACCACAACCACCAGAAGC---------------------GG---CATCAT---ACG-------------CAG------CAG---------------------------------CA--------GC------------AACA---------------------GCAACATAC------------------CCAACA-----------------------------GCA---GCA---------------------------------------GCAGCAGCGGCAACATCAGCAG---CAGCATCAACAG---CA---------------GCAGC---AGCCTAATCAGC---AACACCA-----------GAATGG---------------------------------CGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC
droYak3 X:1029470-1029702 - TCTCCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCAACAACAG------CTGCA---------------------------------GC---------------A---GCAG---CA---GCAACAA-------------CAG------CAG---------------------------------CAGC--------------------AACAACAA---C------TGCAGCA---GCAGCTTCAGCAGCAACAGCTG-----------------------------------------------------------------------CAACTCCAG---CAG---------------CAGCAG---CAA------CAA---------------C---AGCAGC---AGCAGCAGCAGC---AGCAGCA-----------AATG-GTGCCCC---CTGCGCCGCCGCAACCA------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACATTTACG-GAAATTCCCGGCACCACGGGCG
droEre2 scaffold_4644:1099991-1100208 - TCTCCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCAACAACAG------CTGC---------------------------------------------------AGCAGCA---------GCAACAG-------------CAG------CA---------------------------------GCAGCAA--------------------CAGCAA---C------TGCAGCA---GCAGCTACAGCAGCAACAGCTG-----------------------------------------------------------------------CAACTCCAA---CAA------------------CAG------------------CAGC---------------------AGCAACAGCAGC---AGCAGCA-----------GATG-GTGCCCC---CTGCTCCGCCGCAACCG------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACGTTTACG-GAAATTCCCGGCACCACGGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droPer2
GCGGCGGGGTTG---GTGGGG---TCT--CTGG-------------------------------------------C------------------------------------------------------------------AGCAGCAGTGG------------------------------------------AAGCAGCA---------------GCA---------TA-----GTGGCCAATGCC--AT------TAG------------CAGCCTCAATGGCA------ACAACAGTGCC--------------ACC---AG------------CAGCA---GCAGTTG------------------------CATTCAAC--------------CAGCCAACAACAACAAC---------------------AACAATCACAA---CAA------------------CAA------------------CATC------A------GCAGC---AGCCGTGGCAGC---AGCTT--TGA-GGCAGGAAA---------------------------ATG------TCGCCCA--------------CCCCTCTACC--------------------------------------------------------------------------------CAAAA-----CGTG--A----GTAAATC------CCTT------CAA-GGGC---GC---CACCACCAGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................GGCCAATGCC--AT------TAG------------CAGCCTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................................................................................................................................................................................................................A------ACAACAGTGCC--------------ACC---AG------------CAGCA---GCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
dp5
GCGGCGGGGTTG---GTGGGG---TCT--CTGG-------------------------------------------C------------------------------------------------------------------AGCGCCATCAGCAGCAGCAGT------------------------------GGAAGCAGCA---------------GCA---------TA-----GTGGCCAATGCC--AT------TAG------------CAGCCTCAATGGCA------ACAACAGTGCC--------------ACC---AG------------CAGCA---GCAGTTG------------------------CATTCAAC--------------CAGCCAACAACAACAAC---------------------AACAATCACAA---CAA------------------CAA------------------CATC------AGCAACATCAGCAGCAGCCGTGGCAGC---AGCTT--TGA-GGCAGGAAA---------------------------ATG------TCGTCCA--------------CCCCTCTACC--------------------------------------------------------------------------------CAAAA-----CGTG--A----GTAAATCGGGCGCCCTT------CAA-GGGC---GC---CACCACCAGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................TCAGCAGCAGCAGT------------------------------GGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCTT--TGA-GGCAGGAAA---------------------------ATG------TC....................................................................................................................................................................................2311.0010100000000
.........................CT--CTGG-------------------------------------------C------------------------------------------------------------------AGCGCCATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAA---CAA------------------CAA------------------CATC------AGCAACATCAGC................................................................................................................................................................................................................................................................2911.0010100000000
...............................................................................................................................................................................................................................................................................................CA------ACAACAGTGCC--------------ACC---AG------------CAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------CAA------------------CATC------AGCAACATCAGCAGCAGCCGT.......................................................................................................................................................................................................................................................3011.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCTT--TGA-GGCAGGA............................................................................................................................................................................................................................1811.0010100000000
.................................................................................................................................................................................................................................................................................................................C--------------ACC---AG------------CAGCA---GCAGTTG------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................1921.0020200000000
......................................................................................................................................................TCAGCAGCAGCAGT------------------------------GGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................CAGTGCC--------------ACC---AG------------CAGCA---GCAGTTG------------------------CAT.......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAA------------------CAA------------------CATC------AGCAACA.....................................................................................................................................................................................................................................................................2160.8350301001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAA------------------CAA------------------CATC------AGCAACA.....................................................................................................................................................................................................................................................................2080.3830200010000
............................................................................................................................................................GCAGCAGT------------------------------GGAAGCAGCA---------------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAA------------------CAA------------------CATC------AGCAA.......................................................................................................................................................................................................................................................................1970.1410001000000
.........................................................................................................................................................GCAGCAGCAGT------------------------------GGAAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAA------------------CAA------------------CATC------AGCAAC......................................................................................................................................................................................................................................................................1990.1110100000000
droWil2
GCAGCAACAGCA---A------------------------------------------------------------------CAGCAA------------------------------------------------------------------------CAGC---------------------------------------------------------------A---ATACCAA-------------CAG------CAG---------------------CAGCA------ACAACCAGCCC--------------AAC---AG------------CAGCAGCAGCCAATGCAGCAGCAACAACAA-----------------------------------------------------------------------CCACCGCAG---CAG---------------CAGCAG---CAGCAA---------------------C---AGCAGC---AGCAG---CCGGCGCCACAAC--------A--------------------------------GCA------GCAGCAG--------------CCACT----------------------------------------------CTACC----------------------------------AACAA-----TCTC--A----ACAAATT------TCA--------------------------------TCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................CAA------------------------------------------------------------------------CAGC---------------------------------------------------------------A---ATACCAA-------------CAG------CAG---------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------CAGCAG---CAGCAA---------------------C---AGCA..................................................................................................................................................................................................................................................................19200.10200020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGCAA---------------------C---AGCAGC---AGCA.........................................................................................................................................................................................................................................................21200.05101000
droVir3
GCAGCAACAGCA---G------------------------------------------------------------------CTGCAG------------------------------------------------------------------------CAGC---------------------------------------------------------A---------ACAGTTG-CAGCTGCA-G--CGA------CAG------------CAG-----------------------------------------CAACA---ACGCG------AACAGCT---GCAGCTGCAGCAGCAACAGTTGCAGTT-----------------------------CCAATTGCAGCAGC---------------------AGCAGCTGCAA---CAA------------------CAA------------------------------C---TGCAGC---AGCAG---CTGGAGCCGCCGC--------A-------------------------------GC-CGCAGCAGCGCCATTATCGAGAGCGCACCGTCTCCAGCCGCATCATTAGCAACAGCAACA-------------------AGGGC----------------------------------GGC----------------------------------------------------------G-------GCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................AACA---ACGCG------AACAGCT---GCAGCTGCA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................TG-CAGCTGCA-G--CGA------CAG------------CAG-----------------------------------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................C---------------------------------------------------------A---------ACAGTTG-CAGCTGCA-G--C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAA------------------CAA------------------------------C---TGCAGC---A............................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AGCAGCTGCAA---CAA------------------CAA------------------------------C---......................................................................................................................................................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
GCAGCGACGCG-------------CCT--CTGGCAGCCAGC-------------------------------CCCAC---------AGC------------------------------------------------------AGCCAC---------------------------------------------ACAAATCTCAATAATCATCACAGCAGCAG---CAACAA-------------------CAA------CA---------------------------------ACAACAA-----T---A------ACAATA---A------------CATCA---GCAGCCACAACAA--------------------------------------------------------------------------------------------------CAACAACAACAATAGTAA---CAACAA---CAACAACAAC---------------AA------------CAAT---------G-----------TGCC-GCACCACCTGCTGCACCACCACGCCAC------GCACCAC--------------CATCCCCA------------------------------------------------------------------------------------CAA-----TGTT--G----GCATACC-----------------------------------------CCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................CAGCCAGC-------------------------------CCCAC---------AGC------------------------------------------------------AGCCAC---------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------AA------------CAAT---------G-----------TGCC-GCACCACCTG.............................................................................................................................................................................................................2511.001000010
..........................................................................................................................................................................................................................AGCAG---CAACAA-------------------CAA------CA---------------------------------ACAACAA-----T---A------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
droGri2
GGGCTATGGGAG---TCTAGC---------------------------------------------------GCCAC---------AGC------------------------------------------------------AGCAACAACAG------CAGC---------------------------------------AACA------------ACA---------ACAACA-GCCGCCAACGCC--A-------CAA---------------------------------C-----------------------------AG---C------AGCAGCA---GCAGGTGCAGCAGCAACAACAG-----------------------------------------------------------------------------------------CAGGTGCAACAGCAGCAG---CAGCAACAACAA---------------C---AACAGC---AGCAG---CAGAGTCAGCAGC--------A---GG----------------CTCG---AC-TGCC------GCAACAT--------------TA------------------TCCCCAGGCACC-------------------CGGCC----------------------------------AACAT-----CCTC--T----GTA------------TC------CGG-GTGC---AC---CAGCGC-AAGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGAGTCAGCAGC--------A---GG----------------CTCG---AC-TGCC------G.....................................................................................................................................................................................2811.00110
.......................................................................................................................................................................................................................................ACAACA-GCCGCCAACGCC--A-------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACAGCAGCAG---CAGCAACAAC...........................................................................................................................................................................................................................................................................................2530.33110
.......................................................................................GC------------------------------------------------------AGCAACAACAG------CAGC---------------------------------------AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110
droAna3
GCAGTGACGTCACCTC-----GGG------------ACAGCACTTCCAGCA---------------------------CC-----------ACACGAAGATCGAGCACGCGGACTCCACCACGA---------CGGCGGCGCA-------------------------------------------------------GC---------------A---GCAACAGCA---A-------------------CAT---CAGCA---------------------------G-----------------C---AGCAGCAACAA---------C------AGCACCA---GCAACAG--------------------------------------------------------------------------------------------------------CAGCAGCAACACCAGCAC---CAACAA---CTGCAACAGC---------------AG---------CA---AT---TGCAAC-----------ATG-------------CTGCGGCCCTTC-ACCC------GCACCAT--------------CATCACCA------------------CGGA--------------------------------------------------------------------------------------------------------CAT----G------GACACCACCAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----------ATG-------------CTGCGGCCCTTC-ACCC------......................................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................AACAA---------C------AGCACCA---GCAACAG--------------------------------------------------------------------------------------------------------CAGC......................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................AT---CAGCA---------------------------G-----------------C---AGCAGCAACAA---------C------AGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................A-------------------------------------------------------GC---------------A---GCAACAGCA---A-------------------CAT---CAGCA---------------------------G-----------------C---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.111000001
.................................................................................................................................................................................................................................GCA---A-------------------CAT---CAGCA---------------------------G-----------------C---AGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.091000100
............................................................................................................................................................................................................................................................................................................................................................GCAACAG--------------------------------------------------------------------------------------------------------CAGCAGCAACAC..............................................................................................................................................................................................................................................................................................................19140.071010000
...............................................................................................................................................................................................................................................................................................................................CAA---------C------AGCACCA---GCAACAG--------------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................19140.071100000
.................................................................................................................................................................................................................................GCA---A-------------------CAT---CAGCA---------------------------G-----------------C---AGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
.....................................................................................................................................................................................................................................................................................................................................................ACCA---GCAACAG--------------------------------------------------------------------------------------------------------CAGCAGCA..................................................................................................................................................................................................................................................................................................................19200.051000001
droBip1
C-AGCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCAACAACAG------CAGCA------------------------------------------------------------------GATGCAG-------------CTG------GCGCAGCAGCAACAGCAGGCTCTCCAGCA------ACACCACCA--GC------------------------------------------ACCT------------------CCAACA-----------------------------GC---------AGCA------------------------C---CAGCAGCAACAGCAACAACAACAGCAG---CAGCAA---------CAA------CAAC---AGCAGC---AGCAG---CAGAAGCTGAAGC--------A---GT-----------------------------CGCAG-------------------------------------------------GCGGCAAGTGCGGCGGCCAACAACAAGGCCACCAA-------------T---------------CTCACCAAGG----A------------------------------------------------CTCGCCCASizeHit CountTotal NormTotal
No Reads
droKik1
TCGTCCTCGTCG---ACGCCG---CCGGGCCTG-------------------------------------------C------------------------------------------------------------------AGCACGCCCTG------C------------------------------------------------------AGCAGCAG---CAACAG-------------------CATCTGCTCCAG---------------------------------CA--------------------GCAGCA---ACACC------TGCAGCA---GCATCTG--------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCAG---CAACAA---CAACAGCAGC---------------------AGCAGCATCATC---ATCAGC-----------TCG----------------CTCA---------------------------------------------------------TCCCCA----------------------------CC---AGCCGCCCACGCCGCGCCCCAGCTCTCCGCCCACAA-----CGGC--G--CAGCAGATT-----CACATCACG-------GCC--ACC---CAGCACCAGGCSizeHit CountTotal NormTotal
No Reads
droFic1
C-AGCGACGTGTCCTC-----CGG------------CCAGCACTTCCAGCA---------------------------CC-----------ACACGAAGATCGAGCACGCGGACTCCACCACGA---------CGGCGGCCCA-------------------------------------------------------GC---------------AGCAGCAG---CAGCAA-------------------CAACAG---CA---------------------------G-----------------C---AGCA---GCAGCA---A---C------AGCA------GCAGCAG---------CAGCAG-----------------------------------------------------------------------CAACACCAG---CAG------------------CAGCAACAC------CAG---C---------------AGC------AGCAGCAACAGC---TGCAGC-----------ACG-------------CTGCTGCACTGC-ACCC------GCACCAC--------------CACCACCAC--------------------------------------------------------------------------------------------------------------------CAC------CAC-GGAC---AC---CACCACCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
GCAGCAGCAGTT---G------------------------------------------------------------------CAACAG------------------------------------------------------------------------CAGC---------------------------------------------------------------A---ACAACAG-------------TTG------CAGCAGCAGCAACAGTTG---------------------------C--------------AAC---AG---C---------AGCATCAGCAGCAACAGTTGCA---------GCA--------------------------------ACA---GC---A------------------------------------GCAGCAACAGCAACTGCAGCAA---CAA------CTGCAACAGCAACATCAAC---TGC------AGCAGCAACTAC---AGCAGCA-----------ATTG-GTGCCAC---CGGCTCCGCCGCAACCT------GCGCCAC--------------CGCCTCCGCC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACATTTACG-GAAATTCCTGGCACCACGGGTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTCG----------------------------G---------------CAACAGCCACTACGAGCATGATGCACCAC---------AGC------------------------------------------------------AACAGC---------------------------------------------AACAACAACAACAGCCACAACAGCAATA---------C-------------------AAC------CAA---------------------------------CA-----------------------------A---C------AACAGCA---ATACAA------------------CCAACA-----------------------------ACA---ACA---------------------------------------ACAGCAACACTATCACCAGCAA---CACCATCAGCAA---CAA------CA---------AC---AGCT------AC---AACAGCA-----------ATCG-AG--------------------------------CACCAC----------------------------------------------------------------------------------------TCGCCATGTC------AGC-G-----CCCC--C----GTGAACT------CCCC------CAA-GCCC---CC---GAGCACCGGCGSizeHit CountTotal NormTotal
No Reads
droBia1
GCAAAAGCGACG---GCAGGC---GCA--CCAG-------------------------------------------C------------------------------------------------------------------AGCAGCTGCAG------------------------------------------GCGCAGC------------A---GCA---------ACAGTA-CCAGGAGAAGCAATTG------CAGCAGCAGCAACTGCA------------GCAGCAGC-----------------------AACT---------------------GCAGCAGCA------------------GCAACTGCAG--------------------------------------CA------------------------A---CTGCAACAACAGCAACAACTGCAGCAG---CAGCAA---CTG---CAA---------C---AGCAGC---AGCAG---CAGC---AACA----------------------------------------------------------A--------------CAACT----------------------------------------------AAACC----------------------------------AGC-----------AAACTCAAC----------------TCATCTAC---------C---TGCAGCGAAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TCGCCGTGGCCG---TGGAGC-----------------TGGCCGTCAAGAACGAGATTGTCAAGCATGTGGTGCAGC------------------------------------------------------------------AGCATCAGC------------------------------------------AGATGCAGGAGCAAATGCAGGAGCAGCA---------GCAGCAG-------------CAG------CA---------------------------------ACAGCAA-----C---------------AGCA---------------------------------------------GCAACA-----------------------------GC---------AGCAGCAACAGCAGCAGCAGCAGCAACCCCAG---CAG------------------CAA------------------CAGC------AACAGCAGCAGC---AG------CAAC---AGGT-------------------------------GCACA---------------------------------------------------------AATTCA----------------------------TC----------------------------------GATGA-----GCTG--A----CCAAATC-----CACTT--------C-AGTG---GT---CACCAGCAATGSizeHit CountTotal NormTotal
No Reads
droEug1
GCAGCAACAGCA---G------------------------------------------------------------------CAGCAG------------------------------------------------------------------------CAGCACAGTCAGACGCAGCAGCAGCACAGCCAAACGCAGC---------------A---GCAG---CAT------CAC-------------CAC------CAG---------------------------------CA--------GC------------AACA---------------------GCAACACAT------------------GT-----------ACCACGCTGCAGTGGCT------GCACACCAGC---------------------AACAGTTGCTG---CAACAG------------CAGCAG---CAA------------CAA------CA------GCAGC---AGCAGCAGCAGC---AGCAT--CACCGCCAGCAAC---------------------------A--------------A--------------CA------------------ACTCCA----------------------------TC---AGCC--------------------CGCC---AACAA-----CAAC--A----GCAACTC----------------------GC---GC---CACAGCCACGCSizeHit CountTotal NormTotal
No Reads
dm3
GCAGCAGGATGG---GA------------------------ACTACCAG---------------------------CAGCAGCAGTAT-CGGGGTGGAAGTCAAATGCTCG-------CTGCGAGGAGTAATCTGGTGATGCA-------------------------------------------------------GC---------------A---GCAG---CAGCAA-------------------CAC------CAG---------------------------------CA--------GCAGCA------GCAATA---TCACC------AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAACAGCAGCAG---CAGCACCAACAA---------------C---AGCAGC---AGCATTTGAGTC---TACAGCG-----------ATTT-GT--------------------------------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................AATGCTCG-------CTGCGAGGAGTAATCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTC---TACAGCG-----------ATTT-GT--------------------------------.....................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................CCAG---------------------------CAGCAGCAGTAT-CGGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CCAG---------------------------CAGCAGCAGTAT-CGGGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAACAA---------------C---AGCAGC---AG...........................................................................................................................................................................................................................................................1921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGAGTC---TACAGCG-----------ATTT-GT--------------------------------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................A------GCAATA---TCACC------AGCA-----------------------------------------------------------------AC............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCAACAA---------------C---AGCAGC---AG...........................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....CAGGATGG---GA------------------------ACTACCAG---------------------------CAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................................................AATA---TCACC------AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGC.........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAACAA---------------C---AGCAGC---AGC..........................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................TACCAG---------------------------CAGCAGCAGTAT-CGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................TGCTCG-------CTGCGAGGAGTAATCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................G-------CTGCGAGGAGTAATCTGGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................AGGAGTAATCTGGTGATGCA-------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AGGAGTAATCTGGTGATGCA-------------------------------------------------------GC---------------A---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................CA------GCAATA---TCACC------AGCA-----------------------------------------------------------------AC............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCATTTGAGTC---TACAGCG-----------AT..........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCATTTGAGTC---TACAGC........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CAG---------------------------CAGCAGCAGTAT-CGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCAACAA---------------C---AGCAGC---.............................................................................................................................................................................................................................................................1940.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAACAA---------------C---AGCAGC---AGCA.........................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCACCAACAA---------------C---AGCAGC---A............................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ACC------AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCA..................................................................................................................................................................................................................................................................................................................2540.5020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACCAACAA---------------C---AGCAGC---AGCA.........................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAG---CAG..................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000030
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAG---CAGC.................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---------------C---AGCAGC---AGCATT.......................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAAC................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CC------AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGC...................................................................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CAGCACCAACAA---------------C---AGCA..................................................................................................................................................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................A--------GCAGCA------GCAATA---TCACT------...................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAA.................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAACAGCAG...........................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCACCAACAA---------------C---AG....................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................CA-------------------------------------------------------GC---------------A---GCAG---CAGCAA-------------------CAC------CAG---------------------------------CA--------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAGCACCAACA..........................................................................................................................................................................................................................................................................................19160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAACAGC.............................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------------------------------ACAGCAACAGCAACAGCAGCAG---CAGC.................................................................................................................................................................................................................................................................................................29100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCAG---C....................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCAGCAG---.....................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................GCA-------------------------------------------------------GC---------------A---GCAG---CAGCAA-------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AA-------------------CAC------CAG---------------------------------CA--------GCAGCA------GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCACCAACAA---------------C---A.....................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
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..............................................................................................................................................................................................................................G---CAGCAA-------------------CAC------CAG---------------------------------CA--------GCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................AGCAA-------------------CAC------CAG---------------------------------CA--------GCAGCA------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................A-------------------------------------------------------GC---------------A---GCAG---CAGCAA-------------------CAC------CAG---------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................GCAA-------------------CAC------CAG---------------------------------CA--------GCAGCA------GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG---CAGCACCA.............................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CA-------------------------------------------------------GC---------------A---GCAG---CAGCAA-------------------CAC------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCAGCAG---CAGCA................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................C------AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAA.................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGCA-----------------------------------------------------------------ACA---GCA---------------------------------------ACAGCAACAGCAACA...............................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCTCCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCA------------------------------------------------------------------------GCAG---CAACAA-------------------CAG------CT---------------------------G-----------------C---AGCAGCAACAACA---ACAGCAGCAACTGCAGCA---GCAGCTTCAGCAGCAACAGCTG-----------------------------------------------------------------------CAACTCCAA---CAA------------------CAG------------------CAGC---------------------A---------------ACAGCA-----------GATG-GTGCCAC---CCGCTCCGCCACAACCG------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACGTTTACG-GAAATTCCCGGCACCACGGGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAA------------------CAG------------------CAGC---------------------A---------------ACAGCA-----------............................................................................................................................................................................................................................20202.7054000054000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAAG----ATAGTCAAT----------------AC..............................1912.00201000010000000000
..........................................................................................................................................................................................................................................................................................................................AGCAACAACA---ACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................21161.0016000016000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AACAGCTG-----------------------------------------------------------------------CAACTCC.....................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT----------------ACGTTTACG-GAAATTCCCGGCA.........2511.00101000000000000000
...........................................................................................................................................................................................................................................................CAG------CT---------------------------G-----------------C---AGCAGCAACAACA---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2131.00300000300000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG-GAAATTCCCGGCACCACGGGCG2611.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------------ACGTTTACG-GAAATTCCCGGCA.........2411.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACG-GAAATTCCCGGCACCACGGGC.2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................CAACA---ACAGCAGCAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.71532000000000000000
droSec2
TCGGCTCGGGGG---GCTT--TCA------------TCCGCACTATCAG---------------------------CAGCACCACCAT------------------------------------------------------------------------CAGCGCAGCCACTCGGCGACGCACCACAACCACCAGAAGC---------------------GG---CATCAT---ACG-------------CAG------CAG---------------------------------CA--------GC------------AACA---------------------GCAACATAC------------------CCAACA-----------------------------GCA---GCA---------------------------------------GCAGCAGCGGCAACATCAGCAG---CAGCATCAACAG---CA---------------GCAGC---AGCCTAATCAGC---AACACCA-----------GAATGG---------------------------------CGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................GCACCACAACCACCAGAAGC---------------------GG---CATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..........................................................................................................................................................................................CAACCACCAGAAGC---------------------GG---CATCAT---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.....................................................................................................................................................................................CACCACAACCACCAGAAGC---------------------GG---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........................................TATCAG---------------------------CAGCACCACCAT------------------------------------------------------------------------CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.....................................................................................................................................................................................CACCACAACCACCAGAAGC---------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGC---AACACCA-----------GAATGG---------------------------------CGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.2411.0010100
......................................................................................................................................................................................................................................................................................................................................................................................AACA-----------------------------GCA---GCA---------------------------------------GCAGCAGCGGCA..................................................................................................................................................................................................................................................................................................................2260.1710001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---CAGCATCAACAG---CA---------------GC...................................................................................................................................................................................................................................................................2280.1310001
............................................................................................................................................................................................................................................................AG------CAG---------------------------------CA--------GC------------AACA---------------------GCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAG---CA---------------GCAGC---AGC..........................................................................................................................................................................................................................................................19200.0510010
droYak3
TCTCCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCAACAACAG------CTGCA---------------------------------GC---------------A---GCAG---CA---GCAACAA-------------CAG------CAG---------------------------------CAGC--------------------AACAACAA---C------TGCAGCA---GCAGCTTCAGCAGCAACAGCTG-----------------------------------------------------------------------CAACTCCAG---CAG---------------CAGCAG---CAA------CAA---------------C---AGCAGC---AGCAGCAGCAGC---AGCAGCA-----------AATG-GTGCCCC---CTGCGCCGCCGCAACCA------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACATTTACG-GAAATTCCCGGCACCACGGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCA------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CA.....................................................................2511.00100000010000
........................................................................................................................................................................................................................................CAACAA-------------CAG------CAG---------------------------------CAGC--------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.25500000000005
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCAG---CAG---------------CAGCAG---CA...................................................................................................................................................................................................................................................................................................2080.13101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------CAGCAG---CAA------CAA---------------C---AGCAGC---A............................................................................................................................................................................................................................................................21200.10202000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAA---------------C---AGCAGC---AGCAGCAGCAGC---AGC...........................................................................................................................................................................................................................................27120.08100100000000
.......................................................................................................................................................................................................C---------------A---GCAG---CA---GCAACAA-------------CAG------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAA------CAA---------------C---AGCAGC---AGCAGCAGC....................................................................................................................................................................................................................................................23200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAG---------------CAGCAG---CAA------CAA---------------C---AGCAG.................................................................................................................................................................................................................................................................22200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAA---------------C---AGCAGC---AGCAGCAGCAGC---..............................................................................................................................................................................................................................................24200.05101000000000
droEre2
TCTCCAG---------------------------------------------------------------------C------------------------------------------------------------------AGCAACAACAG------CTGC---------------------------------------------------AGCAGCA---------GCAACAG-------------CAG------CA---------------------------------GCAGCAA--------------------CAGCAA---C------TGCAGCA---GCAGCTACAGCAGCAACAGCTG-----------------------------------------------------------------------CAACTCCAA---CAA------------------CAG------------------CAGC---------------------AGCAACAGCAGC---AGCAGCA-----------GATG-GTGCCCC---CTGCTCCGCCGCAACCG------GCGCCTC--------------CGCCTCCACC--------------------------------------------------------------------------------CAAACCAAAG----ATAGTCAAT----------------ACGTTTACG-GAAATTCCCGGCACCACGGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAGCTACAGCAGCAACAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................CAACAACAG------CTGC---------------------------------------------------AGCAGCA---------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000
.................................................................................................................................................CAACAACAG------CTGC---------------------------------------------------AGCAGCA---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2511000000
...........................................................................................................................................................................................................................GCA---------GCAACAG-------------CAG------CA---------------------------------GCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1533000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------AGCAACAGCAGC---AGCAGCA-----------GA..........................................................................................................................................................................................................................22170.0610000010
........................................................................................................................................................................................................................................CAACAG-------------CAG------CA---------------------------------GCAGCAA--------------------CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000
..........................................................................................................................................................................................................................AGCA---------GCAACAG-------------CAG------CA---------------------------------GCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
.......................................................................................................................................................................................................................AGCAGCA---------GCAACAG-------------CAG------CA---------------------------------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAA------------------CAG------------------CAGC---------------------AGCAACAGCAG..................................................................................................................................................................................................................................................22200.0511000000

Generated: 06/08/2015 at 03:25 PM